Metagenome Family F050962

Basic Information
Family ID	F050962
Family Type	Metagenome
Number of Sequences	144
Average Sequence Length	43 residues
Representative Sequence	ASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLAT
Number of Associated Samples	126
Number of Associated Scaffolds	144

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.61 %
% of genes from short scaffolds (< 2000 bps)	93.75 %
Associated GOLD sequencing projects	124
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Most Common Taxonomy
Group	Bacteria (84.028 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.500 % of family members)
Environment Ontology (ENVO)	Unclassified (23.611 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.222 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.70% β-sheet: 0.00% Coil/Unstructured: 49.30%
Feature Viewer

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SCOP family	SCOP domain	Representative PDB	TM-score
a.7.12.1: PhoU-like	d1vcta1	1vct	0.83284
a.24.19.0: automated matches	d5mawe_	5maw	0.81906
a.24.19.0: automated matches	d3iqca_	3iqc	0.80843
a.4.5.61: PadR-like	d1yg2a_	1yg2	0.80678
a.7.12.1: PhoU-like	d1sumb_	1sum	0.80614

Pfam ID	Name	% Frequency in 144 Family Scaffolds
PF03795	YCII	69.44
PF00496	SBP_bac_5	6.25
PF01738	DLH	2.08
PF08031	BBE	1.39
PF00313	CSD	1.39
PF05988	DUF899	1.39
PF16694	Cytochrome_P460	1.39
PF02913	FAD-oxidase_C	0.69
PF06779	MFS_4	0.69
PF05626	DUF790	0.69
PF02310	B12-binding	0.69
PF14535	AMP-binding_C_2	0.69
PF01591	6PF2K	0.69
PF02780	Transketolase_C	0.69
PF13581	HATPase_c_2	0.69
PF07992	Pyr_redox_2	0.69
PF00118	Cpn60_TCP1	0.69
PF01243	Putative_PNPOx	0.69
PF01041	DegT_DnrJ_EryC1	0.69
PF08281	Sigma70_r4_2	0.69
PF01979	Amidohydro_1	0.69
PF00072	Response_reg	0.69
PF01925	TauE	0.69

COG ID	Name	Functional Category	% Frequency in 144 Family Scaffolds
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	69.44
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	2.08
COG4312	Predicted dithiol-disulfide oxidoreductase, DUF899 family	General function prediction only [R]	1.39
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.69
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.69
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.69
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.69
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.69
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.69
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.69
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.69

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.03 %
Unclassified	root	N/A	15.97 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.61 %
Unclassified	root	N/A	15.97 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	1.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.97 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4.17 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.47 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.47 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.47 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	1.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	15.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.47 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1.39 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002908\|JGI25382J43887_10465292	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300004156\|Ga0062589_101441876	Not Available	674	Open in IMG/M
3300004267\|Ga0066396_10115858	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300004463\|Ga0063356_103602587	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300004463\|Ga0063356_104445179	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005171\|Ga0066677_10411759	All Organisms → cellular organisms → Bacteria → Proteobacteria	772	Open in IMG/M
3300005171\|Ga0066677_10445201	All Organisms → cellular organisms → Bacteria → Proteobacteria	741	Open in IMG/M
3300005171\|Ga0066677_10737800	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300005174\|Ga0066680_10670415	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300005180\|Ga0066685_10685537	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300005295\|Ga0065707_10497754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	749	Open in IMG/M
3300005332\|Ga0066388_100757840	All Organisms → cellular organisms → Bacteria → Proteobacteria	1569	Open in IMG/M
3300005332\|Ga0066388_103080287	Not Available	852	Open in IMG/M
3300005347\|Ga0070668_101300793	All Organisms → cellular organisms → Bacteria	661	Open in IMG/M
3300005439\|Ga0070711_100244706	Not Available	1404	Open in IMG/M
3300005451\|Ga0066681_10365800	All Organisms → cellular organisms → Bacteria → Proteobacteria	886	Open in IMG/M
3300005471\|Ga0070698_102042928	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005554\|Ga0066661_10813577	Not Available	546	Open in IMG/M
3300005557\|Ga0066704_10630859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	684	Open in IMG/M
3300005558\|Ga0066698_10633782	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300005574\|Ga0066694_10522021	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005616\|Ga0068852_100464466	All Organisms → cellular organisms → Bacteria	1255	Open in IMG/M
3300005713\|Ga0066905_100095928	All Organisms → cellular organisms → Bacteria	1999	Open in IMG/M
3300005713\|Ga0066905_102073054	Not Available	529	Open in IMG/M
3300005718\|Ga0068866_11247788	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005764\|Ga0066903_103423411	All Organisms → cellular organisms → Bacteria → Proteobacteria	856	Open in IMG/M
3300005764\|Ga0066903_103693178	All Organisms → cellular organisms → Bacteria → Proteobacteria	823	Open in IMG/M
3300005843\|Ga0068860_100427278	All Organisms → cellular organisms → Bacteria	1314	Open in IMG/M
3300005844\|Ga0068862_102791818	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300005937\|Ga0081455_10410473	All Organisms → cellular organisms → Bacteria	937	Open in IMG/M
3300006852\|Ga0075433_10307389	All Organisms → cellular organisms → Bacteria	1404	Open in IMG/M
3300006876\|Ga0079217_11449712	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300006914\|Ga0075436_101336484	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300006969\|Ga0075419_10107991	All Organisms → cellular organisms → Bacteria	1794	Open in IMG/M
3300009090\|Ga0099827_11461976	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300009094\|Ga0111539_13240922	Not Available	524	Open in IMG/M
3300009137\|Ga0066709_101091711	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300009147\|Ga0114129_13119314	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300009553\|Ga0105249_10379182	All Organisms → cellular organisms → Bacteria	1440	Open in IMG/M
3300010043\|Ga0126380_11459596	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300010047\|Ga0126382_11257834	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300010048\|Ga0126373_11093949	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300010303\|Ga0134082_10479216	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010323\|Ga0134086_10240862	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300010333\|Ga0134080_10606205	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300010335\|Ga0134063_10356983	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300010336\|Ga0134071_10039353	All Organisms → cellular organisms → Bacteria	2103	Open in IMG/M
3300010358\|Ga0126370_11735430	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300010360\|Ga0126372_10059143	All Organisms → cellular organisms → Bacteria	2653	Open in IMG/M
3300010361\|Ga0126378_11243718	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300010366\|Ga0126379_10286760	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300010366\|Ga0126379_12877200	Not Available	576	Open in IMG/M
3300010398\|Ga0126383_10166243	All Organisms → cellular organisms → Bacteria → Proteobacteria	2078	Open in IMG/M
3300010398\|Ga0126383_13228732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	532	Open in IMG/M
3300012189\|Ga0137388_11097189	All Organisms → cellular organisms → Bacteria → Proteobacteria	732	Open in IMG/M
3300012199\|Ga0137383_10180915	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300012202\|Ga0137363_10397477	All Organisms → cellular organisms → Bacteria	1148	Open in IMG/M
3300012202\|Ga0137363_11208698	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300012203\|Ga0137399_11260663	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300012511\|Ga0157332_1055776	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300012582\|Ga0137358_10859083	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300012685\|Ga0137397_10178192	All Organisms → cellular organisms → Bacteria → Proteobacteria	1578	Open in IMG/M
3300012685\|Ga0137397_10801142	Not Available	699	Open in IMG/M
3300012906\|Ga0157295_10089427	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300012918\|Ga0137396_11073007	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300012922\|Ga0137394_10745738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	823	Open in IMG/M
3300012923\|Ga0137359_11234344	Not Available	635	Open in IMG/M
3300012929\|Ga0137404_10574250	All Organisms → cellular organisms → Bacteria → Proteobacteria	1012	Open in IMG/M
3300012929\|Ga0137404_10881328	All Organisms → cellular organisms → Bacteria → Proteobacteria	815	Open in IMG/M
3300012930\|Ga0137407_10060906	All Organisms → cellular organisms → Bacteria	3105	Open in IMG/M
3300012944\|Ga0137410_10139170	All Organisms → cellular organisms → Bacteria → Proteobacteria	1839	Open in IMG/M
3300012948\|Ga0126375_11744449	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300014154\|Ga0134075_10104963	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300015077\|Ga0173483_10457728	Not Available	670	Open in IMG/M
3300015264\|Ga0137403_10457793	All Organisms → cellular organisms → Bacteria → Proteobacteria	1150	Open in IMG/M
3300015356\|Ga0134073_10059028	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300015357\|Ga0134072_10319025	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300015359\|Ga0134085_10355604	All Organisms → cellular organisms → Bacteria → Proteobacteria	652	Open in IMG/M
3300015372\|Ga0132256_103675774	Not Available	516	Open in IMG/M
3300015372\|Ga0132256_103709199	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300015374\|Ga0132255_100866723	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300015374\|Ga0132255_103339427	Not Available	684	Open in IMG/M
3300016404\|Ga0182037_11538500	Not Available	591	Open in IMG/M
3300017656\|Ga0134112_10353405	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300017939\|Ga0187775_10007993	All Organisms → cellular organisms → Bacteria	2626	Open in IMG/M
3300017994\|Ga0187822_10124389	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300018431\|Ga0066655_10103544	All Organisms → cellular organisms → Bacteria	1600	Open in IMG/M
3300018431\|Ga0066655_10349985	All Organisms → cellular organisms → Bacteria → Proteobacteria	969	Open in IMG/M
3300018482\|Ga0066669_11883887	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300019458\|Ga0187892_10468403	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300019890\|Ga0193728_1172520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	932	Open in IMG/M
3300020012\|Ga0193732_1087145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	502	Open in IMG/M
3300025917\|Ga0207660_10337385	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300025931\|Ga0207644_10098928	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2188	Open in IMG/M
3300026023\|Ga0207677_10581125	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300026095\|Ga0207676_11610399	Not Available	647	Open in IMG/M
3300026142\|Ga0207698_10192324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1819	Open in IMG/M
3300026297\|Ga0209237_1057672	All Organisms → cellular organisms → Bacteria → Proteobacteria	1905	Open in IMG/M
3300026301\|Ga0209238_1115091	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300026310\|Ga0209239_1170810	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300026312\|Ga0209153_1311200	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300026326\|Ga0209801_1235671	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300026326\|Ga0209801_1266514	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300026330\|Ga0209473_1141970	All Organisms → cellular organisms → Bacteria	981	Open in IMG/M
3300026334\|Ga0209377_1079326	All Organisms → cellular organisms → Bacteria → Proteobacteria	1397	Open in IMG/M
3300026361\|Ga0257176_1004949	All Organisms → cellular organisms → Bacteria	1524	Open in IMG/M
3300026481\|Ga0257155_1011474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1193	Open in IMG/M
3300026528\|Ga0209378_1116170	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300026547\|Ga0209156_10332252	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300027068\|Ga0209898_1057458	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300027846\|Ga0209180_10252483	Not Available	1015	Open in IMG/M
3300027873\|Ga0209814_10100510	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300027874\|Ga0209465_10312008	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300027876\|Ga0209974_10027511	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300028596\|Ga0247821_10605698	Not Available	707	Open in IMG/M
3300028608\|Ga0247819_10687185	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300028792\|Ga0307504_10079577	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300028792\|Ga0307504_10409220	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300028807\|Ga0307305_10293801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	740	Open in IMG/M
3300031543\|Ga0318516_10782142	Not Available	539	Open in IMG/M
3300031547\|Ga0310887_11030715	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031562\|Ga0310886_10212812	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1061	Open in IMG/M
3300031740\|Ga0307468_101818513	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300031754\|Ga0307475_10982378	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031768\|Ga0318509_10073972	All Organisms → cellular organisms → Bacteria	1793	Open in IMG/M
3300031770\|Ga0318521_10157733	All Organisms → cellular organisms → Bacteria → Proteobacteria	1292	Open in IMG/M
3300031777\|Ga0318543_10509419	Not Available	539	Open in IMG/M
3300031779\|Ga0318566_10049596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1991	Open in IMG/M
3300031782\|Ga0318552_10056306	All Organisms → cellular organisms → Bacteria	1873	Open in IMG/M
3300031794\|Ga0318503_10317426	Not Available	506	Open in IMG/M
3300031798\|Ga0318523_10146051	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300031820\|Ga0307473_10129443	All Organisms → cellular organisms → Bacteria	1400	Open in IMG/M
3300031835\|Ga0318517_10022929	All Organisms → cellular organisms → Bacteria → Proteobacteria	2429	Open in IMG/M
3300031897\|Ga0318520_10948581	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300031908\|Ga0310900_10634401	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	848	Open in IMG/M
3300031959\|Ga0318530_10211437	All Organisms → cellular organisms → Bacteria → Proteobacteria	797	Open in IMG/M
3300031981\|Ga0318531_10486187	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300032013\|Ga0310906_10990971	Not Available	603	Open in IMG/M
3300032060\|Ga0318505_10342377	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300032180\|Ga0307471_101174926	All Organisms → cellular organisms → Bacteria → Proteobacteria	932	Open in IMG/M
3300032180\|Ga0307471_103520972	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300033550\|Ga0247829_11019250	Not Available	688	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.64%
Host-Associated	Host-Associated	17.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.94%
Plants	Host-Associated → Plants	17.36%
Aquatic	Environmental → Aquatic	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.25%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.33%
Freshwater	Environmental → Aquatic → Freshwater	0.69%
Cave	Environmental → Terrestrial → Cave	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.14%
Loam	Environmental → Terrestrial → Soil → Loam	9.72%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.64%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.69%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.69%
Sand	Environmental → Terrestrial → Soil → Sand	0.69%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.58%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.56%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.08%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.39%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.69%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.69%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.72%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.64%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	6.94%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	6.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.47%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.08%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.39%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.39%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.39%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.39%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.39%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.69%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.69%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.69%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.69%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.69%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.69%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004267	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBio	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012511	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012906	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S212-509R-1	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026481	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-A	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25382J43887_104652922	3300002908	Grasslands Soil	TAIESALESVEALATELGADPYRRMAELERARLAETVTS*
Ga0062589_1014418761	3300004156	Soil	RLRLLAAEPGSRRATIESALEALETLSAELGSEPYRRIAALERARLAP*
Ga0066396_101158582	3300004267	Tropical Forest Soil	LLAAELPVDRAALARALESLDGLTAELGSDAYRRIAALER*
Ga0063356_1036025871	3300004463	Arabidopsis Thaliana Rhizosphere	EPAPNRIATESALASVDALTAELDSDPYRRIAALVRGRLTT*
Ga0063356_1044451791	3300004463	Arabidopsis Thaliana Rhizosphere	LLASEPAFDRTEGEHALESLDAVTAELGSDPYRRIAALERARLAR*
Ga0066677_104117593	3300005171	Soil	LLASEPASERAAIDSALGSLDAVTAELGSDPYRRIAALERARLAT*
Ga0066677_104452011	3300005171	Soil	EPASDRTAIESALESVDAITAELGSDPYRRIAALERARLA*
Ga0066677_107378001	3300005171	Soil	EPASDRTAIESALESVDAITAELGSDPYRRIAALERARLAT*
Ga0066680_106704151	3300005174	Soil	ASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLAT*
Ga0066685_106855371	3300005180	Soil	EPASDRTAIESALESLDALAAELGSVPYRRLAALERARLAT*
Ga0065707_104977543	3300005295	Switchgrass Rhizosphere	LASEPGSDRTAIDSALGSLDALTAELGSDPYRRIAALERARLAT*
Ga0066388_1007578401	3300005332	Tropical Forest Soil	ASAHLVAAEPTSDRAAIESALGSLDAVTAELGSDPYRRIAALERARLIT*
Ga0066388_1030802872	3300005332	Tropical Forest Soil	TLAWVRLLASEPASDRAAIESALESLDRVTAELGSDPYQRIAALERARPAT*
Ga0070668_1013007932	3300005347	Switchgrass Rhizosphere	ASDRTAIESALESLDALTAELGSDPYRRIAALERARLAP*
Ga0070711_1002447061	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VPDRTAIESALDSVEALAAKLGADPYRRMAELERARLAQ*
Ga0066681_103658001	3300005451	Soil	PAFDRTAIASALESVDALTAELGSDPYRRIAALERARLA*
Ga0070698_1020429281	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	SEPASDRTAIESALESLDALTAELGSDPYRRIAGLERARFATQPGTRS*
Ga0066661_108135771	3300005554	Soil	VRLLTAEPAADRAAIESALESLDALTAELGSVLYGRIAALERARLAT*
Ga0066704_106308591	3300005557	Soil	RTAIESALESLDALTAELGSDPYRRIAALERARLAT*
Ga0066698_106337822	3300005558	Soil	SDRRAIESALASVDALTAELGSDPYRRIAALERARLA*
Ga0066694_105220212	3300005574	Soil	TAIESALESLDALTAELGSDPYRRIAALERARLAT*
Ga0068852_1004644664	3300005616	Corn Rhizosphere	SRRATIESALEALETLSAELGSEPYRRIAALERARLAP*
Ga0066905_1000959281	3300005713	Tropical Forest Soil	PDRDALEGALSSLEALAAELDADPYRRMAALERARLAQAPSVARP*
Ga0066905_1020730542	3300005713	Tropical Forest Soil	SEPGSDRAVVEGALGDLDALAAELGSEPYRHVAARERARLTP*
Ga0068866_112477883	3300005718	Miscanthus Rhizosphere	SDRTAIESALESLDALTAELGSGPYRRIAALERARLAP*
Ga0066903_1034234113	3300005764	Tropical Forest Soil	LVASEKAADRTAMESALESLDALSTELGSDPYRRIAASERARLAP*
Ga0066903_1036931783	3300005764	Tropical Forest Soil	RLLASEPASDRAAVEGALGSLDALTAELGSDPYRRIATLERARLAT*
Ga0068860_1004272782	3300005843	Switchgrass Rhizosphere	HLLTSEPMADRNAIETALESLDAITAELDSAPYRRIAAFERARLHT*
Ga0068862_1027918181	3300005844	Switchgrass Rhizosphere	SDRTAIESALKSLDALTADLGSVPYRRIAALERLRLGA*
Ga0081455_104104731	3300005937	Tabebuia Heterophylla Rhizosphere	ASEPASDRSVIETALESLDALAAELGSDPYRRLAALERARLGTSP*
Ga0075433_103073894	3300006852	Populus Rhizosphere	RTAIESALESLDALTAELGSVPYRRIAALERARLAA*
Ga0075425_1028525351	3300006854	Populus Rhizosphere	IESALESVEALATELGAAPYRRMAELERARLAETSANPR*
Ga0079217_114497121	3300006876	Agricultural Soil	TAIESALESVDALTAELGSDPYRRLAALERARLAT*
Ga0075436_1013364841	3300006914	Populus Rhizosphere	ASDRTAIESALESVDALTAELGSAPYRRLAAAERARLAS*
Ga0075419_101079913	3300006969	Populus Rhizosphere	AIAAALTSLDALAAELGSDPYRRIAALERARLAP*
Ga0099827_114619761	3300009090	Vadose Zone Soil	LLASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLTT*
Ga0111539_132409222	3300009094	Populus Rhizosphere	ASEPASGRTATQRALEAMDAITAELGSDPYRRIAALERARLAAP*
Ga0066709_1010917111	3300009137	Grasslands Soil	RTAIESALESVEALATELGADPYRRMAELERARLAETVTS*
Ga0114129_131193142	3300009147	Populus Rhizosphere	GIRLLASEPAADRTAISRALESLDALAAELGSDPYRRTAALERARLVR*
Ga0105249_103791823	3300009553	Switchgrass Rhizosphere	LASEPASDRTAIESALDSLDALTAELGSDPYRRIAALERARLAT*
Ga0126380_114595962	3300010043	Tropical Forest Soil	ASEPASDRTAIERALDSLDALTAELGSDPYRRIAAFERTRIAT*
Ga0126382_112578342	3300010047	Tropical Forest Soil	LLASEPASDRAAIESALESLETVTAELGSEPYRRIAALERTRIAP*
Ga0126373_110939492	3300010048	Tropical Forest Soil	LASEPAPDRALIGSALDSVDALTAELGSDPYRRMAALERARLAT*
Ga0134082_104792161	3300010303	Grasslands Soil	DRTAIESALESVDALTAELGSAPYRRIAALERARLA*
Ga0134086_102408623	3300010323	Grasslands Soil	ASEPASDRNAIESALESLDALTAELGSDPYRRIAALERARLADFRA*
Ga0134080_106062052	3300010333	Grasslands Soil	DRTAIESALESVDALTAELGSDPYRRIAAFERARLATSPFNLP*
Ga0134063_103569831	3300010335	Grasslands Soil	TAIESALESLDALTAELGSDPYRRIAALERARLADFRA*
Ga0134071_100393534	3300010336	Grasslands Soil	LASEPASDGTAIESALESLDALTAELGSDPYRRIAAREHARLGT*
Ga0126370_117354301	3300010358	Tropical Forest Soil	DVARASVRLLAAELPVDRTALARALESLDGLTAELGSDAYRRIAALER*
Ga0126372_100591431	3300010360	Tropical Forest Soil	DPGAIESALRSLDALTAELGSDAYRRIATLERTRLAT*
Ga0126378_112437182	3300010361	Tropical Forest Soil	LLAAELPVDRTALAQALESLDGLTAELGSVAYRRIAALEH*
Ga0126379_102867603	3300010366	Tropical Forest Soil	ASDRTAIESALASLDVLTAELSSVPYRRIAALERARLAT*
Ga0126379_128772002	3300010366	Tropical Forest Soil	VHLLTSEAVSDRTAIATALESLDAVTAELDSVPYRCIAALERARLHT*
Ga0126383_101662431	3300010398	Tropical Forest Soil	AEPASDRTAIESALESLDVLTAELGSVPYRRIAALERARLAT*
Ga0126383_132287321	3300010398	Tropical Forest Soil	LLASETAPDRAAVESALESLDALVAEMDTDHYRRLAELERARLAKTFSTRR*
Ga0137388_110971893	3300012189	Vadose Zone Soil	DRTAIETALESVDALTAELGSDPYRRIAAVERARLAT*
Ga0137383_101809151	3300012199	Vadose Zone Soil	DRTAIESALESLDALTAELGSDPYRRIAALQRARLAT*
Ga0137363_103974771	3300012202	Vadose Zone Soil	RASDHIAIESALESLDALTAELGSDPYRRIVALERARLAT*
Ga0137363_112086983	3300012202	Vadose Zone Soil	AWVRLLASEPASDRTAIESALESVDALTAELGSDPYRRIAALERARLAT*
Ga0137399_112606631	3300012203	Vadose Zone Soil	HTAIESALESLDALTAELGSVPYRRIAALERARLAT*
Ga0157332_10557762	3300012511	Soil	WVRLLASEPASDRAAIESALDSLDALTAELGSDPYRRIAALERARLAT*
Ga0137358_108590832	3300012582	Vadose Zone Soil	ASEPVPDRTAIESALESVEALATELGADPYRRSAARERARLAT*
Ga0137397_101781921	3300012685	Vadose Zone Soil	SDRTAIESALESLDALTAELGSDPYRRIAALERARLAT*
Ga0137397_108011422	3300012685	Vadose Zone Soil	SEPASDRTAIESALESLDALTAELGSDPYRRIAAAERARVGT*
Ga0157295_100894273	3300012906	Soil	LAGVHLLEESAADRAEIERALASLDALAAELGSAPYRAIAARERARLVT*
Ga0137396_110730072	3300012918	Vadose Zone Soil	LAWVRLLAAEPASDRAAIQSALESLDALTAELGSVPYRRIAALERARLAT*
Ga0137394_107457383	3300012922	Vadose Zone Soil	GSDRTAIESALKSLDALTADLGSVPYRRIAALERARLGT*
Ga0137359_112343441	3300012923	Vadose Zone Soil	DRTAIESAFESLDALTAELGSDPYRRIAALERARLGR*
Ga0137404_105742501	3300012929	Vadose Zone Soil	LASEPASDRTAVESALESLDALTAELGSDPYRRMAALERARLAGPL*
Ga0137404_108813281	3300012929	Vadose Zone Soil	LLASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLAT*
Ga0137407_100609061	3300012930	Vadose Zone Soil	PDRTAIESALESVEALATELGADPYRRSAARERARLAT*
Ga0137410_101391703	3300012944	Vadose Zone Soil	VRLLASEPASDRLAIESALESMDALAAELGSVPYRRIAALTRARLAT*
Ga0126375_117444492	3300012948	Tropical Forest Soil	VRLLASEPASDRAAVEGALGSLDALTAELGSDPYRRIATLERARLAT*
Ga0134075_101049631	3300014154	Grasslands Soil	AIESALESLDALTAELGSDPYRRIAALQRARLAT*
Ga0173483_104577282	3300015077	Soil	DVALAGVRLLGEAAADTAEIERALEALDALAAELGSAPYRAIAARERARLVT*
Ga0137403_104577931	3300015264	Vadose Zone Soil	LAWVRLLASEPSSDRTAVESALQSLDALTAELGSDPFRRIAALERARLAP*
Ga0134073_100590284	3300015356	Grasslands Soil	VRLLASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLANFRA*
Ga0134072_103190251	3300015357	Grasslands Soil	SDRTAIESALESLDALTAELGSDPYRRIAALERARLADFRA*
Ga0134085_103556041	3300015359	Grasslands Soil	RLLASAPASDRAAIESALGSLDAVTAELGSDPYRRIAALERARLAT*
Ga0132256_1036757742	3300015372	Arabidopsis Rhizosphere	AWARFLASEPAPDRTEITAALDSLDGVAAELGSDPYRRIAALERSRIAA*
Ga0132256_1037091992	3300015372	Arabidopsis Rhizosphere	SEPVPERAEVERALESVDAVVAELGSDPYRRLAALERARLGI*
Ga0132255_1008667235	3300015374	Arabidopsis Rhizosphere	ATIESALEALETLSAELGSEPYRRIAALERARLAP*
Ga0132255_1033394272	3300015374	Arabidopsis Rhizosphere	WARFLASEPAPDRTEITAALDSLDGVAAELGSDPYRRIAALERSRIAA*
Ga0182037_115385001	3300016404	Soil	ALAWVRLLTSEPASDRTAIERALASLDAVTAELGSEPYRRMAALERARVVQ
Ga0134112_103534053	3300017656	Grasslands Soil	ASEPASDRTAIESALESLDALTAELGSDPYRRIAALQRARLAT
Ga0187775_100079934	3300017939	Tropical Peatland	DVALAWVHLLASESTTDRTTIETALEALDALAAELGSDPYRRIAVLERARLGI
Ga0187822_101243891	3300017994	Freshwater Sediment	PAPDRPAIESALASLDALTAGLGSDPYRRLVALERARLAP
Ga0066655_101035445	3300018431	Grasslands Soil	VRLLASEPASDRTAIERALESLDALAAELGSDPYRRIAAFERVRLAT
Ga0066655_103499851	3300018431	Grasslands Soil	SDRRAIESALESVDALTAELGSDPYRRIAALERARLA
Ga0066655_112616491	3300018431	Grasslands Soil	RPAIESALEFVEALVTQLGAAPYRRMAELERARLAETSANPR
Ga0066669_118838871	3300018482	Grasslands Soil	TAIESALESLDALTAELGSDPYRRIAALERARLAT
Ga0187892_104684032	3300019458	Bio-Ooze	AAELAAGDLTAATSGLESLDALTAEVGSDPCRRIAALERARLAVAAIDFGPR
Ga0193728_11725202	3300019890	Soil	RPAIEGALESVDALATEFGADPYRRMAELERARLAQ
Ga0193732_10871452	3300020012	Soil	EPVPDRGAIEAALESVDALATEFGADPYRRMAEIERGRLLQ
Ga0207660_103373853	3300025917	Corn Rhizosphere	ASEPASDRTAIESALKSLDALTADLGSVPYRRIAALERLRLGA
Ga0207644_100989281	3300025931	Switchgrass Rhizosphere	ARARLRLLAAEPGSRRATIESALEALETLSAELGSEPYRRIAALERARLAP
Ga0207677_105811253	3300026023	Miscanthus Rhizosphere	RARLRLLAAEPGSRRATIESALEALETLSAELGSEPYRRIAALERARLAP
Ga0207676_116103991	3300026095	Switchgrass Rhizosphere	ARAHLLAAEPAADRMALEAALESLDVLTVELGSEPYRRLAAIERARLAT
Ga0207698_101923241	3300026142	Corn Rhizosphere	AEPGSRRATIESALEALETLSAELGSEPYRRIAALERARLAP
Ga0209237_10576724	3300026297	Grasslands Soil	VRLLASEPSSDRRAIDSALASVDALTAELGSDPYRRIAALERARLA
Ga0209238_11150912	3300026301	Grasslands Soil	EPAADRTAIESALESLDALAAELGSVPYRRLAALERARLAT
Ga0209239_11708102	3300026310	Grasslands Soil	SEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLADFRA
Ga0209153_13112002	3300026312	Soil	EPAFDRTAIASALESVDALTAELGSDPYRRIAALERARLA
Ga0209801_12356713	3300026326	Soil	ASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLADFRA
Ga0209801_12665143	3300026326	Soil	ASEPASDRTAIESALESLDALTAELGSDPYRRIAALERARLAT
Ga0209473_11419704	3300026330	Soil	ASEPASDRTAIESALESVDAITAELGSDPYRRIAALERARLAT
Ga0209377_10793261	3300026334	Soil	RLLASEPSSDRRAIESALASVDALTAELGSDPYRRIAALERARLA
Ga0257176_10049493	3300026361	Soil	SDRTAIESALESLDALTAELGSDPYRRIAGLERARFATQPGTRS
Ga0257155_10114741	3300026481	Soil	VPDRTAIESALESVDTLATEFGADPYRRMAELERARLAQ
Ga0209378_11161702	3300026528	Soil	ASEPASDRNAIESALESLDALTAELGSDPYRRIAALERARLAT
Ga0209156_103322523	3300026547	Soil	RTAIESGLESLDALTAELGSDPYRRIAALERARLAT
Ga0209898_10574581	3300027068	Groundwater Sand	LLASEPASDRTAIVRALESLDALTAELGSVPYRRIAALEHARLGT
Ga0209180_102524832	3300027846	Vadose Zone Soil	SDRTAIEGALEALDALTAELGSDPYRRIGALERARLAT
Ga0209814_101005101	3300027873	Populus Rhizosphere	VHLVAAEPASDRAAIESALDSLDAVTAELGSDPYRRIAALERERLAT
Ga0209465_103120081	3300027874	Tropical Forest Soil	EPASDRAVIDSALDSLDALTVELGSVPYRRMAALERARLAI
Ga0209974_100275114	3300027876	Arabidopsis Thaliana Rhizosphere	ALAGVHLLEESAADRAEIERALASLDALAAELGSAPYRAIAARERARLVT
Ga0247821_106056981	3300028596	Soil	SEPASDRTAINSALGSLDALTAELGSDPYRRIAALERARLAT
Ga0247819_106871851	3300028608	Soil	EPAPNRIATESALASVDALTAELDSYPYRRIAALVRGRLTT
Ga0307504_100795771	3300028792	Soil	AIDGALESLDALTAELGSDPYRRLGALERARLAPGPPF
Ga0307504_104092203	3300028792	Soil	IESALESLDAVATELGSDPYRRIAALERARLAHSGRAMK
Ga0307305_102938011	3300028807	Soil	VPDRTAIEGALESVDALATEFGADPYRRMAELERARLAR
Ga0318516_107821422	3300031543	Soil	VRLLALEPAPDRTGIESALESLDALRAELDADPYQRIAALERARLAT
Ga0310887_110307151	3300031547	Soil	RFLASEPAPDRPAIERALESLDGLTAELGSAPYRRIAELERARLDT
Ga0310886_102128121	3300031562	Soil	ASDRTAINSALGSLDALTAELGSDPYRRIAALERARLAT
Ga0307468_1018185132	3300031740	Hardwood Forest Soil	ASEPASDRAAIAGALDSLDADTAELGSDPYQRIAALERSRLR
Ga0307475_109823782	3300031754	Hardwood Forest Soil	LLASEPSSDRAAIESALESLDALTAELGSDPCRRIAALERARLAT
Ga0318509_100739723	3300031768	Soil	LPVDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0318521_101577333	3300031770	Soil	SEPASDRTAIERALASLDAVTAELGSEPYRRMAALERARVVQ
Ga0318543_105094191	3300031777	Soil	AWVRLLASEPASDRTAIERALESLDAVTAELGSEPYRRMAALERARVVQ
Ga0318566_100495963	3300031779	Soil	AWVRLLAAELPVDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0318552_100563063	3300031782	Soil	LAAERPVDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0318503_103174262	3300031794	Soil	RTAIERALASLDAVTAELGSEPYRRMAALERARVVQ
Ga0318523_101460511	3300031798	Soil	ERLDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0307473_101294431	3300031820	Hardwood Forest Soil	AIESALESLDALTAELGSDPYRRIAALERARFATQPGTRS
Ga0318517_100229294	3300031835	Soil	AELPVDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0318520_109485811	3300031897	Soil	AWVRLLASEPASDRTGIERALESLDAVTAELGSEPYRRMAALERARVVQ
Ga0310900_106344011	3300031908	Soil	PASDRTAINSALGSLDALTAELGSDPYRRIAALERARLAT
Ga0318530_102114373	3300031959	Soil	ASDRTAIERALASLDAVTAELGSEPYRRMAALERARVVQ
Ga0318531_104861872	3300031981	Soil	DRTGIESALESLDALRAELDADPYQRIAALERARLAT
Ga0310906_109909711	3300032013	Soil	RTAIDSALGSLDALTAELGSDPYRRIAALERARLAT
Ga0318505_103423771	3300032060	Soil	LAAELPVDRAALARALESLDGLTAELGSDAYRRIAALER
Ga0307471_1011749261	3300032180	Hardwood Forest Soil	SDRAVIESALVSLDGLTAELGSVPYRRIAALERARLGL
Ga0307471_1035209722	3300032180	Hardwood Forest Soil	RAAIESALESMDALTAELDSDPYRRVAALERARFAT
Ga0247829_110192502	3300033550	Soil	RLRLLAAEPGSRRATIESALEALETLSAELGSEPYRRIAALERARLAP

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F050962

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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