Metagenome / Metatranscriptome Family F049477

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049477
Family Type	Metagenome / Metatranscriptome
Number of Sequences	146
Average Sequence Length	61 residues
Representative Sequence	MLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Number of Associated Samples	121
Number of Associated Scaffolds	146

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	16.44 %
% of genes near scaffold ends (potentially truncated)	84.93 %
% of genes from short scaffolds (< 2000 bps)	86.99 %
Associated GOLD sequencing projects	116
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.069 % of family members)
Environment Ontology (ENVO)	Unclassified (34.932 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.521 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.33% β-sheet: 33.33% Coil/Unstructured: 58.33%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 146 Family Scaffolds
PF07517	SecA_DEAD	85.62
PF16321	Ribosom_S30AE_C	4.79
PF02482	Ribosomal_S30AE	2.05
PF02687	FtsX	0.68
PF00773	RNB	0.68
PF07883	Cupin_2	0.68
PF03462	PCRF	0.68
PF01008	IF-2B	0.68
PF01050	MannoseP_isomer	0.68
PF00156	Pribosyltran	0.68

COG ID	Name	Functional Category	% Frequency in 146 Family Scaffolds
COG0653	Preprotein translocase subunit SecA (ATPase, RNA helicase)	Intracellular trafficking, secretion, and vesicular transport [U]	85.62
COG1544	Ribosome-associated translation inhibitor RaiA	Translation, ribosomal structure and biogenesis [J]	2.05
COG0182	5-methylthioribose/5-deoxyribulose 1-phosphate isomerase (methionine salvage pathway), a paralog of eIF-2B alpha subunit	Amino acid transport and metabolism [E]	0.68
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	0.68
COG0557	Exoribonuclease R	Transcription [K]	0.68
COG1184	Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family	Translation, ribosomal structure and biogenesis [J]	0.68
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	0.68
COG4776	Exoribonuclease II	Transcription [K]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	35.62 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	2.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.62 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	2.74 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.96 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2.74 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.74 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	2.05 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	1.37 %
Coriobacteriia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	2.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.74 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	2.74 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	2.05 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	1.37 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.37 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	1.37 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	0.68 %
Coriobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales	0.68 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.74 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2.05 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples	1.37 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples	1.37 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.37 %
Coriobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae	0.68 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.68 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.74 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	2.05 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	1.37 %
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	1.37 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1.37 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.68 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.68 %
Collinsella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.74 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.05 %
unclassified Microbacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium	1.37 %
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	1.37 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1.37 %
Bifidobacterium adolescentis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium adolescentis	0.68 %
Streptomyces viridosporus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus	0.68 %
Collinsella aerofaciens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2.74 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2.74 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.74 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.05 %
Microbacterium sp. C448	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. C448	1.37 %
uncultured Frankineae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	1.37 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1.37 %
Streptomyces viridosporus ATCC 14672	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus → Streptomyces viridosporus ATCC 14672	0.68 %
Collinsella aerofaciens ATCC 25986	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens → Collinsella aerofaciens ATCC 25986	0.68 %
Bifidobacterium adolescentis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium adolescentis	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000881\|JGI10215J12807_1421384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Coriobacteriia → Coriobacteriales → Coriobacteriaceae → Collinsella → Collinsella aerofaciens → Collinsella aerofaciens ATCC 25986	723	Open in IMG/M
3300000956\|JGI10216J12902_107324527	Not Available	552	Open in IMG/M
3300000956\|JGI10216J12902_114253461	Not Available	525	Open in IMG/M
3300001686\|C688J18823_10057517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2694	Open in IMG/M
3300001686\|C688J18823_10434589	Not Available	846	Open in IMG/M
3300003267\|soilL1_10015576	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5221	Open in IMG/M
3300004114\|Ga0062593_100288141	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1389	Open in IMG/M
3300004156\|Ga0062589_100136307	All Organisms → cellular organisms → Bacteria	1653	Open in IMG/M
3300004156\|Ga0062589_102759523	Not Available	512	Open in IMG/M
3300004157\|Ga0062590_100454688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1073	Open in IMG/M
3300004463\|Ga0063356_103431056	Not Available	683	Open in IMG/M
3300004463\|Ga0063356_105706933	Not Available	534	Open in IMG/M
3300004480\|Ga0062592_100556184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	963	Open in IMG/M
3300005172\|Ga0066683_10425219	Not Available	818	Open in IMG/M
3300005328\|Ga0070676_11141919	Not Available	590	Open in IMG/M
3300005333\|Ga0070677_10490472	Not Available	664	Open in IMG/M
3300005334\|Ga0068869_100136756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1888	Open in IMG/M
3300005336\|Ga0070680_100461969	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300005336\|Ga0070680_101256295	Not Available	641	Open in IMG/M
3300005337\|Ga0070682_100372795	Not Available	1071	Open in IMG/M
3300005338\|Ga0068868_100295726	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1374	Open in IMG/M
3300005339\|Ga0070660_101334006	Not Available	609	Open in IMG/M
3300005343\|Ga0070687_101357231	Not Available	530	Open in IMG/M
3300005347\|Ga0070668_100163475	All Organisms → cellular organisms → Bacteria	1808	Open in IMG/M
3300005354\|Ga0070675_102070720	Not Available	525	Open in IMG/M
3300005356\|Ga0070674_100191308	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1574	Open in IMG/M
3300005356\|Ga0070674_100843837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	794	Open in IMG/M
3300005366\|Ga0070659_101967596	Not Available	525	Open in IMG/M
3300005366\|Ga0070659_101990046	Not Available	522	Open in IMG/M
3300005445\|Ga0070708_101899947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → Bifidobacterium adolescentis	552	Open in IMG/M
3300005459\|Ga0068867_100103091	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300005459\|Ga0068867_101687886	Not Available	594	Open in IMG/M
3300005466\|Ga0070685_11083119	Not Available	605	Open in IMG/M
3300005545\|Ga0070695_101137659	Not Available	640	Open in IMG/M
3300005547\|Ga0070693_100119981	All Organisms → cellular organisms → Bacteria	1629	Open in IMG/M
3300005564\|Ga0070664_100732063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	922	Open in IMG/M
3300005564\|Ga0070664_102073181	Not Available	540	Open in IMG/M
3300005564\|Ga0070664_102203174	Not Available	523	Open in IMG/M
3300005713\|Ga0066905_100749165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	843	Open in IMG/M
3300005719\|Ga0068861_100912912	Not Available	832	Open in IMG/M
3300005841\|Ga0068863_101461184	Not Available	692	Open in IMG/M
3300005888\|Ga0075289_1053301	Not Available	638	Open in IMG/M
3300005937\|Ga0081455_10151846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1785	Open in IMG/M
3300005937\|Ga0081455_10422904	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. C448	918	Open in IMG/M
3300006844\|Ga0075428_100073416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3736	Open in IMG/M
3300006846\|Ga0075430_101096222	Not Available	656	Open in IMG/M
3300006881\|Ga0068865_100391002	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1137	Open in IMG/M
3300009156\|Ga0111538_13501250	Not Available	545	Open in IMG/M
3300009545\|Ga0105237_11812523	Not Available	618	Open in IMG/M
3300009545\|Ga0105237_11903891	Not Available	603	Open in IMG/M
3300009551\|Ga0105238_10949234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300009553\|Ga0105249_10522914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1234	Open in IMG/M
3300009789\|Ga0126307_10000387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	28437	Open in IMG/M
3300009837\|Ga0105058_1000128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	9366	Open in IMG/M
3300009840\|Ga0126313_10010666	All Organisms → cellular organisms → Bacteria	5783	Open in IMG/M
3300010038\|Ga0126315_10025966	All Organisms → cellular organisms → Bacteria	3004	Open in IMG/M
3300010038\|Ga0126315_10551900	Not Available	740	Open in IMG/M
3300010041\|Ga0126312_10021534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4309	Open in IMG/M
3300010041\|Ga0126312_10073280	All Organisms → cellular organisms → Bacteria	2309	Open in IMG/M
3300010042\|Ga0126314_10271685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1205	Open in IMG/M
3300010042\|Ga0126314_10315719	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1117	Open in IMG/M
3300010045\|Ga0126311_11784723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	521	Open in IMG/M
3300010045\|Ga0126311_11935890	Not Available	501	Open in IMG/M
3300010145\|Ga0126321_1388463	Not Available	740	Open in IMG/M
3300010371\|Ga0134125_12906538	Not Available	520	Open in IMG/M
3300010373\|Ga0134128_12484297	Not Available	571	Open in IMG/M
3300010375\|Ga0105239_13244625	Not Available	530	Open in IMG/M
3300011000\|Ga0138513_100013968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1042	Open in IMG/M
3300011000\|Ga0138513_100051518	All Organisms → cellular organisms → Bacteria	625	Open in IMG/M
3300012204\|Ga0137374_11038744	Not Available	589	Open in IMG/M
3300012902\|Ga0157291_10141210	Not Available	706	Open in IMG/M
3300012903\|Ga0157289_10286346	Not Available	577	Open in IMG/M
3300012907\|Ga0157283_10326175	Not Available	543	Open in IMG/M
3300012911\|Ga0157301_10009029	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus → Streptomyces viridosporus ATCC 14672	1943	Open in IMG/M
3300012913\|Ga0157298_10302776	Not Available	567	Open in IMG/M
3300012939\|Ga0162650_100081759	Not Available	559	Open in IMG/M
3300013100\|Ga0157373_10453150	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300014311\|Ga0075322_1157850	Not Available	561	Open in IMG/M
3300014969\|Ga0157376_12020338	Not Available	614	Open in IMG/M
3300015372\|Ga0132256_101502113	Not Available	784	Open in IMG/M
3300017792\|Ga0163161_10847782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300018027\|Ga0184605_10019805	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300018028\|Ga0184608_10426400	Not Available	573	Open in IMG/M
3300018031\|Ga0184634_10411236	Not Available	616	Open in IMG/M
3300018051\|Ga0184620_10189388	Not Available	680	Open in IMG/M
3300018054\|Ga0184621_10025931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1839	Open in IMG/M
3300018056\|Ga0184623_10291008	Not Available	740	Open in IMG/M
3300018061\|Ga0184619_10002532	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6605	Open in IMG/M
3300018072\|Ga0184635_10345281	Not Available	573	Open in IMG/M
3300018072\|Ga0184635_10397627	Not Available	522	Open in IMG/M
3300018466\|Ga0190268_10960215	Not Available	674	Open in IMG/M
3300019361\|Ga0173482_10262889	Not Available	741	Open in IMG/M
3300019362\|Ga0173479_10302215	Not Available	730	Open in IMG/M
3300019767\|Ga0190267_10176464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	970	Open in IMG/M
3300021073\|Ga0210378_10070294	All Organisms → cellular organisms → Bacteria	1373	Open in IMG/M
3300021078\|Ga0210381_10054054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300021080\|Ga0210382_10264440	Not Available	754	Open in IMG/M
3300021510\|Ga0222621_1065593	Not Available	764	Open in IMG/M
3300022756\|Ga0222622_10103826	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1753	Open in IMG/M
3300023071\|Ga0247752_1068796	Not Available	577	Open in IMG/M
3300025901\|Ga0207688_10005655	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	6797	Open in IMG/M
3300025904\|Ga0207647_10241523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1037	Open in IMG/M
3300025907\|Ga0207645_10918606	Not Available	594	Open in IMG/M
3300025912\|Ga0207707_10284669	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1431	Open in IMG/M
3300025917\|Ga0207660_10901086	Not Available	722	Open in IMG/M
3300025920\|Ga0207649_11466771	Not Available	540	Open in IMG/M
3300025923\|Ga0207681_10805754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → environmental samples → uncultured Frankineae bacterium	785	Open in IMG/M
3300025926\|Ga0207659_11421289	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → unclassified Microbacterium → Microbacterium sp. C448	594	Open in IMG/M
3300025942\|Ga0207689_10097144	All Organisms → cellular organisms → Bacteria	2419	Open in IMG/M
3300025944\|Ga0207661_11214737	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	694	Open in IMG/M
3300025944\|Ga0207661_11976909	Not Available	529	Open in IMG/M
3300025945\|Ga0207679_11887124	Not Available	545	Open in IMG/M
3300025981\|Ga0207640_10018840	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4064	Open in IMG/M
3300026041\|Ga0207639_12300100	Not Available	500	Open in IMG/M
3300026067\|Ga0207678_10891277	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300026078\|Ga0207702_11527417	Not Available	661	Open in IMG/M
3300026095\|Ga0207676_10520580	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1132	Open in IMG/M
3300027056\|Ga0209879_1002218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2743	Open in IMG/M
3300027876\|Ga0209974_10076744	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300028381\|Ga0268264_10681204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1020	Open in IMG/M
3300028597\|Ga0247820_10519058	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300028708\|Ga0307295_10056914	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1014	Open in IMG/M
3300028710\|Ga0307322_10080131	Not Available	824	Open in IMG/M
3300028796\|Ga0307287_10008518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3398	Open in IMG/M
3300028796\|Ga0307287_10009471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3240	Open in IMG/M
3300028796\|Ga0307287_10047289	Not Available	1574	Open in IMG/M
3300028814\|Ga0307302_10163262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1081	Open in IMG/M
3300028814\|Ga0307302_10540446	Not Available	579	Open in IMG/M
3300028819\|Ga0307296_10645663	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300028824\|Ga0307310_10405183	Not Available	677	Open in IMG/M
3300028876\|Ga0307286_10037387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1619	Open in IMG/M
3300028876\|Ga0307286_10076759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1156	Open in IMG/M
3300028889\|Ga0247827_11097395	Not Available	546	Open in IMG/M
3300031114\|Ga0308187_10118556	Not Available	845	Open in IMG/M
3300031562\|Ga0310886_10181518	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1134	Open in IMG/M
3300031731\|Ga0307405_10255395	All Organisms → cellular organisms → Bacteria	1306	Open in IMG/M
3300031892\|Ga0310893_10117040	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	999	Open in IMG/M
3300031903\|Ga0307407_10790292	Not Available	721	Open in IMG/M
3300031943\|Ga0310885_10365180	Not Available	761	Open in IMG/M
3300031944\|Ga0310884_10826801	Not Available	568	Open in IMG/M
3300031995\|Ga0307409_100138448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2093	Open in IMG/M
3300031995\|Ga0307409_100287944	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1522	Open in IMG/M
3300031995\|Ga0307409_100652956	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1046	Open in IMG/M
3300032002\|Ga0307416_100957253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	958	Open in IMG/M
3300032080\|Ga0326721_10250488	Not Available	963	Open in IMG/M
3300032122\|Ga0310895_10439380	Not Available	646	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.64%
Host-Associated	Host-Associated	38.36%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.37%
Plants	Host-Associated → Plants	38.36%
Aquatic	Environmental → Aquatic	10.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	49.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.38%
Sediment	Environmental → Aquatic → Sediment	7.53%
Freshwater	Environmental → Aquatic → Freshwater	2.74%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.05%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	36.30%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.38%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.96%
Loam	Environmental → Terrestrial → Soil → Loam	10.27%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.53%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.05%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.37%
Sand	Environmental → Terrestrial → Soil → Sand	1.37%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	23.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.01%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.96%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.22%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.53%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.79%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.74%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.05%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.05%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.37%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.37%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.37%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.07%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	6.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	6.16%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	6.16%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	4.79%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.11%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.05%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.05%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.05%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.05%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.05%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.37%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.37%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.37%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.37%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.37%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.37%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.37%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.68%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.68%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.68%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.68%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.68%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300003267	Sugarcane bulk soil Sample L1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005888	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009837	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012907	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S044-104R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012913	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S043-104R-2	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014311	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027876	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028796	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031892	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D2	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10215J12807_14213841	3300000881	Soil	EGSTWAVGAVRIEVVELPADIEGEELMLTVTQEGERALEVDGRPTVESIPALEEAVGGRFDAYFARATRLDNGLWEIGIDPL*
JGI10216J12902_1073245272	3300000956	Soil	GAVAIEVVELPADTEGDELMLTVTEEGERALEVDGRPVGVPPSELESAAGGRFDAYVMRASRLHGQLWEIGIDPL*
JGI10216J12902_1142534611	3300000956	Soil	ELTLTVTQEGERALEIDGRPSAEAIPALEQAVGDRYDAYFVRATRLDNELWEIGIDPL*
C688J18823_100575171	3300001686	Soil	DELMLTVTEEGETALEIDGRPSALPIPALEDVAGGRYDAYFLRATRLDERLWEIGLDPL*
C688J18823_104345891	3300001686	Soil	VAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRRLWEIGIDPL*
soilL1_100155762	3300003267	Sugarcane Root And Bulk Soil	MLTMTQEGERALEIDGRPTAEAIPALEEAVGGRYDAYFARATRLDRGLWEIGIDPL*
Ga0062593_1002881412	3300004114	Soil	VGAVGIEVVELPADTEGDELMLTVTQDGVRALEIDGRPAGELPSELEAASGGRYDAYVLRASRLDGPFWEIGLDPL*
Ga0062589_1001363071	3300004156	Soil	MWSVGAVSIEVAELPADTEGDELMLTVNQEGERVLEVDGQPAAALVPELDATAQGRYDAFFLRATRLDGRLWEIGIDPL*
Ga0062589_1027595232	3300004156	Soil	EVVELPADTEGDELMLTVTQDGVRALEIDGRPAGELPSELEAASGGRYDAYVLRASRLDGPFWEIGLDPL*
Ga0062590_1004546881	3300004157	Soil	MLTVNQEGERALEIDGRPTAALIPELEAAAQGRYDAFFLRATRLDARLWEIGIDPL*
Ga0063356_1034310561	3300004463	Arabidopsis Thaliana Rhizosphere	STWAVGAVRIEVAELPADIEGEELLLTVNQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLERGLWEIGIDPL*
Ga0063356_1057069331	3300004463	Arabidopsis Thaliana Rhizosphere	ELTLTVTQEGERALEIDGRPSAETIPALEQAVGDRYDAYFVRATRLDNELWEIGIDPL*
Ga0062592_1005561842	3300004480	Soil	VGAVGIEVVELPADTEGDELMLTVTQDGVRALEIDGRPAGELPSELEAASGGRFDAYVLRASRLDGPFWEIGLDPL*
Ga0066683_104252192	3300005172	Soil	GIEVIDLPADTEGEELTLTVNQEGERALEIDGEPGAETIPALEEAGGGRYDAYFVRASRLDGQVWEIEIDPL*
Ga0070676_111419191	3300005328	Miscanthus Rhizosphere	TQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL*
Ga0070677_104904722	3300005333	Miscanthus Rhizosphere	IEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLERGLWEIGIDPL*
Ga0068869_1001367561	3300005334	Miscanthus Rhizosphere	WAVGAVRIEVVELPADIDGEELMLTVTQEGELALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDQGLWEIGIDPL*
Ga0070680_1004619691	3300005336	Corn Rhizosphere	QEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0070680_1012562951	3300005336	Corn Rhizosphere	TVTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL*
Ga0070682_1003727951	3300005337	Corn Rhizosphere	TMTQEGERALEIDGRPTAEAIPALEEAVGGRYDAYFARATRLDRGLWEIGIDPL*
Ga0068868_1002957263	3300005338	Miscanthus Rhizosphere	VTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL*
Ga0070660_1013340061	3300005339	Corn Rhizosphere	TVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0070687_1013572312	3300005343	Switchgrass Rhizosphere	TVTQEGERALEVDGRPTAASIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0070668_1001634752	3300005347	Switchgrass Rhizosphere	MLTVTQEGERALEIDGRPTVEAIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0070675_1020707201	3300005354	Miscanthus Rhizosphere	EGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDGGLWEIGIDPL*
Ga0070674_1001913081	3300005356	Miscanthus Rhizosphere	RALEIDGRPTAESIPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0070674_1008438372	3300005356	Miscanthus Rhizosphere	LTVTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL*
Ga0070659_1019675962	3300005366	Corn Rhizosphere	EGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0070659_1019900462	3300005366	Corn Rhizosphere	RPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0070708_1018999472	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	LTVTQEGERALEIDGRPTVEAIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0068867_1001030914	3300005459	Miscanthus Rhizosphere	MLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0068867_1016878862	3300005459	Miscanthus Rhizosphere	EGERALEVDGRPTAASIPALEEAVGGRFDAYFARATRLDGGLWEIGIDPL*
Ga0070685_110831192	3300005466	Switchgrass Rhizosphere	EGERALEVDGRPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL*
Ga0070695_1011376591	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	IEVAELPADTEGSELLLTVTEEGERALEIDGRPTLEGIEPIERAAGGRYDAYVLRGTRLDERLWEIGIDPL*
Ga0070693_1001199813	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDNGLWEIGIDPL*
Ga0070664_1007320631	3300005564	Corn Rhizosphere	STWAVGAVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0070664_1020731812	3300005564	Corn Rhizosphere	ELMLTMTQEGERALEIDGRPTAEAIPALEEAVGGRYDAYFARATRLDRGLWEIGIDPL*
Ga0070664_1022031742	3300005564	Corn Rhizosphere	VRIEVAELPADIEGEELLLTVNQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLEKGLWEIGIDPL*
Ga0066905_1007491652	3300005713	Tropical Forest Soil	DGRATAETIPALEEVVGGRYDAYFARATRLDRGLWEIGIDPL*
Ga0068861_1009129122	3300005719	Switchgrass Rhizosphere	WAVGAVRIEVVELPADIEGEELMLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0068863_1014611842	3300005841	Switchgrass Rhizosphere	TVTQEGERALEIDGRPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL*
Ga0075289_10533012	3300005888	Rice Paddy Soil	RPTASLIPGLEEAAGGRFDAYFLRATRLDERLWEIGLDPL*
Ga0081455_101518461	3300005937	Tabebuia Heterophylla Rhizosphere	TAESIPALEEAVGGRYDAYFARATRLGRGLWEIGIDPL*
Ga0081455_104229041	3300005937	Tabebuia Heterophylla Rhizosphere	TWAIGGVRIEIAELPADIEGEELMLTMTQEGERALEIDGRPTAEAIPALEEAVGGRYDAYFARATRLDRGLWEIGIDPL*
Ga0075428_1000734164	3300006844	Populus Rhizosphere	LMLTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYFARATRLDRHLWEIGIDPL*
Ga0075430_1010962221	3300006846	Populus Rhizosphere	RIEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYFARATRLDRHLWEIGIDPL*
Ga0068865_1003910022	3300006881	Miscanthus Rhizosphere	EGEELMLTVTQEGERALEVDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL*
Ga0111538_135012501	3300009156	Populus Rhizosphere	GERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0105237_118125232	3300009545	Corn Rhizosphere	RALEIDGRPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL*
Ga0105237_119038912	3300009545	Corn Rhizosphere	WAVGAVRIEVVELPADIEGEELMLTVTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL*
Ga0105238_109492341	3300009551	Corn Rhizosphere	DTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0105249_105229141	3300009553	Switchgrass Rhizosphere	ALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDQGLWEIGIDPL*
Ga0126307_100003878	3300009789	Serpentine Soil	MLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYVARATRLDRQLWEIGIDPL*
Ga0105058_10001281	3300009837	Groundwater Sand	VTQEGERALEVDGRPTLEGIDALERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0126313_100106665	3300009840	Serpentine Soil	MWAVGAVAIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0126315_100259664	3300010038	Serpentine Soil	MWAVGAVAIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEVVERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0126315_105519001	3300010038	Serpentine Soil	LPADTEGDELMLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0126312_100215344	3300010041	Serpentine Soil	AIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0126312_100732803	3300010041	Serpentine Soil	MLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRQLWEIGIDPL*
Ga0126314_102716852	3300010042	Serpentine Soil	ADTQGEELMLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0126314_103157191	3300010042	Serpentine Soil	PTAESIPALEEAVGGRFDAYFARATRLDRQLWEIGIDPL*
Ga0126311_117847231	3300010045	Serpentine Soil	MLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRQ
Ga0126311_119358901	3300010045	Serpentine Soil	DGRPTAESIPALDEAVGGRFDAYFARVTRLDGGLWEIGIDPL*
Ga0126321_13884631	3300010145	Soil	ALEVDGRSTIEGIEALEQAVGGRYDAYVLRAERLDERLWEIGIDPL*
Ga0134125_129065382	3300010371	Terrestrial Soil	LPADIEGEELLLTMTQEGERALEIDGRPTAETIPALEAAVGGRYDAYFARATRLDRGLWEVGIDPL*
Ga0134128_124842972	3300010373	Terrestrial Soil	EIDGEPSPDANPALEEAAGARFDAYFVRASRLDGQLWEIEIDPL*
Ga0105239_132446252	3300010375	Corn Rhizosphere	IPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0138513_1000139682	3300011000	Soil	TQEGERALEIDGRPADVPVPGVDETAGGRYDAFVLRATRLEDRLWEIGLDPL*
Ga0138513_1000515182	3300011000	Soil	EVAELPADTEGDELLLTVTEEGERALEIDGRPTLEGIEPIERAAGGRYDAYVLRGTRLDGRLWEIGIDPL*
Ga0137374_110387441	3300012204	Vadose Zone Soil	ELPADTEGEELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0157291_101412101	3300012902	Soil	ALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0157289_102863461	3300012903	Soil	EGSTWAVGAVRIEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLERGLWEIGIDPL*
Ga0157283_103261751	3300012907	Soil	AVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL*
Ga0157301_100090292	3300012911	Soil	GRPTVESIPALEEAVGGRYDAYFARATRLDKGLWEIGIDPL*
Ga0157298_103027761	3300012913	Soil	GSTWAVGAVRIEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRRLWEIGIDPL*
Ga0162650_1000817592	3300012939	Soil	LMLTVTQEGERGMEVDGRPTLEGIETLERAAGDRYDAYVLRATRLDERLWEIGIDPL*
Ga0157373_104531501	3300013100	Corn Rhizosphere	TVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL*
Ga0075322_11578502	3300014311	Natural And Restored Wetlands	PEGERALEIDGRPTAESIPALEEAIGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0157376_120203381	3300014969	Miscanthus Rhizosphere	QEGERALEIDGRPTAESIPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL*
Ga0132256_1015021132	3300015372	Arabidopsis Rhizosphere	PADIEGEELMLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL*
Ga0163161_108477822	3300017792	Switchgrass Rhizosphere	MLTVTQEGERALEIDGRPTAASIPALEEAVGGRFDAYFARATRLDGGLWEIGIDPL
Ga0184605_100198052	3300018027	Groundwater Sediment	MWAVGAVAIEVAELSADTEGEELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDQRLWEIGIDPL
Ga0184608_104264001	3300018028	Groundwater Sediment	ERALEIDGRPTLEGIEPIERAAGGRYDAYVLRGTRLDDRLWEIGIDPL
Ga0184634_104112361	3300018031	Groundwater Sediment	RHEGSTWAVGAVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0184620_101893881	3300018051	Groundwater Sediment	ELPADTEGDELMLTVTQEGERALEIDGRPADVPVPGLDETAGGRYDAFVLRATRLEDRLWEIGLDPL
Ga0184621_100259313	3300018054	Groundwater Sediment	MWAVGAVAIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0184623_102910081	3300018056	Groundwater Sediment	AIEVAEFPADTEGEELMLTVTQEGERALEVDGRPTLEGIEALERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0184619_100025322	3300018061	Groundwater Sediment	MWAVGAVAIEVAELSADTEGEELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0184635_103452812	3300018072	Groundwater Sediment	AWAVGAVAIEVAELPADTEGDELLLTVTEEGERALEIDGRPTLVGIESIERAAGGRYDAYVLRGTRLDDRVWEIGIDPL
Ga0184635_103976271	3300018072	Groundwater Sediment	EGSTWAVGAVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0190268_109602152	3300018466	Soil	ALEIDGRPTAETIPALEDAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0173482_102628891	3300019361	Soil	ELLLTVNQEGERALEIDGRPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL
Ga0173479_103022151	3300019362	Soil	DIEGEELMLTMTQEGERALEIDGRPTAEAIPALEEAVGGRYDAYFARATRLDRGLWEIGIDPL
Ga0190267_101764642	3300019767	Soil	ADTEGEELMLTVTQEGERALEIDGRPTAESIPALEEAVGGRFDAYVARATRLDRGLWEIGIDPL
Ga0210378_100702941	3300021073	Groundwater Sediment	QEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0210381_100540541	3300021078	Groundwater Sediment	ERALEIDGRPTLVGIESIERAAGGRYDAYVLRGTRLDDRVWEIGIDPL
Ga0210382_102644401	3300021080	Groundwater Sediment	PADTEGDELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0222621_10655932	3300021510	Groundwater Sediment	GEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0222622_101038262	3300022756	Groundwater Sediment	GERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0247752_10687961	3300023071	Soil	EVVELPADIEGEELMLTVTQEGERALEVDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL
Ga0207688_100056552	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207647_102415232	3300025904	Corn Rhizosphere	VRIEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207645_109186062	3300025907	Miscanthus Rhizosphere	VTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL
Ga0207707_102846692	3300025912	Corn Rhizosphere	IEVVELPADIEGEELMLTVTQEGERALEVDGRPTVESIPALEEAVGGRFDAYFARATRLDNGLWEIGIDPL
Ga0207660_109010862	3300025917	Corn Rhizosphere	ELPADTKGDELTLTVTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL
Ga0207649_114667711	3300025920	Corn Rhizosphere	PADIEGEELLLTVNQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLEKGLWEIGIDPL
Ga0207681_108057542	3300025923	Switchgrass Rhizosphere	LSVTQEGERALEIDGRPTVEAIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207659_114212892	3300025926	Miscanthus Rhizosphere	EVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207689_100971442	3300025942	Miscanthus Rhizosphere	MLTVTQEGERALEIDGRPTAESIPALEAAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207661_112147371	3300025944	Corn Rhizosphere	RIEVVELPADIEGEELMLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL
Ga0207661_119769091	3300025944	Corn Rhizosphere	LEIDGRPTAESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207679_118871241	3300025945	Corn Rhizosphere	AGLPADIEGEELLLTVNQEGERALEIDGRPTAESIPALEDAVGGRFDAYFARATRLEKGLWEIGIDPL
Ga0207640_100188401	3300025981	Corn Rhizosphere	ELPADIEGEELMLTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0207639_123001001	3300026041	Corn Rhizosphere	ERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL
Ga0207678_108912771	3300026067	Corn Rhizosphere	RPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL
Ga0207702_115274171	3300026078	Corn Rhizosphere	VTQEGERALEVDGRPTAASIPALEEAVGGRFDAYFARATRLDRDLWEIGIDPL
Ga0207676_105205801	3300026095	Switchgrass Rhizosphere	ADTEGEELMLTVTQEGERALEIDGRPTAESIPALETAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0209879_10022182	3300027056	Groundwater Sand	EVAEFPADTEGEELMLTVTQEGERALEVDGRPTLEGIDALERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0209974_100767442	3300027876	Arabidopsis Thaliana Rhizosphere	VGAVRIEVVELPADIEGEELMLTVTQEGERALEVDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL
Ga0268264_106812041	3300028381	Switchgrass Rhizosphere	LPADTKGDELTLTVTQEGERALEIDGEPSPDANPALEEAAGARFDAYFVRASRLDGKLWEIEIDPL
Ga0247820_105190581	3300028597	Soil	LTVTQEGERALEIDGRPTVESIPALEEAVGGRFDAYFARATRLDQGLWEIGIDPL
Ga0307295_100569142	3300028708	Soil	MFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLETGLWE
Ga0307322_100801312	3300028710	Soil	TQDGERALEIDGRPTAVLAPALEEAAGGRFEAYVLRATRLDGRLWEIGLDPL
Ga0307287_100085183	3300028796	Soil	VAQLPADTEGDELMLTVTQEGERALEIDGRPADVPVPGLDETAGGRYDAFVLRATRLEDRLWEIGLDPL
Ga0307287_100094711	3300028796	Soil	GSTWAVGAVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0307287_100472891	3300028796	Soil	QELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRATRLDERLWEIGIDPL
Ga0307302_101632621	3300028814	Soil	GRPTLEGIEPIERAAGGRYDAYVLRGTRLDDRLWEIGIDPL
Ga0307302_105404462	3300028814	Soil	VGAVAIEVAELPADTEGEELMLTVTQEGERALEVDGRPTLEGIEAVERAAGDRYDAYVLRAMRLDERLWEIGIDPL
Ga0307296_106456632	3300028819	Soil	DTEGEELMLTVTQEGERALEVDGRPTLEGIEALERATGDRYHAYVLRATRLDGRLWEMGVDPL
Ga0307310_104051832	3300028824	Soil	EGERALEIDGRPADVPVPGLDETAGGRYDAFVLRATRLEDRLWEIGLDPL
Ga0307286_100373871	3300028876	Soil	AVGAVAIEVAELPADTEGDELLLTVTEEGERALEIDGRPTLVGIESIERAAGGRYDAYVLRGTRLDDRVWEIGIDPL
Ga0307286_100767592	3300028876	Soil	LEIDGRPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0247827_110973952	3300028889	Soil	LEIVGRPSAESIPALEEVVGGRFDAYVARATRLETGLWEIGIDPL
Ga0308187_101185562	3300031114	Soil	RPTAESIPALEEVVGGRFDAYVARATRLDTGLWEIGIDPL
Ga0310886_101815181	3300031562	Soil	TEGEELMLTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYFARATRLDRHLWEIGIDPL
Ga0307405_102553952	3300031731	Rhizosphere	MWAVGAVAIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEVVERAAGERYDAYVLRATRLDERLWEIGIDPL
Ga0310893_101170402	3300031892	Soil	GSTWAVGAVRIEVAELPADTEGEELMFTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYFARATRLDRHLWEIGIDPL
Ga0307407_107902922	3300031903	Rhizosphere	ELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEVVERAAGERYDAYVLRATRLDERLWEIGIDPL
Ga0310885_103651801	3300031943	Soil	STWAVGAVRIEVAELPADTEGEELMLTVTQEGERALEIDGRPAAESIPALEEVVGGRFDAYFARATRLDRHLWEIGIDPL
Ga0310884_108268012	3300031944	Soil	HEGSTWAVGAVRIEVAELPADTEGEELMLTVTQEGERALEIDGRPTAESIPALEEVVGGRFDAYVARATRLDRGLWEIGIDPL
Ga0307409_1001384481	3300031995	Rhizosphere	MLTVTQEGERALEVDGRPTLEGIEVVERAAGERYDAYVLRATRLDERLWEIGIDPL
Ga0307409_1002879441	3300031995	Rhizosphere	AESIPALEEAVGGRFDAYFARATRLDRGLWEIGIDPL
Ga0307409_1006529561	3300031995	Rhizosphere	MWAVGAVAIEVAELPADTEGDELMLTVTQEGERALEVDGRPTLEGIEVVERAAGDRYDAYVLRAMRLDERLWEIGIDPL
Ga0307416_1009572532	3300032002	Rhizosphere	NDWAVGAVAIEVAELPADTEGDELMLTATETGERALEVDGQPARAGIEALERIAGGRHDAYVLRATRINGTLWEIGVDPL
Ga0326721_102504882	3300032080	Soil	VTQEGERALEIDGRPTAESIPALEEVVGGRFDAYFARATRLDRRLWEIGIDPL
Ga0310895_104393802	3300032122	Soil	EIDGRPTVESIPALEEAVGGRFDAYFARATRLDKGLWEIGIDPL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049477

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences