Metagenome / Metatranscriptome Family F050026

Basic Information
Family ID	F050026
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	43 residues
Representative Sequence	PDGEHAYLCCHDDAEVFEFELATGRITRTFPTAAGCEFIVAYH
Number of Associated Samples	133
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.34 %
% of genes near scaffold ends (potentially truncated)	34.25 %
% of genes from short scaffolds (< 2000 bps)	37.67 %
Associated GOLD sequencing projects	130
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Most Common Taxonomy
Group	Unclassified (71.918 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (10.274 % of family members)
Environment Ontology (ENVO)	Unclassified (20.548 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.836 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 28.17% Coil/Unstructured: 71.83%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF13460	NAD_binding_10	34.25
PF02245	Pur_DNA_glyco	22.60
PF01370	Epimerase	6.16
PF00009	GTP_EFTU	4.11
PF03401	TctC	2.05
PF05257	CHAP	2.05
PF04199	Cyclase	1.37
PF00920	ILVD_EDD	1.37
PF12697	Abhydrolase_6	0.68
PF00079	Serpin	0.68
PF01381	HTH_3	0.68
PF02265	S1-P1_nuclease	0.68
PF02777	Sod_Fe_C	0.68
PF13517	FG-GAP_3	0.68
PF00889	EF_TS	0.68
PF09084	NMT1	0.68
PF12794	MscS_TM	0.68
PF16881	LIAS_N	0.68
PF16658	RF3_C	0.68
PF00696	AA_kinase	0.68
PF10691	DUF2497	0.68
PF00571	CBS	0.68
PF12802	MarR_2	0.68
PF00149	Metallophos	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG2094	3-methyladenine DNA glycosylase Mpg	Replication, recombination and repair [L]	22.60
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	2.74
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.05
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	1.37
COG0264	Translation elongation factor EF-Ts	Translation, ribosomal structure and biogenesis [J]	0.68
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	0.68
COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.68
COG4521	ABC-type taurine transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.68
COG4826	Serine protease inhibitor	Posttranslational modification, protein turnover, chaperones [O]	0.68

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
All Organisms	root	All Organisms	28.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
cellular organisms	root	All Organisms → cellular organisms	28.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	13.01 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7.53 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.05 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.48 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	2.05 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Bruguierivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae	2.05 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	1.37 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.68 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Sodalis	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis	2.05 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	1.37 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Sodalis ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis → Sodalis ligni	2.05 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	1.37 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.92 %
Sodalis ligni	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis → Sodalis ligni	2.05 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1.37 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.68 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.68 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02GPPF5	Not Available	509	Open in IMG/M
3300005332\|Ga0066388_101403699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1213	Open in IMG/M
3300005354\|Ga0070675_101806797	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005541\|Ga0070733_11184479	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300005836\|Ga0074470_10295657	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300005938\|Ga0066795_10242643	All Organisms → cellular organisms → Bacteria	534	Open in IMG/M
3300006049\|Ga0075417_10614095	Not Available	554	Open in IMG/M
3300006578\|Ga0074059_11199503	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300006795\|Ga0075520_1424856	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300006871\|Ga0075434_102077192	All Organisms → cellular organisms → Bacteria → Proteobacteria	573	Open in IMG/M
3300006954\|Ga0079219_10707885	Not Available	767	Open in IMG/M
3300007004\|Ga0079218_12138432	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis → Sodalis ligni	647	Open in IMG/M
3300009090\|Ga0099827_10456098	Not Available	1096	Open in IMG/M
3300009649\|Ga0105855_1130852	Not Available	720	Open in IMG/M
3300009662\|Ga0105856_1289893	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300010042\|Ga0126314_10572152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis → Sodalis ligni	823	Open in IMG/M
3300010047\|Ga0126382_10423235	All Organisms → cellular organisms → Bacteria → Proteobacteria	1047	Open in IMG/M
3300010362\|Ga0126377_12890789	Not Available	554	Open in IMG/M
3300010362\|Ga0126377_13102310	All Organisms → cellular organisms → Bacteria → Proteobacteria	536	Open in IMG/M
3300010366\|Ga0126379_11564613	All Organisms → cellular organisms → Bacteria → Proteobacteria	765	Open in IMG/M
3300010376\|Ga0126381_104804388	Not Available	519	Open in IMG/M
3300010398\|Ga0126383_12695337	Not Available	580	Open in IMG/M
3300010399\|Ga0134127_11530714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Bruguierivoracaceae → Sodalis → Sodalis ligni	740	Open in IMG/M
3300013296\|Ga0157374_10889191	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300013307\|Ga0157372_12062875	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300013308\|Ga0157375_13762576	Not Available	504	Open in IMG/M
3300014162\|Ga0181538_10126620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1483	Open in IMG/M
3300015200\|Ga0173480_10028124	All Organisms → cellular organisms → Bacteria → Proteobacteria	2401	Open in IMG/M
3300015245\|Ga0137409_10706990	Not Available	842	Open in IMG/M
3300017975\|Ga0187782_11090792	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300018057\|Ga0187858_10774111	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300018060\|Ga0187765_10218408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1109	Open in IMG/M
3300018083\|Ga0184628_10248103	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300018465\|Ga0190269_11216015	Not Available	593	Open in IMG/M
3300018920\|Ga0190273_11404502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300025165\|Ga0209108_10121655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1393	Open in IMG/M
3300025885\|Ga0207653_10332277	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300025919\|Ga0207657_10858274	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300025941\|Ga0207711_10502896	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1130	Open in IMG/M
3300026854\|Ga0207727_103223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1756	Open in IMG/M
3300026990\|Ga0207824_1009248	Not Available	1094	Open in IMG/M
3300027039\|Ga0207855_1050690	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300027903\|Ga0209488_10574304	Not Available	820	Open in IMG/M
3300028710\|Ga0307322_10232063	Not Available	509	Open in IMG/M
3300028796\|Ga0307287_10276122	Not Available	636	Open in IMG/M
3300029999\|Ga0311339_11113319	All Organisms → cellular organisms → Bacteria	730	Open in IMG/M
3300030007\|Ga0311338_10686100	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300030013\|Ga0302178_10154017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1137	Open in IMG/M
3300030053\|Ga0302177_10276619	All Organisms → cellular organisms → Bacteria	901	Open in IMG/M
3300031521\|Ga0311364_11855176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	592	Open in IMG/M
3300031563\|Ga0307436_1013337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2723	Open in IMG/M
3300031699\|Ga0315535_1078255	All Organisms → cellular organisms → Bacteria	1261	Open in IMG/M
3300031910\|Ga0306923_11999254	Not Available	588	Open in IMG/M
3300032061\|Ga0315540_10028940	Not Available	2737	Open in IMG/M
3300032076\|Ga0306924_12299402	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300032782\|Ga0335082_10277232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1554	Open in IMG/M
3300032783\|Ga0335079_10615189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1144	Open in IMG/M
3300033829\|Ga0334854_155510	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	84.93%
Host-Associated	Host-Associated	15.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.49%
Aquatic	Environmental → Aquatic	15.75%
Plants	Host-Associated → Plants	14.38%
Unclassified	Environmental → Unclassified	0.68%
Fungi	Host-Associated → Fungi	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.96%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.33%
Freshwater	Environmental → Aquatic → Freshwater	10.27%
Peat	Environmental → Terrestrial → Peat	7.53%
Marine	Environmental → Aquatic → Marine	3.42%
Sediment	Environmental → Aquatic → Sediment	2.05%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.37%
Unclassified	Environmental → Unclassified → Unclassified	0.68%
Roots	Host-Associated → Plants → Roots	0.68%
Mycelium	Host-Associated → Fungi → Mycelium	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.78%
Loam	Environmental → Terrestrial → Soil → Loam	10.96%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	10.27%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.27%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.22%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	7.53%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	2.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.05%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.05%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.37%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.68%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.68%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.68%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.27%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.53%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	7.53%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	6.16%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.16%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.48%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.42%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.74%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	2.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.05%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.05%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.05%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.05%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.37%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.68%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.68%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.68%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.68%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	0.68%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.68%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.16%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	6.16%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.79%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.42%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.74%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	2.05%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	2.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.05%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.05%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.05%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.05%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.37%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.37%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.37%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	1.37%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.37%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.37%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.37%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.37%
Permafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil	1.37%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.37%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.37%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.68%
Mangrove Soil	Environmental → Aquatic → Marine → Oceanic → Sediment → Mangrove Soil	0.68%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	0.68%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.68%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.68%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	0.68%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.68%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.68%
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.68%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.68%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.68%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.68%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
3300000733	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80	Environmental	Open in IMG/M
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001402	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 deep-092012	Environmental	Open in IMG/M
3300002069	Barrow Graham LP Ref core NGADG0002-212 (Barrow Graham LP Ref core NGADG0002-212,NGADG0004-211, ASSEMBLY_DATE=20131010)	Environmental	Open in IMG/M
3300002822	Illumina_Fosmid_Bertioga	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005938	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 2 DNA2013-191	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006578	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006795	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-B	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009649	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-059	Environmental	Open in IMG/M
3300009662	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-060	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012081	Attine ant fungus gardens microbial communities from Florida, USA - TSFL087 MetaG	Host-Associated	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018023	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025165	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1	Environmental	Open in IMG/M
3300025324	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026464	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 7-17 CS5	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026860	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 70 (SPAdes)	Environmental	Open in IMG/M
3300026889	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 (SPAdes)	Environmental	Open in IMG/M
3300026990	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 73 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030053	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030706	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031563	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - WE1604-40	Environmental	Open in IMG/M
3300031699	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-20	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032061	Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-10	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033829	Peat soil microbial communities from Stordalen Mire, Sweden - 715 P2 1-5	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_01730890	2124908016		AHAFVCCHDDATVMEFELSTGRATREFKTASGCEFIISY
E4A_07285730	2170459003	Grass Soil	MGFGFAGDGKHAYLCCHDAAITLEFELASGKVTRQFPTAAGCEFVICY
JGI12408J11912_10015571	3300000733	Tropical Forest Soil	HVYLCCHDAAATLELELAGGHITGQFKTAAGCEFIVSY*
JGIcombinedJ13530_1000631122	3300001213	Wetland	DGRHAILCCHDAAVTLEFELASGRITRQFETAAGCEFVISY*
JGI20195J14853_10433742	3300001402	Arctic Peat Soil	AADGRHAFLCCHDDAMVLEFELASGRITRRFSTAAGCEFIIAYS*
JGIcombinedJ21912_101458971	3300002069	Arctic Peat Soil	CHDAAITLEFELDNGRVTRQFPTAAGCEFVISYS*
BMAI_10972881	3300002822	Mangrove Soil	FAAGGSLGYLCCHDAAVVLEFELATGRVQREFATAAGCEFIVSY*
Ga0062387_1009691192	3300004091	Bog Forest Soil	FAPDGQCAYLCCHDDAIVTEFELATGKTTRTFATDAGCEFIVAYH*
Ga0063455_1015377982	3300004153	Soil	FAAGGRHAFVCCHDAAIVTEFELSTGRVSREFPTASGCEFIIAYQ*
Ga0063356_1063860392	3300004463	Arabidopsis Thaliana Rhizosphere	DGKHAYLCCHDDGVVFEFELATGKVTRTFPTAAGCEFIVAYH*
Ga0062592_1009126631	3300004480	Soil	FAAGGKHAFVCCHDDATVMEFELSTGRATREFKTASGCEFIISY*
Ga0070690_1009963532	3300005330	Switchgrass Rhizosphere	ANGEHAYLCCHDAAITLEFELASGRITRQFSTAAGCEFIVSY*
Ga0066388_1013199273	3300005332	Tropical Forest Soil	GFAPGGTHAYVCCHDDAEVFEFELATGRVTRTFATAAGCEFIVAYH*
Ga0066388_1014036991	3300005332	Tropical Forest Soil	PMGFGFAADGKHAYLCCHDDAEVFEFELASGRVTRTFPTAAGCEFIVAYH*
Ga0070660_1010988772	3300005339	Corn Rhizosphere	GEHAYLCCHDAAITLEFELASGRITRQFPTAAGCEFIVSY*
Ga0070675_1018067972	3300005354	Miscanthus Rhizosphere	FAANGEHAYLCCHDAAITLEFELASGRITRQFSTAAGCEFIVSY*
Ga0070733_111844791	3300005541	Surface Soil	PMGFGFAPDGKLAYLCCHDDAIVFEFELASGRVTRTFPTADGCEFIVAYH*
Ga0070693_1001173763	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	GQRAYLCCHDAAVTLEFELASGRITRQFPTAAGCEFIFSY*
Ga0070764_106490742	3300005712	Soil	AYLCCHDDAVVFEFELKTGKVARTFPTEAGCEFIVAYQ*
Ga0066905_1021522441	3300005713	Tropical Forest Soil	YLCCHDDAEVFEFELATGRVVRTFPTAAGCEFIVGYSA*
Ga0074470_102956572	3300005836	Sediment (Intertidal)	FAADGKHAYLCCHDATTVLEFELASGRITRQFETAAGCEFIIAY*
Ga0066795_102426431	3300005938	Soil	AADGKHAFLCCHDAAITLEFEMSSGRITRQFPTAAGCEFIIAY*
Ga0075417_106140952	3300006049	Populus Rhizosphere	MGFGFAADGKHAYLCCHDDAVVFEFELASGRVTRTFPTAAGCEFIVAYA*
Ga0075364_100921603	3300006051	Populus Endosphere	VCCHDDNEVWEFELATGKVTRTFPTAAGCEFIVAYH*
Ga0074059_111995032	3300006578	Soil	FAADGKHAFLCCHDAAVVLEFDLGAARISREFQTAAGCEFIVSY*
Ga0074057_120085212	3300006605	Soil	GERAYLCCHDAAITLEFELASGRITRQFPTAAGCEFILSY*
Ga0075520_14248562	3300006795	Arctic Peat Soil	FAADGMHAYLCCHDAAITMEFELRNGRVTRQFPTAAGCEFIISYS*
Ga0075421_1000528386	3300006845	Populus Rhizosphere	CCHDDAEVFEFELATGRVTRTFPTAAGCEFIIAYQ*
Ga0075434_1020771921	3300006871	Populus Rhizosphere	FGFAGDGKHAWLCCHDDAEVFEFELASGRVTRTFPTAAGCEFILGYPA*
Ga0079219_107078851	3300006954	Agricultural Soil	PMGMGFAPGGTHAYVCCHDDAEVFGFELATGRVTRTFSTAAGCEFIVAYH*
Ga0079218_121384321	3300007004	Agricultural Soil	RKAPMGFGFAADGRHAFVCCHDDAIVIEFELSTGRATRSFPTAAGCEFIISY*
Ga0099827_104560982	3300009090	Vadose Zone Soil	MSTKKSPMGFGFAADRTHAYLCCHDDAVVFEFELATGRVRRTFPTAAGCEFVVAY*
Ga0105245_111084671	3300009098	Miscanthus Rhizosphere	HAFVCCHDDATVMEFELSTGRATREFKTASGCEFIISY*
Ga0075418_101512266	3300009100	Populus Rhizosphere	YLCCHDDAEVFEFELASGRVNRTFPTAAGCEFIVAYS*
Ga0075418_119272422	3300009100	Populus Rhizosphere	YICCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH*
Ga0075423_131063652	3300009162	Populus Rhizosphere	CCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH*
Ga0113563_120527472	3300009167	Freshwater Wetlands	YVCCHDAAITLEFELTSGRIARQFPTAAGCEFIIAY*
Ga0116126_10501293	3300009640	Peatland	LCCHDDAVVFEFELASGEITRTFPTAAGCEFIVAYH*
Ga0105855_11308522	3300009649	Permafrost Soil	GFGFAADGKHAYICCHDDAVVSEFELASGRITRNFTTAAGCEFIVAY*
Ga0105856_12898931	3300009662	Permafrost Soil	FAADNMHAYLCCHDAAITMEFELKNGRVTRQFPTAAGCEFIIAY*
Ga0126304_112673612	3300010037	Serpentine Soil	RAYLCCHDDAVVLEFELDSGRVTRQFPTASGCEFIISY*
Ga0126314_105721521	3300010042	Serpentine Soil	MGFGFAAGGRHAFVCCHDAAIVTEFELSTGRVSREFPTASGCEFIIAYQ*
Ga0126382_100770301	3300010047	Tropical Forest Soil	AYLCCHDDAEVFEFELATGRVVRTFPTAAGCEFIVGYSA*
Ga0126382_104232352	3300010047	Tropical Forest Soil	MGFGFGPDGTHAYLCCHDDAVVFELELSSGRVSRTFATASGCEFIIAY*
Ga0126382_115289211	3300010047	Tropical Forest Soil	AYICCHDDAEVFEFELATGRVNRTFPTAAGCEFIVGYSV*
Ga0126382_120884692	3300010047	Tropical Forest Soil	LCCHDDAEVFEFELATGRVARTFPTAAGCEFIVGYSA*
Ga0134070_104808171	3300010301	Grasslands Soil	GDGKYGYLCCHDDAVVFEFELANGCVTRTFPTASGCEFVVAYH*
Ga0126376_103468873	3300010359	Tropical Forest Soil	DGRHAYLCCHDDAEVFEFELATGRVVRTFPTAAGCEFIVGYSA*
Ga0126376_108829582	3300010359	Tropical Forest Soil	FAAGGTHAYLCCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH*
Ga0126372_112060531	3300010360	Tropical Forest Soil	DGKHAYLCCHDDAEVFEFELASGRVARTFPTAAGCEFIVAYH*
Ga0126377_102615831	3300010362	Tropical Forest Soil	CCHDDAEVFEFELASGRVTRTFATAAGCEFIVAYQ*
Ga0126377_128907891	3300010362	Tropical Forest Soil	GMGFAPGGTHAYLCCHDDAEVFEFELASGRVTRTFATAAGCEFIVAYQ*
Ga0126377_131023102	3300010362	Tropical Forest Soil	MGFGFGPDGAHAYLCCHDDAVVFELELSSGCVSRTFATGPGCEFIIAYQ*
Ga0126379_115646132	3300010366	Tropical Forest Soil	MGFGFGPDGAHAYLCCHDDAVVFELELESGCVSRTFATGPGCEFIIAYQ*
Ga0126381_1048043882	3300010376	Tropical Forest Soil	PMGFGFAADGRHAYLCCHDDAVVFEIELATGRVTREFPTAAGCEFVLAY*
Ga0126383_126953371	3300010398	Tropical Forest Soil	KKSPMGMGFAPGGTHAYVCCHDDAEVFEFELATGRVTRTFPTAAGCEFIIAYQ*
Ga0134127_115307141	3300010399	Terrestrial Soil	MGFGFAADGKHAFVCCHDAAIVTEFELSTGRVTREFPTASGCEFIIAY*
Ga0154003_10733072	3300012081	Attine Ant Fungus Gardens	CCHDDAVVTEFELASGRVTRDVSTAAGCEFIVAYH*
Ga0137404_111707801	3300012929	Vadose Zone Soil	GGTHAYVCCHDDAEVFEFELATGRVTRTFPTAAGCEFIIAYM*
Ga0126375_105138073	3300012948	Tropical Forest Soil	CCHDDAEVFEFELASGRVTRTFPTAAGCEFILGYPA*
Ga0153916_132162882	3300012964	Freshwater Wetlands	AADGRHAYLCCHDDAIVLEFELASGHVTREFATAAGCEFIVSY*
Ga0153916_132933202	3300012964	Freshwater Wetlands	KHAYLCCHDAAIALEIELSSGRITRQFETAAGCEFIISYS*
Ga0126369_127537972	3300012971	Tropical Forest Soil	GPDGAHAYLCCHDDAVVFELELASGCVSRTFATGPGCEFIIAYQ*
Ga0157374_108891912	3300013296	Miscanthus Rhizosphere	FGFAADGQRAYLCCHDAAVTLEFELASGRITRQFPTAAGCEFIFSY*
Ga0157372_120628752	3300013307	Corn Rhizosphere	FGFAAGGERAYLCCHDAAITLEFELASGRITRQFPTGAGCEFIVSY*
Ga0157375_137625761	3300013308	Miscanthus Rhizosphere	KSPMGFGFAPGGTHAYVCCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH*
Ga0181538_101266203	3300014162	Bog	GFAPDGEHAYLCCHDDAVVFEFELASGEITRRFPTAAGCEFIVAYH*
Ga0181535_100766234	3300014199	Bog	FAPDGKHAYLCCHDDAVVFEFALANGRIARTFPTAAGCEFIVAYH*
Ga0181537_105009492	3300014201	Bog	CHDDAVVYEFELATGHLTRTFETAAGCEFIVAYH*
Ga0157377_115763502	3300014745	Miscanthus Rhizosphere	HAFVCCHDDATVMEFELSTGRATREFRTASGCEFIISY*
Ga0173483_104734231	3300015077	Soil	GKHAFVCCHDDATVMEFELSTGRATREFKTASGCEFIISY*
Ga0173480_100281241	3300015200	Soil	PMGFGFAADGMHAFVCCHDDATVMEFELSTGRATREFKTASGCEFIISY*
Ga0137409_107069902	3300015245	Vadose Zone Soil	FGFAADGAHAFLCCHDDAEVCEFELASGRITRTFATAAGCEFMVAYQ*
Ga0182032_100301105	3300016357	Soil	HGYLCCHDAAVTLEFELAGGHITGQFKTAAGCEFIVSY
Ga0187782_110907921	3300017975	Tropical Peatland	GFGFAPDGRHAYLCCHDDAVVFEFDLASGQIARSFPTAAGCEFIVAYR
Ga0187889_104003212	3300018023	Peatland	AYLCCHDDAVVFEFELASGEITRTFPTAAGCEFIVAYH
Ga0187855_101686513	3300018038	Peatland	CCHDDAVVFEFDLSSGLVTRTFPTAAGCEFIVAYH
Ga0187871_103224551	3300018042	Peatland	APDGKHAYLCCHDDAVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0187858_107741111	3300018057	Peatland	KKSPMGFGFAPDGNHAYLCCHDDAVVFEFDLSSGLVTRTFPTAAGCEFIVAYH
Ga0187765_102184083	3300018060	Tropical Peatland	GPMGFGFAPDGEHAYLCCHDDAVVFEFELNSGRVTRTFPTEAGCEFIVAYH
Ga0184625_102531282	3300018081	Groundwater Sediment	ADGKHGYLCCHDDAEVFEFELASGRVNRAFPTAAGCEFIVAYH
Ga0184628_102481032	3300018083	Groundwater Sediment	PMGFGFAGDGKHAYLCCHDAAIILEFELASGRVTRQFETAAGCEFIIAY
Ga0187769_102679801	3300018086	Tropical Peatland	SAYLCCHDDAVVFEFELKTGKVKRTFPTDAGCEFIVAYH
Ga0190275_134749712	3300018432	Soil	CCHDDAVVLEFALATGRVMRQFTTASGCEYVIAYQEG
Ga0190275_135415731	3300018432	Soil	PGGTHAYVCCHDDAEVLEFELATGQVARTFSTAAGCEFIVAYH
Ga0190269_112160151	3300018465	Soil	KGPMGFGFAPDGRHAYLCCHDDAEVFEFELATGTVSRTFSTAAGCEFIVAYH
Ga0190273_114045021	3300018920	Soil	GFGFAPDGRHAYVCCHDDAEVWEFELATGKVTRTVPTAAGCEFIVAYQ
Ga0210391_110092531	3300021433	Soil	LCCHDDAIVTEFELATGKATRTFSTDAGCEFVVAYH
Ga0210398_101461144	3300021477	Soil	FAPDGKHAYLCCHDDGVVYEFELASGYLNRTFETAAGCEFIVAYH
Ga0209109_100561725	3300025160	Soil	GKHAFLCCHGDATVLEFELATGGITREFGTDKGCEFIISYQ
Ga0209108_101216553	3300025165	Soil	GFGFAADGKHAFLCCHGDATVLEFELESGRITREFGTDKGCEFIICYQ
Ga0209640_105284613	3300025324	Soil	FLCCHDDVVVLELELTTGRITREFATDKGCEFVIAYR
Ga0208820_11295522	3300025576	Peatland	LCCHDDAVVFEFELASGEITRTFPTAAGCEFIVAYH
Ga0207653_103322771	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	FAADGQRAYLCCHDAAVTLEFELASGRITRQFPTAAGCEFIFSY
Ga0207657_108582741	3300025919	Corn Rhizosphere	GFAADGEHAYLCCHDAAITLEFELASGRITRQFPTAAGCEFIVSY
Ga0207711_105028963	3300025941	Switchgrass Rhizosphere	PMGFGFAADGEHAYLCCHDAAITLEFELASGRITRQFPTAAGCEFIVSY
Ga0207711_112470122	3300025941	Switchgrass Rhizosphere	VCCHDDATVMEFELSTGRATREFKTASGCEFIISY
Ga0207689_108854561	3300025942	Miscanthus Rhizosphere	HAFVCCHDDAIVIEFELSTGRATRSFPTAAGCEFIISY
Ga0207712_114234051	3300025961	Switchgrass Rhizosphere	FAPDGKHAFLCCHDDAVVFEFELASGRVTRTFPTASGCEFIVAYH
Ga0256814_10302481	3300026464	Sediment	DRHAFLCCHDAAVMLEFELGSARITRQFPTAAGCEFVISY
Ga0207727_1032233	3300026854	Tropical Forest Soil	AADGRHAYLCCHDAAVMLEFELASGHITRQVETAAGCEFVLSY
Ga0207823_1002054	3300026860	Tropical Forest Soil	LCCHDAAATLELELAGGHITGQFKTAAGCEFIVSY
Ga0207745_100014113	3300026889	Tropical Forest Soil	LCCHDAAATLELELAGGHITRQFKTAAGCEFIVSY
Ga0207824_10092481	3300026990	Tropical Forest Soil	MGFCFDGHGQHGYLCCHDAAATLELELAGGHITGQFKTAAGCEFIVSY
Ga0207855_10506901	3300027039	Tropical Forest Soil	ANGRHAYLCCHDAAVMLEFELASGHITRQVETAAGCEFVLSY
Ga0208199_11070771	3300027497	Peatlands Soil	DGAHGYLCCHDDAVVFEFDLSSGLVTRTFPTAIGCEFIVAYH
Ga0209008_10963862	3300027545	Forest Soil	GFAPDGKHAYLCCHDDGVVYEFELASGYLNRTFETAAGCEFIVAYH
Ga0209039_102178642	3300027825	Bog Forest Soil	HAYLCCHDDAVVIEFELASGKAARTFPTAAGCEFIVAYH
Ga0209488_105743042	3300027903	Vadose Zone Soil	MGFGFAADGKHAYLCCHDDAEVFEFELASGRVTRTFPTAAGCEFIVAYH
Ga0209382_106192991	3300027909	Populus Rhizosphere	APDGKHAYVCCHDDAAVFEFELATGRVTREFATAAGCEFIVAYH
Ga0307295_102161141	3300028708	Soil	ADGKHAYLCCHDAAVTLEFDLANGKITRQFPTAAGCEFVISY
Ga0307322_102320631	3300028710	Soil	MGFGFAADGKHAYLCCHDDAEVFEFELAGGRVTRTFPTAAGCEFIVAYH
Ga0307504_104120342	3300028792	Soil	AKHAFLCCHDAAVTLEFDMASARITRQFPTAAGCEFVISY
Ga0307287_102761222	3300028796	Soil	SPMGMGFAPGGTHAYVCCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH
Ga0302226_104343061	3300028801	Palsa	GKHAYLCCHDDGVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0311339_111133191	3300029999	Palsa	KKSPMGFGFAPDGKHAYLCCHDDAVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0311338_106861002	3300030007	Palsa	KSPMGFGFAPDGKHAYLCCHDDGVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0302178_101540173	3300030013	Palsa	KSPMGFGFAPDGKHAYLCCHDDAVVYEFELATGHLSRTFETAAGCEFIVAYH
Ga0302177_102766192	3300030053	Palsa	MGFGFAPDGKHAYLCCHDDGVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0302177_104345841	3300030053	Palsa	PDGKHAYLCCHDDAVVYEFELATGHLSRTFETAAGCEFIVAYH
Ga0311356_114189992	3300030617	Palsa	HAYLCCHDDAVVYEFELATGHLSRTFETAAGCEFIVAYH
Ga0310039_103513302	3300030706	Peatlands Soil	PDGAHGYLCCHDDAVVFEFDLSSGLVTRTFPTAIGCEFIVAYH
Ga0302180_106001361	3300031028	Palsa	GGKHAYLCCHDDAVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0307500_100728641	3300031198	Soil	GGKHAYICCHDDAEVFEFELASGRVTRTFPTAAGCEFIVAYH
Ga0307506_102339802	3300031366	Soil	LCCHDAAVVLEFNLGAARITREFQTAAGCEFIVSY
Ga0311364_118551761	3300031521	Fen	GFGFAADNRHAYLCCHDEAVTLEFNLESGRVTRQFPTASGCEFVISY
Ga0302326_134081261	3300031525	Palsa	CCHDDAVVYEFELATGHLTRTFETAAGCEFIVAYH
Ga0307436_10133371	3300031563	Salt Marsh	NEHAYLCCHDAAVTLEFTLASGRVTRQFDTAPGCEFVISY
Ga0315535_10782551	3300031699	Salt Marsh Sediment	EHAFLCCHDAAVTLEFTLASGRVTRQFATAPGCEFVISY
Ga0318535_102186352	3300031764	Soil	LCCHDAAVTLEFELAGGHITGQFKTAAGCEFIVSY
Ga0310917_103947812	3300031833	Soil	GWHGYLCCHDAAVTLEFELAGGHITGQFKTAAGCEFIVSY
Ga0306923_119992541	3300031910	Soil	FAADGRHAYLCCHDAATTLEFDMTNGKITRQFPTAAGCEFVVSY
Ga0310912_102894793	3300031941	Soil	HAYLCCHDAATTLEFDMTNGKITRQFPTAAGCEFVVSY
Ga0310906_105366871	3300032013	Soil	RAYLCCHDDAVVLEFELDSGRVTRQFPTASGCEFIISY
Ga0310899_104089121	3300032017	Soil	LCCHDAAVTLEFELASGRITRQFPTAAGCEFIFSY
Ga0315540_100289401	3300032061	Salt Marsh Sediment	FGFAADNEHAFLCCHDAAVTLEFALASGRITRAFETAAGCEFVISY
Ga0308173_108413611	3300032074	Soil	AYLCCHDAAVMLEFELATGRITRQVETAAGCEFVLSY
Ga0306924_122994021	3300032076	Soil	GFAPDGEHAYLCCHDDAVVFEFELNSGRVTRTFPTEAGCEFIVAYH
Ga0310889_104190972	3300032179	Soil	VCCHDDAEVFEFELATGRVTRTFPTAAGCEFIVAYH
Ga0335085_103984713	3300032770	Soil	GQRAYLCCHDAATTLEFELARGRITRQFDTAAGCEFIISY
Ga0335082_102772323	3300032782	Soil	APMGFGFAPDGTHAYICCHDDAVVSEFELATGRVTREFPTAAGCEFIVAYH
Ga0335079_106151891	3300032783	Soil	KGPMGFGFAPDGKHAYLCCHDDAEVFEFALESGRVTRTFPTAAGCEFIVAYH
Ga0335080_113447201	3300032828	Soil	CCHDDAVVSEFELASGRITRNFTTAAGCEFIVAYH
Ga0335080_115660571	3300032828	Soil	PDGEHAYLCCHDDAEVFEFELATGRITRTFPTAAGCEFIVAYH
Ga0335076_116149481	3300032955	Soil	AYLCCHDDAIVTEFELATGAAARAFSTDTGCEFVVAYH
Ga0334854_155510_399_548	3300033829	Soil	MGFGFAPDGNHAYLCCHDDAVVFEFDLSSGLVTRTFPTAAGCEFIVAYH

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F050026

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign