Metagenome / Metatranscriptome Family F051364

Overview

Basic Information

• Family ID: F051364
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 144
• Average Sequence Length: 39 residues
• Representative Sequence: MKKVSTAVAKQSRNISQQKLTIGLDLGDRNSWYCVLD
• Number of Associated Samples: 128
• Number of Associated Scaffolds: 144

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 95.10 %
• % of genes near scaffold ends (potentially truncated): 88.19 %
• % of genes from short scaffolds (< 2000 bps): 79.86 %
• Associated GOLD sequencing projects: 120
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (93.056 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (14.583 % of family members)
• Environment Ontology (ENVO): Unclassified (22.917 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (45.833 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Globular
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 29.23%
  β-sheet: 0.00%
  Coil/Unstructured: 70.77%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 144 Family Scaffolds
PF02371	Transposase_20	6.25
PF00072	Response_reg	2.78
PF01548	DEDD_Tnp_IS110	2.78
PF03544	TonB_C	1.39
PF07676	PD40	1.39
PF13231	PMT_2	1.39
PF00893	Multi_Drug_Res	0.69
PF13431	TPR_17	0.69
PF01261	AP_endonuc_2	0.69
PF11941	DUF3459	0.69

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 144 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	9.03
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.78
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	1.39
COG5398	Heme oxygenase	Coenzyme transport and metabolism [H]	0.69
COG0238	Ribosomal protein S18	Translation, ribosomal structure and biogenesis [J]	0.69
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.69
COG3230	Heme oxygenase	Inorganic ion transport and metabolism [P]	0.69
COG2972	Sensor histidine kinase YesM	Signal transduction mechanisms [T]	0.69
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.69
COG2124	Cytochrome P450	Defense mechanisms [V]	0.69

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.06 %
Unclassified	root	N/A	6.94 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.06 %
Unclassified	root	N/A	6.94 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.06 %
Unclassified	root	N/A	6.94 %

Level 4

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	65.28 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.39 %
Unclassified	root	N/A	6.94 %

Level 5

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	20.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	19.44 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.08 %

Level 6

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.36 %
Acidobacteria bacterium 13_2_20CM_56_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	2.08 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	19.44 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.69 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	1.39 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.69 %

Level 7

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.36 %
Acidobacteria bacterium 13_2_20CM_56_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	2.08 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	19.44 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.69 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.69 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.39 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.69 %

Level 8

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.36 %
Acidobacteria bacterium 13_2_20CM_56_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	2.08 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.69 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.69 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2.08 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	14.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.39 %
Verrucomicrobia subdivision 3	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3	0.69 %

Level 9

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.36 %
Acidobacteria bacterium 13_2_20CM_56_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	2.08 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.69 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.69 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2.08 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	14.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
unclassified Verrucomicrobia subdivision 3	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3	0.69 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.39 %

Level 10

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	17.36 %
Acidobacteria bacterium 13_2_20CM_56_17	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	2.08 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.69 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.69 %
Candidatus Koribacter versatilis Ellin345	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis → Candidatus Koribacter versatilis Ellin345	0.69 %
Candidatus Sulfotelmatobacter kueseliae	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	14.58 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.39 %
Unclassified	root	N/A	6.94 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1.39 %
Verrucomicrobia subdivision 3 bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobia subdivision 3 → unclassified Verrucomicrobia subdivision 3 → Verrucomicrobia subdivision 3 bacterium	0.69 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003505|JGIcombinedJ51221_10342096	All Organisms → cellular organisms → Bacteria → Acidobacteria	608
3300004092|Ga0062389_100480988	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1384
3300005179|Ga0066684_10719435	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	667
3300005353|Ga0070669_101049112	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	701
3300005530|Ga0070679_101801610	All Organisms → cellular organisms → Bacteria → Acidobacteria	560
3300005541|Ga0070733_10155299	All Organisms → cellular organisms → Bacteria → Acidobacteria	1486
3300005576|Ga0066708_10234019	All Organisms → cellular organisms → Bacteria	1163
3300005614|Ga0068856_100299388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_2_20CM_56_17	1626
3300005614|Ga0068856_102521348	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	521
3300005617|Ga0068859_100580663	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae	1214

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.72%
Host-Associated	Host-Associated	15.28%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	18.06%
Plants	Host-Associated → Plants	15.28%
Terrestrial	Environmental → Terrestrial	66.67%

Category

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	11.11%
Peat	Environmental → Terrestrial → Peat	2.08%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.25%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.33%
Roots	Host-Associated → Plants → Roots	0.69%
Sediment	Environmental → Aquatic → Sediment	6.94%
Soil	Environmental → Terrestrial → Soil	64.58%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.86%
Loam	Environmental → Terrestrial → Soil → Loam	7.64%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.08%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	47.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.94%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.25%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.11%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.03%

Subtype

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.86%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.53%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.86%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	2.08%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.39%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.39%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.69%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	0.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.08%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.39%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.08%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.17%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.69%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.69%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.08%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.08%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.47%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.39%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.69%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.69%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.69%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.69%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.08%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.86%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.25%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_103420962	3300003505	Forest Soil	MKKVSTRAAAQSRNISQQKLTIGLDLGGRNSWYCAVDEAGQI
Ga0062389_1004809881	3300004092	Bog Forest Soil	AMKKISTVAAKQSRNFSQPKLTIGLDLDDRSNWYCVLEERS*
Ga0066684_107194352	3300005179	Soil	MKKISIRAAAQSRNISQQKLTLGLDLGDRNSWYCVVDEAGQIQ
Ga0070669_1010491121	3300005353	Switchgrass Rhizosphere	MKKVSTTTAKQSRNISQQKRTIELDLGDRNSWCCVLDEVGQSSV*
Ga0070679_1018016101	3300005530	Corn Rhizosphere	MKKVSTAVVRQSRNICPPKLTIGLDLGDRNSWYCVLNGAG
Ga0070733_101552993	3300005541	Surface Soil	MKKVSTAATKQSRNISQQQLTIGLDLGDRNAWSCVLDEAGRI
Ga0066708_102340194	3300005576	Soil	MKKVSTAATKQSRNISQQKLTIGLDLGDRNSWYCV
Ga0068856_1002993881	3300005614	Corn Rhizosphere	MKKVSTAAAKQSRNVLQSNLTIGLDLGDRSSCYCVLDEEKLCGV*
Ga0068856_1025213481	3300005614	Corn Rhizosphere	MKKTSTAVAKQSRNICRQTLTIGLDLGDRNSRYCVLDEVGADTTGTACAN
Ga0068859_1005806633	3300005617	Switchgrass Rhizosphere	MKKVSIAATRQSRNISQQKLTIGLDLGDRNSWYCV
Ga0066903_1006606341	3300005764	Tropical Forest Soil	VKNSSTAVTMASRNISQQKLPIGSDPGDRNRWYCVVDTAGQIQVEQ
Ga0070766_103358841	3300005921	Soil	MKKVSTVAAKPGKKISQQKLTVGLDLGDRNSWYCVLDE
Ga0070766_110452821	3300005921	Soil	RPAMKKVSTVAAKPSKKISQQKLAVGLDLGDRNSWYCVVDDTGQIQLE*
Ga0075024_1004557932	3300006047	Watersheds	MKKISTAEARQTRNVRDQHLTIGLDLGDRSSWYCGLE
Ga0075029_1009528902	3300006052	Watersheds	MKKVSIRAAAQSRNISQQKLTIGLDLGDRNSWYCVVDEAGQIQ
Ga0075029_1010059491	3300006052	Watersheds	MKKVSTRAGAQSGNISQQRLTIGLDLGDRNSWYCVLDES
Ga0075029_1012990192	3300006052	Watersheds	MKKGSTRAAAQSGNISQQKLTIGLDLGDRNCWYCVVDEAGQIR
Ga0075017_1005570302	3300006059	Watersheds	MKKVSIRAAAQSRNISQQKLTIGLDLGDRNSWYCVVDE
Ga0075019_101447683	3300006086	Watersheds	MKKVSTRAAAQSGNISQQKLTIGLDLGDRNSWYCVVDEGGQIQL
Ga0075014_1002981302	3300006174	Watersheds	MKKVSTVGTQQTMNISRQKLTIGLDLGDRNSWYCV
Ga0070765_1003839313	3300006176	Soil	MKKVSTVAAQRSTKISRQKLTVGLDLGDRSSWYCVLDET
Ga0097621_1009078321	3300006237	Miscanthus Rhizosphere	MKKVSTVAGKQSRNISRQTLTIGLDLGDRNSWYCVLDE
Ga0066658_103089392	3300006794	Soil	MKKVSTPAVKATKHFSQPKLTIGLDLGDRSSWYCLLGNL*
Ga0079221_101407133	3300006804	Agricultural Soil	MKKVSTILAKQSRKSSQRELIVGLDLGDRNSWYCVLDEAATYN*
Ga0075436_1005270611	3300006914	Populus Rhizosphere	MKKVSTVAARQRKTFSQPTLTIGLDLGDRNSWYCV
Ga0099830_115489621	3300009088	Vadose Zone Soil	MKKISTVMAKKVEKNASQKLTIGLDLGDRFSWYCV
Ga0105248_102121381	3300009177	Switchgrass Rhizosphere	TTAKQSRNISQQKRTIELDLGDRNSWCCVLDEVGQSSV*
Ga0116225_14240921	3300009524	Peatlands Soil	MKQVSRVAAKPSRNNSQPKLTIGLDLGDRNSWYCVVDEAGQIRLE
Ga0105237_106391071	3300009545	Corn Rhizosphere	TAAAKQSRNVLQSNLTIGLDLGDRSSCYCVLDEEKLCGV*
Ga0105237_114742111	3300009545	Corn Rhizosphere	MKKISTVAVKQNRSFSEQKLTIGLDLGDRSSWYVEAGEIRLEQTLG
Ga0116137_11936942	3300009549	Peatland	MKKISTVARKQSRNFSEQKLTIGLDLGDRSSWYCVLNE
Ga0105238_102092942	3300009551	Corn Rhizosphere	MKKVSTTLAKQSRKNSQQKLTVGLDLGDRNSWYCV
Ga0116102_11231741	3300009632	Peatland	MKKISSAVTMESRNFSRQQKLTIGLDLGDRHSWYCVVDE
Ga0116106_11361751	3300009645	Peatland	MKKISSAVTMESRNFSRQQKLTIGLDLGDRHSWYCV
Ga0126380_101012682	3300010043	Tropical Forest Soil	MKKGSSAAAQQSRNISQQKLTIGLDLGERNSRYCVLDESG
Ga0126384_110232051	3300010046	Tropical Forest Soil	MKKVSTVAAKASKKISAQKLTIGLDLGDRNSWYCVLD
Ga0126384_114917662	3300010046	Tropical Forest Soil	MKKVSTATANEIRNFSEQKLTIGLDLGDRSSCYCLLDE
Ga0126382_107702442	3300010047	Tropical Forest Soil	MKKSSPAAVRQSRNISRQTLIIGLDLGDRNSWYYVLDEAGQIQLE*
Ga0126372_100496906	3300010360	Tropical Forest Soil	MKKVSTAAAQQSRNISQQKLTIGLDLGDRNSLAALHE*
Ga0126372_105436262	3300010360	Tropical Forest Soil	MKKVSTAAMKQGKNISRQRLTIGLDLGDRNSWYCVLDE
Ga0126378_101040983	3300010361	Tropical Forest Soil	MKKGSTVPESSRNISRQTLTIGLDSGGRNSWYCLVYEVGPI
Ga0134125_102197983	3300010371	Terrestrial Soil	MKKVSTVVTMQSRNISQQKLSIGLDLGDRNSWYCVLDE
Ga0126381_1019521952	3300010376	Tropical Forest Soil	MKKGNTAAAKQRRNISQQQLTIGLDLEDRSSWCCVMDEAGSVVQ
Ga0134124_121931271	3300010397	Terrestrial Soil	MKKTSTAVARQGRNISRQQLTIGLDLGDRNSWYCV
Ga0138578_10786172	3300011110	Peatlands Soil	MKKVSTVAAKPSRNNSQPKLTIGLDLGDRNSWYCVVDEAG
Ga0137362_112042341	3300012205	Vadose Zone Soil	MKKVSTGAGRQAKNFSEQKLTIGLDLGDRSSWYCVLD
Ga0137376_105759371	3300012208	Vadose Zone Soil	MKKISTAVAKQSRNFSQQKLTIGLDLGDRSSCYCVL
Ga0137378_100855052	3300012210	Vadose Zone Soil	MKKVSTRAAAQSRDISQQKLTIGLDLGDRNSWYCVVDEAG
Ga0137361_109477801	3300012362	Vadose Zone Soil	MKKVSTAATKPSKNVSQSNLTIGLDLGDRSSCYCVL
Ga0137404_108027861	3300012929	Vadose Zone Soil	MKKVSTAATKQTNNFGEQKLTIGLDLGDRSSWYCMLDGS
Ga0126369_103525751	3300012971	Tropical Forest Soil	MKKVSTAAKKQGRNISRQTLTIGLDLGDRNSWYCVL
Ga0126369_121024461	3300012971	Tropical Forest Soil	MKKNSSAAAMQGRNISRQTLTIGLDLGDRNSWYCV
Ga0126369_128021631	3300012971	Tropical Forest Soil	MKKVSTAVAKQSRNISRQKLTIGLDLGDRNSWYCVL
Ga0134110_104181922	3300012975	Grasslands Soil	MKKVSTAVSKGTKNFPEQKLTIGLDLGDRSSWYCVLD
Ga0157372_102454391	3300013307	Corn Rhizosphere	MKKVSTTLAKQSRKNSQQKLTVGLDLGDRNSWYCVL
Ga0181537_100446194	3300014201	Bog	MKKVSTVAAQQSRNISQAKLTIGLDLGDRNSWSRWHRRG*
Ga0182015_100459993	3300014495	Palsa	VKKVSSAVEKVTKNFCQQKLTIGLDLSDRSSWYCSARRSG*
Ga0182024_101731182	3300014501	Permafrost	MKKISTVTLKQSKNISGEKLMIGLDLGDRSSWYCVPSAH*
Ga0157376_100150471	3300014969	Miscanthus Rhizosphere	MKKVSTVAAKQSRNISQQKLTIGLDLGDRNSWYCV
Ga0137403_105563032	3300015264	Vadose Zone Soil	MKKVSTAATKQTNNFGEQKLTIGLDLGDRSSWYCMLDG
Ga0132258_112356211	3300015371	Arabidopsis Rhizosphere	MKKVSTAATKQSRNISGQKLTIGLDLGDRNSWYCVLD
Ga0132255_1001347776	3300015374	Arabidopsis Rhizosphere	MKKVSTAATKQSRNISRQKLTIGLDLGDRNSWYCVLDE
Ga0182041_113634432	3300016294	Soil	MKKVSTAVAKLNRNVSQQKLTIGLDLGDRNSWYCVLDEA
Ga0182035_117949981	3300016341	Soil	MKKVSTPSTKQGRNISRQSLTIGLDLGDRNSWYCVLD
Ga0182034_108852152	3300016371	Soil	MKQVSTAVNNQGRIFPQPTLTIGLDLGDRKSWYCVLDEAGQIQLA
Ga0182039_112573522	3300016422	Soil	MKKVSTEAAKVRRKISRQKVTVGWDLGDRNSWYCVLDESGQIQ
Ga0182038_121757641	3300016445	Soil	MKKVSTVAVKRIRNVSQQKPTLEKLTIGLDLGDRWSWYCVLDEAG
Ga0187818_101698951	3300017823	Freshwater Sediment	MRKVSTVAATQSKNFSGQKLTIGLDLGARSSWYCVL
Ga0187824_100156244	3300017927	Freshwater Sediment	MKKVSTAAAKQSRNFSQQKLTIGLDLGDRNSWYCVVDE
Ga0187819_100039148	3300017943	Freshwater Sediment	MKKVSTRTAKQSRNISQQKLTIGLDLGDRNSWYCVLD
Ga0187819_103329782	3300017943	Freshwater Sediment	MKKGSTRAAAQSRNISQQKLTIGLDLGDRNSWYCVVDESGQ
Ga0187819_103508941	3300017943	Freshwater Sediment	MKKISTAAAKRSRNSSEQKLTIGLDLGDRSSWYCV
Ga0187819_108595462	3300017943	Freshwater Sediment	MKKGSTAAAKQSTIFSQQKLTIGLDLGDRSSWYCVLDERGELRL
Ga0187879_102619661	3300017946	Peatland	MKKVSTAAAKQSKNFSQQKLTIGLDLGDRNSWYCVVD
Ga0187776_100994432	3300017966	Tropical Peatland	MKKVSTVVTRQRKNISQLKLTIGLDLGDRNSWYCVLEEVG
Ga0187782_100237587	3300017975	Tropical Peatland	MKKVSTAVAKQNRNFSQQKLTIGLDLGDRNSWYCVMDE
Ga0187823_100732131	3300017993	Freshwater Sediment	MKKVSRAVTKQSKNISQPTLTIGLDLGDRNSWYCV
Ga0187885_102340721	3300018025	Peatland	MKKISTVGAKQSKKFREQKLTIGLDLGDRSSWYCVLD
Ga0187867_106328151	3300018033	Peatland	MKKISTLAAQKVEKIEGQKLTIGLDLGDRTSWYCV
Ga0187771_112181481	3300018088	Tropical Peatland	MKKGSTAATKQGRNISRQTLTIGLDLGDRNSWYCVL
Ga0182025_13392941	3300019786	Permafrost	MKKVSTAAAKQSKNVSQQKLTSGLDLGDRKQLVLRGG
Ga0210403_1000318511	3300020580	Soil	MKKVSIRAAAQSRNISQQKLTIGLDLGDRNSWYCVVD
Ga0210399_102289932	3300020581	Soil	MKKGSTAATKPSRNISQQKLTLGLDLGDRNSWYCVVDQAGQIQLE
Ga0210400_101482011	3300021170	Soil	MKNVSTAAAKQIRNFSEQKLTIGLDLGDRSSWYCV
Ga0210405_102473451	3300021171	Soil	MEKVSTAAAKSSSNISQQRLTIGLDLGDRNTWYCVVDETGQMQQ
Ga0210396_100708701	3300021180	Soil	MRKVSIVTAAQSRNISQQKLTIGLDLGDRNSWYCVVDE
Ga0210393_111777652	3300021401	Soil	MKKVSTAATKQSRNISQQRLTIGLDLGDRNSCYCVL
Ga0210393_114808032	3300021401	Soil	MKKISTVAVKQSKNFSEQKLTIGFDLGDRSSWYCVL
Ga0210394_100003241	3300021420	Soil	MKKVSTVAAKPSKKISQQKLTVGLDLGDRNSWYCVLDE
Ga0210384_100907561	3300021432	Soil	MKKVSTVTAAQSRNVSQQKLTIGLDLGDRNCWYCVVDEAG
Ga0210410_100001464	3300021479	Soil	MKKVSTAGAKQTKNFADQKLTIGLDLGDRSSWYCALNEEVVG
Ga0210410_110632541	3300021479	Soil	MKKVSTAVAKQSRNISQQKLTIGLDLGDRNSWYCVLD
Ga0210409_10000054209	3300021559	Soil	MRKVSIVTAAQSRNISQQKLTIGLDLGDRNSWYCVVDEGGQIRL
Ga0126371_1001558413	3300021560	Tropical Forest Soil	MKKVSTAIAQPCRNISQPKRTIGLDLGDRNSWYCVL
Ga0242648_10314261	3300022506	Soil	MKKVSTMAAKPSKKILQQRLTIGLDLGDRNSWYCFEAVASHS
Ga0242662_103159461	3300022533	Soil	MKKVSTVAVKQSRNISQQKLTIGLDLGDRNSWYCVVDE
Ga0222756_10916971	3300022709	Soil	MKKVNTAATKQSRNISQQPLTIGLDLGDRNSWYCVLDE
Ga0222622_109509983	3300022756	Groundwater Sediment	MKKVSTAARKQINNFGEQKLTIGLDLSDRSSWYCMLD
Ga0207692_107491862	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKKVSTVAAKPGKKISQQKLTVGLDLGDRNSWYCVLD
Ga0207685_103051221	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MKKTSTAASKQSGNISQQKLTIGLDLGDRNSWYCV
Ga0207694_112348701	3300025924	Corn Rhizosphere	MKKVSTTLAKQSRKNSQQKLTVGLDLGDRNSWYCVLD
Ga0207686_112501621	3300025934	Miscanthus Rhizosphere	MKKVSTTTAKQSRNISQQKRTIELDLGDRNSWCCV
Ga0207704_102427491	3300025938	Miscanthus Rhizosphere	MKKVSIAATRQSRNISQQKLTIGLDLGDRNSWYCVL
Ga0207651_107168932	3300025960	Switchgrass Rhizosphere	MKKVSATRAKRSRNISQQKRTIGLDLVDPNRWYCGL
Ga0207677_115598192	3300026023	Miscanthus Rhizosphere	MKKVSTVGAKPSKKISQQKLTVGLDLGDRNSWYCVLDES
Ga0207702_101690421	3300026078	Corn Rhizosphere	MKKVSTAAAKQSRNVLQSNLTIGLDLGDRSSCYCVLDEEKLCGV
Ga0209890_101646052	3300026291	Soil	MKKVSIAKTKQRRNIFQQKLTIGLDLGDRNSWYCMVDE
Ga0209577_101911541	3300026552	Soil	MKKVSTAARCEFGKFAGQRLTIGMDLGDRSSWYCVLDE
Ga0209418_10217271	3300027371	Forest Soil	MKKGSTAATNRSRSLSQQKLTIGLDRGDRSSWYCV
Ga0209117_10441012	3300027645	Forest Soil	MKKISTAAAKATKNFFQQKLTIGLDLGDRSSWYCLLDEVC
Ga0209039_101261072	3300027825	Bog Forest Soil	MKKSSTVAAASNKNFERKLTIGLDLGDRSSWYCVLDEA
Ga0209517_101156441	3300027854	Peatlands Soil	MKKISTVAAKQSRNCSEQKLTIGLDLGDRSSWYCVLD
Ga0209517_101819691	3300027854	Peatlands Soil	MKKVSTVGAKPSRNISQQRLTMGLDLGDRNSWYCVVDEAGQIQL
Ga0209579_104945171	3300027869	Surface Soil	MKKVSTAVAKQSRNISRQRLTIGLDLGDRNSWYCV
Ga0209067_101331461	3300027898	Watersheds	MKKSSSAATRQSRNISRQTLTIGLDLGDRNSWYCVLDE
Ga0209415_103802941	3300027905	Peatlands Soil	MKKISTVARKQIRNFSEQKLTIGLDLGDRSSWYCVL
Ga0209583_105101191	3300027910	Watersheds	MKKISTVTTKKVEKNASQKLTIGLDLGDRSSWYCVLD
Ga0268264_100631521	3300028381	Switchgrass Rhizosphere	MKKVSIAARKQSRNISQQKLTIGLDLGDRNSWYCVLDEA
Ga0308309_107529982	3300028906	Soil	MKKVSAIAAKPSKKISQERLTIGLDPGDRNSWYCVLDESGGIQRE
Ga0265324_102645332	3300029957	Rhizosphere	MKKVSTRALAQSKNISQQKLTIGLDLGDRNSWYCVVDEA
Ga0265461_113458011	3300030743	Soil	MKKVSAVAATQSKNFREQKLTIGLDLGDRSSWYCVL
Ga0302324_1006328833	3300031236	Palsa	MKKISTVAAKQNRNFSQPKLTIGLDLGDRSSWYCLLD
Ga0318560_100671031	3300031682	Soil	MKKVSTAALKQSRNFSQPQLTIGLDLGDRSSCYCVL
Ga0310686_1020751315	3300031708	Soil	MKKVSTRAAAQSRNISQQKLTIGLDLGDRNSWYCVVD
Ga0307476_104487262	3300031715	Hardwood Forest Soil	MKKVSTAVSKQSRIFSQPTQTIGFDLGDRNSWYCVPDEAGQIQLEQRVRTNA
Ga0307474_102738512	3300031718	Hardwood Forest Soil	MKKVSTVTAAQSSNISQQKLTIGLDLGDRNCWYCV
Ga0307468_1014281063	3300031740	Hardwood Forest Soil	MKNVSTGATKQSRNISQQKLTIGLDLGDRNSWYCVMDEA
Ga0318547_106397451	3300031781	Soil	MKKGSTVAAKQGRNFKHQKLTIGLDLGDRASWYCVLEQTGAVL
Ga0302319_1002772413	3300031788	Bog	RRPAMKKVSTVAAKASKKISQQKLTVGLDLGDRNSW
Ga0307473_101144351	3300031820	Hardwood Forest Soil	MKGSTTAAKESRDFSHQKLTIGLDLGDRSSWYCVLDEAGR
Ga0306923_115561711	3300031910	Soil	MKKVSTAATMQSRDFCVQQKLTIGLDLGDRHSWYCVLDEAGKVQ
Ga0310910_101682561	3300031946	Soil	MKKVSTVAAKQAKNLPARSFTEQKLTVGLDLGDRSSWYCVIDESGAVQM
Ga0307479_106349063	3300031962	Hardwood Forest Soil	MKKGSTIAARASRKISERKLTIGLDLGDRSSCYCVLD
Ga0310911_105995861	3300032035	Soil	MKKVSTKAGKQTKNFTCQRLTIGLDLSDRSSWYCVLDESG
Ga0318532_103309781	3300032051	Soil	MKKVSTAALKQSRNFSQPQLSIGLDLGDRSSCYCVL
Ga0307471_1033175282	3300032180	Hardwood Forest Soil	MKKVSIAAARPSRKISAQKLTVGLDLGDRSSWYCVL
Ga0335085_103569413	3300032770	Soil	MKKVSTAAMKQSRNISRQKLTIGLDLGDRNSWYCVL
Ga0335082_100324545	3300032782	Soil	KQSRNISRQTLTIGLDLGDRNSWYCMLDEAGRIQLENLGTDGT
Ga0335069_1000250931	3300032893	Soil	MKKVSTVATRQSRNISQQKLTIGLDLGDRNSCYCV
Ga0335072_102732971	3300032898	Soil	MKKVSTAATMESRNFSRQQKLTIGLDLGDGNSWYC
Ga0335077_110322152	3300033158	Soil	MKKVSTVAMMQSRNFSTQEKLTIGLDLGDRHSWYCVVD
Ga0335077_117865561	3300033158	Soil	MKEVSTAAGKQSRNFSQQKLTIGLDLGDRNSWYCVL
Ga0310810_100660415	3300033412	Soil	MKKVSTVATKRSRNFSQPTLTIGLDLGDRNSWYCVLGEA
Ga0334844_014089_2_118	3300033743	Soil	MKKVSTRAAAQSRNISQQKLTIGLDLGDRNSWYCVVDEA