Metagenome / Metatranscriptome Family F050448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050448
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	67 residues
Representative Sequence	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Number of Associated Samples	123
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.59 %
% of genes near scaffold ends (potentially truncated)	28.97 %
% of genes from short scaffolds (< 2000 bps)	88.97 %
Associated GOLD sequencing projects	119
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (76.552 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (29.655 % of family members)
Environment Ontology (ENVO)	Unclassified (31.724 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.22% β-sheet: 0.00% Coil/Unstructured: 39.78%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF00903	Glyoxalase	9.66
PF07883	Cupin_2	8.97
PF03061	4HBT	8.97
PF14534	DUF4440	4.83
PF01872	RibD_C	2.76
PF03551	PadR	2.07
PF12680	SnoaL_2	2.07
PF00857	Isochorismatase	2.07
PF00583	Acetyltransf_1	1.38
PF01808	AICARFT_IMPCHas	0.69
PF07366	SnoaL	0.69
PF07876	Dabb	0.69
PF03631	Virul_fac_BrkB	0.69
PF11964	SpoIIAA-like	0.69
PF07077	DUF1345	0.69
PF07676	PD40	0.69
PF12681	Glyoxalase_2	0.69
PF08529	NusA_N	0.69
PF13417	GST_N_3	0.69
PF13669	Glyoxalase_4	0.69
PF00743	FMO-like	0.69
PF12713	DUF3806	0.69
PF08022	FAD_binding_8	0.69
PF00248	Aldo_ket_red	0.69
PF12848	ABC_tran_Xtn	0.69
PF02371	Transposase_20	0.69
PF13302	Acetyltransf_3	0.69
PF05899	Cupin_3	0.69
PF01708	Gemini_mov	0.69
PF00155	Aminotran_1_2	0.69
PF00275	EPSP_synthase	0.69
PF13474	SnoaL_3	0.69
PF06224	HTH_42	0.69
PF01063	Aminotran_4	0.69
PF00106	adh_short	0.69
PF10706	Aminoglyc_resit	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	2.76
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	2.76
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	2.07
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.07
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.07
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.07
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.07
COG0115	Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase	Amino acid transport and metabolism [E]	1.38
COG0138	AICAR transformylase/IMP cyclohydrolase PurH	Nucleotide transport and metabolism [F]	0.69
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.69
COG2072	Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD	Inorganic ion transport and metabolism [P]	0.69
COG3214	DNA glycosylase YcaQ, repair of DNA interstrand crosslinks	Replication, recombination and repair [L]	0.69
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.69
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	77.24 %
Unclassified	root	N/A	22.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	76.55 %
Unclassified	root	N/A	22.76 %
Viruses	superkingdom	All Organisms → Viruses	0.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	76.55 %
Unclassified	root	N/A	22.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	48.28 %
Unclassified	root	N/A	22.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.38 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.17 %
Unclassified	root	N/A	22.76 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	15.86 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.07 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.69 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	11.03 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	1.38 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.69 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.69 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.69 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.69 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.38 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.69 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	0.69 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.69 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.69 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.38 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	0.69 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.69 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.69 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.69 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.38 %
Ilumatobacter fluminis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter fluminis	0.69 %
unclassified Myxococcaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae	0.69 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.69 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.69 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	22.76 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	11.03 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1.38 %
Myxococcaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	0.69 %
Ilumatobacter fluminis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter fluminis	0.69 %
Solirubrobacterales bacterium 70-9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	0.69 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.69 %
Actinobacteria bacterium RBG_16_68_12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	0.69 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664021\|ICCgaii200_c0743972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	975	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0481695	Not Available	596	Open in IMG/M
3300000559\|F14TC_100376740	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium 70-9	1448	Open in IMG/M
3300000891\|JGI10214J12806_11478421	Not Available	650	Open in IMG/M
3300000956\|JGI10216J12902_107130337	Not Available	1161	Open in IMG/M
3300000956\|JGI10216J12902_109252195	All Organisms → Viruses → Predicted Viral	1204	Open in IMG/M
3300004114\|Ga0062593_100097130	All Organisms → cellular organisms → Bacteria	2061	Open in IMG/M
3300004114\|Ga0062593_100737565	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	968	Open in IMG/M
3300004156\|Ga0062589_100060862	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300004156\|Ga0062589_100640044	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300004157\|Ga0062590_101579450	All Organisms → cellular organisms → Bacteria → Terrabacteria group	662	Open in IMG/M
3300004643\|Ga0062591_100153815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1610	Open in IMG/M
3300005093\|Ga0062594_102142117	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005164\|Ga0066815_10053566	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	672	Open in IMG/M
3300005334\|Ga0068869_100580011	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300005339\|Ga0070660_100206836	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1593	Open in IMG/M
3300005354\|Ga0070675_100747362	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300005438\|Ga0070701_11081100	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005455\|Ga0070663_101182946	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300005471\|Ga0070698_100544883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1099	Open in IMG/M
3300005546\|Ga0070696_101906653	Not Available	515	Open in IMG/M
3300005548\|Ga0070665_101350771	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300005840\|Ga0068870_10117069	All Organisms → cellular organisms → Bacteria	1530	Open in IMG/M
3300006237\|Ga0097621_100600448	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300006572\|Ga0074051_11148781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	728	Open in IMG/M
3300006573\|Ga0074055_11866255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	954	Open in IMG/M
3300006575\|Ga0074053_11835317	All Organisms → cellular organisms → Bacteria → Terrabacteria group	711	Open in IMG/M
3300006576\|Ga0074047_11160150	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1049	Open in IMG/M
3300006576\|Ga0074047_11636787	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	534	Open in IMG/M
3300006577\|Ga0074050_11473260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	704	Open in IMG/M
3300006577\|Ga0074050_11943075	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	548	Open in IMG/M
3300006577\|Ga0074050_12098784	Not Available	1451	Open in IMG/M
3300006579\|Ga0074054_12178210	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1055	Open in IMG/M
3300006581\|Ga0074048_10038504	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	700	Open in IMG/M
3300006581\|Ga0074048_10055463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1361	Open in IMG/M
3300006605\|Ga0074057_11942853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	683	Open in IMG/M
3300009012\|Ga0066710_101446194	All Organisms → cellular organisms → Bacteria	1064	Open in IMG/M
3300009137\|Ga0066709_101165717	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300009176\|Ga0105242_11653033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	675	Open in IMG/M
3300010337\|Ga0134062_10126870	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → unclassified Myxococcaceae → Myxococcaceae bacterium	1117	Open in IMG/M
3300010400\|Ga0134122_12695520	Not Available	549	Open in IMG/M
3300010401\|Ga0134121_10624100	Not Available	1012	Open in IMG/M
3300010401\|Ga0134121_13180056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	507	Open in IMG/M
3300010403\|Ga0134123_11061213	Not Available	831	Open in IMG/M
3300010999\|Ga0138505_100018151	Not Available	881	Open in IMG/M
3300011000\|Ga0138513_100008427	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1242	Open in IMG/M
3300011003\|Ga0138514_100146515	Not Available	524	Open in IMG/M
3300011119\|Ga0105246_10469339	All Organisms → cellular organisms → Bacteria	1062	Open in IMG/M
3300011429\|Ga0137455_1223520	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300012198\|Ga0137364_10797930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_16_68_12	713	Open in IMG/M
3300012356\|Ga0137371_10205135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1543	Open in IMG/M
3300012899\|Ga0157299_10170740	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M
3300012939\|Ga0162650_100030374	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300012941\|Ga0162652_100040734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	730	Open in IMG/M
3300012943\|Ga0164241_10492261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter fluminis	882	Open in IMG/M
3300012951\|Ga0164300_10140482	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300012977\|Ga0134087_10192059	All Organisms → cellular organisms → Bacteria → Terrabacteria group	910	Open in IMG/M
3300012989\|Ga0164305_11440896	Not Available	608	Open in IMG/M
3300013100\|Ga0157373_10039976	All Organisms → cellular organisms → Bacteria	3356	Open in IMG/M
3300014745\|Ga0157377_10291597	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1073	Open in IMG/M
3300014838\|Ga0182030_11181712	Not Available	655	Open in IMG/M
3300015371\|Ga0132258_12284830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1357	Open in IMG/M
3300015372\|Ga0132256_100194268	All Organisms → cellular organisms → Bacteria	2072	Open in IMG/M
3300015372\|Ga0132256_100257628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1816	Open in IMG/M
3300015372\|Ga0132256_100741972	All Organisms → cellular organisms → Bacteria	1098	Open in IMG/M
3300015373\|Ga0132257_100134547	All Organisms → cellular organisms → Bacteria	2883	Open in IMG/M
3300015373\|Ga0132257_100562781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1405	Open in IMG/M
3300017792\|Ga0163161_11021444	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300017997\|Ga0184610_1111256	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	876	Open in IMG/M
3300018028\|Ga0184608_10000850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8565	Open in IMG/M
3300018028\|Ga0184608_10002043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6091	Open in IMG/M
3300018028\|Ga0184608_10378201	All Organisms → cellular organisms → Bacteria → Terrabacteria group	618	Open in IMG/M
3300018031\|Ga0184634_10566786	Not Available	501	Open in IMG/M
3300018051\|Ga0184620_10278442	All Organisms → cellular organisms → Bacteria → Terrabacteria group	563	Open in IMG/M
3300018052\|Ga0184638_1105344	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1033	Open in IMG/M
3300018054\|Ga0184621_10004908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3644	Open in IMG/M
3300018066\|Ga0184617_1150413	Not Available	681	Open in IMG/M
3300018071\|Ga0184618_10052222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1490	Open in IMG/M
3300018072\|Ga0184635_10138248	All Organisms → cellular organisms → Bacteria → Terrabacteria group	971	Open in IMG/M
3300018073\|Ga0184624_10391934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300018073\|Ga0184624_10507044	Not Available	524	Open in IMG/M
3300018075\|Ga0184632_10257047	Not Available	762	Open in IMG/M
3300018081\|Ga0184625_10061478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1895	Open in IMG/M
3300018081\|Ga0184625_10504706	Not Available	610	Open in IMG/M
3300018476\|Ga0190274_13403065	Not Available	536	Open in IMG/M
3300019356\|Ga0173481_10281609	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300019361\|Ga0173482_10605973	Not Available	551	Open in IMG/M
3300019767\|Ga0190267_10414145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	758	Open in IMG/M
3300019885\|Ga0193747_1030005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1349	Open in IMG/M
3300020005\|Ga0193697_1022637	Not Available	1562	Open in IMG/M
3300021082\|Ga0210380_10141114	All Organisms → cellular organisms → Bacteria	1078	Open in IMG/M
3300022756\|Ga0222622_11452456	Not Available	505	Open in IMG/M
3300025908\|Ga0207643_10111308	All Organisms → cellular organisms → Bacteria	1613	Open in IMG/M
3300025912\|Ga0207707_11135392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	635	Open in IMG/M
3300025926\|Ga0207659_10681084	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300025935\|Ga0207709_11788286	Not Available	511	Open in IMG/M
3300025942\|Ga0207689_10417840	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300026121\|Ga0207683_10245271	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300028381\|Ga0268264_11546427	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300028707\|Ga0307291_1208648	Not Available	505	Open in IMG/M
3300028708\|Ga0307295_10093243	All Organisms → cellular organisms → Bacteria → Terrabacteria group	807	Open in IMG/M
3300028710\|Ga0307322_10092509	All Organisms → cellular organisms → Bacteria → Terrabacteria group	772	Open in IMG/M
3300028711\|Ga0307293_10256058	All Organisms → cellular organisms → Bacteria → Terrabacteria group	556	Open in IMG/M
3300028715\|Ga0307313_10023867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1682	Open in IMG/M
3300028715\|Ga0307313_10126910	All Organisms → cellular organisms → Bacteria → Terrabacteria group	782	Open in IMG/M
3300028717\|Ga0307298_10268932	All Organisms → cellular organisms → Bacteria → Terrabacteria group	508	Open in IMG/M
3300028718\|Ga0307307_10032679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1483	Open in IMG/M
3300028744\|Ga0307318_10063715	All Organisms → cellular organisms → Bacteria	1227	Open in IMG/M
3300028755\|Ga0307316_10250231	Not Available	644	Open in IMG/M
3300028768\|Ga0307280_10031084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1595	Open in IMG/M
3300028771\|Ga0307320_10067934	Not Available	1329	Open in IMG/M
3300028771\|Ga0307320_10187986	All Organisms → cellular organisms → Bacteria → Terrabacteria group	806	Open in IMG/M
3300028784\|Ga0307282_10078662	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300028787\|Ga0307323_10005066	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4284	Open in IMG/M
3300028796\|Ga0307287_10034623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1816	Open in IMG/M
3300028796\|Ga0307287_10086646	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300028799\|Ga0307284_10051263	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300028802\|Ga0307503_10040080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1719	Open in IMG/M
3300028807\|Ga0307305_10000325	All Organisms → cellular organisms → Bacteria	16387	Open in IMG/M
3300028807\|Ga0307305_10128830	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1169	Open in IMG/M
3300028814\|Ga0307302_10100396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1382	Open in IMG/M
3300028819\|Ga0307296_10608694	Not Available	598	Open in IMG/M
3300028828\|Ga0307312_10960862	Not Available	566	Open in IMG/M
3300028861\|Ga0302259_1105497	Not Available	688	Open in IMG/M
3300028870\|Ga0302254_10065919	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1310	Open in IMG/M
3300028875\|Ga0307289_10015378	All Organisms → cellular organisms → Bacteria	2938	Open in IMG/M
3300028875\|Ga0307289_10114334	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300028876\|Ga0307286_10128720	All Organisms → cellular organisms → Bacteria → Terrabacteria group	900	Open in IMG/M
3300028876\|Ga0307286_10294353	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300029984\|Ga0311332_10063818	All Organisms → cellular organisms → Bacteria	2606	Open in IMG/M
3300030114\|Ga0311333_10094942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2213	Open in IMG/M
3300031096\|Ga0308193_1071575	All Organisms → cellular organisms → Bacteria → Terrabacteria group	555	Open in IMG/M
3300031226\|Ga0307497_10155724	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	953	Open in IMG/M
3300031421\|Ga0308194_10185184	All Organisms → cellular organisms → Bacteria → Terrabacteria group	665	Open in IMG/M
3300031720\|Ga0307469_10226186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1484	Open in IMG/M
3300031726\|Ga0302321_100262323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1834	Open in IMG/M
3300031858\|Ga0310892_10666543	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300031902\|Ga0302322_100038593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4683	Open in IMG/M
3300031918\|Ga0311367_11060548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	809	Open in IMG/M
3300031996\|Ga0308176_11753738	Not Available	662	Open in IMG/M
3300031996\|Ga0308176_12762814	Not Available	522	Open in IMG/M
3300032897\|Ga0335071_10400453	Not Available	1326	Open in IMG/M
3300034417\|Ga0364941_101393	All Organisms → cellular organisms → Bacteria → Terrabacteria group	694	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.45%
Host-Associated	Host-Associated	16.55%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.34%
Plants	Host-Associated → Plants	16.55%
Aquatic	Environmental → Aquatic	13.10%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.38%
Sediment	Environmental → Aquatic → Sediment	12.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	8.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.90%
Peat	Environmental → Terrestrial → Peat	4.83%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.45%
Freshwater	Environmental → Aquatic → Freshwater	0.69%
Floodplain	Environmental → Terrestrial → Floodplain	0.69%
Roots	Host-Associated → Plants → Roots	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.55%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.41%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.52%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.14%
Loam	Environmental → Terrestrial → Soil → Loam	3.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.07%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.38%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.69%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.69%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.69%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	44.14%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.14%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.76%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.07%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.07%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.69%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.69%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.69%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.69%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	29.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	11.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.83%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	4.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.76%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.07%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.07%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.07%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.07%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	2.07%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.38%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.38%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.38%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.38%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.69%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.69%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.69%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.69%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005164	Soil and rhizosphere microbial communities from Laval, Canada - mgLAC	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006576	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006579	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011429	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT600_2	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012943	Backyard soil microbial communities from Emeryville, California, USA - Original compost - Back yard soil (BY)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019885	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020012	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028861	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N3_4	Environmental	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300029984	I_Fen_E1 coassembly	Environmental	Open in IMG/M
3300030114	I_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031096	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_194 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031918	III_Fen_N3 coassembly	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300034417	Sediment microbial communities from East River floodplain, Colorado, United States - 17_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICCgaii200_07439722	2228664021	Soil	MPRHVRWHRIRVGLVVALAVILAGMVTDSLLSASWALDDGLLVAAAAVIGLALLLTRGRGRPEAR
ICChiseqgaiiDRAFT_04816951	3300000033	Soil	MPSHVYWHRVRVGLAVALILVFAGVAIDSLLSASWALDDGLLLAAAAVIALALLLTRGRGRAKADAP*
F14TC_1003767401	3300000559	Soil	MTPDEVIGGPPIYIWLMPRHVRWRGVRVGLAVALIIIFAGVVIDSLFSANWALDDGLLLAAGAVIALGLLVTRGRGRSEAR*
JGI10214J12806_114784212	3300000891	Soil	LSAAHGKRRKNGGYRWHRVRVGLAVALILIFAGVAIDSLLSASWALDDGLLLAAAAVIALALLLTRGRGRAKADAP*
JGI10216J12902_1071303371	3300000956	Soil	MRHVHWHRVRVGLVVALIVVFVGVVIDSLLSANWVLDDSLLLATAAIIAVALLLTRGRGRVKAQ*
JGI10216J12902_1092521952	3300000956	Soil	MPSHDRWYRIRVGLVVALVLIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLLARGRGRAETR*
Ga0062593_1000971303	3300004114	Soil	VYARTYTRLMPSHDRWHRIRVGLVVALVLIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLLARGRGRAETR*
Ga0062593_1007375652	3300004114	Soil	MARDVRWHRIRVALVVALVLIFAGVVIDSLLSASWVLDDGLLLAAAAVIALALLLTRGRGRPEAR*
Ga0062589_1000608622	3300004156	Soil	MARDVRWHRIRVALVVALVLIFAGVVIDSLLSASRVLDDGLLLAAAAVIALALLLTRGRGRPEAR*
Ga0062589_1006400442	3300004156	Soil	MPRHVRWHRIRVGLVVALAVILAGMVTDSLLSASWALDDGLLVAAAAVIGLALLLTRGRGRPEAR*
Ga0062590_1015794502	3300004157	Soil	MPSHDRWHRIRVGLVVALVLIFTGVVIDSLFSASWVIDDGLLLAAAAVIALALLVTRGRGRAEAT*
Ga0062591_1001538152	3300004643	Soil	MARDVRWHRIRVALVVAIVLIFAGVVIDSLLSASWVLDDGLLLAAAAVIALALLLTRGRGRPEAR*
Ga0062594_1021421171	3300005093	Soil	MARHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAG
Ga0066815_100535661	3300005164	Soil	GRQSYVWLMPRRVDWHRVRVGLVVALIIILAGLVIDSLFSASWALDDGLLLAAAVIALVLLVTRGRGRSEAR*
Ga0068869_1005800113	3300005334	Miscanthus Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAGGARTEPRP*
Ga0070660_1002068364	3300005339	Corn Rhizosphere	MPRGVHGRRVRIALAAAIVLIFAGVVLDSFLSASWALDDGLLLAAGVIVLALVLTRGRGRSEAR*
Ga0070675_1007473623	3300005354	Miscanthus Rhizosphere	WRMPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFTRGRGRAEAR*
Ga0070701_110811002	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALA
Ga0070663_1011829462	3300005455	Corn Rhizosphere	MPRGVHWRRVRIALAAAIVLIFAGVVLDSFLSASWALDDGLLLAAGVIVLALVLTRGRGRSEAR*
Ga0070698_1005448832	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MPRGVDWHRVRVGLVVALIIIFAGVAIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRPEAR*
Ga0070696_1019066532	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	HARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAGGARTEPRP*
Ga0070665_1013507711	3300005548	Switchgrass Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAG*
Ga0068870_101170692	3300005840	Miscanthus Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR*
Ga0097621_1006004482	3300006237	Miscanthus Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAGAAVIALALLLTRGRGRAEAR*
Ga0074051_111487812	3300006572	Soil	WLMPRHVHWHRVRVGLVVALILIFAGVVIDSLLSASWALDDGLLLAAAAVIVLALLLTRDRGRSEAK*
Ga0074055_118662551	3300006573	Soil	MPRRVDWHRVRVGLVVALIIILAGLVIDSLFSASWALDDGLLLAAAVIALVLLVTRGRGRSQAR*
Ga0074053_118353172	3300006575	Soil	MLRAAHWHRVRVGLVLSLVLIFAGIVVDSLFSASWVLDDGLLLAAAVIITLALVRIRGRDQT*
Ga0074047_111601503	3300006576	Soil	MRVGLVAALVLIFAGVVVDSLFSASWALDDGLLLAAAAVIVLALLLTRGRGRAEATR*
Ga0074047_116367871	3300006576	Soil	MRRDVRWHRVRVGLVVALIVIFAGVVTDSFLSASWVLDDGLLLAAAAVIGLALFLTRGRGLPEAGSANESPTRG*
Ga0074050_114732602	3300006577	Soil	YIWLMPRHVHWHRVRVGLVVALILIFAGVVIDSLLSASWALDDGLLLAAAAVIVLALLLTRDRGRSEAK*
Ga0074050_119430752	3300006577	Soil	MRRHVRWHRVRVGLVVALIVIFAGVVTDSFLSASWVLDDGLLLAAAAVIGLALFLTRGRGLPEAGSANESPTRG*
Ga0074050_120987842	3300006577	Soil	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLTAAAVIALALLVTRGRGQSQAR*
Ga0074054_121782101	3300006579	Soil	VIGSAVDLYIWLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALVLLVTRGRGRSEAR*
Ga0074048_100385041	3300006581	Soil	AASPLSSSFQRRYLWAMRRHVRWHRVRVGLVVALIVIFAGVVTDSLLSASWVLDDGLLLAAAAVIGLALFLTRGRGRPEAGSADESPTRG*
Ga0074048_100554632	3300006581	Soil	MRRHVRWHRVRVGLVVALIVILAGVVTDSFLSASWVLDDGLLLAAAAVIGLALFLTRGRGLPEAGSANESPTRG*
Ga0074057_119428532	3300006605	Soil	MRRHVRWHRVRVGLVVALIVIFAGVVTDSLLSASWVLDDGLLLAAAAVIGLALFLTRGRGRPEAGSADESPTRG*
Ga0066710_1014461942	3300009012	Grasslands Soil	MLRDARWHRARVALVVSLIVIFVGIVIDSLFSASPALDDGLLLAAAAVIGLALLLIRGRGQA
Ga0066709_1011657172	3300009137	Grasslands Soil	MLRDARWHRARVALVVSLIVIFVGIVIDSLFSASPALDDGLLLAAAAVIGLALLLIRGRGQA*
Ga0105242_116530332	3300009176	Miscanthus Rhizosphere	MLRDAHWHRVRVGLVVALIIIFAGIMLDSAFSASWALDDGLLLAAAAVVALALFLTRGRSRP*
Ga0134062_101268703	3300010337	Grasslands Soil	MRWIPSYIWFMPRHVHWHRVRVGLVVALILIFAGVMIDSLLSASWALDDGLLLAAAAVIALALLLTRGHGRSEAR*
Ga0134122_126955202	3300010400	Terrestrial Soil	MLRDPHWHRVRVVLVLLLVLLFAGIVIDSLFSASWALDDGLLLAAAAVIALVLVRIRGRGQA*
Ga0134121_106241002	3300010401	Terrestrial Soil	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFRRGRGRAEAR*
Ga0134121_131800562	3300010401	Terrestrial Soil	MLRDPHRRRVRVVLVLVLVLIVAGIVIDSLFSASWALDDGLLLAAAAVIALALVRLRDRGNA*
Ga0134123_110612132	3300010403	Terrestrial Soil	MLRDPHWHRVRVVLVLVLVLLFAGIVIDSLFSASWALDDGLLLAAAAVIALVLVRIRGRGQA*
Ga0138505_1000181511	3300010999	Soil	MPSHWHRVRIGLVVALILIFAGVVIDSLLSASWALDDGLLLAAAVVIALALLLTRGRGRAKADAP*
Ga0138513_1000084273	3300011000	Soil	MPRHVRWHRVRVGLVVALVIIFAGVVIDSLFSASWALDDGLLLTAAAVIALALLVTRGRGRSEAR*
Ga0138514_1001465151	3300011003	Soil	MPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGLLLAAAAVIALALLVTRGRGRPEAK*
Ga0105246_104693392	3300011119	Miscanthus Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFTRGRGRAEAR*
Ga0137455_12235202	3300011429	Soil	MRRDVRWHRVRVGLVVALIVIFAGVVTDSLLSASWVLDDGLLLAVAAVIGLALFLTRGRGRPEAGSANESPTRG*
Ga0137364_107979302	3300012198	Vadose Zone Soil	MLRDARWHRARVALVVSLIVIFVGIVIDSLFSANWALDDGLLLTAAAVIALALLVTRGRGRPEAR*
Ga0137371_102051351	3300012356	Vadose Zone Soil	DGPSIYIWLMPRHVRWHRVRVGLAVALIIIFAGVVIDSFFSASWALDDGLLLAAAAVIALALLLTRARGRSEAR*
Ga0157299_101707401	3300012899	Soil	MARHIRWRRLRVGLAVALILIFAGVVTDSLLSASWALDDGLLLAAAAIIALALLLTRGRGRP
Ga0162650_1000303742	3300012939	Soil	MPRHVRWHRVRVGLVVALIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR*
Ga0162652_1000407341	3300012941	Soil	RQLRWHKVRVGLVVALVVIFAGVVIDSLFSASWALDDGLLLTAAAVIALALLVTRGRGRSEAR*
Ga0164241_104922612	3300012943	Soil	MPSHGRWHRIRVGLVVALALIFAAVVVDSLFSASWVLDDGLLLAAAAVIALALLLTRGRGRTEVR*
Ga0164300_101404822	3300012951	Soil	MPSHDRWHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR*
Ga0134087_101920592	3300012977	Grasslands Soil	MFGHAHWHRARIGLVLSLILIFAGILVDSLLSASPALDDGLLLAAAAVIALALLLIRGRGNA*
Ga0164305_114408962	3300012989	Soil	MPSHVHRHRVRVGLVLALILVFAGVVIDSLFSASWALDDGLLLAAAAVIALALLLTRGRSRTGEM*
Ga0157373_100399761	3300013100	Corn Rhizosphere	MPRGVHGRRVRIALAAAIVLIFAGVVLDSFLSASWALDDGLLLAAGVIVLALVLTRGRSRSEAR*
Ga0157377_102915972	3300014745	Miscanthus Rhizosphere	IRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAGKARTEPRP*
Ga0182030_111817122	3300014838	Bog	MLHHCLDRSRVGLVIALVLVCGGVVLDSLLSAAWALDDGLLLAAAGMIVLALRLGRGRV*
Ga0132258_122848302	3300015371	Arabidopsis Rhizosphere	MPNHDRWHRIRVGLVVALVLIFTGVVTDSLFSASWVLDDGLLLAAAAVIALVLFLTRGRGRAEAR*
Ga0132256_1001942684	3300015372	Arabidopsis Rhizosphere	MPSHDRRHRVRVGLVVALILVFTGVVIDSLFSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR*
Ga0132256_1002576281	3300015372	Arabidopsis Rhizosphere	MSRHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRDRGRREAGGARTEPRP*
Ga0132256_1007419722	3300015372	Arabidopsis Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSLLSASWALDDGLLLAAAAVIALALLVTRGLGRPEAR*
Ga0132257_1001345474	3300015373	Arabidopsis Rhizosphere	MPSHDRRHRVRVGLVVALVLIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFRRGRGRAEAR*
Ga0132257_1005627812	3300015373	Arabidopsis Rhizosphere	VTAILRDAQWHRVRVGLVLALILVLAGIVLDSLFSASRVLDDALLVAAAVVILVLLVGTRGRGPS*
Ga0163161_110214441	3300017792	Switchgrass Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR
Ga0184610_11112562	3300017997	Groundwater Sediment	SIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0184608_100008502	3300018028	Groundwater Sediment	VSARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0184608_100020434	3300018028	Groundwater Sediment	MPRHVRWHRLRVGLVVALILIFAGVVTDSLLSASWALDDGLLLVAAAGIALALLLTRGRGQA
Ga0184608_103782011	3300018028	Groundwater Sediment	MPRHVRWHRVRVGLVVGLIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALTLLVTRGRGRSEAR
Ga0184634_105667861	3300018031	Groundwater Sediment	SIYIWLMLRQVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLTAAAVIGLALVVTRGRDRSEAR
Ga0184620_102784422	3300018051	Groundwater Sediment	MLRQVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0184638_11053441	3300018052	Groundwater Sediment	MPRHVRWHRLRVGLVVALILIFAGVVTDSLLSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0184621_100049085	3300018054	Groundwater Sediment	SPTSSSDGPSIYIWLMLRQVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0184617_11504131	3300018066	Groundwater Sediment	MPRHVRWHRLRVGLVVALILIFAGVVTDSLLSASWALDGLLLAAPAVIALALLLTRGRGRPEAR
Ga0184618_100522223	3300018071	Groundwater Sediment	VSARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDIGVLLAAAAVIALVLLVTRGRGRSEAR
Ga0184635_101382482	3300018072	Groundwater Sediment	MPSHVHWHRVRVGLVLALILIFAGVVIDSLFSASWALDDGLLLAAAAVIALALVLTRGRGRTEAEM
Ga0184624_103919341	3300018073	Groundwater Sediment	VRVGLVVALVLIFAGVVVDSLFSASWDLDDGLLLAAAAVIALALLLARGRGRAEVR
Ga0184624_105070442	3300018073	Groundwater Sediment	MPSPDRWHRIRIGLVVALVLILAGVVVDSLFSASWALDDGLLLAAAAVIALALLLTRGRGRAEVR
Ga0184632_102570473	3300018075	Groundwater Sediment	MPRHVRWHRLRVGLVVALILIFAGVVTDSLLSASWALDDGLLLAAAAVIALALLLTRGRGQA
Ga0184625_100614781	3300018081	Groundwater Sediment	IGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDIGVLLAAAVIALLLLVTRGRGRSEAT
Ga0184625_105047061	3300018081	Groundwater Sediment	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLLSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0190274_134030652	3300018476	Soil	MPRDASWHRIRVGLVVALAVILAGMVTDSLLSASWALDDGLLVAAAAVIGLALLLTRGRGRPEAR
Ga0173481_102816091	3300019356	Soil	SHDRWHRIRVGSVVALALIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLLTRGRGRAEAR
Ga0173482_106059731	3300019361	Soil	GRAVLIMLSASIYIWLMPRGVDWHRLLVGLVVALIIIFAGVAIDSFFSTSWAVDDGLLLAAAAVIALALLVTRGGGRPEAS
Ga0190267_104141452	3300019767	Soil	MPRLVRWHGARVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0193747_10300051	3300019885	Soil	MPRHVRWHRIRVGLVVALIVIFAGVVIDSLFSASWALDDGLLLTAAAIIALALVVTRRRARSEAR
Ga0193697_10226372	3300020005	Soil	MLRQVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALTLLVTRGRGRSEAR
Ga0193732_10633521	3300020012	Soil	GSPGLASSMMWIPPYIWLMPRHVHWHRVRLGLVVALILIFAGVAIDSLLSASWALDDGLLLAAAAVIALALLLTRGHGRSEAR
Ga0210380_101411142	3300021082	Groundwater Sediment	MRRDVRWHRVRVGLVVALIVIFAGVVTDSLLSASWVLDDGLLLVAAAVIGLALFLTRGRGRPEAGSANESPTRG
Ga0222622_114524562	3300022756	Groundwater Sediment	MPSHDRWLRIRVGLVVGLVLILAGVVIDSLFSASWALDDGLLLAAAAVIALALLLARGRGRAEVR
Ga0207643_101113081	3300025908	Miscanthus Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFRRGRGRAEAR
Ga0207707_111353921	3300025912	Corn Rhizosphere	MPRGVHGRRVRIALAAAIVLIFAGVVLDSFLSASWALDDGLLLAAGVIVLALVLTRGRGRSEAR
Ga0207659_106810841	3300025926	Miscanthus Rhizosphere	SHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR
Ga0207709_117882861	3300025935	Miscanthus Rhizosphere	MLRDPHWHRVRLVLVLVLVLLFAGIVIDSLFSASWALDDGLLLAAAAVIALVLVRIRGRGQA
Ga0207689_104178402	3300025942	Miscanthus Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSVLSASWVLDDGLLLTAAAVIALALLFTRGRGRAEAR
Ga0207683_102452711	3300026121	Miscanthus Rhizosphere	MPSHDRRHRVRVGLVVALILIFTGVVIDSLFSASWVLDDGLLLAAAAVIALALLFTRGRGRAEAR
Ga0268264_115464272	3300028381	Switchgrass Rhizosphere	MARHARWHRIRVGLVVALILIFAGVVVDSFLSASWVLDDGLLLAAAAVIALALLLTRGRGRREAGGARTEPRP
Ga0307291_12086482	3300028707	Soil	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALL
Ga0307295_100932432	3300028708	Soil	PCHVRWHRVRVGLVVGLIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307322_100925092	3300028710	Soil	VSARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307293_102560581	3300028711	Soil	MPCHVRWHRVRVGLVVGLIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307313_100238672	3300028715	Soil	MPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0307313_101269101	3300028715	Soil	IWLMPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307298_102689321	3300028717	Soil	YIWLMPRHVRWHRIRVGLVVALIVIFAGVVIDSLFSASWALDDGLLLTAAAIIALALVVTRRRARSEAR
Ga0307307_100326791	3300028718	Soil	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0307318_100637151	3300028744	Soil	MGRSIYIWLMPRHVRWHRVRVGLVVALIIVFAGVVIDSLYSASWALDDGLLLAAAAVIALALLVTRGRGQSEAR
Ga0307316_102502312	3300028755	Soil	GMSPTSSSDGPSIYIWLMLRQVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307280_100310843	3300028768	Soil	VSARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAR
Ga0307320_100679341	3300028771	Soil	MPRHVRWHRVRVGLVVALIVIFAGVVIDSLFSASWALDDGLLLTAAAVIGLALVVT
Ga0307320_101879862	3300028771	Soil	DANVAWAVFGNVTRARESESIYIWLMPCHVRWHRVRVGLVVGLIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307282_100786622	3300028784	Soil	MPRHVRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307323_100050665	3300028787	Soil	MPSHDRWHRIRVGLVVALVLIFAGVVIDSLFSASWALDDGLLLAAAAAIALALLLARGRGRAER
Ga0307287_100346231	3300028796	Soil	GDTPYLLWMLRDAHWHRVRAGLVLLLVLIFAGIVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307287_100866463	3300028796	Soil	MPRHVRWHRVRVGFVVALIVIFAGVVIDSLFSASWALDDGLLLTAAAVIGLALVVTRGRDRSEAR
Ga0307284_100512632	3300028799	Soil	VFGNVTRARESESIYIWLMPCHVRWHRVRVGLVVGLIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307503_100400803	3300028802	Soil	MLRDPHWHRVRVVLVLLLVLLFAGIVIDSLFSASWALDDGLLLAAAAVIGLALVRIRGRGQA
Ga0307281_100096172	3300028803	Soil	MGLSTQSASSSTSIGGSPGLASPMMWIPPYIWLMPRHVHWHRVRVGLVVALILIFAGVVIDSLLSASWALDDGLLLAAAAVIALALLLTRGHGRSEAR
Ga0307305_100003255	3300028807	Soil	MPRHVDWHRVRVGLVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0307305_101288302	3300028807	Soil	MPRHVDWHRVRVGLLVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVIALVLLVTRGRGRSEAR
Ga0307302_101003961	3300028814	Soil	MPRHGRWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLV
Ga0307296_106086942	3300028819	Soil	VGLVVGLVLILAGVVVDSLFSASWVLDDGLLVAAAAVIALALLVTRGRGRAEAR
Ga0307312_109608622	3300028828	Soil	MPRHVRWHRLRVGLVVALILIFAGVVTDSLLSASWALDDGLLLAAAAVIALALLLTRGRGRPEAR
Ga0302259_11054971	3300028861	Fen	MLREARRHRLRFGLVLSLILICVGIVIDSLLSASWALDDGLLLAAAAVIALALLLTRGGGNA
Ga0302254_100659193	3300028870	Fen	MLREPHRHRLRVGLVLSLILICVGIVIDSLLSASWALDDGLLLAAAAVIALALLLTRGGGNA
Ga0307289_100153782	3300028875	Soil	VSARCLVIPAGPSIYIGLMLRHVEWHRVRVGLVVALIIIFAGVVIDSLFSASWALDIGVLLAAAAVIALVLLVTRGRGRSEAT
Ga0307289_101143341	3300028875	Soil	MPSHDRWHRIRVGLVVALVLIFAGVVIDSLFSASWALDDGLLLAAAAAIALALLLARGRGRAE
Ga0307286_101287202	3300028876	Soil	VSARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDVGVLLAAAAVLALVLLVTRGRGRSEAT
Ga0307286_102943532	3300028876	Soil	MGRSIYIWLMPRHVRWHRVRVGLVVALIIVFAGVVIDSLYSASWALDDGLLLAAAAVIALALLVTRG
Ga0311332_100638185	3300029984	Fen	MLREARRHRLRVGLVLSLILICVGIVIDSLLSASWALDDGLLLAAAAVIALALLLTRGGGNA
Ga0311333_100949423	3300030114	Fen	MLREPHRHRLRVGLVLSLILIFAGIVTDSLLSASWVLDGGVLLAAAAVIALALLLTRGHGAA
Ga0308193_10715752	3300031096	Soil	SARCLVIPAGPSIYIGLMPRHVDWHRVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307497_101557242	3300031226	Soil	MPRNVRWHKVRVGLVVALIIIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLATRGRGRSESS
Ga0308194_101851842	3300031421	Soil	WHKVRVVLVVALILIFAGVVIDSLFSASWALDDGLLLAAAAVIALALLVTRGRGRSEAR
Ga0307469_102261861	3300031720	Hardwood Forest Soil	MGPSIYIWLMPRHVRWHRFRVGLVVALIIIFTGVVIDSLFSASWALDVGLLLAAAAIIALALLVTRGRGRSEAR
Ga0302321_1002623233	3300031726	Fen	MLREPHRHRLRLGLVLSLILIFAGIVTDSLLSASWVLDGGVLLAAAAVIALALL
Ga0310892_106665432	3300031858	Soil	MARHARWHRIRVGLVVALILIFAGVVVDSLLSASWVLDDGLLLAAAAVIALALLLT
Ga0302322_1000385931	3300031902	Fen	MLREPHRHRLRLGLVLSLILIFAGIATDSLLSASWVLDDGVLLAAAAVIALALLLTRGHGAA
Ga0311367_110605482	3300031918	Fen	MLREPHRHRLRLGLVLSLILIFAGIVTDSLLSASWALDDGVLLAAAAVIALALLLTRGHGAA
Ga0308176_117537381	3300031996	Soil	PRHVGWHRVRVGLVVALILIFAGVVIDSLFSASWALDDGLLLTAAAVIAMALLLTRRWGRSEAR
Ga0308176_127628141	3300031996	Soil	MPRHVGWHRVRVGLVVALILIFAGVVIDSLFSASWALDDGLLLTAAAVIAMALLLTRRWGRS
Ga0335071_104004531	3300032897	Soil	MPRDIHRRRVRIALVAALVLIFAGMVLDSLLSAGWALDDGLLLLAAVLIALVLVLTRARSEAR
Ga0364941_101393_517_693	3300034417	Sediment	MRRDVRWHRVRVGLVVALIVIFAGVVTDSLLSASWALDDGLLLAAAAVIALALLVTRGR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050448

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences