Metagenome Family F051376

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F051376
Family Type	Metagenome
Number of Sequences	144
Average Sequence Length	65 residues
Representative Sequence	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSSS
Number of Associated Samples	99
Number of Associated Scaffolds	144

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.25 %
% of genes near scaffold ends (potentially truncated)	26.39 %
% of genes from short scaffolds (< 2000 bps)	79.17 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.73

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (40.972 % of family members)
Environment Ontology (ENVO)	Unclassified (49.306 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (61.111 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 65.22% β-sheet: 0.00% Coil/Unstructured: 34.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.73
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.73
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.266.1.0: automated matches	d2nw8a_	2nw8	0.89953
a.25.1.1: Ferritin	d3ka8a_	3ka8	0.89704
a.23.1.1: HSC20 (HSCB), C-terminal oligomerisation domain	d1fpoa2	1fpo	0.894
a.25.1.4: YciF-like	d2gyqa1	2gyq	0.88868
a.47.5.1: FlgN-like	d2fupa1	2fup	0.88614

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 144 Family Scaffolds
PF01266	DAO	8.33
PF11066	DUF2867	4.86
PF02515	CoA_transf_3	4.17
PF03061	4HBT	3.47
PF00496	SBP_bac_5	2.78
PF04392	ABC_sub_bind	2.78
PF01979	Amidohydro_1	2.78
PF04909	Amidohydro_2	2.78
PF01434	Peptidase_M41	2.08
PF08546	ApbA_C	2.08
PF13633	Obsolete Pfam Family	2.08
PF09118	GO-like_E_set	2.08
PF13686	DrsE_2	1.39
PF13193	AMP-binding_C	1.39
PF13147	Obsolete Pfam Family	1.39
PF03476	MOSC_N	1.39
PF03781	FGE-sulfatase	1.39
PF13458	Peripla_BP_6	1.39
PF00296	Bac_luciferase	1.39
PF02719	Polysacc_synt_2	0.69
PF07969	Amidohydro_3	0.69
PF01638	HxlR	0.69
PF01894	UPF0047	0.69
PF13416	SBP_bac_8	0.69
PF07589	PEP-CTERM	0.69
PF08592	Anthrone_oxy	0.69
PF00753	Lactamase_B	0.69
PF12697	Abhydrolase_6	0.69
PF13557	Phenol_MetA_deg	0.69
PF07963	N_methyl	0.69
PF00216	Bac_DNA_binding	0.69
PF10518	TAT_signal	0.69
PF02653	BPD_transp_2	0.69
PF08538	DUF1749	0.69
PF01883	FeS_assembly_P	0.69
PF00378	ECH_1	0.69
PF01694	Rhomboid	0.69
PF08450	SGL	0.69
PF13565	HTH_32	0.69
PF12399	BCA_ABC_TP_C	0.69
PF01569	PAP2	0.69
PF04055	Radical_SAM	0.69
PF07578	LAB_N	0.69
PF00149	Metallophos	0.69
PF13561	adh_short_C2	0.69
PF01557	FAA_hydrolase	0.69
PF00106	adh_short	0.69

COG ID	Name	Functional Category	% Frequency in 144 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	4.17
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.78
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	2.08
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	2.08
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.39
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.39
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.39
COG3217	N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain	Defense mechanisms [V]	1.39
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.39
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	1.39
COG3952	Uncharacterized N-terminal domain of lipid-A-disaccharide synthase	General function prediction only [R]	0.69
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.69
COG3391	DNA-binding beta-propeller fold protein YncE	General function prediction only [R]	0.69
COG3386	Sugar lactone lactonase YvrE	Carbohydrate transport and metabolism [G]	0.69
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.69
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.69
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.69
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.69
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.69
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.69
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.17 %
Unclassified	root	N/A	20.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	20.14 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.19 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.78 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	0.69 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	20.14 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2.78 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.69 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	0.69 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	20.14 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.39 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.69 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.69 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.69 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.69 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	11.81 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.39 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.69 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.69 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.69 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.69 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.69 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.83 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.81 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.39 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.69 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	0.69 %
Olavius algarvensis associated proteobacterium Delta 3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3	0.69 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.69 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.69 %
Actinobacteria bacterium 13_1_40CM_4_65_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2035918004\|FACENC_F56XM5W01DMXQ4	Not Available	509	Open in IMG/M
2088090014\|GPIPI_16970579	All Organisms → cellular organisms → Bacteria	3279	Open in IMG/M
2088090014\|GPIPI_17275670	All Organisms → cellular organisms → Bacteria	1095	Open in IMG/M
3300000443\|F12B_10375433	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1431	Open in IMG/M
3300002562\|JGI25382J37095_10048375	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300004479\|Ga0062595_100619132	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	848	Open in IMG/M
3300005171\|Ga0066677_10219627	All Organisms → cellular organisms → Bacteria	1070	Open in IMG/M
3300005172\|Ga0066683_10194103	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005172\|Ga0066683_10419772	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300005176\|Ga0066679_10021569	All Organisms → cellular organisms → Bacteria → Proteobacteria	3421	Open in IMG/M
3300005177\|Ga0066690_10821406	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300005180\|Ga0066685_10610861	All Organisms → cellular organisms → Bacteria	750	Open in IMG/M
3300005332\|Ga0066388_104563252	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	705	Open in IMG/M
3300005441\|Ga0070700_101395222	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	592	Open in IMG/M
3300005444\|Ga0070694_100728769	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300005445\|Ga0070708_100048542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3752	Open in IMG/M
3300005446\|Ga0066686_10215966	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300005467\|Ga0070706_100032095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4844	Open in IMG/M
3300005468\|Ga0070707_100051599	All Organisms → cellular organisms → Bacteria → Proteobacteria	3943	Open in IMG/M
3300005468\|Ga0070707_100536081	Not Available	1133	Open in IMG/M
3300005471\|Ga0070698_100976932	All Organisms → cellular organisms → Bacteria	794	Open in IMG/M
3300005545\|Ga0070695_101692846	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	529	Open in IMG/M
3300005556\|Ga0066707_10423554	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	865	Open in IMG/M
3300005558\|Ga0066698_10257128	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300005561\|Ga0066699_10008981	All Organisms → cellular organisms → Bacteria	4818	Open in IMG/M
3300005718\|Ga0068866_11271139	Not Available	534	Open in IMG/M
3300006173\|Ga0070716_101744054	Not Available	514	Open in IMG/M
3300006794\|Ga0066658_10849821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	520	Open in IMG/M
3300006796\|Ga0066665_10969391	Not Available	654	Open in IMG/M
3300006796\|Ga0066665_11193393	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006796\|Ga0066665_11255681	Not Available	567	Open in IMG/M
3300006854\|Ga0075425_100812409	Not Available	1071	Open in IMG/M
3300006854\|Ga0075425_101344394	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300006871\|Ga0075434_101119741	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300009012\|Ga0066710_100401248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2044	Open in IMG/M
3300009038\|Ga0099829_10007712	All Organisms → cellular organisms → Bacteria → Proteobacteria	6757	Open in IMG/M
3300009038\|Ga0099829_10017436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4850	Open in IMG/M
3300009038\|Ga0099829_10060934	All Organisms → cellular organisms → Bacteria	2830	Open in IMG/M
3300009038\|Ga0099829_10159770	All Organisms → cellular organisms → Bacteria	1804	Open in IMG/M
3300009038\|Ga0099829_10177451	All Organisms → cellular organisms → Bacteria	1713	Open in IMG/M
3300009038\|Ga0099829_10683722	All Organisms → cellular organisms → Bacteria	853	Open in IMG/M
3300009038\|Ga0099829_10775923	All Organisms → cellular organisms → Bacteria	796	Open in IMG/M
3300009038\|Ga0099829_11379959	Not Available	582	Open in IMG/M
3300009038\|Ga0099829_11793539	Not Available	502	Open in IMG/M
3300009089\|Ga0099828_10482800	Not Available	1118	Open in IMG/M
3300009089\|Ga0099828_10485098	Not Available	1115	Open in IMG/M
3300009089\|Ga0099828_10654269	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300009089\|Ga0099828_11391022	Not Available	620	Open in IMG/M
3300009090\|Ga0099827_10382502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1201	Open in IMG/M
3300009090\|Ga0099827_10605774	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	945	Open in IMG/M
3300009090\|Ga0099827_10768706	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300009090\|Ga0099827_11546113	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	578	Open in IMG/M
3300009837\|Ga0105058_1195354	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	504	Open in IMG/M
3300010046\|Ga0126384_10043286	All Organisms → cellular organisms → Bacteria	3061	Open in IMG/M
3300010358\|Ga0126370_10030644	All Organisms → cellular organisms → Bacteria	3233	Open in IMG/M
3300010359\|Ga0126376_11096611	Not Available	804	Open in IMG/M
3300010361\|Ga0126378_13359496	Not Available	508	Open in IMG/M
3300010391\|Ga0136847_12010388	All Organisms → cellular organisms → Bacteria	2122	Open in IMG/M
3300010398\|Ga0126383_12919021	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	558	Open in IMG/M
3300011269\|Ga0137392_10315533	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1293	Open in IMG/M
3300011269\|Ga0137392_10412178	All Organisms → cellular organisms → Bacteria	1122	Open in IMG/M
3300011270\|Ga0137391_10251346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1532	Open in IMG/M
3300011270\|Ga0137391_10324247	All Organisms → cellular organisms → Bacteria → Proteobacteria	1326	Open in IMG/M
3300011271\|Ga0137393_10007926	All Organisms → cellular organisms → Bacteria	7145	Open in IMG/M
3300012096\|Ga0137389_10388197	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1191	Open in IMG/M
3300012189\|Ga0137388_11981662	Not Available	511	Open in IMG/M
3300012199\|Ga0137383_10243271	All Organisms → cellular organisms → Bacteria	1319	Open in IMG/M
3300012202\|Ga0137363_10008854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6366	Open in IMG/M
3300012203\|Ga0137399_11549773	Not Available	550	Open in IMG/M
3300012204\|Ga0137374_10033494	All Organisms → cellular organisms → Bacteria	5571	Open in IMG/M
3300012204\|Ga0137374_10271525	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300012351\|Ga0137386_10498177	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300012353\|Ga0137367_10135129	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius algarvensis associated proteobacterium Delta 3	1805	Open in IMG/M
3300012353\|Ga0137367_10847462	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300012355\|Ga0137369_10040508	All Organisms → cellular organisms → Bacteria	4173	Open in IMG/M
3300012356\|Ga0137371_10321189	Not Available	1205	Open in IMG/M
3300012359\|Ga0137385_10368736	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1227	Open in IMG/M
3300012361\|Ga0137360_10265612	All Organisms → cellular organisms → Bacteria → Proteobacteria	1414	Open in IMG/M
3300012362\|Ga0137361_11661921	Not Available	559	Open in IMG/M
3300012363\|Ga0137390_10011587	All Organisms → cellular organisms → Bacteria	7852	Open in IMG/M
3300012363\|Ga0137390_10348658	All Organisms → cellular organisms → Bacteria	1461	Open in IMG/M
3300012363\|Ga0137390_11839152	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300012509\|Ga0157334_1009755	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300012532\|Ga0137373_10449493	Not Available	992	Open in IMG/M
3300012923\|Ga0137359_10190941	All Organisms → cellular organisms → Bacteria	1829	Open in IMG/M
3300012927\|Ga0137416_10896648	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	788	Open in IMG/M
3300012929\|Ga0137404_10307887	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1376	Open in IMG/M
3300012929\|Ga0137404_11524487	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300012929\|Ga0137404_12139166	Not Available	523	Open in IMG/M
3300012931\|Ga0153915_11096446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	929	Open in IMG/M
3300012931\|Ga0153915_11591837	Not Available	764	Open in IMG/M
3300012964\|Ga0153916_10015919	All Organisms → cellular organisms → Bacteria	6214	Open in IMG/M
3300012976\|Ga0134076_10331732	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300013306\|Ga0163162_10495004	All Organisms → cellular organisms → Bacteria	1353	Open in IMG/M
3300013308\|Ga0157375_11450077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_40CM_4_65_12	809	Open in IMG/M
3300014269\|Ga0075302_1157343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	555	Open in IMG/M
3300015053\|Ga0137405_1067483	All Organisms → cellular organisms → Bacteria	1100	Open in IMG/M
3300015264\|Ga0137403_10680700	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300015371\|Ga0132258_10590310	All Organisms → cellular organisms → Bacteria	2788	Open in IMG/M
3300015372\|Ga0132256_100060913	All Organisms → cellular organisms → Bacteria	3542	Open in IMG/M
3300015373\|Ga0132257_100193454	All Organisms → cellular organisms → Bacteria	2406	Open in IMG/M
3300015374\|Ga0132255_100265774	All Organisms → cellular organisms → Bacteria → Proteobacteria	2457	Open in IMG/M
3300015374\|Ga0132255_100615814	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1606	Open in IMG/M
3300017659\|Ga0134083_10495610	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	546	Open in IMG/M
3300018431\|Ga0066655_10142539	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300018468\|Ga0066662_10007077	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5608	Open in IMG/M
3300018468\|Ga0066662_12934100	Not Available	506	Open in IMG/M
3300018482\|Ga0066669_11988550	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300024310\|Ga0247681_1045873	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	666	Open in IMG/M
3300025910\|Ga0207684_10020052	All Organisms → cellular organisms → Bacteria	5713	Open in IMG/M
3300025910\|Ga0207684_10044671	All Organisms → cellular organisms → Bacteria	3758	Open in IMG/M
3300025910\|Ga0207684_10303009	All Organisms → cellular organisms → Bacteria	1378	Open in IMG/M
3300025922\|Ga0207646_10078030	All Organisms → cellular organisms → Bacteria	2960	Open in IMG/M
3300025922\|Ga0207646_10454718	Not Available	1155	Open in IMG/M
3300025922\|Ga0207646_10619740	All Organisms → cellular organisms → Bacteria	970	Open in IMG/M
3300025939\|Ga0207665_11428673	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	550	Open in IMG/M
3300026089\|Ga0207648_12050391	Not Available	533	Open in IMG/M
3300026296\|Ga0209235_1066457	All Organisms → cellular organisms → Bacteria → Proteobacteria	1661	Open in IMG/M
3300026297\|Ga0209237_1019754	All Organisms → cellular organisms → Bacteria → Proteobacteria	3861	Open in IMG/M
3300026318\|Ga0209471_1336523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	500	Open in IMG/M
3300026335\|Ga0209804_1276327	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300026343\|Ga0209159_1186013	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	711	Open in IMG/M
3300026498\|Ga0257156_1028756	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1122	Open in IMG/M
3300026532\|Ga0209160_1100250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1469	Open in IMG/M
3300027846\|Ga0209180_10017628	All Organisms → cellular organisms → Bacteria → Proteobacteria	3751	Open in IMG/M
3300027846\|Ga0209180_10029464	All Organisms → cellular organisms → Bacteria	2951	Open in IMG/M
3300027846\|Ga0209180_10199211	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1155	Open in IMG/M
3300027846\|Ga0209180_10541753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	648	Open in IMG/M
3300027862\|Ga0209701_10169372	All Organisms → cellular organisms → Bacteria → Proteobacteria	1321	Open in IMG/M
3300027862\|Ga0209701_10181585	All Organisms → cellular organisms → Bacteria	1266	Open in IMG/M
3300027875\|Ga0209283_10822614	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	569	Open in IMG/M
3300027875\|Ga0209283_10823716	Not Available	568	Open in IMG/M
3300027882\|Ga0209590_10220095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1205	Open in IMG/M
3300027882\|Ga0209590_11033324	Not Available	511	Open in IMG/M
3300028536\|Ga0137415_10749490	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	788	Open in IMG/M
3300028792\|Ga0307504_10042874	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1259	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1021948	All Organisms → cellular organisms → Bacteria	1525	Open in IMG/M
3300031740\|Ga0307468_100392040	All Organisms → cellular organisms → Bacteria	1056	Open in IMG/M
3300031740\|Ga0307468_100501493	Not Available	962	Open in IMG/M
3300031740\|Ga0307468_100788708	Not Available	808	Open in IMG/M
3300032180\|Ga0307471_100367293	Not Available	1555	Open in IMG/M
3300032180\|Ga0307471_100728531	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1157	Open in IMG/M
3300032205\|Ga0307472_100614803	All Organisms → cellular organisms → Bacteria	962	Open in IMG/M
3300032205\|Ga0307472_102502661	Not Available	525	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.67%
Host-Associated	Host-Associated	8.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.89%
Plants	Host-Associated → Plants	8.33%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.86%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.47%
Freshwater	Environmental → Aquatic → Freshwater	2.78%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.61%
Loam	Environmental → Terrestrial → Soil → Loam	13.19%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.08%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.08%
Sand	Environmental → Terrestrial → Soil → Sand	1.39%
Lake	Environmental → Aquatic → Freshwater → Lake	0.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	47.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.08%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.39%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.39%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.69%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	40.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.19%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.78%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	2.08%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.39%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.39%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.39%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.69%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.69%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2035918004	Soil microbial communities from sample at FACE Site 2 North Carolina CO2-	Environmental	Open in IMG/M
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005556	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006794	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300015053	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300024310	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK22	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026296	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026343	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCA_3425060	2035918004	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS
GPIPI_03411450	2088090014	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVVDILEMLAVIDGQIAVLEEFPSEGFS
GPIPI_03591900	2088090014	Soil	MLXIGTRAHEIRILSGVAGHLASALEVLLLSEYDRFVGDILEILAVIDGQIAVLEEFRNEEFS
F12B_103754333	3300000443	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAAIDGQIAVLEEFPSEGSS*
JGI25382J37095_100483752	3300002562	Grasslands Soil	MLDAGTRAHQIRALSGVAGYLCSALDVLRINGCDWFTADILEMLAAIDGQIAVLKELGNESPSSSF*
Ga0062595_1006191322	3300004479	Soil	MLNIGTRAHEIRILSGVAGHLASALEVLLLSEYDRFVGDILEILAVIDGQIAVLEEFRNEEFS*
Ga0066677_102196272	3300005171	Soil	MGNTGTRAREIRALAGPAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHEDSSSSLST*
Ga0066683_101941033	3300005172	Soil	MLDTGRHAHQIRALSGVAGYLCSALDVLALNGCDWFTTDILEMLAAIDGQIAVLKELGNESSS*
Ga0066683_104197722	3300005172	Soil	MLNIGTRAHEIRVLSGVAGHLASALDVLLRSECDRFVADILEMLAVIDGQIAVLEEFRNEEFS*
Ga0066679_100215696	3300005176	Soil	MVNTGTRAREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEELGNEDSS*
Ga0066690_108214062	3300005177	Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHEDSSSSLST*
Ga0066685_106108613	3300005180	Soil	MLDTGRHAHQIRALSGVAGYLCSALDVLALNGCDWFTTDILEMLAAIDGQIAVLKKLGNESSS*
Ga0066388_1045632521	3300005332	Tropical Forest Soil	MLCSDTHADQIRVLSGIAAHLVSARDMLVLSGCNWFTAEILEMLAVIDGQIAVLEALGSEDSSPRLGA*
Ga0070700_1013952221	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAV
Ga0070694_1007287691	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MFDTGRRAQEIRALSGVAGHLASALDVLLVSECDWFVADILEILAVIDGQIAVLEEFGNEESS*
Ga0070708_1000485422	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGHEDSSSSLST*
Ga0066686_102159663	3300005446	Soil	MLNIGTRAHEIRVLSGVAGHLASALDVLLRSECDRFVADILDMLAVIDGQIAVLEEFRNEEFS*
Ga0070706_1000320952	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDSSSSLST*
Ga0070707_1000515992	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MGNIGTRAREIRALAGVAGHLASALDALLLSECDWFVADILEMLAVIDGQIAALEEFGSEESS*
Ga0070707_1005360812	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVNPGTRAREIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAIIDGQIAVLEEFGNEDSSSSLGV*
Ga0070698_1009769321	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MGNTGTRAREIRALASVAGHLTSALDVLLLSGCDWFVCDILEMLAVINEQIAV
Ga0070695_1016928461	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MLNTGTRAQEIRVLSGVAGHLDSALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS*
Ga0066707_104235542	3300005556	Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDGQLAVLEEFGNEDSSS
Ga0066698_102571282	3300005558	Soil	MLDTGRHAHQIRALSGVAGYLCSVLDVLALNGCDWFTTDILEMLAAIDGQIAVLKELGNESSS*
Ga0066699_100089816	3300005561	Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEELGHEDSSSSLST*
Ga0068866_112711391	3300005718	Miscanthus Rhizosphere	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS*
Ga0070716_1017440542	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	PRAMLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS*
Ga0066658_108498212	3300006794	Soil	MVNTGTRAREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEDLYLVSARADTTIHPLK*
Ga0066665_109693912	3300006796	Soil	MVNTGTRAREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEDLYLVSARADTTIRH*
Ga0066665_111933931	3300006796	Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHEDSSS
Ga0066665_112556811	3300006796	Soil	SRMVNAGTCAREIRALSGVAGHLASALDVLLLSGCDWFAADEMLAVIDGQIAVLQEFGNEDSSSSLGV*
Ga0075425_1008124091	3300006854	Populus Rhizosphere	MFDTGRRAQEIRALSGVAGHLASALDVLLVSECDWFVADILEMLAVIDGQIAVLEEFGNEESS*
Ga0075425_1013443942	3300006854	Populus Rhizosphere	MLNIGTRAHEIRILSGVAGHLASALEVLLLSEYDRFVGDILEMLAVIDGQIAVLEEFRNEEFS*
Ga0075434_1011197412	3300006871	Populus Rhizosphere	MLNIGTRAHEIRVLSGVAGHLASALEVLLLSEYDRFVGDILEMLAVIDGQIAVLEEFRNEEFS*
Ga0066710_1004012485	3300009012	Grasslands Soil	MVNAGTCAREIRALSGVAGHLASALDVLLLSGCDWFAADEMLAVIDGQIAVLQEFGNEDSSSSLGV
Ga0099829_100077122	3300009038	Vadose Zone Soil	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDFSSSLST*
Ga0099829_100174364	3300009038	Vadose Zone Soil	MFDTGRRAQEIRALSGVAGHLASALDVLLVSECNWFVADILEMLSVIDGQIEVLEEFSDEESS*
Ga0099829_100609342	3300009038	Vadose Zone Soil	MVNAGTRAREIRALSGVAGHLASALDVLLPSGCDWFAADEMLAVIDGQIAVLEEFGNEDSSSSLGV*
Ga0099829_101597702	3300009038	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSSSSLGV*
Ga0099829_101774512	3300009038	Vadose Zone Soil	MGNTSTRAYDICALAGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEEFGNEDSSSSLGV*
Ga0099829_106837222	3300009038	Vadose Zone Soil	MLDTGTRARQIRALSGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEELGSEDSSSSLGG*
Ga0099829_107759232	3300009038	Vadose Zone Soil	MLDTGTRAHQIRTLSRVAGHLASALDVLSLSGCNWFSADILEMLAVIDGHIALLEALGNEGTSSSLGA*
Ga0099829_113799591	3300009038	Vadose Zone Soil	MGNTGTRARQVHALSGVAGHLASALDELLLSGCDWFAADILEMLAVIDGQIAILEESSDEDSSSSLGE*
Ga0099829_117935392	3300009038	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIAVLEEL*
Ga0099828_104828001	3300009089	Vadose Zone Soil	MINTGTRAREIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFSNE
Ga0099828_104850981	3300009089	Vadose Zone Soil	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDFSSSLSP*
Ga0099828_106542692	3300009089	Vadose Zone Soil	MLDTGTRAYQIRALSGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEELGSEDSSSSLGG*
Ga0099828_113910221	3300009089	Vadose Zone Soil	MGNTGTRARQVHALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAILEESGNEDSSSSLGV*
Ga0099827_103825021	3300009090	Vadose Zone Soil	MLDTGTRARQIRALSGVAGHLASALDVLLLSGCDWLTADILEMLAVIDGQIAVLEGLG
Ga0099827_106057742	3300009090	Vadose Zone Soil	MFDTGGRAQEIRTLSGVAGHLASALDVLLVSECDWFVADIVEMLAVIDGQIAVLEEIGNGESS*
Ga0099827_107687062	3300009090	Vadose Zone Soil	MGNTDTRAREIRALAGVAGHLASALDALLLSGCDWFTGDILEMLAVINEQIAAVEEFDREDSSSSLST*
Ga0099827_115461132	3300009090	Vadose Zone Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDGQIAVLEELGNEDSS*
Ga0105058_11953542	3300009837	Groundwater Sand	GTHAPQIRALSGVAGHLASALDVLLRSGCDWFTDDILEMLAVIDGQIAVLEEFGNEDSSSSLGV*
Ga0126384_100432862	3300010046	Tropical Forest Soil	MFDAGGRAQEIRVLSGVAGHLASALDVLLVSECDWFVADILEMLAVIDGQIAVLEEFGSEESP*
Ga0126370_100306444	3300010358	Tropical Forest Soil	MFDAGGRAQEIRVLSGVAGHLASALDVLLVSECDWFVADILEMLTVIDGQIAVLEEFGSEESP*
Ga0126376_110966111	3300010359	Tropical Forest Soil	MLCSDTHADQIRVLSGIAAHLVSARDMLVLSGCTWFTAEILEMLAVIDGQIAVLEALGSEDSSPRLGA*
Ga0126378_133594961	3300010361	Tropical Forest Soil	MLCSDTHADQIRVLSGIAAHLVSARDMLVLSGCTWFTAEILEMLAVIDGQIAVLEALGSEDSSPRLG
Ga0136847_120103883	3300010391	Freshwater Sediment	MLDTGSRAHQIRALFGVAGHLASALEVLSLSGYDWFSADILEMLAVIDRQILLLEELGNESSSSSPGV*
Ga0126383_129190211	3300010398	Tropical Forest Soil	MFDTGRRAQEIRVLSGVAGHLASALDVLLVSECDWFVADILEMLAVIDGQIAVLEEFGSEESP*
Ga0137392_103155333	3300011269	Vadose Zone Soil	MVNAGTRAREIRALSGVAGHLASALDVLLPSGCDWFAADEMLAVIDGQIAVLE
Ga0137392_104121782	3300011269	Vadose Zone Soil	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDSSSSLSP*
Ga0137391_102513462	3300011270	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNKDSASSLGV*
Ga0137391_103242472	3300011270	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIAVLEELGNEDSSSSLGV*
Ga0137393_100079262	3300011271	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSASSLGV*
Ga0137389_103881971	3300012096	Vadose Zone Soil	MVNAGTRAREIRALSGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEEPGSEDSSSSLGG*
Ga0137388_119816621	3300012189	Vadose Zone Soil	MGNTGTRARQVHALSGVAGHLASALDELLLSGCDWFAADILEMLAVIDGQIAILEESGNEDSSSSLGV*
Ga0137383_102432713	3300012199	Vadose Zone Soil	MVNIGTRAREIRALSGVAGHLASALDVLLLSGCDRFAADILELLALIDGQIAVLEEFGNRDFS*
Ga0137363_100088543	3300012202	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIAVLEEFGSDGFS*
Ga0137399_115497731	3300012203	Vadose Zone Soil	MVNTGTRAREIRALSRAAAHLASALDVLLLSGCDWFVADILEMLAVIDGQIAVLDELGNEDSSSSLGV*
Ga0137374_100334943	3300012204	Vadose Zone Soil	MVGSGMRARELRALSGVAGHLASALDVLLLSGSDRFVGDILELLAVIDGQIAVLEEFGNEGFS*
Ga0137374_102715253	3300012204	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASAIDELSLSGCDWFAADILGMLAVIDGQIAALEEFGNEDSSSSLGV*
Ga0137386_104981772	3300012351	Vadose Zone Soil	GTRAREIRALSGVAGHLASALDVLLLSGCDRFAADILELLALIDGQIAVLEEFGNRDFS*
Ga0137367_101351293	3300012353	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASVIDELSLSGCDWFAADILGMLAVIDGQIAALEEFGNEDSSSSLGV*
Ga0137367_108474621	3300012353	Vadose Zone Soil	RALSGVAGHLASALDVLLLSGSDRFVGDILELLAVIDGQIAVLEEFGNEGFS*
Ga0137369_100405085	3300012355	Vadose Zone Soil	MVGSGMRARELRALSGVAGHLASALDMLLLSGSDRFVGDILELLAVIDGQIAVLEEFGNEGFS*
Ga0137371_103211893	3300012356	Vadose Zone Soil	MVNTGTRAREIRALSGVAGHLASALDVLLLNGCDWFAADILEMLAVIDGQIAVQEELGNEDSS*
Ga0137385_103687362	3300012359	Vadose Zone Soil	MFDTGGRAQEIRTLSGVAGHLASALDVLLVSECDWFVADIVEMLAVIDGEIAVVEEIGNGESS*
Ga0137360_102656122	3300012361	Vadose Zone Soil	LTGSVLRDYQAAMVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIAVLEEFGSDGFS*
Ga0137361_116619211	3300012362	Vadose Zone Soil	GRMVNTGTRAREIRALSGVAGHLASALDVLLHSGCDWFAADILEMLAIIDGQIAVLEEFGNEDSSSSLGV*
Ga0137390_100115871	3300012363	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSSS
Ga0137390_103486583	3300012363	Vadose Zone Soil	PSGRMVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNKDSASSLGV*
Ga0137390_118391522	3300012363	Vadose Zone Soil	MLDTGTRANQIRALSGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEELGSEDSSSSLGG*
Ga0157334_10097551	3300012509	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLVSEYDRFVADILEMLAVIDGQIAVLEEFRSEGFS*
Ga0137373_104494932	3300012532	Vadose Zone Soil	MFDTGGRAQEIRTLSGVASHLASALDVLLVSECDWFVADIVEMLAVIDGQIAVLEEIGNGESS*
Ga0137359_101909412	3300012923	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIAVLEEFGSEGFS*
Ga0137416_108966481	3300012927	Vadose Zone Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDGQIAVLDELGNEDSSSSLGV*
Ga0137404_103078873	3300012929	Vadose Zone Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDRQIAVLDELGNEDSSSSLGV*
Ga0137404_115244871	3300012929	Vadose Zone Soil	APEIGALSGVAGHLSSALDVLLLSGCDWFVADIRELLAVIDGQIAVLEEL*
Ga0137404_121391661	3300012929	Vadose Zone Soil	MGNTGTRAPEIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDSSSSLST*
Ga0153915_110964461	3300012931	Freshwater Wetlands	MFDTGTRAHEIRALSGLAGHLASALDALSLSGCDSFRADIVEMLAAIDGQIALLEALGNEGSSSSLGL*
Ga0153915_115918372	3300012931	Freshwater Wetlands	MFDTGMRALEIRALSRLAGHLASALDALSLSGCDSFRADILEMLAAIDGQIALLEALGNEGSSSTLGV*
Ga0153916_100159196	3300012964	Freshwater Wetlands	MFDTGTRAHEIRALSGLAGHLASALDALSLSGCDSFRADIVEMLAAIDGQIALLEAIGNEGSASSLGL*
Ga0134076_103317321	3300012976	Grasslands Soil	RMLDTGRHAHQIRALSGVAGYLCSALDVLALNGCDWFTTDILEILAAIDGQIAVLKKLGNESSS*
Ga0163162_104950043	3300013306	Switchgrass Rhizosphere	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAAIEGQIAVLEEYPSEGFS*
Ga0157375_114500771	3300013308	Miscanthus Rhizosphere	LNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS*
Ga0075302_11573431	3300014269	Natural And Restored Wetlands	MWITSVLTAAQDGVTKRRMLDIGTGGDQIRVLSGVAGHLASALDVLSLGGCDWFAADILEMLAAIDGQIAALQELGDTGSDLAG*
Ga0137405_10674831	3300015053	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCEWFVADILELLAVIDGQIA
Ga0137403_106807002	3300015264	Vadose Zone Soil	MVNTGTHAREIRALSGVAGHLASALDVLLLSGCDWFVADIRELLAVIDGQIAVLEEL*
Ga0132258_105903102	3300015371	Arabidopsis Rhizosphere	MFDTGRRAQEIRALSGVAGHLASALDELLVSECDWFVADILEMLAVIDGQIAVLEEFGNEESS*
Ga0132256_1000609135	3300015372	Arabidopsis Rhizosphere	MLNTGTRAQEIRVLSGVAGHLASALDVLLVSEYDRFVADIIEMLAVIDGQIAVLEESRSEGFS*
Ga0132257_1001934543	3300015373	Arabidopsis Rhizosphere	AQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQITVLEEFRSEGFS*
Ga0132255_1002657742	3300015374	Arabidopsis Rhizosphere	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQITVLEEFRSEGFS*
Ga0132255_1006158141	3300015374	Arabidopsis Rhizosphere	GTRAQEIRVLSGVAGHLASALDVLLVSEYDRFVADIIEMLAVIDGQIAVLEESRSEGFS*
Ga0134083_104956102	3300017659	Grasslands Soil	MLNIGTRAHEIRVLSGVAGHLASALDVLLRSECDRFVADILDMLAVIDGQIAVLEEFRNEEFS
Ga0066655_101425392	3300018431	Grasslands Soil	MLNIGTRAHEIRVLSGVAGHLASALDVLLRSECDRFVADILEMLAVIDGQIAVLEEFRNEEFS
Ga0066662_100070773	3300018468	Grasslands Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHEDSSSSLST
Ga0066662_129341001	3300018468	Grasslands Soil	MVNTGTRAREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEELGNEDSS
Ga0066669_119885501	3300018482	Grasslands Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIA
Ga0247681_10458732	3300024310	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVL
Ga0207684_100200527	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MFDTGRRAQEIRALSGVAGHLASALDVLLVSECDWFVADILEILAVIDGQIAVLEEFGNEESS
Ga0207684_100446712	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDSSSSLST
Ga0207684_103030091	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MLNIGTRAHEIRVLSGVAGHLASALEVLLLSECDRFVADILEMLAVIDGQIAVLEEFRNEEFS
Ga0207646_100780305	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MVNPGTRAREIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAIIDGQIAVLEEFGNEDSSSSLGV
Ga0207646_104547181	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MGNIGTRAREIRALAGVAGHLASALDALLLSECDWFVADILEMLAVIDGQIAALEEFGSEESS
Ga0207646_106197402	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGHEDSSSSLST
Ga0207665_114286732	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	LNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS
Ga0207648_120503912	3300026089	Miscanthus Rhizosphere	RAMLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS
Ga0209235_10664572	3300026296	Grasslands Soil	MLDTGRHAHQIRALSGVAGYLCSALDVLALNGCDWFTTDILEMLAAIDGQIAVLKKLGNESSS
Ga0209237_10197542	3300026297	Grasslands Soil	MLDAGTRAHQIRALSGVAGYLCSALDVLRINGCDWFTADILEMLAAIDGQIAVLKELGNESPSSSF
Ga0209471_13365232	3300026318	Soil	AREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEELGNEDSS
Ga0209804_12763271	3300026335	Soil	MGNTGTRAREIRALAGAAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHE
Ga0209159_11860131	3300026343	Soil	MGNTGTRAREIRALAGPAGHLASALDVLLLSGCDWFTGDILEMLAVINEQIAVLEEFGHEDSSSSLST
Ga0257156_10287562	3300026498	Soil	MLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGSS
Ga0209160_11002503	3300026532	Soil	MVNTGTRAREIRALSGVAAHLTSALDVLLLSGCDWFVADILEMLAVIDGQIAVQEDLYL
Ga0209180_100176283	3300027846	Vadose Zone Soil	MFDTGRRAQEIRALSGVAGHLASALDVLLVSECNWFVADILEMLSVIDGQIEVLEEFSDEESS
Ga0209180_100294642	3300027846	Vadose Zone Soil	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDFSSSLST
Ga0209180_101992111	3300027846	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSSSSLGV
Ga0209180_105417531	3300027846	Vadose Zone Soil	VYGLPSSRMVNAGTRAREIRALSGVAGHLASALDVLLPSGCDWFAADEMLAVIDGQIAVLEEFGNEDSSSSLGV
Ga0209701_101693722	3300027862	Vadose Zone Soil	MINTGTRAREIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLEEFGNEDSSSSLGV
Ga0209701_101815852	3300027862	Vadose Zone Soil	MLDTGTRARQIRALSGVAGHLASALDVLLLSGCDWFTADILEMLAVIDGQIAVLEELGSEDSSSSLGG
Ga0209283_108226142	3300027875	Vadose Zone Soil	LGLPSGRMGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGREDFSSSLGT
Ga0209283_108237161	3300027875	Vadose Zone Soil	MVNTGTRARQIRALSGVAGHLASALDVLLLSGCDWFAADILEMLAVIDGQIAVLE
Ga0209590_102200951	3300027882	Vadose Zone Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDGQIAVLEQLGNEDSS
Ga0209590_110333241	3300027882	Vadose Zone Soil	MGNTDTRAREIRALAGVAGHLASALDALLLSGRDWFTGDILEMLAVINEQIAAVEEFDREDSSSSLST
Ga0137415_107494901	3300028536	Vadose Zone Soil	MVNTGTRAREIRALSGVAAHLASALDVLLLSGCDWFVADILEMLAVIDGQIAVLDELGNEDSSSSLGV
Ga0307504_100428742	3300028792	Soil	MGNTGTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVIDEQIAVLEEFGHEDSSSSLST
(restricted) Ga0255312_10219482	3300031248	Sandy Soil	MGNTSTRAREIRALAGVAGHLASALDVLLLSGCDWFVCDILEMLAVINEQIAVLEEFGHEDSSSSLST
Ga0307468_1003920402	3300031740	Hardwood Forest Soil	MLNTGTRPQEIRVLSGVAGHLTSALDALLLGECDLFVADILGMLAVIDSQIAVLEES
Ga0307468_1005014931	3300031740	Hardwood Forest Soil	PRAMLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS
Ga0307468_1007887082	3300031740	Hardwood Forest Soil	MVNTDRRAREICALAGVAGHLASALDVLLLSECDWFVADILEMLAVIDGQIAVLEEFGTEEFS
Ga0307471_1003672933	3300032180	Hardwood Forest Soil	LTRAMLNTGTRAQEIRVLSGVAGHLASALDVLLLSEYDRFVADILEMLAVIDGQIAVLEEFPSEGFS
Ga0307471_1007285311	3300032180	Hardwood Forest Soil	MFNTGRRAQEIRALAGVAGHLASALDVLLVSECNWFVADILEMLSVIDGQIAVLEEFGNEESS
Ga0307472_1006148031	3300032205	Hardwood Forest Soil	KRAMFDTGRRAHEIRVLSGVAGHLASALDVLLVSECDWFVADILEMLAVIDGQIAVLEEFGNEESEDVL
Ga0307472_1025026611	3300032205	Hardwood Forest Soil	MLNTGRRAQEIRVLSGVAGHLTSALDALLLSECDQFVADILGMLAVIDCQIAVLEESRHEEFS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters