Metagenome Family F049259

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F049259
Family Type	Metagenome
Number of Sequences	147
Average Sequence Length	64 residues
Representative Sequence	MTFSEDPLLHFRRRHLRNEVELVIGRSAVRVILALLTFALAAALALSGSAHGRDIVEIIRRLPPF
Number of Associated Samples	115
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	70.07 %
% of genes near scaffold ends (potentially truncated)	27.89 %
% of genes from short scaffolds (< 2000 bps)	84.35 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (80.952 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (19.728 % of family members)
Environment Ontology (ENVO)	Unclassified (36.054 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.823 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.91% β-sheet: 0.00% Coil/Unstructured: 44.09%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF12728	HTH_17	42.18
PF00534	Glycos_transf_1	24.49
PF09674	DUF2400	10.88
PF13439	Glyco_transf_4	6.80
PF01804	Penicil_amidase	2.72
PF00535	Glycos_transf_2	0.68
PF03795	YCII	0.68
PF01979	Amidohydro_1	0.68
PF00990	GGDEF	0.68
PF13524	Glyco_trans_1_2	0.68
PF00156	Pribosyltran	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG2366	Acyl-homoserine lactone (AHL) acylase PvdQ	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.72
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	80.95 %
Unclassified	root	N/A	19.05 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	55.78 %
Unclassified	root	N/A	19.05 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	42.86 %
Unclassified	root	N/A	19.05 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	2.04 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.86 %
Unclassified	root	N/A	19.05 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	2.04 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.86 %
Unclassified	root	N/A	19.05 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	2.04 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.86 %
Unclassified	root	N/A	19.05 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	2.04 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	42.86 %
Unclassified	root	N/A	19.05 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2.04 %
Rhodanobacter glycinis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter glycinis	0.68 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459009\|GA8DASG02I2EBK	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	513	Open in IMG/M
3300000956\|JGI10216J12902_111629568	All Organisms → cellular organisms → Bacteria	1262	Open in IMG/M
3300001305\|C688J14111_10056129	All Organisms → cellular organisms → Bacteria	1190	Open in IMG/M
3300001686\|C688J18823_10026910	All Organisms → cellular organisms → Bacteria	3913	Open in IMG/M
3300001686\|C688J18823_10248577	All Organisms → cellular organisms → Bacteria	1183	Open in IMG/M
3300002568\|C688J35102_120112488	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300004156\|Ga0062589_100020936	All Organisms → cellular organisms → Bacteria → Proteobacteria	3089	Open in IMG/M
3300004479\|Ga0062595_100181205	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300004633\|Ga0066395_10015170	All Organisms → cellular organisms → Bacteria → Proteobacteria	2952	Open in IMG/M
3300005093\|Ga0062594_100117736	All Organisms → cellular organisms → Bacteria	1643	Open in IMG/M
3300005171\|Ga0066677_10162132	All Organisms → cellular organisms → Bacteria	1231	Open in IMG/M
3300005293\|Ga0065715_10343388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300005338\|Ga0068868_101505409	All Organisms → cellular organisms → Bacteria → Acidobacteria	630	Open in IMG/M
3300005338\|Ga0068868_102187178	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300005339\|Ga0070660_101639927	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	547	Open in IMG/M
3300005343\|Ga0070687_100513653	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300005364\|Ga0070673_100028766	All Organisms → cellular organisms → Bacteria	4137	Open in IMG/M
3300005364\|Ga0070673_102192329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300005435\|Ga0070714_101559969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300005440\|Ga0070705_100211793	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300005440\|Ga0070705_100827761	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	739	Open in IMG/M
3300005445\|Ga0070708_100795197	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	889	Open in IMG/M
3300005445\|Ga0070708_100934377	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	814	Open in IMG/M
3300005445\|Ga0070708_101131586	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300005445\|Ga0070708_102165174	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300005451\|Ga0066681_10073026	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1919	Open in IMG/M
3300005468\|Ga0070707_100727260	Not Available	956	Open in IMG/M
3300005518\|Ga0070699_100091575	All Organisms → cellular organisms → Bacteria	2658	Open in IMG/M
3300005536\|Ga0070697_100730816	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005545\|Ga0070695_100185173	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300005545\|Ga0070695_101019469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	674	Open in IMG/M
3300005545\|Ga0070695_101623568	Not Available	540	Open in IMG/M
3300005546\|Ga0070696_100835255	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	760	Open in IMG/M
3300005549\|Ga0070704_101104416	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005569\|Ga0066705_10143951	All Organisms → cellular organisms → Bacteria	1459	Open in IMG/M
3300005713\|Ga0066905_100921102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	766	Open in IMG/M
3300005719\|Ga0068861_102043061	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300005764\|Ga0066903_100001299	All Organisms → cellular organisms → Bacteria	17968	Open in IMG/M
3300005764\|Ga0066903_100077160	All Organisms → cellular organisms → Bacteria	4317	Open in IMG/M
3300005841\|Ga0068863_101784791	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300006163\|Ga0070715_10202129	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300006237\|Ga0097621_102220504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300006755\|Ga0079222_10750376	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300006800\|Ga0066660_10487128	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300006854\|Ga0075425_100000469	All Organisms → cellular organisms → Bacteria	37952	Open in IMG/M
3300006854\|Ga0075425_100195145	All Organisms → cellular organisms → Bacteria	2326	Open in IMG/M
3300006854\|Ga0075425_102025630	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	643	Open in IMG/M
3300006871\|Ga0075434_100091961	All Organisms → cellular organisms → Bacteria	3035	Open in IMG/M
3300006903\|Ga0075426_11236598	Not Available	566	Open in IMG/M
3300006903\|Ga0075426_11236599	Not Available	566	Open in IMG/M
3300006914\|Ga0075436_100072364	All Organisms → cellular organisms → Bacteria	2385	Open in IMG/M
3300006914\|Ga0075436_100291371	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300007076\|Ga0075435_100289216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1400	Open in IMG/M
3300007255\|Ga0099791_10187114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	974	Open in IMG/M
3300009012\|Ga0066710_100583129	All Organisms → cellular organisms → Bacteria → Acidobacteria	1695	Open in IMG/M
3300009038\|Ga0099829_11546606	Not Available	547	Open in IMG/M
3300009089\|Ga0099828_10695873	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	913	Open in IMG/M
3300009090\|Ga0099827_10000709	All Organisms → cellular organisms → Bacteria	15898	Open in IMG/M
3300009098\|Ga0105245_12449887	Not Available	575	Open in IMG/M
3300009137\|Ga0066709_101165737	Not Available	1134	Open in IMG/M
3300009143\|Ga0099792_10473936	Not Available	779	Open in IMG/M
3300009176\|Ga0105242_10870660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	898	Open in IMG/M
3300010159\|Ga0099796_10356752	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300010159\|Ga0099796_10521418	Not Available	533	Open in IMG/M
3300010373\|Ga0134128_11550582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300010398\|Ga0126383_11024219	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	914	Open in IMG/M
3300010398\|Ga0126383_12300626	Not Available	625	Open in IMG/M
3300010401\|Ga0134121_10812138	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300010401\|Ga0134121_11263175	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300010401\|Ga0134121_13051921	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300011269\|Ga0137392_10368444	Not Available	1191	Open in IMG/M
3300011271\|Ga0137393_10289384	All Organisms → cellular organisms → Bacteria → Acidobacteria	1394	Open in IMG/M
3300012189\|Ga0137388_10688434	All Organisms → cellular organisms → Bacteria → Acidobacteria	949	Open in IMG/M
3300012189\|Ga0137388_10816066	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	864	Open in IMG/M
3300012200\|Ga0137382_10419708	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	944	Open in IMG/M
3300012200\|Ga0137382_11036181	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	588	Open in IMG/M
3300012203\|Ga0137399_10498735	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1021	Open in IMG/M
3300012203\|Ga0137399_11020780	Not Available	696	Open in IMG/M
3300012208\|Ga0137376_10075989	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2806	Open in IMG/M
3300012212\|Ga0150985_114979067	All Organisms → cellular organisms → Bacteria → Acidobacteria	1402	Open in IMG/M
3300012363\|Ga0137390_10504599	Not Available	1183	Open in IMG/M
3300012469\|Ga0150984_108157377	Not Available	691	Open in IMG/M
3300012683\|Ga0137398_11218170	Not Available	513	Open in IMG/M
3300012685\|Ga0137397_10526733	Not Available	880	Open in IMG/M
3300012685\|Ga0137397_10846834	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300012918\|Ga0137396_10112447	Not Available	1955	Open in IMG/M
3300012922\|Ga0137394_10201105	All Organisms → cellular organisms → Bacteria → Acidobacteria	1701	Open in IMG/M
3300012927\|Ga0137416_11042909	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	732	Open in IMG/M
3300012951\|Ga0164300_10572398	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300015245\|Ga0137409_10445577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → Rhodanobacter glycinis	1114	Open in IMG/M
3300015265\|Ga0182005_1089584	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	854	Open in IMG/M
3300018000\|Ga0184604_10096253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	910	Open in IMG/M
3300018027\|Ga0184605_10455027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300018028\|Ga0184608_10201155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	872	Open in IMG/M
3300018028\|Ga0184608_10246381	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300018066\|Ga0184617_1099330	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	811	Open in IMG/M
3300018075\|Ga0184632_10348911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	633	Open in IMG/M
3300018431\|Ga0066655_11428249	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300018433\|Ga0066667_11657853	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300020004\|Ga0193755_1199269	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	572	Open in IMG/M
3300021078\|Ga0210381_10008982	Not Available	2360	Open in IMG/M
3300021080\|Ga0210382_10007081	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	3696	Open in IMG/M
3300021080\|Ga0210382_10064049	Not Available	1476	Open in IMG/M
3300021344\|Ga0193719_10163605	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	957	Open in IMG/M
3300022756\|Ga0222622_10135121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1571	Open in IMG/M
3300025903\|Ga0207680_10120056	All Organisms → cellular organisms → Bacteria → Acidobacteria	1718	Open in IMG/M
3300025903\|Ga0207680_10343900	Not Available	1047	Open in IMG/M
3300025905\|Ga0207685_10417675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	691	Open in IMG/M
3300025907\|Ga0207645_10803996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	639	Open in IMG/M
3300025910\|Ga0207684_10457076	Not Available	1096	Open in IMG/M
3300025913\|Ga0207695_10317743	Not Available	1447	Open in IMG/M
3300025913\|Ga0207695_10593395	Not Available	989	Open in IMG/M
3300025918\|Ga0207662_10164086	All Organisms → cellular organisms → Bacteria → Acidobacteria	1421	Open in IMG/M
3300025922\|Ga0207646_10111410	All Organisms → cellular organisms → Bacteria → Acidobacteria	2456	Open in IMG/M
3300025922\|Ga0207646_11177620	Not Available	673	Open in IMG/M
3300025931\|Ga0207644_11142856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	654	Open in IMG/M
3300025939\|Ga0207665_10197241	Not Available	1465	Open in IMG/M
3300025960\|Ga0207651_12033215	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300025981\|Ga0207640_10077036	All Organisms → cellular organisms → Bacteria → Acidobacteria	2266	Open in IMG/M
3300026023\|Ga0207677_11340383	All Organisms → cellular organisms → Bacteria → Acidobacteria	658	Open in IMG/M
3300026301\|Ga0209238_1241474	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	536	Open in IMG/M
3300026542\|Ga0209805_1017755	All Organisms → cellular organisms → Bacteria	3756	Open in IMG/M
3300027655\|Ga0209388_1019422	All Organisms → cellular organisms → Bacteria → Acidobacteria	1893	Open in IMG/M
3300027669\|Ga0208981_1148661	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300027874\|Ga0209465_10017960	All Organisms → cellular organisms → Bacteria	3233	Open in IMG/M
3300027882\|Ga0209590_10181734	Not Available	1322	Open in IMG/M
3300027903\|Ga0209488_10025735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	4277	Open in IMG/M
3300027903\|Ga0209488_10187109	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1562	Open in IMG/M
3300028380\|Ga0268265_12142271	All Organisms → cellular organisms → Bacteria → Acidobacteria	566	Open in IMG/M
3300028536\|Ga0137415_11288781	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300028716\|Ga0307311_10074332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	928	Open in IMG/M
3300028717\|Ga0307298_10074500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	948	Open in IMG/M
3300028718\|Ga0307307_10116250	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300028784\|Ga0307282_10546758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	562	Open in IMG/M
3300028784\|Ga0307282_10660756	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	507	Open in IMG/M
3300028792\|Ga0307504_10248969	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	650	Open in IMG/M
3300028792\|Ga0307504_10454185	Not Available	514	Open in IMG/M
3300028824\|Ga0307310_10395712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	685	Open in IMG/M
3300028881\|Ga0307277_10321201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	688	Open in IMG/M
3300031720\|Ga0307469_10033559	All Organisms → cellular organisms → Bacteria	3017	Open in IMG/M
3300031720\|Ga0307469_11063511	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300031740\|Ga0307468_100865720	All Organisms → cellular organisms → Bacteria → Acidobacteria	779	Open in IMG/M
3300031820\|Ga0307473_10000645	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	8295	Open in IMG/M
3300031820\|Ga0307473_11431030	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300032421\|Ga0310812_10143064	Not Available	1012	Open in IMG/M
3300033412\|Ga0310810_10441901	All Organisms → cellular organisms → Bacteria → Acidobacteria	1322	Open in IMG/M
3300034817\|Ga0373948_0000442	All Organisms → cellular organisms → Bacteria	5140	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.87%
Host-Associated	Host-Associated	23.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.07%
Plants	Host-Associated → Plants	23.13%
Aquatic	Environmental → Aquatic	6.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.07%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.12%
Sediment	Environmental → Aquatic → Sediment	4.76%
Freshwater	Environmental → Aquatic → Freshwater	2.04%
Roots	Host-Associated → Plants → Roots	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.94%
Loam	Environmental → Terrestrial → Soil → Loam	23.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.76%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.76%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.36%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	15.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.52%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	6.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.76%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.08%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.40%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.40%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.36%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.68%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	19.73%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	13.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.12%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.08%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.40%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.40%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.40%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.40%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.04%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.36%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.36%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.36%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.68%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.68%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.68%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459009	Grass soil microbial communities from Rothamsted Park, UK - July 2009 indirect DNA Tissue lysis 0-10cm	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001305	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005171	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126	Environmental	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006800	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015265	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG	Host-Associated	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300020004	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027669	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028718	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F47_07165670	2170459009	Grass Soil	MIHSDNPLVHFRRRRPRHEVELVIGRSAVRVILVLVTLALAAALALTGSEHARAFISSIARLPF
JGI10216J12902_1116295682	3300000956	Soil	MTRSEDPLLHFRRRHVRDEVELVIGRSAVRVILALLTFALGAALALSGQARGRDIVEIIRRLPSF*
C688J14111_100561293	3300001305	Soil	MIHSENPLVHFRRRRSRNEVELVIGRSAVRIILALLTVALGIALALTGSGHAHDVFE
C688J18823_100269104	3300001686	Soil	MPRTRAGVATMIHSENPLVHFRRRRSRNEVELVIGRSAVRIILALLTVALGIALALTGSGHAHDVFEAIRRLPPF*
C688J18823_102485773	3300001686	Soil	MRAGVPEMIRSDNPLLHVRRRHLRDETEVVIGRSAARVILGVVTLALAIALALSGSGHAKDIIELIRQL
C688J35102_1201124881	3300002568	Soil	MRAGVPEMIRSDNPLLHVRRRHLRDETEVVIGRSAARVILGVVTLALAIALALSGSEHAKDIIELIRRLPRL*
Ga0062589_1000209364	3300004156	Soil	MTRSEDPLLHFRRRQPRDEVELVVGRSAVRVILALLTVALAAALALSGSAHGRDIVEIIRRLPTF*
Ga0062595_1001812053	3300004479	Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHAHDVLEVIRRLPSF*
Ga0066395_100151703	3300004633	Tropical Forest Soil	MIHSDNPLVHFRRRRSHNEVELVIGRSAVRVILAVITLALAAALALTGSEHARAFVSSIGRLPF*
Ga0062594_1001177362	3300005093	Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF*
Ga0066677_101621322	3300005171	Soil	MIRSDDPLVYFRRRRLRDEMELAIGRSAVRVILALIALALGAALTLSGSAHARDIADALRWLPKF*
Ga0065715_103433882	3300005293	Miscanthus Rhizosphere	MTGNWAMTRNQDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGRDIVEIIRRLPSF*
Ga0068868_1015054092	3300005338	Miscanthus Rhizosphere	PLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF*
Ga0068868_1021871782	3300005338	Miscanthus Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTAALGTALAFTGSGHAHDVLEMIRRLPSF*
Ga0070660_1016399272	3300005339	Corn Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVL
Ga0070687_1005136531	3300005343	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIR
Ga0070673_1000287661	3300005364	Switchgrass Rhizosphere	MTRNQDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGHDIVELIRRLPSF*
Ga0070673_1021923291	3300005364	Switchgrass Rhizosphere	MTRSEDPLLHFRRRQPRDEVELVVGRSAVRVILALLTVALAAALALSGSAHGRDIV
Ga0070714_1015599692	3300005435	Agricultural Soil	MIRSDDPLVHFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARA
Ga0070705_1002117932	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTFSDDPLLHFRYRHLRNEIELVIGRSAVRVILALLTIALAAALALSGSAHGRDIVEIIRRLPPF*
Ga0070705_1008277611	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MTRNDDPLLHFRLRHLRDEVEVVIGRSAVRLILALLSFALAAALALSGATQGRDIVEIIR
Ga0070708_1007951972	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTRNDDPLLHFRLRHLRDEVEVVIGRSAVRLILALLSFALAAALALSGATQGRDIVEIIRRLPSF*
Ga0070708_1009343773	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIHSENPLLHFRCRHLRDEVELVIGRSAVRVILALITLALGAALALSGSEHARAVTDVIRRLPAF*
Ga0070708_1011315862	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSDDPLVYFRRRHLRDEVELAIGRSAVRVILALITLALGAALALSGSAHARDLADVLRWLPTF*
Ga0070708_1021651742	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSEDPLLHFRFRHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIAEIIRRLPQF*
Ga0066681_100730263	3300005451	Soil	MIRNNDPLVYFRRRHLRDEIELAIGRSAVRVILAVITLALAAALAWSGDGTAHAVTNALRWLPAF*
Ga0070707_1007272601	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSNDPLLHFRCRHLRDEVELVIGRSAVRVLLALLSFALAAALALSGSARARDIADVLRRLPSF*
Ga0070699_1000915752	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MLRARAGVPGMIRSDDPLVYFRRRHLRDEVELAIGRSAVRVILALITLALGAALALSGSAHARDLADVLRWLPTF*
Ga0070697_1007308162	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPRTRAGGPEMIRSDDPLVYFRRRRVRDEVELAIGRSAVRVILALITLALGAALALSGSTHARDLVDALRALPTFP*
Ga0070695_1001851732	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MPRTRAGVPEMIRSDDPLVYFRRRRVRDEVELAIGRSAVRVILALITLALGAALALSGSTHARDLVDALRALPTFP*
Ga0070695_1010194692	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	GVPGMIRSNDPLVHFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARALADLLRRLPAF*
Ga0070695_1016235681	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MTFSDDPLLHFRYRHLRNEIELVIGRSAVRVILALLTIALAAAIALSGSAHGRDIVEIIRRLPPF*
Ga0070696_1008352553	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLP
Ga0070704_1011044162	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSNDPLVHFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARALADLLRRLPAF*
Ga0066705_101439513	3300005569	Soil	MTRNNDPLVYFRRRHLRDEIELAIGRSAVRVILAVITLALAAALAWSGDGTAHAVTNALRWLPKF*
Ga0066905_1009211022	3300005713	Tropical Forest Soil	MIHSNNPLVHFRRRRPRNETELVIGRSAVRVILAVITLALAAALALTGSEHARDALDAIRRLPF*
Ga0068861_1020430612	3300005719	Switchgrass Rhizosphere	MVRNENPLLHFRCRRVRNEVELVIGRSAVRVILALLAFALGVALALTGAENAKATVDLIRRLPSF*
Ga0066903_1000012999	3300005764	Tropical Forest Soil	MIHSENPLVHFRRRHLRNEVEVVIGRSAVRVILALITLALGAALALSGSGHAKEVIDVIRRLPAF*
Ga0066903_1000771603	3300005764	Tropical Forest Soil	MIRSENPLVHFRRRHLRDEVEVVIGRSAARVILALAALALGAALALSGSGHAKEVMDLIRRLPAF*
Ga0068863_1017847911	3300005841	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTAALGTALAFTGSGHAHDVLEMIRRLP
Ga0070715_102021293	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MRAGVPGMMIRSDNPLVHFRRRRPRHEIELVIGRSAVRVILALITLALAAALALTGSEHARAFVSSIGRLPF*
Ga0097621_1022205042	3300006237	Miscanthus Rhizosphere	MRAGVATMIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHAHDVIEMIRRLPPF*
Ga0079222_107503762	3300006755	Agricultural Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTGALGTALALTGSGHAHDVIEMIRRLPPF*
Ga0066660_104871281	3300006800	Soil	MIHSENPLVHFRRRRSHNEVELVIGRSAVRVIVALITLALAAALALSGSTHARDVIEAIR
Ga0075425_10000046934	3300006854	Populus Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVVLGTALALTGSSHAHDVLEMIRRLPPF*
Ga0075425_1001951453	3300006854	Populus Rhizosphere	MIRSNDPLVHFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARALADLLRWLPAF*
Ga0075425_1020256301	3300006854	Populus Rhizosphere	MIRSDDPLVYFRRRRVRDEVELAIGRSAVRVILALITLALGAALALSGSTHARDLVDALRALPTFP*
Ga0075434_1000919614	3300006871	Populus Rhizosphere	MPRTRAGVPGMIRSDDPLVYFRRRRVRDEVELAIGRSAVRVILALITLALGAALALSGSTHARDLVDALRALPTFP*
Ga0075426_112365981	3300006903	Populus Rhizosphere	HFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARALADLLRWLPAF*
Ga0075426_112365991	3300006903	Populus Rhizosphere	HFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARVLADLLRWLPAF*
Ga0075436_1000723644	3300006914	Populus Rhizosphere	MIRSNDPLVHFRRRHVRDEVELVIGRSAARVILALITLALGAALALSGSAHARVLADLLRWLPAF*
Ga0075436_1002913713	3300006914	Populus Rhizosphere	MIRSDDPLVYFRRRRVRDEVELAIGRSAVRVILALITLALGAALALSGSTHARDLVDA
Ga0075435_1002892161	3300007076	Populus Rhizosphere	SKRRAPGSRRRGRRLPTRAGVVTMIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF*
Ga0099791_101871142	3300007255	Vadose Zone Soil	MTRSDDPLLHFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGKTYARDVADILRRLPF*
Ga0066710_1005831291	3300009012	Grasslands Soil	MVGNRVMTRSEDPLLHFRCRHLRDEVELVIGKSAVRVILALLTFALGVALALSGTGHGRDVVEIIRRLPSF
Ga0099829_115466062	3300009038	Vadose Zone Soil	LRDEVELEIGTSAARVILGLLTFALAAALMLSGSAHGRDIVEIIRRLPPF*
Ga0099828_106958731	3300009089	Vadose Zone Soil	LRDEVELEIGTSAARVILGLLTFALAAALVLSGSAHGRDIVEIIRRLPS
Ga0099827_1000070916	3300009090	Vadose Zone Soil	MTRSEDPLLHFRFKHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIAEIIRRLPQF*
Ga0105245_124498872	3300009098	Miscanthus Rhizosphere	DEVELVIGRSAVRVILALLTFALAGALALSGSANGRDIVEIIRRLPSF*
Ga0066709_1011657371	3300009137	Grasslands Soil	MVGNRVMTRSEDPLLHFRCRHLRDEVELVIGKSAVRVILALLTFALGVALALSGTGHGRDVVEIIRRLPSF*
Ga0099792_104739362	3300009143	Vadose Zone Soil	MTRSEDPLLHFRCRHVRDEVELVIGRSAVRVILALLTFALGAALALSGSARGRDIVEIIRRLPTF*
Ga0105242_108706602	3300009176	Miscanthus Rhizosphere	MTRSEDPLLHFRRRQPRDEVELVVGRSAVRVILALLTVALAAALALSGSAHGRDILEIIRRLPTF*
Ga0099796_103567521	3300010159	Vadose Zone Soil	MTRNDDPLLRFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPAF
Ga0099796_105214181	3300010159	Vadose Zone Soil	YRHLRDEVEVVIGRSAVRVILALLTLALTAALASSDHAHARDLVDLIRRLPPFR*
Ga0134128_115505823	3300010373	Terrestrial Soil	MIHSENPLLHFRRRRSRNEVELVIGRSVVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF*
Ga0126383_110242191	3300010398	Tropical Forest Soil	MIHSNNPLVHFRRRRPRNETELVIGRSAVRVILAVITLALAAALALTGSEHARAFVSSIGRLPF*
Ga0126383_123006261	3300010398	Tropical Forest Soil	PRPRAGITGMIRSENPLVHFRRRHLRDEVEVVIGRSAARVILALAALALGAALALSGSGHAKEVMDLIRRLPAF*
Ga0134121_108121382	3300010401	Terrestrial Soil	MTRSEDPLLHFRRRRLRDEVELVVGRSAVRVILALLTVALAAALALSGSAHGRDIVEIIRRLPTF*
Ga0134121_112631751	3300010401	Terrestrial Soil	MIHSENPLVHFRRRRARNEVELVIGRSAVRIILALLTAALGTALALTGSGHAHDVIAMIRRLPPF*
Ga0134121_130519212	3300010401	Terrestrial Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRVILAVITLALAAALALNGSEHARDVIEAIRHLPTF*
Ga0137392_103684444	3300011269	Vadose Zone Soil	LRDEVELEIGTSAARVILGLLTFALAAALVLSGSAHGRDIVEIIRRLPSF*
Ga0137393_102893841	3300011271	Vadose Zone Soil	LRDEVELEIGTSAARVILGLLTFALAAALMLSGSAHGRDIVEIIRRLPSF*
Ga0137388_106884341	3300012189	Vadose Zone Soil	MTRSENPLLHFRCRHLRDEVELVIGRSAVRVILALLSLAIAAALALSGSDHARTFLDILG
Ga0137388_108160663	3300012189	Vadose Zone Soil	MARKDSLLHFRWRHLRDEVELEIGTSAARVILGLLTFALAAALVLSGSAHGRDIVEIIRRLPSF*
Ga0137382_104197081	3300012200	Vadose Zone Soil	RDEVELVIGRSAVRVILALLTFALAAALALSGSANGRDIVEMIRRLPSF*
Ga0137382_110361812	3300012200	Vadose Zone Soil	RRHLRDEVELVIGRSAVSVILALLTFALAAALALTGAANGRDIVEMIRRLPSF*
Ga0137399_104987352	3300012203	Vadose Zone Soil	MTRNDDPLLRFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGKTYARDVADILRRLPF*
Ga0137399_110207801	3300012203	Vadose Zone Soil	EDPLLHFRFRHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIAEIIRRLPQF*
Ga0137376_100759892	3300012208	Vadose Zone Soil	MTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAAALALTGAANGRDIVEMIRRLPSF*
Ga0150985_1149790672	3300012212	Avena Fatua Rhizosphere	MIRSDNPLLHVRRRHMRDETEVVIGRSAARVILGVVTLALAIALALSGSGHAKDIIELIRQLPRL*
Ga0137390_105045992	3300012363	Vadose Zone Soil	MTRSENPLLHFRCRHLRDEVELVIGRSAVRVILALLSLAIAAALALSGSAHARAFLDVLGRLPSF*
Ga0150984_1081573771	3300012469	Avena Fatua Rhizosphere	MIRSDNPLLHVRRRHLRDETEVVIGRSAARVILGVITLALAIALALSGSEHAKDIVELIRRLPRL*
Ga0137398_112181702	3300012683	Vadose Zone Soil	FRCRHLRDEMELVIGRSAVRVILALLTFALGAALALTGSARGRDIVEIIRRLPTF*
Ga0137397_105267331	3300012685	Vadose Zone Soil	TRRTTVGNRAMTRSDNPLLHFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGKTYARDVADILRRLPF*
Ga0137397_108468341	3300012685	Vadose Zone Soil	MTRNDDPLLRFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPSF*
Ga0137396_101124474	3300012918	Vadose Zone Soil	MTRSEDPLLHFRFRHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIVEIIRRLPQF*
Ga0137394_102011052	3300012922	Vadose Zone Soil	MTRNDDPLLRFRRRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPSF*
Ga0137416_110429092	3300012927	Vadose Zone Soil	MTRNDDPLLRFRRRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPAF*
Ga0164300_105723982	3300012951	Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHAHEVLEVIRRLPSF*
Ga0137409_104455771	3300015245	Vadose Zone Soil	FRCRHLRDDVELVIGKSAVRVILALLTFALAAALALSGSVHGRDVVEIFRRLAPFW*
Ga0182005_10895841	3300015265	Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHARDVLEMIRRLPPF*
Ga0184604_100962532	3300018000	Groundwater Sediment	MTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAGSTNGRDIVEIIRRLPSF
Ga0184605_104550272	3300018027	Groundwater Sediment	MTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEMIRRLPQF
Ga0184608_102011552	3300018028	Groundwater Sediment	MTFSEDPLLHFRRRHLRNEVELVIGRSAVRVILALLTFALAAALALSGSAHGRDIVEIIRRLPPF
Ga0184608_102463812	3300018028	Groundwater Sediment	MVGNWAMTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGRDIVEIIRRLPSF
Ga0184617_10993301	3300018066	Groundwater Sediment	MTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAGALALSGSANGRDIVEIIRRLPSF
Ga0184632_103489112	3300018075	Groundwater Sediment	MTFSEDPLLHFRRRHLRNEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEIIRRLPPF
Ga0066655_114282492	3300018431	Grasslands Soil	MTRNNDPLVYFRRRHLRDEIELAIGRSAVRVILAVITLALAAALAWSGDGTAHAVTNALRWLPKF
Ga0066667_116578532	3300018433	Grasslands Soil	VGNRAMTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAAALGLSGSDHGRDIVEIIRRLPSF
Ga0193755_11992691	3300020004	Soil	MTGNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAAALALSGSATGRDIVEMIRRLPSF
Ga0210381_100089822	3300021078	Groundwater Sediment	MVGNWAMTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAGALALSGSANGRDIVEIIRRLPSF
Ga0210382_100070813	3300021080	Groundwater Sediment	MTSNEDPLLHFRYRHLRNEVELIIGRSAVRVILALLTLALATALALSGSAHGRDIVEIVRRLPPF
Ga0210382_100640492	3300021080	Groundwater Sediment	MTRNDDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAGALALSGSANGRDIVEIIRRLPSF
Ga0193719_101636052	3300021344	Soil	MTRSEDPLLRFRCRHLRDDMELVIGQSAVRVILAVLTFALAAALVLSGSAQGRDIVEIIRRLPSF
Ga0222622_101351212	3300022756	Groundwater Sediment	MTRNEDPLLHFRRRHLRDEVEVVIGRSAVRVILALLTFALAGALALSGSANGRDIVEIIRRLPSF
Ga0207680_101200561	3300025903	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEIIRRLPPF
Ga0207680_103439002	3300025903	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTAALGTALAFTGSGHAHDVLEMIRRLPSF
Ga0207685_104176751	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MRAGVPGMMIRSDNPLVHFRRRRPRHEIELVIGRSAVRVILALITLALAAALALTGSEHARAFVSSIGRLPFCPGGMSS
Ga0207645_108039962	3300025907	Miscanthus Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF
Ga0207684_104570762	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTRSDNPLLHFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALFGSDHARTFVDVLGRLPSF
Ga0207695_103177431	3300025913	Corn Rhizosphere	IHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTAALGTALAFTGSGHAHDVLEMIRRLPSF
Ga0207695_105933952	3300025913	Corn Rhizosphere	RAGVVTMIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF
Ga0207662_101640863	3300025918	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEM
Ga0207646_101114104	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLRTRAGVPGMIRSDDPLVYFRRRHLRDEVELAIGRSAVRVILALITLALGAALALSGSAHARDLADVLRWLPTF
Ga0207646_111776202	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	EKLGGPRWGNRAMTRSNDPLLHFRCRHLRDEVELVIGRSAVRVLLALLSFALAAALALSGSARARDIADVLRRLPSF
Ga0207644_111428562	3300025931	Switchgrass Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTAALGTALAFTGSGHAHDVLEMIRRLTSF
Ga0207665_101972413	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MIRSDDPLVYFRRRHLRDEVELAIGRSAVRVILALITLALGAALALSGSAHARDLADVLRWLPTF
Ga0207651_120332152	3300025960	Switchgrass Rhizosphere	MAGNWAMTRNQDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGHDIVELIRRLPSF
Ga0207640_100770361	3300025981	Corn Rhizosphere	MIHSENPLVHFRRRRARNEVELVIGRSAVRIILALLTAALGTALALTGSGHAHDVLEIIRRLPAF
Ga0207677_113403832	3300026023	Miscanthus Rhizosphere	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHAHDVLDLIRRLPPF
Ga0209238_12414741	3300026301	Grasslands Soil	MIRNNDPLVYFRRRHLRDEIELAIGRSAVRVILAVITLALASALAWSGDGTAHAVTNALRWLPAF
Ga0209805_10177552	3300026542	Soil	MIRSDDPLVYFRRRRLRDEMELAIGRSAVRVILALIALALGAALTLSGSAHARDIADALRWLPKF
Ga0209388_10194222	3300027655	Vadose Zone Soil	MTRSEDPLLHFRFRHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIAEIIRRLPQF
Ga0208981_11486611	3300027669	Forest Soil	MTGNEDPLLHFRRRHLRDEVELVIGRSAVRVILALLTFALAAALALTGSATGRDIVEMIRRLPP
Ga0209465_100179602	3300027874	Tropical Forest Soil	MIHSDNPLVHFRRRRSHNEVELVIGRSAVRVILAVITLALAAALALTGSEHARAFVSSIGRLPF
Ga0209590_101817341	3300027882	Vadose Zone Soil	MTRSEDPLLHFRFKHLRDEVELVIGKSAVRVILALLTFALAAALALTGSAHGRDIAEIIRRLPQF
Ga0209488_100257354	3300027903	Vadose Zone Soil	MTRNDDPLLRFRCRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPSF
Ga0209488_101871092	3300027903	Vadose Zone Soil	MTFSEDPLLHFRCRHVRDEVELVIGRSAVRVILALLTFALGAALALSGSARGRDIVEIIRRLPTF
Ga0268265_121422712	3300028380	Switchgrass Rhizosphere	SRNEVELVIGRSAVRIIVALLTVALGIALALTGSSHAQDVLEMIRRLPPF
Ga0137415_112887812	3300028536	Vadose Zone Soil	MTRNDDPLLRFRRRHLRDEVELVIGRSAVRVILALLSFALAAALALSGSAHARDVLDILRRLPAF
Ga0307311_100743322	3300028716	Soil	MTSSEDPLLHFRYRRLRNEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEIIRRLPPF
Ga0307298_100745002	3300028717	Soil	MTRNEDPLLHFRRRHLRDEVEVVIGRSAVRVILALLTFALAGALALSGSANGRDIV
Ga0307307_101162501	3300028718	Soil	SEDPLLHFRRRHLRNEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEIIRRLPPF
Ga0307282_105467582	3300028784	Soil	MVGNWAMTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGRDIVEIIRLLPSF
Ga0307282_106607561	3300028784	Soil	MVGNWAMTRNEDPLLHFRRRHLRDEVELVIGRSAVRVILALITFALAGALALSGSSQGRDIVEIIRRLQSF
Ga0307504_102489691	3300028792	Soil	MTRSEDPLVHFRFRHLRDEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEIIRRLPAF
Ga0307504_104541852	3300028792	Soil	MTRIEDPLLHFRCRHVRDEVELVIGKSAVRVILALLTFALGAALALSGSAHGRDIVEMIRRLPPF
Ga0307310_103957122	3300028824	Soil	MTFSEDPLLHFRRRHLRNEVELVIGRSAVRVILALLTFALGAALALSGSAHGRD
Ga0307277_103212011	3300028881	Soil	RRHLRNEVELVIGRSAVRVILALLTFALGAALALSGSAHGRDIVEIIRRLPPF
Ga0307469_100335594	3300031720	Hardwood Forest Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILAILTCALGAALALTGSGHAREVIDIIRRLPTF
Ga0307469_110635112	3300031720	Hardwood Forest Soil	MTRSEDPLLHFRCRHLRNDVELVIGKSAVRVILALLTFALAGALALSGSAHGRDVVEIFRRLAPFW
Ga0307468_1008657202	3300031740	Hardwood Forest Soil	MIHSENPLLQFRRRRSRNEVELVIGRSAVRIILAILTCALGAALALTGSGHAREVIDIIRRLPTF
Ga0307473_100006458	3300031820	Hardwood Forest Soil	MLRARAGVPGMIRSNDPLVYFRRRHLRDEVELAIGRSAVRVILALITLALGAALALSGSAHARDLADVLRWLPTF
Ga0307473_114310301	3300031820	Hardwood Forest Soil	MTRSDDPLLHFRCRHLRDEVELVIGRSAVRVILALLSFALAAALAFSGSAHARDVVDILRRLPSF
Ga0310812_101430642	3300032421	Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVAFGTALALTGSGHTHDVLEMIRRLPPF
Ga0310810_104419011	3300033412	Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVAFGTALALTGSGHAHDVLEMIRRLPP
Ga0373948_0000442_589_786	3300034817	Rhizosphere Soil	MIHSENPLLHFRRRRSRNEVELVIGRSAVRIILALLTVALGTALALTGSGHAHEVLEVIRRLPSF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F049259

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences