Metagenome / Metatranscriptome Family F050277

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F050277
Family Type	Metagenome / Metatranscriptome
Number of Sequences	145
Average Sequence Length	44 residues
Representative Sequence	DGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Number of Associated Samples	113
Number of Associated Scaffolds	145

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.38 %
% of genes near scaffold ends (potentially truncated)	97.93 %
% of genes from short scaffolds (< 2000 bps)	90.34 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.55

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.483 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (46.207 % of family members)
Environment Ontology (ENVO)	Unclassified (62.069 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (77.241 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 36.62% Coil/Unstructured: 63.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.55
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.55
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 145 Family Scaffolds
PF00873	ACR_tran	55.86
PF13557	Phenol_MetA_deg	8.97
PF02321	OEP	6.21
PF00892	EamA	4.14
PF00355	Rieske	2.07
PF07690	MFS_1	0.69
PF04241	DUF423	0.69
PF16576	HlyD_D23	0.69

COG ID	Name	Functional Category	% Frequency in 145 Family Scaffolds
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	12.41
COG2363	Uncharacterized membrane protein YgdD, TMEM256/DUF423 family	Function unknown [S]	0.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.48 %
Unclassified	root	N/A	5.52 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	32.41 %
Unclassified	root	N/A	5.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.07 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	32.41 %
Unclassified	root	N/A	5.52 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	10.34 %
Unclassified	root	N/A	5.52 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	2.07 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.34 %
Unclassified	root	N/A	5.52 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	2.07 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.34 %
Unclassified	root	N/A	5.52 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2.07 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.34 %
Unclassified	root	N/A	5.52 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	0.69 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	10.34 %
Unclassified	root	N/A	5.52 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	0.69 %
Opitutaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium	0.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459007\|GJ61VE201C12TC	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	510	Open in IMG/M
2170459009\|GA8DASG02IYW2C	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
2189573004\|GZGWRS402JMKAD	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	500	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_100201217	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300000955\|JGI1027J12803_104031725	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300000955\|JGI1027J12803_106063763	All Organisms → cellular organisms → Bacteria	990	Open in IMG/M
3300000955\|JGI1027J12803_108410392	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	607	Open in IMG/M
3300005166\|Ga0066674_10046050	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium	1959	Open in IMG/M
3300005166\|Ga0066674_10195708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	961	Open in IMG/M
3300005166\|Ga0066674_10232890	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	875	Open in IMG/M
3300005172\|Ga0066683_10082069	All Organisms → cellular organisms → Bacteria	1943	Open in IMG/M
3300005172\|Ga0066683_10239593	All Organisms → cellular organisms → Bacteria	1124	Open in IMG/M
3300005172\|Ga0066683_10548745	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	705	Open in IMG/M
3300005178\|Ga0066688_10130637	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1560	Open in IMG/M
3300005181\|Ga0066678_11122765	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005186\|Ga0066676_10128245	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1573	Open in IMG/M
3300005186\|Ga0066676_10698730	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005187\|Ga0066675_10413444	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	997	Open in IMG/M
3300005187\|Ga0066675_10539275	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300005364\|Ga0070673_101747846	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300005454\|Ga0066687_10263396	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300005468\|Ga0070707_100487325	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300005545\|Ga0070695_101114494	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	646	Open in IMG/M
3300005558\|Ga0066698_10464908	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	862	Open in IMG/M
3300005558\|Ga0066698_10692489	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005559\|Ga0066700_10293625	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300005559\|Ga0066700_10522483	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300005568\|Ga0066703_10183579	All Organisms → cellular organisms → Bacteria	1265	Open in IMG/M
3300005568\|Ga0066703_10650953	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300005569\|Ga0066705_10197254	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300005569\|Ga0066705_10967888	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300005574\|Ga0066694_10431057	All Organisms → cellular organisms → Bacteria	618	Open in IMG/M
3300005574\|Ga0066694_10628555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	501	Open in IMG/M
3300005576\|Ga0066708_10151461	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300005586\|Ga0066691_10173729	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300005598\|Ga0066706_11020160	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	637	Open in IMG/M
3300005598\|Ga0066706_11104515	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300005764\|Ga0066903_103412048	All Organisms → cellular organisms → Bacteria	857	Open in IMG/M
3300006031\|Ga0066651_10050219	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1949	Open in IMG/M
3300006031\|Ga0066651_10630028	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300006046\|Ga0066652_101572827	Not Available	606	Open in IMG/M
3300006791\|Ga0066653_10452438	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300006796\|Ga0066665_10053486	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2793	Open in IMG/M
3300006796\|Ga0066665_10942155	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300006797\|Ga0066659_10920581	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300006797\|Ga0066659_11934977	Not Available	501	Open in IMG/M
3300009137\|Ga0066709_101453052	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	993	Open in IMG/M
3300009147\|Ga0114129_10216094	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2589	Open in IMG/M
3300010046\|Ga0126384_11505161	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	631	Open in IMG/M
3300010303\|Ga0134082_10097835	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300010320\|Ga0134109_10432275	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	532	Open in IMG/M
3300010323\|Ga0134086_10012242	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2659	Open in IMG/M
3300010326\|Ga0134065_10219285	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300010329\|Ga0134111_10258543	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	716	Open in IMG/M
3300010329\|Ga0134111_10496071	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300010333\|Ga0134080_10146178	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1000	Open in IMG/M
3300010358\|Ga0126370_12112596	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010358\|Ga0126370_12252858	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010364\|Ga0134066_10220788	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300010396\|Ga0134126_12370508	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300011270\|Ga0137391_11011062	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	676	Open in IMG/M
3300012198\|Ga0137364_10563253	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300012200\|Ga0137382_10180794	All Organisms → cellular organisms → Bacteria	1443	Open in IMG/M
3300012202\|Ga0137363_10850469	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300012205\|Ga0137362_10647679	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300012206\|Ga0137380_10965925	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	730	Open in IMG/M
3300012207\|Ga0137381_10842182	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	794	Open in IMG/M
3300012208\|Ga0137376_11325405	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012209\|Ga0137379_10396149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1290	Open in IMG/M
3300012210\|Ga0137378_10765774	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300012353\|Ga0137367_10677026	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	719	Open in IMG/M
3300012354\|Ga0137366_10564258	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	819	Open in IMG/M
3300012354\|Ga0137366_11125003	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300012354\|Ga0137366_11220386	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	510	Open in IMG/M
3300012361\|Ga0137360_10619456	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300012362\|Ga0137361_10106623	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2447	Open in IMG/M
3300012532\|Ga0137373_11065492	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	581	Open in IMG/M
3300012930\|Ga0137407_10619177	All Organisms → cellular organisms → Bacteria	1017	Open in IMG/M
3300012948\|Ga0126375_11846048	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	529	Open in IMG/M
3300012961\|Ga0164302_11302599	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300012972\|Ga0134077_10491212	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300012975\|Ga0134110_10201107	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300012977\|Ga0134087_10743809	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300014154\|Ga0134075_10318318	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300014157\|Ga0134078_10276205	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300015357\|Ga0134072_10114441	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	847	Open in IMG/M
3300015359\|Ga0134085_10599970	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300016294\|Ga0182041_11719494	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300016422\|Ga0182039_12244755	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	504	Open in IMG/M
3300017657\|Ga0134074_1099095	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300018433\|Ga0066667_11185908	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300018433\|Ga0066667_11256524	Not Available	646	Open in IMG/M
3300018468\|Ga0066662_12123326	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300018468\|Ga0066662_12916598	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300018482\|Ga0066669_10443654	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300018482\|Ga0066669_12307350	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	513	Open in IMG/M
3300019883\|Ga0193725_1074566	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	833	Open in IMG/M
3300021168\|Ga0210406_10838132	All Organisms → cellular organisms → Bacteria	697	Open in IMG/M
3300021560\|Ga0126371_10031351	All Organisms → cellular organisms → Bacteria	4980	Open in IMG/M
3300024288\|Ga0179589_10065598	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300026300\|Ga0209027_1210376	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300026306\|Ga0209468_1007209	All Organisms → cellular organisms → Bacteria	4222	Open in IMG/M
3300026308\|Ga0209265_1029280	All Organisms → cellular organisms → Bacteria	1706	Open in IMG/M
3300026309\|Ga0209055_1233540	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300026312\|Ga0209153_1293899	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	520	Open in IMG/M
3300026317\|Ga0209154_1319674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	509	Open in IMG/M
3300026322\|Ga0209687_1243874	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	556	Open in IMG/M
3300026323\|Ga0209472_1038081	All Organisms → cellular organisms → Bacteria → Proteobacteria	2144	Open in IMG/M
3300026323\|Ga0209472_1151404	All Organisms → cellular organisms → Bacteria	868	Open in IMG/M
3300026324\|Ga0209470_1087725	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300026324\|Ga0209470_1098837	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1313	Open in IMG/M
3300026326\|Ga0209801_1020022	All Organisms → cellular organisms → Bacteria	3295	Open in IMG/M
3300026326\|Ga0209801_1335988	Not Available	532	Open in IMG/M
3300026327\|Ga0209266_1236578	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300026330\|Ga0209473_1162997	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	891	Open in IMG/M
3300026334\|Ga0209377_1084869	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1340	Open in IMG/M
3300026334\|Ga0209377_1085122	All Organisms → cellular organisms → Bacteria	1337	Open in IMG/M
3300026335\|Ga0209804_1057599	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	1876	Open in IMG/M
3300026342\|Ga0209057_1241611	Not Available	513	Open in IMG/M
3300026528\|Ga0209378_1075448	All Organisms → cellular organisms → Bacteria	1540	Open in IMG/M
3300026528\|Ga0209378_1259720	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300026529\|Ga0209806_1296570	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	543	Open in IMG/M
3300026532\|Ga0209160_1186848	Not Available	844	Open in IMG/M
3300026536\|Ga0209058_1217759	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300026536\|Ga0209058_1218356	Not Available	736	Open in IMG/M
3300026538\|Ga0209056_10372001	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300026550\|Ga0209474_10147804	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300026550\|Ga0209474_10378979	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300026552\|Ga0209577_10066555	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	2993	Open in IMG/M
3300026555\|Ga0179593_1167915	All Organisms → cellular organisms → Bacteria	2126	Open in IMG/M
3300027018\|Ga0208475_1001050	All Organisms → cellular organisms → Bacteria	2471	Open in IMG/M
3300030916\|Ga0075386_11634484	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300031128\|Ga0170823_13601541	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300031469\|Ga0170819_16331658	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300031744\|Ga0306918_10901477	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031879\|Ga0306919_11002737	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300031910\|Ga0306923_10050179	All Organisms → cellular organisms → Bacteria	4603	Open in IMG/M
3300031941\|Ga0310912_10582545	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300031942\|Ga0310916_11636218	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300031945\|Ga0310913_10442647	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	923	Open in IMG/M
3300032001\|Ga0306922_10052358	All Organisms → cellular organisms → Bacteria	4225	Open in IMG/M
3300032180\|Ga0307471_100046310	All Organisms → cellular organisms → Bacteria	3542	Open in IMG/M
3300032261\|Ga0306920_101547070	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300032261\|Ga0306920_102859266	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300033289\|Ga0310914_10998633	Not Available	737	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.62%
Host-Associated	Host-Associated	1.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.62%
Plants	Host-Associated → Plants	1.38%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.38%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	95.86%
Loam	Environmental → Terrestrial → Soil → Loam	2.76%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.69%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.69%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	53.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.03%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.72%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.38%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.69%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	46.21%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.79%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	11.03%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.52%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.14%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.38%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.38%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.38%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.69%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.69%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.69%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.69%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.69%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459007	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 10-21cm	Environmental	Open in IMG/M
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
2189573004	Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen)	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014154	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015	Environmental	Open in IMG/M
3300014157	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300026300	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026306	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102 (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026538	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027018	Grasslands soil microbial communities from Kansas, USA, that are Nitrogen fertilized - NN575 (SPAdes)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
L02_01405730	2170459007	Grass Soil	TTVPTLKGARGVIAAKDETAYLIDPAHGRILKLIHK
F47_05483500	2170459009	Grass Soil	LTVAAVDDHGKFHLKTTVPTVKGARGVIAAKDEAAYLIDPAHGRILKLIHK
FG2_08750990	2189573004	Grass Soil	VNDHGKFHLKTTVATVKGARGVIAGKDETAYLIDPIHGCILKLTHK
INPhiseqgaiiFebDRAFT_1002012172	3300000364	Soil	KALVPTAKGARGVIAGKGETAYLIDPVDGRILKLTRK*
JGI1027J12803_1040317251	3300000955	Soil	TIAEVGDDGKFHLRATVPTVKGARGVVAGKDETAYLIDPAEGRILKLIRK*
JGI1027J12803_1060637633	3300000955	Soil	DVDDQGKFHLKATVPTAKGARGVVAGEGETAYLIDPAEGRILKLIRK*
JGI1027J12803_1084103921	3300000955	Soil	TVPTVRGARGVIAAKGDTAYLIDPAEGRILKMTHK*
Ga0066674_100460501	3300005166	Soil	IAEVGDDGKFRLKATVPAVKGARSVVAGKGETAYLIDPAQGRILKLIRK*
Ga0066674_101957083	3300005166	Soil	TAAKVDDYGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLTRK*
Ga0066674_102328902	3300005166	Soil	TAAKVDDYGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLTHK*
Ga0066683_100820693	3300005172	Soil	KALVPTVKGARGVVAGKGETAYLIDPAEGRILKLTHKSHDETKDR*
Ga0066683_102395931	3300005172	Soil	EVGDAGKFHLKATVPTVKGARGVVAGSGDTAYLIDPAEGCILKVTRK*
Ga0066683_105487451	3300005172	Soil	SIIEVGNDGKFHLKALVPTVKGARGVVAAKGETAYLIDPAEGRILKMIHK*
Ga0066688_101306371	3300005178	Soil	GKFHLKATVPTVKGARSVVAAGNETAYVIDPAEGKILKVSPK*
Ga0066678_111227651	3300005181	Soil	TIAEVGDDGKFHLKATVPTVKGARSVVAGKGETAYVIDPAAGRILKLLRK*
Ga0066676_101282451	3300005186	Soil	EVGDDGKFRLKATVPAVKGARSVVAGKGETAYLIDPAQGRILKLIRK*
Ga0066676_106987302	3300005186	Soil	DDYGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLTRK*
Ga0066675_104134442	3300005187	Soil	DGKFHLKATVPTVKGARSVVAAGNETAYVIDPAEGKMLKVSPK*
Ga0066675_105392753	3300005187	Soil	LSIAEVGHAGKFHLKATLPTVKSARGVVAGSGDTAYLIDPAEGRILKVTRK*
Ga0070673_1017478461	3300005364	Switchgrass Rhizosphere	TIAEVSDDGKFHVKALVPTAKEARGVIATKGKTAYLIDPAEGRILKLSHR*
Ga0066687_102633961	3300005454	Soil	LSIIEVGDDGKFRLQSLVPTVKGARGVVAGKGETAYLIDPVEGRILKLKHK*
Ga0070707_1004873252	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	IAEVGDDGKFHLRATVPTVKGARSVVAGKGETAYLIDPAEGRILKLVRK*
Ga0070695_1011144942	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	TIAGVDDQGKFHLVRTVETVKGARGVIAGKPGTAYLIDPVGGRILKLTHN*
Ga0066698_104649081	3300005558	Soil	HLRATVPTVKGVRGVVAGKGETAYLIDPAEGRILKLIHK*
Ga0066698_106924892	3300005558	Soil	GKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLIRK*
Ga0066700_102936252	3300005559	Soil	GKFHLKATVPTVKGARCVVAGKGETAYVIDPAEGRILKLIRK*
Ga0066700_105224833	3300005559	Soil	DDGKFRLQSLVPTVKGARGVVAGKGETAYLIDPVEGRILKLKHK*
Ga0066703_101835791	3300005568	Soil	IAEVDDRGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLRRK*
Ga0066703_106509532	3300005568	Soil	AEVGDHGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGCILKLTHK*
Ga0066705_101972541	3300005569	Soil	DHGKFHLKATVPTGKGVRGVVAGKCGTAYLIEPVEGRILKLTPK*
Ga0066705_109678882	3300005569	Soil	VPTVKGARSVVAAGNETAYVIDPAEGKILKVSPK*
Ga0066694_104310572	3300005574	Soil	QGKFQLKATVSTVKGARGVIAGKGETAYLIDPAEGRILKLTHK*
Ga0066694_106285552	3300005574	Soil	TVAEVGDDGKFRLKATVPAAKGARSVVAGNDETAYLIDPAQGRILKLIRK*
Ga0066708_101514612	3300005576	Soil	EVGDDGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK*
Ga0066691_101737292	3300005586	Soil	GKFHLKALAATAKGAGGVKAAKGQTAYLIDPAQGRILKITHKSHDETKDR*
Ga0066706_110201601	3300005598	Soil	ATVPTVKGARSVVAAGNETAYVIDPAEGKIMKVSPK*
Ga0066706_111045151	3300005598	Soil	GKFHLKATVPTVKGARGVVAGKDETAYMIDPAEGRILKLIRK*
Ga0066903_1034120482	3300005764	Tropical Forest Soil	GKFHLKATVPTVKGARSVVAGKGETAYLIDPAEGRILKLIHK*
Ga0066651_100502192	3300006031	Soil	IADVDDHGKFHRKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK*
Ga0066651_106300282	3300006031	Soil	VGDDGKFHLKATVPAVKGARSVVAAKDETAYLINPAEGRMLKLMRK*
Ga0066652_1015728271	3300006046	Soil	GKFHLKATVPTGKGVRGVIAGKGGTAYLIDPVEGRILKLVQK*
Ga0066653_104524382	3300006791	Soil	KATVPTAKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0066665_100534861	3300006796	Soil	EVGDDGKFHLKATVPTVKGARGVVAGKGGTAYLIDPVEGRILKLTPK*
Ga0066665_109421551	3300006796	Soil	YGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLIRK*
Ga0066659_109205812	3300006797	Soil	IAEVDDHGKFHLRATLPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0066659_119349772	3300006797	Soil	DDHGRFHPKATVPTVKGARGVVTGKGGTAYIIDPAGGRILKLTHK*
Ga0066709_1014530521	3300009137	Grasslands Soil	YGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLTHK*
Ga0114129_102160941	3300009147	Populus Rhizosphere	GKFHLKALVPTVKGARGVVAGKGETAYLIDPAAGRILKITHK*
Ga0126384_115051611	3300010046	Tropical Forest Soil	TVPTVKGARGVVAGKGETAYLIDPAEGKTLTLMRK*
Ga0134082_100978351	3300010303	Grasslands Soil	VPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0134109_104322752	3300010320	Grasslands Soil	KALVPTVKGARGVVAGKGETAYLIDPAEGRILKMTHK*
Ga0134086_100122422	3300010323	Grasslands Soil	EVGDDGKFHLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0134065_102192852	3300010326	Grasslands Soil	EVDDHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0134111_102585431	3300010329	Grasslands Soil	ATVPTAKGARGVVAGKGETAYVIDPAEGRILKLTHK*
Ga0134111_104960711	3300010329	Grasslands Soil	GKFHLKATVPTVKGARGVVAGKGETAYLIDPTEGRMLKLTRK*
Ga0134080_101461782	3300010333	Grasslands Soil	TIAEVDDNGKFHLKATVPTVKGARGVVAGKGETAYVIDPAEGRILKLTHK*
Ga0126370_121125962	3300010358	Tropical Forest Soil	KFYLKATVPTVKGARGVISAKGETAYLIDPAEGRILKMTHK*
Ga0126370_122528582	3300010358	Tropical Forest Soil	KATVPTVKGARSVVAGKGETAYLIDPAEGRILKLIHK*
Ga0134066_102207881	3300010364	Grasslands Soil	KATLPTVKSARGVVAGSGDTAYLIDPAEGRILKVTRK*
Ga0134126_123705081	3300010396	Terrestrial Soil	IAEVSDDGKFHVKALVPTAKEARGVIATKGKTAYLIDPAEGRILKLSHR*
Ga0137391_110110621	3300011270	Vadose Zone Soil	EVGDDGKFHLKATVPTVQGARSVVAGKGETAYLIDPAEGRILKLIRK*
Ga0137364_105632532	3300012198	Vadose Zone Soil	AEVDDHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0137382_101807941	3300012200	Vadose Zone Soil	KFHLKATVPTVKGARGVVAGKGETAYLIDPTEGRILKLTRK*
Ga0137363_108504692	3300012202	Vadose Zone Soil	TIAEVSDDGKFHVRALLPTAREARGVIAAKGKTAYLIDPAEGRILKLTHR*
Ga0137362_106476791	3300012205	Vadose Zone Soil	DGKFHLKATVPTVKGARGVIAARDETAYLIDPAEGGIVKVTRK*
Ga0137380_109659251	3300012206	Vadose Zone Soil	AEVDDHGKFHFKATVPTVKGARGVVAGERETAYLIGPAEGRILKLTHK*
Ga0137381_108421821	3300012207	Vadose Zone Soil	DGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK*
Ga0137376_113254052	3300012208	Vadose Zone Soil	DGKFHLKVTVPTVKGVRGVVAGKGETAYLIDPAEGRILKLTRK*
Ga0137379_103961493	3300012209	Vadose Zone Soil	HLNATVATIKGARGVVAGKGGTAYLIDPAEGRILKLTQK*
Ga0137378_107657743	3300012210	Vadose Zone Soil	VGDDGKFRLKALVPTVKGARGVVAGKDETAYLIDPADGRILKVIWK*
Ga0137367_106770262	3300012353	Vadose Zone Soil	GNDGKFHLKALVPTVKGARGVIAGKGETAYLIDPAEGRILKMIHK*
Ga0137366_105642581	3300012354	Vadose Zone Soil	VGDDGKFHLKALVPAVKGARGVVAGKGETAYLIDPAEGCILKLTHK*
Ga0137366_111250031	3300012354	Vadose Zone Soil	VGNDGKFHLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKMTHK*
Ga0137366_112203861	3300012354	Vadose Zone Soil	ATVPTVIGARGVGAGKGETAYLIDPAEGRILKLTRK*
Ga0137360_106194562	3300012361	Vadose Zone Soil	TLTIAEVGDDGKFHLKATVPTAKGARGVVAGKDETAYLIDPAEGRILKLIRK*
Ga0137361_101066231	3300012362	Vadose Zone Soil	ISTVKGMRGVIAGKGETAYLIDPAEGRILKLMRK*
Ga0137373_110654921	3300012532	Vadose Zone Soil	SGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGCILKLTHK*
Ga0137407_106191772	3300012930	Vadose Zone Soil	LKATVPTVRGTRGVIAAKGETAYLIDPAEGRILKLTHK*
Ga0126375_118460481	3300012948	Tropical Forest Soil	VGNDGKFRLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKMVHK*
Ga0164302_113025992	3300012961	Soil	ATVPTAKGARGVVAGNGDTAYLIDPAEGRILKLIRK*
Ga0134077_104912121	3300012972	Grasslands Soil	TVPTVKGARGVVAGKGKTAYLIDPAEGRILKLIRK*
Ga0134110_102011072	3300012975	Grasslands Soil	FHLKATVPTAKGARGVVAGKGDKAYLIDPAEGRILKLIRK*
Ga0134087_107438092	3300012977	Grasslands Soil	FHLKATLPTVKSARGVVAGSGDTAYLIDPAEGRILKVTRK*
Ga0134075_103183181	3300014154	Grasslands Soil	DDHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0134078_102762052	3300014157	Grasslands Soil	HGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK*
Ga0134072_101144411	3300015357	Grasslands Soil	EVGDDGKFRLQSLVPTVKGARGVVAGKGETAYLIDPVEGRILKLKHK*
Ga0134085_105999702	3300015359	Grasslands Soil	DHGKFHLRTTVPTVKGARGVVAGKGKTAYLIDPAEGRILKLIRK*
Ga0182041_117194941	3300016294	Soil	GKFYLKATVPTAKGARGVVAGKGDTAYLIDPAEGRILKLIRK
Ga0182039_122447551	3300016422	Soil	SDDGKFHLRATLPTAKGARSVIAGRGETAYLIDPAEGKILKLVPK
Ga0134074_10990951	3300017657	Grasslands Soil	EVGDDGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0066667_111859081	3300018433	Grasslands Soil	YGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLIRK
Ga0066667_112565241	3300018433	Grasslands Soil	LKATVPTVKGPGGVVTGRGATAYISDPAEGRILKLTHK
Ga0066662_121233261	3300018468	Grasslands Soil	ATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK
Ga0066662_129165982	3300018468	Grasslands Soil	LKATVPTAKGARGVVGGKGDTAYLIDPAEGRILKLIRK
Ga0066669_104436541	3300018482	Grasslands Soil	GKFHLKATVPTVKGVRGVVAGKGETAYLIDPAEGRILKLIRK
Ga0066669_123073501	3300018482	Grasslands Soil	DDGKFHLKALVPTAKGARGVIAGKGERAYLIDPIEGRILKMTHK
Ga0193725_10745661	3300019883	Soil	GKFSLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKMIHK
Ga0210406_108381321	3300021168	Soil	DVNDHGKFHLKTTVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0126371_100313514	3300021560	Tropical Forest Soil	LKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0179589_100655981	3300024288	Vadose Zone Soil	ADVNDHGNFHLKTTVPTVKGARGVVAGKGETAYLIDPAEARILKLTRK
Ga0209027_12103761	3300026300	Grasslands Soil	DDHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK
Ga0209468_10072093	3300026306	Soil	FHLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK
Ga0209265_10292801	3300026308	Soil	DDGKFHLKATVPTVKGARGVIAAKDETAYLIDPAEGSIVKVTRK
Ga0209055_12335401	3300026309	Soil	GKFHLKATVPTVKGARGVVAGKGETLYLIDPSEGRILKLIRK
Ga0209153_12938991	3300026312	Soil	DGKFRLKATVPTVKGARSVVAGKGETAYLIDPAQGRILKLIRK
Ga0209154_13196741	3300026317	Soil	AEVGDDGKFRLKATVPAAKGARSVVAGNDEKAYLIDPAQGRILKLIRK
Ga0209687_12438742	3300026322	Soil	GDDGKFHLKATAPTVKGARSVVAAGNETAYVIDPAEGKILKVSPK
Ga0209472_10380811	3300026323	Soil	LSIAEVGHAGKFHLKATLPTVKSARGVVAGSGDTAYLIDPAEGRILKVTRK
Ga0209472_11514042	3300026323	Soil	VGDDGKFHLKATVPTVKGARGVIAAKGEKAYLIDPAEGRILKLTPK
Ga0209470_10877251	3300026324	Soil	GDDGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0209470_10988371	3300026324	Soil	EVGDDGKFRLKATVPAVKGARSVVAGKGETAYLIDPAQGRILKLIRK
Ga0209801_10200223	3300026326	Soil	TIAEVDDHGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK
Ga0209801_13359881	3300026326	Soil	GKFHLKATVPTVKGARGVVAARGETAYFIDPAEGRIVKVIQK
Ga0209266_12365781	3300026327	Soil	GKFHLRATVPTVKGARGVVAGKSETAYLIDPTEGRILKLIRK
Ga0209473_11629971	3300026330	Soil	DGKFRLQSLVPTVKGARGVVAGKGETAYLIDPVEGRILKLKHK
Ga0209377_10848691	3300026334	Soil	KAIVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0209377_10851222	3300026334	Soil	RASVPTVKGARGVIAGKGETAYLIDPAEGRILKLTHK
Ga0209804_10575993	3300026335	Soil	DDGKFHLKATAPTVKGARSVVAAGNETAYVIDPAEGKILKVSPK
Ga0209057_12416112	3300026342	Soil	FHLKATVSTVKGARGVIAGKGETAYLIDPAEGRILKLTHK
Ga0209378_10754482	3300026528	Soil	MAEVGDDGKFHLKATVPAVKGARSVVAAKDETAYLINPAEGRMLKLMRK
Ga0209378_12597201	3300026528	Soil	DNHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLIRK
Ga0209806_12965701	3300026529	Soil	TIAEVDDRGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLRRK
Ga0209160_11868482	3300026532	Soil	DGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLTRK
Ga0209058_12177591	3300026536	Soil	DDYGKFHLKATVPTAKGARGVVAGKGETAYVIDPAEGRILKLIRK
Ga0209058_12183561	3300026536	Soil	RFHPKATVPTVKGARGVVAGKGGTAYIIDPAEGRIVKLTHK
Ga0209056_103720012	3300026538	Soil	NLTIAEVDDHGKFHLKATVPTVKGARGVVAGKGDTAYLIGPAEGRILKLIRK
Ga0209474_101478041	3300026550	Soil	VKATVPTVKGARGVVAGKGEAAYLIDPAEGRILKLIRK
Ga0209474_103789791	3300026550	Soil	IAKVGDDGKFHLKATVPTVKGARGVVAGKGETAYLIDPAEGRILKLMRK
Ga0209577_100665553	3300026552	Soil	LTTAEVGDDGKFHLKATAPTVKGARSVVAAGNETAYVIDPAEGKILKVSPK
Ga0179593_11679152	3300026555	Vadose Zone Soil	LKTTVPTVKGARGVVAGKGETAYLIDPAEARILKLTRK
Ga0208475_10010505	3300027018	Soil	LKATVPTVKGARGVVAAKGETAYLIDPAGGRILKLTHK
Ga0075386_116344841	3300030916	Soil	GKFHLKATVPTVKGARGVVAGSGDTAYLIDPAEGCILKVTRK
Ga0170823_136015411	3300031128	Forest Soil	IADVDDHGKFHLTATVPTVKGARGVIAAKGETAYLIDPAEGRILKLINK
Ga0170819_163316582	3300031469	Forest Soil	EVDDHGKFHLRATVPTVKGARGVVAGKGEAAYLIDPAEGRILKLTRK
Ga0306918_109014771	3300031744	Soil	VGDNGKFHLKATVPTAKGARGVVAGKGETAYLIDPAEGRILKLIHK
Ga0306919_110027372	3300031879	Soil	KFHLKDTVPTVKGARGVVTGKGETAYLIDPAEGRILKLIRK
Ga0306923_100501794	3300031910	Soil	DDGKFHLKALVPTVKGARGVVAGKGETAYLIDPAQGRILKLTHKSHDETKDK
Ga0310912_105825451	3300031941	Soil	IEVGNDGKFHLKALVPTVKGARGVVAGKGETAYLIDPAEGRILKLTHKSDDETKDR
Ga0310916_116362182	3300031942	Soil	VPTVKGARGVVAGKGETAYLIDPAQGRILKLTHKSHDETKDK
Ga0310913_104426472	3300031945	Soil	EVDDHGKFHLKATVPTVKGARGVVVGKGQTAYLIDPAEGRILKVTRK
Ga0306922_100523583	3300032001	Soil	ALVPTIKGARGVVAGKGETAYLIDPAQGRILKLTHKSHDETKDK
Ga0307471_1000463103	3300032180	Hardwood Forest Soil	VTIAEVDDHGKFHLRATVPTVKGARGVVAGKGETAYLIDPAEGRILKLILK
Ga0306920_1015470702	3300032261	Soil	EVGDAGKFHLKATVPTVKGARGVVAGSGDTAYLIDPAEGCILKVTRK
Ga0306920_1028592661	3300032261	Soil	DGKFHLKDTVPTVKGARGVVTGKGETAYLIDPAEGRILKLIRK
Ga0310914_109986332	3300033289	Soil	FHLKATVPTVKGARSVVAGKGETAYLIDPAEGRIMKLIHK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050277

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences