Metagenome / Metatranscriptome Family F049161

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F049161
Family Type	Metagenome / Metatranscriptome
Number of Sequences	147
Average Sequence Length	59 residues
Representative Sequence	PKRIQVKLLKPDLALALTWWSVSFPSSKQKVVGNTTMNLQKFDDGWKIVASHTSIAEM
Number of Associated Samples	99
Number of Associated Scaffolds	147

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	10.20 %
% of genes near scaffold ends (potentially truncated)	84.35 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.388 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.571 % of family members)
Environment Ontology (ENVO)	Unclassified (30.612 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 54.65% Coil/Unstructured: 45.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.17.4.27: ECA1476-like	d3d9ra1	3d9r	0.83224
d.17.4.0: automated matches	d5ig0a_	5ig0	0.81068
d.83.1.0: automated matches	d4m4da2	4m4d	0.78402
d.17.4.28: BaiE/LinA-like	d2rfra1	2rfr	0.78241
d.17.4.2: NTF2-like	d1jkga_	1jkg	0.77376

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 147 Family Scaffolds
PF11533	DUF3225	4.76
PF03466	LysR_substrate	4.08
PF01339	CheB_methylest	3.40
PF02915	Rubrerythrin	3.40
PF13474	SnoaL_3	2.72
PF02922	CBM_48	2.04
PF12680	SnoaL_2	1.36
PF06127	Mpo1-like	1.36
PF00999	Na_H_Exchanger	1.36
PF00584	SecE	0.68
PF03949	Malic_M	0.68
PF09370	PEP_hydrolase	0.68
PF13340	DUF4096	0.68
PF09363	XFP_C	0.68
PF02518	HATPase_c	0.68
PF13700	DUF4158	0.68
PF00532	Peripla_BP_1	0.68
PF01381	HTH_3	0.68
PF13401	AAA_22	0.68
PF12728	HTH_17	0.68
PF05050	Methyltransf_21	0.68
PF03167	UDG	0.68
PF05977	MFS_3	0.68
PF01569	PAP2	0.68
PF00581	Rhodanese	0.68
PF03795	YCII	0.68
PF11746	DUF3303	0.68
PF00072	Response_reg	0.68

COG ID	Name	Functional Category	% Frequency in 147 Family Scaffolds
COG2201	Chemotaxis response regulator CheB, contains REC and protein-glutamate methylesterase domains	Signal transduction mechanisms [T]	6.80
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	1.36
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	1.36
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	1.36
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	1.36
COG4539	2-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)	Lipid transport and metabolism [I]	1.36
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	1.36
COG0281	Malic enzyme	Energy production and conversion [C]	0.68
COG0686	Alanine dehydrogenase (includes sporulation protein SpoVN)	Amino acid transport and metabolism [E]	0.68
COG0690	Preprotein translocase subunit SecE	Intracellular trafficking, secretion, and vesicular transport [U]	0.68
COG0692	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.68
COG1573	Uracil-DNA glycosylase	Replication, recombination and repair [L]	0.68
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.68
COG2443	Preprotein translocase subunit Sss1	Intracellular trafficking, secretion, and vesicular transport [U]	0.68
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	0.68
COG3663	G:T/U-mismatch repair DNA glycosylase	Replication, recombination and repair [L]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
All Organisms	root	All Organisms	30.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
cellular organisms	root	All Organisms → cellular organisms	30.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.61 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	5.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.44 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	2.04 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.36 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	5.44 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.04 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.36 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.36 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	1.36 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.68 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	2.04 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.36 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	1.36 %
Maricaulales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales	0.68 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.68 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.68 %
Opitutae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae	0.68 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.68 %
Bacteroidetes Order II. Incertae sedis	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis	0.68 %
Maricaulaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.68 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.68 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.68 %
Opitutales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.68 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.68 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	0.68 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.68 %
Opitutaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae	0.68 %
Rhodothermaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae	0.68 %
Woodsholea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.68 %
unclassified Rhodothermaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae	0.68 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	0.68 %
Woodsholea maritima	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	0.68 %
unclassified Opitutaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae	0.68 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.68 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Opitutaceae bacterium TSB47	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	0.68 %
Rhodothermaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	0.68 %
unclassified Clostridium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium	0.68 %
Terrimonas	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas	0.68 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.68 %
Woodsholea maritima	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	0.68 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Clostridium sp. C105KSO13	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO13	0.68 %
unclassified Terrimonas	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → unclassified Terrimonas	0.68 %
Opitutaceae bacterium TSB47	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	0.68 %
Rhodothermaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	0.68 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.68 %
Woodsholea maritima	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	0.68 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.39 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2.04 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1.36 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.36 %
Terrimonas sp. NA20	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → unclassified Terrimonas → Terrimonas sp. NA20	0.68 %
Clostridium sp. C105KSO13	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO13	0.68 %
Opitutaceae bacterium TSB47	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	0.68 %
Rhodothermaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	0.68 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.68 %
Woodsholea maritima	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	0.68 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	0.68 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2166559005\|cont_contig89308	Not Available	630	Open in IMG/M
2170459010\|GIO7OMY02INBY4	Not Available	525	Open in IMG/M
2170459023\|GZGNO2B02GN61M	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	518	Open in IMG/M
2228664022\|INPgaii200_c0833981	Not Available	645	Open in IMG/M
3300002245\|JGIcombinedJ26739_100127462	Not Available	2400	Open in IMG/M
3300002245\|JGIcombinedJ26739_100982834	Not Available	728	Open in IMG/M
3300002245\|JGIcombinedJ26739_101171832	Not Available	657	Open in IMG/M
3300003219\|JGI26341J46601_10016945	All Organisms → cellular organisms → Bacteria	2388	Open in IMG/M
3300004091\|Ga0062387_101003987	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300004091\|Ga0062387_101420445	Not Available	553	Open in IMG/M
3300004091\|Ga0062387_101421095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Maricaulales → Maricaulaceae → Woodsholea → Woodsholea maritima	553	Open in IMG/M
3300004091\|Ga0062387_101491960	Not Available	542	Open in IMG/M
3300004092\|Ga0062389_103173739	Not Available	615	Open in IMG/M
3300004092\|Ga0062389_103611855	Not Available	580	Open in IMG/M
3300005434\|Ga0070709_10385136	Not Available	1043	Open in IMG/M
3300005434\|Ga0070709_11642942	Not Available	524	Open in IMG/M
3300005437\|Ga0070710_10577487	Not Available	780	Open in IMG/M
3300005437\|Ga0070710_10613055	Not Available	759	Open in IMG/M
3300005439\|Ga0070711_100377611	Not Available	1145	Open in IMG/M
3300005456\|Ga0070678_100301081	All Organisms → cellular organisms → Bacteria	1363	Open in IMG/M
3300005548\|Ga0070665_101196055	Not Available	771	Open in IMG/M
3300005602\|Ga0070762_11273390	Not Available	510	Open in IMG/M
3300005993\|Ga0080027_10077345	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300006059\|Ga0075017_100605484	Not Available	838	Open in IMG/M
3300006173\|Ga0070716_101264212	Not Available	595	Open in IMG/M
3300006175\|Ga0070712_100304436	All Organisms → cellular organisms → Bacteria → Proteobacteria	1291	Open in IMG/M
3300006175\|Ga0070712_100759588	Not Available	830	Open in IMG/M
3300006175\|Ga0070712_101295612	Not Available	635	Open in IMG/M
3300006175\|Ga0070712_101717423	Not Available	549	Open in IMG/M
3300006176\|Ga0070765_100889589	Not Available	842	Open in IMG/M
3300006176\|Ga0070765_100929808	Not Available	822	Open in IMG/M
3300006176\|Ga0070765_101107845	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300006237\|Ga0097621_102190808	Not Available	529	Open in IMG/M
3300006881\|Ga0068865_100531241	All Organisms → cellular organisms → Bacteria	985	Open in IMG/M
3300009098\|Ga0105245_11846057	Not Available	657	Open in IMG/M
3300009101\|Ga0105247_10684203	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300009520\|Ga0116214_1274789	Not Available	643	Open in IMG/M
3300009551\|Ga0105238_12646922	Not Available	538	Open in IMG/M
3300010339\|Ga0074046_10271610	Not Available	1048	Open in IMG/M
3300010341\|Ga0074045_10667172	Not Available	661	Open in IMG/M
3300010341\|Ga0074045_10804882	Not Available	594	Open in IMG/M
3300010343\|Ga0074044_10028222	All Organisms → cellular organisms → Bacteria	3980	Open in IMG/M
3300010371\|Ga0134125_12443057	Not Available	568	Open in IMG/M
3300010379\|Ga0136449_100172754	Not Available	4178	Open in IMG/M
3300010379\|Ga0136449_100458885	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300010379\|Ga0136449_100718400	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1671	Open in IMG/M
3300010379\|Ga0136449_103003993	Not Available	658	Open in IMG/M
3300012361\|Ga0137360_10023113	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	4188	Open in IMG/M
3300012361\|Ga0137360_10427944	Not Available	1119	Open in IMG/M
3300012362\|Ga0137361_11350004	Not Available	637	Open in IMG/M
3300012923\|Ga0137359_10429461	Not Available	1170	Open in IMG/M
3300012924\|Ga0137413_11728790	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	515	Open in IMG/M
3300012951\|Ga0164300_10630678	Not Available	638	Open in IMG/M
3300012958\|Ga0164299_11518666	Not Available	523	Open in IMG/M
3300012984\|Ga0164309_11351860	Not Available	605	Open in IMG/M
3300012987\|Ga0164307_11822067	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300013296\|Ga0157374_11183872	Not Available	785	Open in IMG/M
3300013306\|Ga0163162_12321041	Not Available	616	Open in IMG/M
3300013306\|Ga0163162_12997442	Not Available	543	Open in IMG/M
3300014969\|Ga0157376_10549794	Not Available	1142	Open in IMG/M
3300016294\|Ga0182041_10841445	Not Available	822	Open in IMG/M
3300018042\|Ga0187871_10324246	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300020579\|Ga0210407_11344260	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → Terrimonas → unclassified Terrimonas → Terrimonas sp. NA20	532	Open in IMG/M
3300020580\|Ga0210403_10657465	Not Available	843	Open in IMG/M
3300020581\|Ga0210399_10565358	Not Available	942	Open in IMG/M
3300020583\|Ga0210401_10336990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1370	Open in IMG/M
3300020583\|Ga0210401_11037198	Not Available	679	Open in IMG/M
3300020583\|Ga0210401_11252099	Not Available	600	Open in IMG/M
3300021046\|Ga0215015_10003395	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → unclassified Clostridium → Clostridium sp. C105KSO13	514	Open in IMG/M
3300021088\|Ga0210404_10203212	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300021168\|Ga0210406_10461729	Not Available	1009	Open in IMG/M
3300021170\|Ga0210400_11138707	Not Available	630	Open in IMG/M
3300021171\|Ga0210405_10601312	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → unclassified Rhodothermaceae → Rhodothermaceae bacterium	856	Open in IMG/M
3300021171\|Ga0210405_11082082	Not Available	600	Open in IMG/M
3300021171\|Ga0210405_11296058	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	535	Open in IMG/M
3300021180\|Ga0210396_10201456	Not Available	1778	Open in IMG/M
3300021358\|Ga0213873_10068159	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	976	Open in IMG/M
3300021361\|Ga0213872_10073712	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	1537	Open in IMG/M
3300021361\|Ga0213872_10251505	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300021377\|Ga0213874_10005307	All Organisms → cellular organisms → Bacteria	2996	Open in IMG/M
3300021401\|Ga0210393_10304932	Not Available	1294	Open in IMG/M
3300021401\|Ga0210393_11607685	Not Available	515	Open in IMG/M
3300021402\|Ga0210385_10497674	Not Available	924	Open in IMG/M
3300021403\|Ga0210397_10556339	Not Available	873	Open in IMG/M
3300021404\|Ga0210389_10941113	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300021404\|Ga0210389_11140094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	602	Open in IMG/M
3300021405\|Ga0210387_10087070	All Organisms → cellular organisms → Bacteria	2590	Open in IMG/M
3300021405\|Ga0210387_10212433	Not Available	1682	Open in IMG/M
3300021405\|Ga0210387_10346324	Not Available	1312	Open in IMG/M
3300021405\|Ga0210387_10424929	Not Available	1178	Open in IMG/M
3300021405\|Ga0210387_10932364	Not Available	763	Open in IMG/M
3300021405\|Ga0210387_11250036	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300021405\|Ga0210387_11510219	Not Available	574	Open in IMG/M
3300021407\|Ga0210383_11291657	Not Available	610	Open in IMG/M
3300021420\|Ga0210394_10477892	All Organisms → cellular organisms → Bacteria	1097	Open in IMG/M
3300021420\|Ga0210394_10975665	Not Available	735	Open in IMG/M
3300021420\|Ga0210394_11250313	Not Available	636	Open in IMG/M
3300021432\|Ga0210384_10272643	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1523	Open in IMG/M
3300021432\|Ga0210384_10969923	All Organisms → cellular organisms → Bacteria	752	Open in IMG/M
3300021433\|Ga0210391_10126172	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2015	Open in IMG/M
3300021433\|Ga0210391_10453552	Not Available	1007	Open in IMG/M
3300021439\|Ga0213879_10033789	All Organisms → cellular organisms → Bacteria	1298	Open in IMG/M
3300021475\|Ga0210392_10853030	Not Available	681	Open in IMG/M
3300021475\|Ga0210392_10927227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	651	Open in IMG/M
3300021478\|Ga0210402_10427063	Not Available	1231	Open in IMG/M
3300021478\|Ga0210402_10924328	Not Available	799	Open in IMG/M
3300021478\|Ga0210402_11175463	Not Available	694	Open in IMG/M
3300022557\|Ga0212123_10319442	Not Available	1076	Open in IMG/M
3300022724\|Ga0242665_10325613	Not Available	544	Open in IMG/M
3300025906\|Ga0207699_10428289	Not Available	946	Open in IMG/M
3300025906\|Ga0207699_10768953	Not Available	707	Open in IMG/M
3300025915\|Ga0207693_10347010	Not Available	1162	Open in IMG/M
3300025915\|Ga0207693_10954870	Not Available	656	Open in IMG/M
3300025916\|Ga0207663_10747746	Not Available	776	Open in IMG/M
3300025916\|Ga0207663_11049795	Not Available	654	Open in IMG/M
3300025916\|Ga0207663_11480232	Not Available	547	Open in IMG/M
3300026557\|Ga0179587_10822304	Not Available	613	Open in IMG/M
3300027439\|Ga0209332_1089674	Not Available	553	Open in IMG/M
3300027521\|Ga0209524_1088592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	650	Open in IMG/M
3300027562\|Ga0209735_1124963	Not Available	560	Open in IMG/M
3300027565\|Ga0209219_1110609	Not Available	674	Open in IMG/M
3300027583\|Ga0209527_1126374	Not Available	570	Open in IMG/M
3300027591\|Ga0209733_1052886	Not Available	1072	Open in IMG/M
3300027603\|Ga0209331_1118566	Not Available	640	Open in IMG/M
3300027629\|Ga0209422_1027689	Not Available	1400	Open in IMG/M
3300027667\|Ga0209009_1133455	Not Available	631	Open in IMG/M
3300027674\|Ga0209118_1026594	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300027727\|Ga0209328_10155774	Not Available	694	Open in IMG/M
3300027727\|Ga0209328_10215694	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300027884\|Ga0209275_10902144	Not Available	509	Open in IMG/M
3300027908\|Ga0209006_10048833	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3806	Open in IMG/M
3300027908\|Ga0209006_10193063	Not Available	1772	Open in IMG/M
3300028047\|Ga0209526_10490517	Not Available	802	Open in IMG/M
3300028047\|Ga0209526_10962490	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	513	Open in IMG/M
3300028780\|Ga0302225_10256190	Not Available	834	Open in IMG/M
3300028780\|Ga0302225_10376438	Not Available	668	Open in IMG/M
3300028906\|Ga0308309_11084794	Not Available	692	Open in IMG/M
3300028906\|Ga0308309_11202989	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300029910\|Ga0311369_11025027	Not Available	650	Open in IMG/M
3300030007\|Ga0311338_10317362	Not Available	1712	Open in IMG/M
3300030399\|Ga0311353_10093283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → unclassified Opitutaceae → Opitutaceae bacterium TSB47	2943	Open in IMG/M
3300031028\|Ga0302180_10235827	Not Available	967	Open in IMG/M
3300031231\|Ga0170824_104884283	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031525\|Ga0302326_12813356	Not Available	601	Open in IMG/M
3300031890\|Ga0306925_12138707	Not Available	523	Open in IMG/M
3300031945\|Ga0310913_10646414	Not Available	749	Open in IMG/M
3300031947\|Ga0310909_11279841	Not Available	590	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.12%
Host-Associated	Host-Associated	10.20%
Engineered	Engineered	0.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.31%
Plants	Host-Associated → Plants	10.20%
Aquatic	Environmental → Aquatic	6.80%
Modeled	Engineered → Modeled	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	77.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.12%
Freshwater	Environmental → Aquatic → Freshwater	5.44%
Peat	Environmental → Terrestrial → Peat	4.76%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.72%
Roots	Host-Associated → Plants → Roots	1.36%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.68%
Sediment	Environmental → Aquatic → Sediment	0.68%
Simulated Communities (Sequence Read Mixture)	Engineered → Modeled → Simulated Communities (Sequence Read Mixture)	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	44.90%
Loam	Environmental → Terrestrial → Soil → Loam	29.25%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.76%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.40%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.04%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.68%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.68%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	17.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.44%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.44%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.72%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.36%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.68%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.68%
Unclassified	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.57%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	12.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.56%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	4.76%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.76%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	4.76%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.40%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.40%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.72%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.36%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.36%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.36%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.68%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.68%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.68%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.68%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.68%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.68%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.68%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.68%
Simulated	Engineered → Modeled → Simulated Communities (Sequence Read Mixture) → Unclassified → Unclassified → Simulated	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2166559005	Simulated microbial communities from Lyon, France	Engineered	Open in IMG/M
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021358	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3	Host-Associated	Open in IMG/M
3300021361	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2	Host-Associated	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027562	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027583	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027591	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027629	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M3 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030007	I_Palsa_E1 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300031028	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_2	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
cont_0308.00005840	2166559005	Simulated	VKLLKPDLALALTWWSVSFPSSKQKVVGNTTTNLQKFDDGWKIVASHTSVAGM
F62_02988010	2170459010	Grass Soil	GFIEPKRIQVKMLAADLAFALTWWSVSFPNTRQKVLGNTTMNLQKFDDGWKIVASHTSISEM
FA3_11234190	2170459023	Grass Soil	DRNAMGFVEPGRVQVRLLKPDLALALTWWTINFPNSKQRVVGNTTMNLQKFDDGWKIVASHSSTTEM
INPgaii200_08339811	2228664022	Soil	DSYINGYPDRAAMGFIQPKRIQVKLLKPDMALALTWWSITFPSSKQTVVGNTTMNLQKFDDGWKVIAAHSSTAEM
JGIcombinedJ26739_1001274626	3300002245	Forest Soil	MGFIQPERIKVKLLKPDLALTLSWWMVSFPSSKQTVVGSSTMNLQKFDDGWKIIASHASTAVN*
JGIcombinedJ26739_1009828342	3300002245	Forest Soil	VAALHDSYINGYPDRNAMGFIQPKCIQVKLLKPDLALALTWWSVSFPSSKQTVVGNSTMNLQKFG
JGIcombinedJ26739_1011718322	3300002245	Forest Soil	DLVLALMWWSISFPNSKQKVVGNSTMNLQKFADGWKVVAANSSTAEM*
JGI26341J46601_100169453	3300003219	Bog Forest Soil	AMGFINPARIQVKLLKPDFAFALTWWSVSFPNSKKKVVGNTTMNFEKFDDGWKIVASHTSTADM*
Ga0062387_1010039872	3300004091	Bog Forest Soil	ALALTWWSVTFPSSKQTVVGNSTMNLQKFSDGWKIVASHTSIAAM*
Ga0062387_1014204452	3300004091	Bog Forest Soil	MGSIEPGWGQVRLLKPDLALALTWWTINFPTSNQKVVGNTTMNLQKFDGVWKIVTSHS
Ga0062387_1014210951	3300004091	Bog Forest Soil	KLLKPDLALALTWWSVSFPSSKQKGAGNTTMNLEKFDDGWKIVASHTSIAEM*
Ga0062387_1014919602	3300004091	Bog Forest Soil	KRIQVKLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVESHTSTAEM*
Ga0062389_1031737392	3300004092	Bog Forest Soil	MGSIEPGWGQVRLLKPDLALALTWWTINFPTSNQKVVGNTTMNLQKFDGVWKIVASHSSTAEM*
Ga0062389_1036118551	3300004092	Bog Forest Soil	PDRNLMGYIDPVRIQVKLLKPDLALALTWWSISLPNSKRKVVGNSTMNLQKFDDGWKIVAAHTSTTDM*
Ga0070709_103851363	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	GYPGATEMGFIQPNRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDDGWKIVASHSSTNEM*
Ga0070709_116429421	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	NAMGFIQPKRIQVKLLKPDLALALTWWSVAYPSSKQNVVGNSTMNLQKFNDGWKIVASHTSVAGM*
Ga0070710_105774872	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGFIQPKRIQVKLLKPDLALALTWWSVSFPSSKQSVVGNSTMNLQKFNDGWKIVASHTSIAEM*
Ga0070710_106130551	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MGFIQPNRIQARLLKPDLALALTWRSINFPSSHLKVVGNTMMNFQKFDDG
Ga0070711_1003776111	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	YISPARIQIKLLKPDLALVLSWWSVSFPNSKQKVVGNTTMNLRKFNDTWKIVAAHSSTTDM*
Ga0070678_1003010811	3300005456	Miscanthus Rhizosphere	TEMGFIQPNRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDGGWKIIASHTSIDGM*
Ga0070665_1011960552	3300005548	Switchgrass Rhizosphere	DLALALTWWSISFSNSKQKVVGNSTINLEKFDDGWKIVASHSSTTEM*
Ga0070762_112733902	3300005602	Soil	SAMGFIQPKRIQVRLLKPDLALALTWWTIAFPSSNQKVVGNTTMNLQKFADGWKIVASHTSTNEM*
Ga0080027_100773451	3300005993	Prmafrost Soil	NGYPNRVAMGFIQPKRIQVKLLKSDPALALTWWSASFPTSQRTVVGTSTMNLQKFDDGWKIVASHTSISE*
Ga0075017_1006054841	3300006059	Watersheds	MGFINPARIQVKLLKPDLALALTWWSVAFPSSKQKVVGNTTMNLQKFDDGWKIVDSLTSTGRDVIRLPD*
Ga0070716_1012642121	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	RDSMGFITPERIQVKLLKPDLALAVTWWSISFPHSKLKIVGNTTMNLQKFDNGWKIVAAHSSTTDM*
Ga0070712_1003044361	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	AMGFIQPKRIQIKLLKPDLALALTWWTITFPTSKKTVVGNTTLDLQKFDDGWKIVASHSSTGDL*
Ga0070712_1007595881	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	QVRLLKPDFALALTWWTINFPTSNRKVVGNTTINLQKFDGLWKIVASHSSTAEM*
Ga0070712_1012956122	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	ALVLSWWSISFPNSKQRVVGNTTMNLQKFEEGWKIVASHSSTTGM*
Ga0070712_1017174231	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	IQPNRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNFQKFDDGWKIVASHSSTNEM
Ga0070765_1008895893	3300006176	Soil	MGFIQPKRIQVRLLKPDLALALTWWTIAFPSSNQKVVGNTTMNLQKFADGWKIVASHTSTNEM*
Ga0070765_1009298082	3300006176	Soil	QVKLLKPDLALALSWWSVTFPSSKKKVVGNTTMNLQKFDDGWKIVTSHTSTTEM*
Ga0070765_1011078451	3300006176	Soil	ALALTWWSVTFPSSKQKMVGNTTTNLQKFDDGWKIVASHTSVAGM*
Ga0097621_1021908081	3300006237	Miscanthus Rhizosphere	KPDLALALTWWSINFPSSHQKLVGNTTMNVQKFDGGWKIVASHTSIDGM*
Ga0068865_1005312411	3300006881	Miscanthus Rhizosphere	MGFIQPNRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDGGWKIIASHTSIDGM*
Ga0105245_118460572	3300009098	Miscanthus Rhizosphere	DLALALTWWSVSFPNSKQEVVGSSTMNLQKFENGWRIIASHTSISGM*
Ga0105247_106842031	3300009101	Switchgrass Rhizosphere	DFAVALTWWSVTFPNSKQEVVGNSTMNLQKIGDDWKIITSHTSIAGM*
Ga0116214_12747891	3300009520	Peatlands Soil	MGFIEPKSIQIKLLKPDLALALTWWSISFPTSKKTAAGNTTMSLQKFDDGWN
Ga0105238_126469222	3300009551	Corn Rhizosphere	SGRYRDGFIQPNRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDDGWKIVASHSNTNVM*
Ga0074046_102716101	3300010339	Bog Forest Soil	PNRNSMGFITPARIQVKLLKPDLALALSWWSVAFPSSKQKVVGNTTMNLQKFDDGWKIVASHTSTAEM*
Ga0074045_106671721	3300010341	Bog Forest Soil	RIQVKLLKPDLALALSWWSVTFPSSKKKVVGNTTMNLQKFDDGWKIVTSHTSTTEM*
Ga0074045_108048821	3300010341	Bog Forest Soil	PKRIQVKLLKPDLALALTWWSVSFPSSKQKVVGNTTMNLQKFDDGWKIVASHTSIAEM*
Ga0074044_100282229	3300010343	Bog Forest Soil	KLLKPDLALALTWWSVSFPSSKHKVVGNTTMNLQKFDDGWKIVASHTSTAEM*
Ga0134125_124430571	3300010371	Terrestrial Soil	MGSIELVRIQVRLLKPDLALALTWWTINFPSSHKKVMGTTTMNLKKFDDGWKIVTSHSSTGRI*
Ga0136449_1001727546	3300010379	Peatlands Soil	MGFIEPKSIQIKLLKPDLALALTWWSISFPTSKKTAAGNTTMSLQKFDDGWNASSFLI*
Ga0136449_1004588851	3300010379	Peatlands Soil	PGAMAMGFIQPKRIQVRLLKPDLALALTWWSVAFPSSKQAVVGNSVMNLQKFADGWKIIASHTSIGGM*
Ga0136449_1007184003	3300010379	Peatlands Soil	MGFVQAKRIQVRLLKPDLALALTWWTINFPSSNQKVVAETTMNLQKFDDGWKITASHTSITE*
Ga0136449_1030039931	3300010379	Peatlands Soil	VRLLKPDFALALTWWTINFPSSHQKVVGNTTMNLQKFDDGWKIVVSHTSTGREIFPRN*
Ga0137360_100231131	3300012361	Vadose Zone Soil	PDRNAMGFINPARSQVRLLEPDLALALTWWSVTFPTSKQKVIGNTTMNLQKFDDGWKVVASHSSTAEM*
Ga0137360_104279441	3300012361	Vadose Zone Soil	MGFIQPKRIQVKLLKPDLALALTWWSASFPSSQQTVVGTSTMNLQKFDDGWKIVASHTGISAM*
Ga0137361_113500041	3300012362	Vadose Zone Soil	MGFIEPGHIQVKLLKPDLALALTWWLVSFPSSKQKVVGNTTMNLQKFDDGWKIVASHSSTNEM*
Ga0137359_104294612	3300012923	Vadose Zone Soil	TEMGFIQPSRIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNFQKFDDGWKIVASHSSTNEM*
Ga0137413_117287901	3300012924	Vadose Zone Soil	AMGFIQPKRIQVKLLRPDLALALTWWSISFPNSKQKTVGNTTMDLQKFDDGWKVIAAHSSTGGM*
Ga0164300_106306781	3300012951	Soil	PDFALALTWWTITFPASNQQVIGNTTMNLQKFDDGWKIVAYHSSTNEM*
Ga0164299_115186661	3300012958	Soil	ALALTWWSVSFPNSKQKVVGNTTMNLQKFAVGWTIIASHTSIAEI*
Ga0164309_113518601	3300012984	Soil	VNGYPDRNAMGFIEPKRIQIKLLAPDLALALTWWSISFPGSRQKLDGSTTMNLQKSDAGWKIIASHTSISPK*
Ga0164307_118220671	3300012987	Soil	SSMGFIEPKRIQVKLLKPDFAVALTWWSVTFPNSKQEVVGNSTLNLQKIGDDWKIITSHTSIAGM*
Ga0157374_111838721	3300013296	Miscanthus Rhizosphere	PDLALALTWWSINFPSSHQKLVGNTTMNLQKFDDGWKIEASHSSTTEM*
Ga0163162_123210411	3300013306	Switchgrass Rhizosphere	SYINGYPNKNDMGYLQPIRIQIKLLQPDFALALTWWTLSFPTSLQKVVGTSTMNLEKFDIGWKIVASHTSISGM*
Ga0163162_129974421	3300013306	Switchgrass Rhizosphere	MGSIELVRIQVRLLKPDLALALTWWTINFPSSHKKVMGTTTMNLKKFDDGWKIVASHSSTGRI*
Ga0157376_105497942	3300014969	Miscanthus Rhizosphere	MGSIELVRIQVRLVKPDLALALTWWAINFPSSHKKVMGTTTMNLKKFDDGWKIVASHSSTGRI*
Ga0182041_108414451	3300016294	Soil	PAMMGFSTPSRVQVRMLKPDLALALTWWSISFPKSKQKVVGNTTMNLQKFEDGWKIISCHSSTAEM
Ga0187871_103242461	3300018042	Peatland	DLALALTWWSISFPNSKQKVVGNSTMNLERFDDGWKIVASHSSTADM
Ga0210407_113442601	3300020579	Soil	MGFIQPKRIQVKLLKPDLALARTWWSVTFPSSKQEMVGDSTMNLQKFDDGWKIVASHTSVAGM
Ga0210403_106574651	3300020580	Soil	GRIQVKLLKPDLALALTWWTINFPSSHQKVVGNTTMNLQKFADGWKIVASHTSTNEM
Ga0210399_105653581	3300020581	Soil	RIQVKLLKPDLALALTWWSISLPNSKRKVVGNSTMNLQKFDDGWKIVAAHTSTTDM
Ga0210401_103369901	3300020583	Soil	ITPARIQVKLLKPDLALAVTWWSISFPNSKLKIVGNTTMNLQKFDDGWKIVAAHSSTTDM
Ga0210401_110371982	3300020583	Soil	VKLLKPDLALALTWWTINFPTSNQKLVGNTTMNLQKFDDGWKIVASHSNTNEM
Ga0210401_112520991	3300020583	Soil	DRNTMGFIQPKRIQVKLLKPDLALALTWWSVSFPSSKQSVVGNSTMNLQKFNDGWKIVASHTSIAEM
Ga0215015_100033951	3300021046	Soil	MGFVQPKRIQVRLLKSDLALALTWWTINFPSSNQKVVGDTTMNLQKFDDGWKIIASHSSTNVM
Ga0210404_102032122	3300021088	Soil	MGFIEPASVQVKLLKPDLAIALTWWAFNFPGSRQRVVGNTTMNLQKFDEGWKIVASHSSTAKI
Ga0210406_104617291	3300021168	Soil	NYMGYIEPVRIQVKLLKPDLALALTWWSISLPNSKRKVAGNSTMNLQKFDDGWKIVAAHTSTTDM
Ga0210400_111387071	3300021170	Soil	FLPERVSGHRNAMGFIQPKRIQVKLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVASHTSTAEM
Ga0210405_106013122	3300021171	Soil	RLLKPDLALALTWWSVTFPTSKQKVVGNTTMNLQKFDDGWKVVASHSSTAEM
Ga0210405_110820821	3300021171	Soil	IEPERIQIKLLRPDLALALTWWSISFPALKQKVVGNTTMNVQRFDDGWKVIAAHTSTAEM
Ga0210405_112960581	3300021171	Soil	DSYINGYPGTTAMGLIQPKRIQVRLLKPDLALALTWWSVTFPTSKQALEGNSVMNLQKFGDGWKIIASQTSISGM
Ga0210396_102014564	3300021180	Soil	MGFIQPKRIQVKLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVASHTSTAEM
Ga0213873_100681591	3300021358	Rhizosphere	LALALTWWSVTFPNSKQKVVGNTTMNLKKFDDGWRIVASHTSTAEM
Ga0213872_100737121	3300021361	Rhizosphere	KLLRKDLALALTWWSVTFPNSKQKVVGNTTMNLKKFDDGWRIVASHTSTAEM
Ga0213872_102515051	3300021361	Rhizosphere	PTRIQIKLLKPDLALSLIWWSISFPNSKQHVVGNSTMNLEKFDDGWKIVASHSSTAEM
Ga0213874_100053071	3300021377	Plant Roots	RIQVKLLKPDIALALTWWSITFPNSKHKVVGNTTMNLQKFGDSWKIVAAHSSTTDM
Ga0210393_103049323	3300021401	Soil	MGSIQSKRIQVRLLKPDLALALTWWSISFPASEQEVGNTTMDLEKFNDGWKIIA
Ga0210393_116076851	3300021401	Soil	AMGFIQPRRIQVKLLRPDMALALTWWSLSFPNSKRKAVGNTTMDLQKFDDGWKIIAAHSSTAEM
Ga0210385_104976741	3300021402	Soil	MGFIEPERIQIKLLRPDLALALTWWSISFPALKQKVVGNTTMNVQRFDDGWKVIAAHTSTAEM
Ga0210397_105563391	3300021403	Soil	YPDRGAMGFIQPRRIQVKLLRPDMALALTWWSLSFPNSKRKAVGNTTMDLQKFDDGWKIIAAHSSTAEM
Ga0210389_109411131	3300021404	Soil	KLLKPDLALALTWWSVSFPSSKQKVVGNTTMNLQRFDDGWKIVASHTSVAEM
Ga0210389_111400941	3300021404	Soil	QVRLLKPDLALALTWWSISFPTSKQEVVGNTTMDLEKFIDGWKIVASHTSTGRI
Ga0210387_100870701	3300021405	Soil	IQVKFLKPDLALALTWWSVSFPNAKQSVVGNSTMNLRKFNDGWKIVASHTSTAEM
Ga0210387_102124333	3300021405	Soil	MGFIQPKRIQVKLLKPDLALALTWWSAVFPNSKQEIEGNSTMNLQKFDDGWKM
Ga0210387_103463241	3300021405	Soil	MGSIQSKRIQVRLLKPDLALALTWWSISFPASKQKVVGNTTMDLEKFNDGWKIIASHTSIDEM
Ga0210387_104249291	3300021405	Soil	KLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVASHTSTAEM
Ga0210387_109323641	3300021405	Soil	RIQVKLLKPDLALALTWWTIDFPSSKQKVVGNTTMNLQKFDDGWKIVASHSSTNVM
Ga0210387_112500362	3300021405	Soil	IEPGRIQVKLLKPDLALALTWWTIQFPSSNQKVVGNTTMNLQRFDDGWKIVASHSSTNEM
Ga0210387_115102192	3300021405	Soil	IQPKRIQVKLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVASHTSTAEM
Ga0210383_112916572	3300021407	Soil	MGSIQSKRIQVRLLKPDLALALTWWSISFPASEQKEVGNTTMDLEKFNDGWKIIV
Ga0210394_104778921	3300021420	Soil	LKPGLALALTWWSVTFPSSKQKMVGNTTTNLQKFDDGWKIVASHTSVAGM
Ga0210394_109756653	3300021420	Soil	VNGYPGATGMGFIQPNRIQVSLLKLDLALALTWWTINFPSSHQKVVGNTTMNFQKFDDGWKIVASHSSTSQM
Ga0210394_112503131	3300021420	Soil	LALALTWWTVNFPSSHQKVVGNTTMNFQKFDDGWKIVASHTSTDRI
Ga0210384_102726432	3300021432	Soil	MGFIEPASVQVRLLKPDLAIALTWWAFNFPGSRQRVVGNTTMNLQKFDE
Ga0210384_109699232	3300021432	Soil	MGFIQPKRIQVKLLKPDFALALTWWSVSFPSSKQPVVGNSTMNLQKFDDGWKIVASHSSTNVM
Ga0210391_101261722	3300021433	Soil	VRLLKPDLALALTWWTINLPSSNERVVGNTTMNLQKFDDGWKIVASHFSTTEM
Ga0210391_104535521	3300021433	Soil	KRIQVKLLKPDLALALTWWSVSFPSSKHTVVGNTTMDLQKFDDGWKIVASHTSTAEM
Ga0213879_100337892	3300021439	Bulk Soil	NAYPNRESMGHMTPTRIQIKLLKPDLALSLIWWSISFPNSKQHVVGNSTMNLEKFDDGWKIVASHSSTAEM
Ga0210392_108530302	3300021475	Soil	MGYIQPKRIQVRLLKPDLALALTWWSISFPTSKQEVVGNTTMDLEKFIDGWKIVASHTSTGRI
Ga0210392_109272271	3300021475	Soil	GFIQPKRIQVKLLKPDLALALTWWSVSFPSSKQNVVGNSTMNLAKFNDGWKIVASHTSVAGM
Ga0210402_104270633	3300021478	Soil	IAMGFVQPKRIQVRLLKPDLALALTWWTINFPSSNQKVVGDTTMNLQKFDDGWKIIASHSSTNVM
Ga0210402_109243281	3300021478	Soil	MGFIEPASVQVKLLKPDLAIALTWWAFNFPGSRQKVVGNTTMNLQKFDEGWKIVASHSSTAKI
Ga0210402_111754631	3300021478	Soil	LALTWWTINFPSSNQKVVGNTTMNLQKFGDGWKIVASHSSTNEM
Ga0212123_103194421	3300022557	Iron-Sulfur Acid Spring	DGFANSTRIQVKLLKPDLALALTSWSMSFPNSKYKVVETTTMNLQKFDDGWRIVASNSNT
Ga0242665_103256131	3300022724	Soil	KLLKPDLALAVTWWSISFPNSKLKIVGNTTMNLQKFDDGWKIVAAHSSTTDM
Ga0207699_104282891	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MGFIQPNRIQARLLKPDLALALTWRSINFPSSHQKVVGNTMMNFQKFDDGW
Ga0207699_107689532	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	RIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDGGWKIIASHTSIDGM
Ga0207693_103470101	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	KRIQIKLLKPDRNIRPYWWSVSFPSSKQEMVGNSTMNLQKFDDGWKIVDSHTSVAGM
Ga0207693_109548702	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AMGFIQPKRIQIKLLKPDLALALTWWTITFPTSKKTVVGNTTLDLQKFDDGWKIVASHSSTGDL
Ga0207663_107477463	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	RIQVRLLKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDDGWKIVASHSSTNEM
Ga0207663_110497951	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	NGYPDRNGMGFIEPKRIQIKLLTPELALALTWWSVSFPNSKQKVVGNTTMNLQKFAVGWRIIASHTSIAEI
Ga0207663_114802321	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	LKPDLALALTWWSINFPSSHQKLVGNTTMNLQKFDGGWKIIASHTSIDGM
Ga0179587_108223042	3300026557	Vadose Zone Soil	LLKPDLALALTWWSVSFPSSKQKVVGNTATNLQRFDDGWKIVASHTSTAEI
Ga0209332_10896741	3300027439	Forest Soil	NAMGFIEPKRIQVKLLKPDFALALTWWSVSFPSSKQKVVGNTTMNLQKFDDGWKIVASHTSIAEM
Ga0209524_10885921	3300027521	Forest Soil	FIQPKRIQVRLLKPDLALALTWWSVSFPTSKQPLEGNSVMNLQKFDEGWKIIASQTSTSG
Ga0209735_11249631	3300027562	Forest Soil	LRPDMALALTWWSITFPTSKQTVVGNTTMDLQKFDDGWKVIAAHSSTTEM
Ga0209219_11106091	3300027565	Forest Soil	PDLALALTWWTISFPSSNQKAVGTTTMNLQKFDGGWKIVASHSSTNEM
Ga0209527_11263742	3300027583	Forest Soil	RLLKPDLALALTWWSVTFPTSKQQMVGNSVMNLQKFDHGWKIIASHTNIGGL
Ga0209733_10528863	3300027591	Forest Soil	MGFIQPTRIQVKLLKPDLALALTWWTAAFPSSLQTVVGTSTMNLQKFDDGWKIVASHTSISEM
Ga0209331_11185662	3300027603	Forest Soil	MGYINPARIQIKLLKPDLVLALMWWSILFPNSKQKVVGNSTMNLQKFADGWKVVAANSST
Ga0209422_10276894	3300027629	Forest Soil	ALALTWWSASFPTSKLKVVGNTTMDLQKFDDGWKIVASHTSTGGV
Ga0209009_11334552	3300027667	Forest Soil	PDRNAMGFIEPKRIQVKLLKPDFALALTWWSVSFPSSKQKVVGNTTMNLQKFDDGWKIVASHTSIAEM
Ga0209118_10265945	3300027674	Forest Soil	LLKPDLALALTWWSVSFPTSKQPLEGNSVMNLQKFDEGWKIIASQTSTSGI
Ga0209328_101557741	3300027727	Forest Soil	VLALMWWSISFPNSKQKVVGNSTMNLQKFADGWKVVAANSSTAEM
Ga0209328_102156941	3300027727	Forest Soil	SYLNGYPNRNSMGAIEPKRIQVKLLKPDLALALTWWSISFPASKQTVVGNTTMNLQKFDDGWKVVVAHSSTAEM
Ga0209275_109021441	3300027884	Soil	DSYINGYPDRAAMGFIQAKRIQVKLLKSDLALALTWWSITFPTSKQTVVGNTTMDLQKFDDGWKVIAAHSSTTEM
Ga0209006_100488331	3300027908	Forest Soil	QVKLLKPDLALALTWWSVSFPSSKQPVVGNSTMNVQKFDDGWKIIASHTSIAGM
Ga0209006_101930634	3300027908	Forest Soil	PGSTAMGFIQPKRIQVRLLKPDLALALTWWSVSFPTSEKPLEGNSVVNLQKFDEGWKIVASHTNISVM
Ga0209526_104905171	3300028047	Forest Soil	PRRIQVKLLKPDLALALTWWSITFPTSKKTVMGNTTLDLQKFDDGWKVVAAHSSTGQM
Ga0209526_109624901	3300028047	Forest Soil	SYINGYPGTTAMGLIQPKRIQVRLLKPDLALALTWWSVTFPTSKQALEGNSVMNLQKFGDCWKIIASQTSISGM
Ga0302225_102561901	3300028780	Palsa	YINGYLDRNAMGFIQPIRIQVRLLKPDFAMALTWWSASFPNSTRAVVGDSTVDLEKFDDGWKIVASHTSTSGI
Ga0302225_103764381	3300028780	Palsa	LALALTWWTISFPNSKQKVVGNTTMNLQKFDDAWKVVAAHSSTAEM
Ga0308309_110847941	3300028906	Soil	KLLKPDLALALTWWSAAFPSSKQEIVGNSTINLQKFDDGWKIVASQTSVGGV
Ga0308309_112029891	3300028906	Soil	PGLALALTWWSVTFPSSKQKMVGNTTTNLQKFDDGWKIVASHTSVAGM
Ga0311369_110250272	3300029910	Palsa	LKPDLALALTWWTISFPNSKQKVVGNTTMNLQKFDDAWKVVAAHSSTAEM
Ga0311338_103173622	3300030007	Palsa	MGFVQPTRIQIKLLKPDLALALTSWSASFPTSKLKVVGNSTMDLQQFDDGWKIVASHSSTGGV
Ga0311353_100932831	3300030399	Palsa	MGYINPARIQVKLLKPDLALALTWWTISFPNSKQKVVGNTTMNLQKFDDAWKVVAAHSSTAEM
Ga0302180_102358272	3300031028	Palsa	RIRIKLLKPDLAVVLSWWSISFPNSKQRVAGNTTMNLQKFDDGWKIVAAHSSTTDR
Ga0170824_1048842831	3300031231	Forest Soil	VKLLKPDLALALTWWTINFPTSNQKVVGNTTMNLQKFDDGWKIVASHSSTNEM
Ga0302326_128133562	3300031525	Palsa	GRIQVKLLKPDLALALTWWSISFPNSKQKVVGNTTMNVQKFDGVWRVIAAHTSTAEM
Ga0306925_121387071	3300031890	Soil	VQVRILKPDLALALTWWSVSFPKSKQKVVGNTTINLQKFDDGWKIIASHSSTTEM
Ga0310913_106464141	3300031945	Soil	VQVRMLKPDLALALTWWSISFPKSKQKVVGNTTMNLQKFEDGWKIISCHSSTAEM
Ga0310909_112798411	3300031947	Soil	LKPDLALALTWWSISFPKSKQKVVGNTTMNLQKFEDGWKIISCHSSTAEM

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F049161

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences