NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F049112

Metagenome / Metatranscriptome Family F049112

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F049112
Family Type Metagenome / Metatranscriptome
Number of Sequences 147
Average Sequence Length 45 residues
Representative Sequence VQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGELWPRF
Number of Associated Samples 127
Number of Associated Scaffolds 147

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 97.26 %
% of genes near scaffold ends (potentially truncated) 97.96 %
% of genes from short scaffolds (< 2000 bps) 87.76 %
Associated GOLD sequencing projects 118
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (95.918 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa
(8.163 % of family members)
Environment Ontology (ENVO) Unclassified
(21.769 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.020 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.31%    β-sheet: 0.00%    Coil/Unstructured: 81.69%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 147 Family Scaffolds
PF02954HTH_8 2.72
PF00672HAMP 0.68
PF04773FecR 0.68
PF027373HCDH_N 0.68
PF13492GAF_3 0.68
PF00512HisKA 0.68
PF02518HATPase_c 0.68

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 147 Family Scaffolds
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.68
COG0287Prephenate dehydrogenaseAmino acid transport and metabolism [E] 0.68
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.68
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.68
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 0.68
COG1748Saccharopine dehydrogenase, NADP-dependentAmino acid transport and metabolism [E] 0.68
COG20843-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenaseLipid transport and metabolism [I] 0.68


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms95.92 %
UnclassifiedrootN/A4.08 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573001|GZR05M102GBGPJAll Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis539Open in IMG/M
3300001084|JGI12648J13191_1034687All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300001593|JGI12635J15846_10376256All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis864Open in IMG/M
3300002245|JGIcombinedJ26739_100706468All Organisms → cellular organisms → Bacteria → Acidobacteria887Open in IMG/M
3300002245|JGIcombinedJ26739_101537911All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300005177|Ga0066690_10438747All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter885Open in IMG/M
3300005435|Ga0070714_100667446All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1001Open in IMG/M
3300005436|Ga0070713_101691270All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005541|Ga0070733_10211487All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1270Open in IMG/M
3300005554|Ga0066661_10085916All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1861Open in IMG/M
3300005568|Ga0066703_10225440All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1139Open in IMG/M
3300005602|Ga0070762_10002920All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter8121Open in IMG/M
3300005610|Ga0070763_10235254All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter988Open in IMG/M
3300005712|Ga0070764_11045183All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300005921|Ga0070766_11147184All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300006028|Ga0070717_11173057All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300006176|Ga0070765_100846166All Organisms → cellular organisms → Bacteria → Acidobacteria865Open in IMG/M
3300006800|Ga0066660_11266060All Organisms → cellular organisms → Bacteria → Acidobacteria577Open in IMG/M
3300006953|Ga0074063_12506776All Organisms → cellular organisms → Bacteria → Acidobacteria1122Open in IMG/M
3300007258|Ga0099793_10332669All Organisms → cellular organisms → Bacteria → Acidobacteria741Open in IMG/M
3300009520|Ga0116214_1381211All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300009522|Ga0116218_1160345All Organisms → cellular organisms → Bacteria → Acidobacteria1020Open in IMG/M
3300009634|Ga0116124_1174847All Organisms → cellular organisms → Bacteria → Acidobacteria598Open in IMG/M
3300009639|Ga0116122_1273381All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300009759|Ga0116101_1004860All Organisms → cellular organisms → Bacteria → Acidobacteria2220Open in IMG/M
3300009759|Ga0116101_1193765Not Available516Open in IMG/M
3300009824|Ga0116219_10504235All Organisms → cellular organisms → Bacteria → Acidobacteria669Open in IMG/M
3300010358|Ga0126370_11514541All Organisms → cellular organisms → Bacteria → Acidobacteria638Open in IMG/M
3300010379|Ga0136449_103495452All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300010876|Ga0126361_10562253All Organisms → cellular organisms → Bacteria → Acidobacteria1802Open in IMG/M
3300011269|Ga0137392_11026916All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300012201|Ga0137365_10985871All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300012203|Ga0137399_11465666All Organisms → cellular organisms → Bacteria → Acidobacteria569Open in IMG/M
3300012918|Ga0137396_10640162All Organisms → cellular organisms → Bacteria → Acidobacteria786Open in IMG/M
3300012918|Ga0137396_11155974All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300012927|Ga0137416_11483595All Organisms → cellular organisms → Bacteria → Acidobacteria616Open in IMG/M
3300012960|Ga0164301_11609258All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5539Open in IMG/M
3300014168|Ga0181534_10813513All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5553Open in IMG/M
3300014199|Ga0181535_10727609All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300014495|Ga0182015_10403762All Organisms → cellular organisms → Bacteria → Acidobacteria881Open in IMG/M
3300014501|Ga0182024_11837338All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300015374|Ga0132255_102797407All Organisms → cellular organisms → Bacteria → Acidobacteria746Open in IMG/M
3300016371|Ga0182034_12071603All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300017927|Ga0187824_10275788All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300017930|Ga0187825_10111790All Organisms → cellular organisms → Bacteria → Acidobacteria950Open in IMG/M
3300017937|Ga0187809_10191171All Organisms → cellular organisms → Bacteria → Acidobacteria723Open in IMG/M
3300017938|Ga0187854_10370845All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5603Open in IMG/M
3300017943|Ga0187819_10083593All Organisms → cellular organisms → Bacteria → Acidobacteria1906Open in IMG/M
3300017943|Ga0187819_10452961All Organisms → cellular organisms → Bacteria → Acidobacteria734Open in IMG/M
3300017961|Ga0187778_10031884All Organisms → cellular organisms → Bacteria → Acidobacteria3224Open in IMG/M
3300017975|Ga0187782_10520949All Organisms → cellular organisms → Bacteria → Acidobacteria910Open in IMG/M
3300018006|Ga0187804_10092040All Organisms → cellular organisms → Bacteria → Acidobacteria1237Open in IMG/M
3300018007|Ga0187805_10600781All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5520Open in IMG/M
3300018013|Ga0187873_1328237All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300018019|Ga0187874_10006000All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis7647Open in IMG/M
3300018019|Ga0187874_10405319All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5550Open in IMG/M
3300018022|Ga0187864_10076473All Organisms → cellular organisms → Bacteria → Acidobacteria1794Open in IMG/M
3300018030|Ga0187869_10249104All Organisms → cellular organisms → Bacteria → Acidobacteria861Open in IMG/M
3300018035|Ga0187875_10137136All Organisms → cellular organisms → Bacteria → Acidobacteria1374Open in IMG/M
3300018088|Ga0187771_10049787All Organisms → cellular organisms → Bacteria → Acidobacteria3261Open in IMG/M
3300018088|Ga0187771_10592298All Organisms → cellular organisms → Bacteria → Acidobacteria940Open in IMG/M
3300020580|Ga0210403_11166196All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300020583|Ga0210401_11100588All Organisms → cellular organisms → Bacteria → Acidobacteria653Open in IMG/M
3300021170|Ga0210400_10580483All Organisms → cellular organisms → Bacteria → Acidobacteria925Open in IMG/M
3300021178|Ga0210408_11362568All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300021403|Ga0210397_10326547All Organisms → cellular organisms → Bacteria → Acidobacteria1132Open in IMG/M
3300021404|Ga0210389_10134907All Organisms → cellular organisms → Bacteria → Acidobacteria1911Open in IMG/M
3300021404|Ga0210389_11146629All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5600Open in IMG/M
3300021433|Ga0210391_10379570All Organisms → cellular organisms → Bacteria → Acidobacteria1109Open in IMG/M
3300021474|Ga0210390_10197114All Organisms → cellular organisms → Bacteria → Acidobacteria1703Open in IMG/M
3300021474|Ga0210390_10605488All Organisms → cellular organisms → Bacteria → Acidobacteria918Open in IMG/M
3300021559|Ga0210409_10517687All Organisms → cellular organisms → Bacteria → Acidobacteria1057Open in IMG/M
3300024225|Ga0224572_1051596All Organisms → cellular organisms → Bacteria → Acidobacteria766Open in IMG/M
3300025482|Ga0208715_1014579All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae1547Open in IMG/M
3300025576|Ga0208820_1000939All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis17764Open in IMG/M
3300025929|Ga0207664_11071187All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300025939|Ga0207665_11517815All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia532Open in IMG/M
3300026529|Ga0209806_1323551All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5517Open in IMG/M
3300026557|Ga0179587_10018807All Organisms → cellular organisms → Bacteria → Acidobacteria3699Open in IMG/M
3300027168|Ga0208239_1013851All Organisms → cellular organisms → Bacteria → Acidobacteria746Open in IMG/M
3300027439|Ga0209332_1087633All Organisms → cellular organisms → Bacteria → Acidobacteria561Open in IMG/M
3300027545|Ga0209008_1004149All Organisms → cellular organisms → Bacteria → Acidobacteria3445Open in IMG/M
3300027559|Ga0209222_1063097All Organisms → cellular organisms → Bacteria → Acidobacteria713Open in IMG/M
3300027667|Ga0209009_1199550All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300027729|Ga0209248_10039173All Organisms → cellular organisms → Bacteria → Acidobacteria1469Open in IMG/M
3300027729|Ga0209248_10152619All Organisms → cellular organisms → Bacteria → Acidobacteria689Open in IMG/M
3300027738|Ga0208989_10104606All Organisms → cellular organisms → Bacteria → Acidobacteria963Open in IMG/M
3300027812|Ga0209656_10297985All Organisms → cellular organisms → Bacteria → Acidobacteria747Open in IMG/M
3300027812|Ga0209656_10484790All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300027842|Ga0209580_10446976All Organisms → cellular organisms → Bacteria → Acidobacteria644Open in IMG/M
3300027855|Ga0209693_10292505All Organisms → cellular organisms → Bacteria → Acidobacteria795Open in IMG/M
3300027867|Ga0209167_10169148All Organisms → cellular organisms → Bacteria → Acidobacteria1154Open in IMG/M
3300027869|Ga0209579_10662365All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300027874|Ga0209465_10364029All Organisms → cellular organisms → Bacteria → Acidobacteria724Open in IMG/M
3300027875|Ga0209283_10667833All Organisms → cellular organisms → Bacteria → Acidobacteria652Open in IMG/M
3300027879|Ga0209169_10167641All Organisms → cellular organisms → Bacteria → Acidobacteria1145Open in IMG/M
3300027884|Ga0209275_10257195All Organisms → cellular organisms → Bacteria → Acidobacteria959Open in IMG/M
3300027889|Ga0209380_10695801All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5584Open in IMG/M
3300027895|Ga0209624_10624774All Organisms → cellular organisms → Bacteria → Acidobacteria714Open in IMG/M
3300028773|Ga0302234_10224351All Organisms → cellular organisms → Bacteria → Acidobacteria811Open in IMG/M
3300028879|Ga0302229_10125835All Organisms → cellular organisms → Bacteria → Acidobacteria1197Open in IMG/M
3300028906|Ga0308309_10028126All Organisms → cellular organisms → Bacteria → Acidobacteria3817Open in IMG/M
3300028906|Ga0308309_10627070All Organisms → cellular organisms → Bacteria → Acidobacteria933Open in IMG/M
3300028906|Ga0308309_11189561All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300029907|Ga0311329_10296257All Organisms → cellular organisms → Bacteria → Acidobacteria1178Open in IMG/M
3300029910|Ga0311369_10719795All Organisms → cellular organisms → Bacteria → Acidobacteria817Open in IMG/M
3300029913|Ga0311362_11125193All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300029922|Ga0311363_11029723All Organisms → cellular organisms → Bacteria → Acidobacteria718Open in IMG/M
3300029943|Ga0311340_11020170All Organisms → cellular organisms → Bacteria → Acidobacteria678Open in IMG/M
3300029951|Ga0311371_10237010All Organisms → cellular organisms → Bacteria → Acidobacteria2653Open in IMG/M
3300029951|Ga0311371_11010216All Organisms → cellular organisms → Bacteria → Acidobacteria988Open in IMG/M
3300029999|Ga0311339_10379906All Organisms → cellular organisms → Bacteria → Acidobacteria1482Open in IMG/M
3300030490|Ga0302184_10384814Not Available548Open in IMG/M
3300030646|Ga0302316_10428854Not Available530Open in IMG/M
3300030677|Ga0302317_10094199All Organisms → cellular organisms → Bacteria → Acidobacteria1440Open in IMG/M
3300030688|Ga0311345_10173987All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae2243Open in IMG/M
3300030746|Ga0302312_10299842All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Acidobacteriales bacterium 13_2_20CM_2_55_5605Open in IMG/M
3300030878|Ga0265770_1116409Not Available558Open in IMG/M
3300030879|Ga0265765_1058783Not Available540Open in IMG/M
3300030940|Ga0265740_1019277All Organisms → cellular organisms → Bacteria → Acidobacteria691Open in IMG/M
3300031261|Ga0302140_10077820All Organisms → cellular organisms → Bacteria → Acidobacteria3444Open in IMG/M
3300031344|Ga0265316_11069014All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300031446|Ga0170820_16591770All Organisms → cellular organisms → Bacteria → Acidobacteria1372Open in IMG/M
3300031708|Ga0310686_100198130All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium558Open in IMG/M
3300031708|Ga0310686_106336431All Organisms → cellular organisms → Bacteria → Acidobacteria3556Open in IMG/M
3300031708|Ga0310686_116063808All Organisms → cellular organisms → Bacteria4418Open in IMG/M
3300031715|Ga0307476_10739046All Organisms → cellular organisms → Bacteria → Acidobacteria728Open in IMG/M
3300031718|Ga0307474_10023081All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4537Open in IMG/M
3300031753|Ga0307477_10097649All Organisms → cellular organisms → Bacteria → Acidobacteria2041Open in IMG/M
3300031823|Ga0307478_10066828All Organisms → cellular organisms → Bacteria → Acidobacteria2708Open in IMG/M
3300031823|Ga0307478_10205769All Organisms → cellular organisms → Bacteria → Acidobacteria1585Open in IMG/M
3300032180|Ga0307471_101593785All Organisms → cellular organisms → Bacteria → Acidobacteria809Open in IMG/M
3300032180|Ga0307471_102238193All Organisms → cellular organisms → Bacteria → Acidobacteria689Open in IMG/M
3300032782|Ga0335082_10751992All Organisms → cellular organisms → Bacteria → Acidobacteria836Open in IMG/M
3300032805|Ga0335078_12385628All Organisms → cellular organisms → Bacteria → Acidobacteria550Open in IMG/M
3300032828|Ga0335080_10980070All Organisms → cellular organisms → Bacteria → Acidobacteria862Open in IMG/M
3300032828|Ga0335080_11958810All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300032829|Ga0335070_10541202All Organisms → cellular organisms → Bacteria → Acidobacteria1100Open in IMG/M
3300032896|Ga0335075_10442941All Organisms → cellular organisms → Bacteria → Acidobacteria1357Open in IMG/M
3300032897|Ga0335071_11449993All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300032955|Ga0335076_11742580All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300033004|Ga0335084_10481789All Organisms → cellular organisms → Bacteria → Acidobacteria1275Open in IMG/M
3300033004|Ga0335084_11330323All Organisms → cellular organisms → Bacteria → Acidobacteria714Open in IMG/M
3300033134|Ga0335073_10489351All Organisms → cellular organisms → Bacteria → Acidobacteria1409Open in IMG/M
3300034124|Ga0370483_0359380All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium505Open in IMG/M
3300034163|Ga0370515_0153159All Organisms → cellular organisms → Bacteria → Acidobacteria988Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil8.16%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa8.16%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.48%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil7.48%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.48%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.12%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland4.76%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.76%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.76%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.76%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.40%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.40%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.72%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.72%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.72%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.72%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog2.72%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.04%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.36%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil1.36%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil1.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.68%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil0.68%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.68%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.68%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.68%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.68%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.68%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.68%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.68%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.68%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573001Grass soil microbial communities from Rothamsted Park, UK - FD2 (NaCl 300g/L 5ml)EnvironmentalOpen in IMG/M
3300001084Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O1EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006953Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009520Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaGEnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009634Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_150EnvironmentalOpen in IMG/M
3300009639Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40EnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009824Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaGEnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010876Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014199Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018022Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40EnvironmentalOpen in IMG/M
3300018030Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100EnvironmentalOpen in IMG/M
3300018035Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_10EnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300024225Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5Host-AssociatedOpen in IMG/M
3300025482Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025576Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027168Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF037 (SPAdes)EnvironmentalOpen in IMG/M
3300027439Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027545Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027559Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027884Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028879Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N1_3EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029907I_Bog_N1 coassemblyEnvironmentalOpen in IMG/M
3300029910III_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030490Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030646Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_2EnvironmentalOpen in IMG/M
3300030677Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N3_3EnvironmentalOpen in IMG/M
3300030688II_Bog_N2 coassemblyEnvironmentalOpen in IMG/M
3300030746Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_1EnvironmentalOpen in IMG/M
3300030878Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030879Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030940Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031261Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1EnvironmentalOpen in IMG/M
3300031344Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaGHost-AssociatedOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032897Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300034124Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FD2_073883602189573001Grass SoilVETPTVLIISDEPDFSRRITARWQMERNVPTFTLLSGELW
JGI12648J13191_103468723300001084Forest SoilVDHLTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDLWPRSIDNFAVAIVGP
JGI12635J15846_1037625623300001593Forest SoilVEAPTVLIISDEVDFSRRITARWQMERNVPAFTVLSGDL
JGIcombinedJ26739_10070646823300002245Forest SoilVETPTVLIIADEADFSRSVTARWQMERNVPTFTLLSGELWARSAVASFDVA
JGIcombinedJ26739_10153791123300002245Forest SoilVDRPTVLVISDDVGFSRTLTARWQTERHVPTFTVLSGDLWPRTIEDFEVAIVG
Ga0066690_1043874723300005177SoilVDQPTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDLGPRSVENFAVAIVGPLRRELL
Ga0070714_10066744613300005435Agricultural SoilVDTPTVLIISDEADFSRRITARWQMERNVPTFTLLSGELWPRFAVDI
Ga0070713_10169127013300005436Corn, Switchgrass And Miscanthus RhizosphereVQPPTVLVISDDVEFSRSVTARWQSERNVPAFTVLSGDLWP
Ga0070733_1021148713300005541Surface SoilVDRPTVLVISDDVEFSRSLTARWQQERNAPTFTMLSGNLWPRSVDNFEVAIV
Ga0066661_1008591613300005554SoilLQVDHPTVLIISDEVDFSRRVTSRWQRERNVPTFTLLSGDLWPRFA
Ga0066703_1022544013300005568SoilLSVEMPTVLIISDEADFSRRITARWQMERNIPTFTLLSGELWPRFSVDV
Ga0070762_1000292013300005602SoilVDQPTVLIISDEVDFSRRVTARWQMERSVPTFTMLSGDLWPRFAVDS
Ga0070763_1023525413300005610SoilVDHPTVLVISDDVEFSRSITTRWQMERHVPTFTLLSGDLWPR
Ga0070764_1104518323300005712SoilVQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGDLWPRFAVDV
Ga0070766_1114718413300005921SoilVDQPTVLVISDDVEFSRSITARWQMERHVPTFTLIRGDLWPRYVDNFAVAIVG
Ga0070717_1117305713300006028Corn, Switchgrass And Miscanthus RhizosphereMLRVESPTVLIISDEADFSRRITARWQMERKVPTFTLLSG
Ga0070765_10084616623300006176SoilVDQPTVLVISDDVEFSRSITTRWQMERHVPTFTLLSGDLWPRSIDNFA
Ga0066660_1126606013300006800SoilVDQPTVLIISDDVDFSRRITARWQMERTVPAFTLLSG
Ga0074063_1250677613300006953SoilVQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGDLWPHFAVD
Ga0099793_1033266923300007258Vadose Zone SoilVEHATGLIISDEVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVDAFD
Ga0116214_138121113300009520Peatlands SoilVDYPTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDLWPRSIDNFAVAI
Ga0116218_116034513300009522Peatlands SoilLQAPTVLIICDEVDFSRRITARWQMERNVPTFTLLSGDLWPRFAVDVFDVAIVGELRRDL
Ga0116124_117484713300009634PeatlandVDHPTVLVISDDVDFSRSITARWQVERNVPTFTMLSGDLWPRSVD
Ga0116122_127338113300009639PeatlandVDTPTVLIISDEADFSRRITARWQMERNVPMFTLLSGE
Ga0116101_100486043300009759PeatlandVQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGELWPRFAVDVF
Ga0116101_119376513300009759PeatlandLDQATVLVISEDAEFSRSITASWQTERTAPTFTMLSGNLWPRAVDDFEVAIV
Ga0116219_1050423513300009824Peatlands SoilVQAPTVLIICDEVDFSRRITARWQMERNVPTFTLLSGD
Ga0126370_1151454123300010358Tropical Forest SoilVETPTVLIISDEAEFSRRITARWQMERNVFTFTLLSGEL
Ga0136449_10349545213300010379Peatlands SoilVQAPTVLIICDEVDFSRRITARWQMERNVPTFTLLSGDLWPRFAVDVFDVAIVGELRRDL
Ga0126361_1056225333300010876Boreal Forest SoilVDQPTVLVISDDVEFSRSITARWQMERHVPTFTMLSGNLWPRCVDNFAVAIV
Ga0137392_1102691613300011269Vadose Zone SoilVDQPTALIISDDVDFSRRVTARWQMERMAPTFTLLSG
Ga0137365_1098587123300012201Vadose Zone SoilVQAPTVLIISDEVDFSRRITARWQMERNVPTFTMLSGELWPRFAV
Ga0137399_1146566623300012203Vadose Zone SoilLQVDHPTVLIISDEVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVDAFDVAI
Ga0137396_1064016223300012918Vadose Zone SoilVEHPTVLIISDEVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVD
Ga0137396_1115597413300012918Vadose Zone SoilVDHPTVLIISDDVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVD
Ga0137416_1148359523300012927Vadose Zone SoilVEHPTVLIISDEVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVDAFDVA
Ga0164301_1160925823300012960SoilMPTVLIISDEVDFSRRITARWQMERNIPTFTLLSGELWPRFSVDVFDVA
Ga0181534_1081351313300014168BogVDHPTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDLWPRSI
Ga0181535_1072760913300014199BogLQGKGSFEVQAPTVLIISDEVDFTRRVTARWQMERNVPTFTLLSGDLWPRFA
Ga0182015_1040376213300014495PalsaVDHPTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDLWPRSIDNFAVAIVGPLRREV
Ga0182024_1183733813300014501PermafrostVEHPTVLVISDDVGFSRSLTARWQAERHVPTFTILSGDLWPRTVEDFEVAIVGPL
Ga0132255_10279740713300015374Arabidopsis RhizosphereVVATPTVLIISDEADFSRRITARWQMERNVPTFTLLSGEIYF
Ga0182034_1207160323300016371SoilVVATPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFDVAI
Ga0187824_1027578813300017927Freshwater SedimentMPTVLIISDEVDFSRRITARWQMERNIPTFTLLSGELWPRFSVDVFDVAIIGQ
Ga0187825_1011179023300017930Freshwater SedimentMPTVLIISDEADFSRRITARWQSERNVPTFTLLSGELWPHFAAD
Ga0187809_1019117113300017937Freshwater SedimentMPTVLIISDEADFSRRITARWQSERNVPTFTLLSGE
Ga0187854_1037084513300017938PeatlandVEHPTVLVISDDVEFSRSVTARWQTERNVPTFTMLSGDLWPRSVDSFE
Ga0187819_1008359333300017943Freshwater SedimentVDTPTVLIISDDVDFSRRITARWQMERTVPTFTLLSGDLWPRFAADVF
Ga0187819_1045296123300017943Freshwater SedimentVDQPSVLVISDDVEFSRSITARWQIERHVPTFTMLSGDLW
Ga0187778_1003188413300017961Tropical PeatlandVETPTVLIIADDAEFSRRITARWQMERNVPTFTLLSGELWPRFAADVFDVAIVGQLRRDL
Ga0187782_1052094913300017975Tropical PeatlandVETPTVLIISDESEFSRRVTARWQMERNVPTFTLLSGELWPRFVVD
Ga0187804_1009204023300018006Freshwater SedimentMPTVLIISDEADFSRRITARWQSERNVPTFTLLSGELWPR
Ga0187805_1060078123300018007Freshwater SedimentMPTVLIISDEADFSRRITARWQSERNVPTFTLLSGELWPRFAADVFDV
Ga0187873_132823713300018013PeatlandVDHPTVLVISDDVDFSRSITARWQVERNEPTFTMLSGD
Ga0187874_1000600013300018019PeatlandVDHPTVLVISDDVEFSRSIIARWQAERNVPAFTMLSGDLWPRSVDNF
Ga0187874_1040531923300018019PeatlandVEAPTVLLISDEVDFSRRIAARWQMERNAPAFTVLSGDLWPRFAV
Ga0187864_1007647313300018022PeatlandVDHPTVLVISDDVEFSRSIIARWQAERNVPAFTMLSGDLWPRSVDNFE
Ga0187869_1024910423300018030PeatlandVEHPTVLVISDDVGFSRSLTARWQAERHVPTFTILSG
Ga0187875_1013713613300018035PeatlandLDQATVLVISEDAEFSRSITASWQTERTAPTFTMLSGNLWPRAVDDFE
Ga0187771_1004978743300018088Tropical PeatlandVETPTVLIISDEPDFSRRITARWQMERTVPTFTLLSGELWPRFAV
Ga0187771_1059229823300018088Tropical PeatlandVDHPTVLVISDEVEFSRSITARWQMERHVPTFTMLSGDLWPRSIDNFAVAIVG
Ga0210403_1116619623300020580SoilVEPPTVLIISDEVDFSRRITARWQMEPTPPAFTILSGD
Ga0210401_1110058823300020583SoilVDTPTVLIISDEADFSRRVTARWQMERNVPTFTLLSGD
Ga0210400_1058048313300021170SoilVDQPTALIISDDVDFSRRVTARWQMERTVPTFTLLSGD
Ga0210408_1136256813300021178SoilVQAPTVLIISDDVDFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFD
Ga0210397_1032654713300021403SoilVQAPTVLIISDEVDFSRRVTARWQMERNVPTFTLLSGDLWPRFAADVF
Ga0210389_1013490733300021404SoilVDRPTVLVISDDVGFSRSLTARWQAERHVPTFTVLSG
Ga0210389_1114662913300021404SoilVLIISDDGDFSRRITARWQMERTVPTFTLLSGDLWPRFAVDIF
Ga0210391_1037957013300021433SoilVDHPTVLVISDDVEFSRSITARWQMERHVPTFTMLSGDLWPRSIDNFAVAIVGPLRRELL
Ga0210390_1019711413300021474SoilVQAPTVLIISDEVDFSRRVTARWQMERNVPTFTLLSGDLW
Ga0210390_1060548823300021474SoilVDQPTVLVISDDVEFSRSITTRWQMERHVPTFTLLSGDLWPRS
Ga0210409_1051768713300021559SoilVQTPTVLIISDEPDFSRRITARWQMERNVPTFTLLSGELWPRFAADVFDV
Ga0224572_105159623300024225RhizosphereVEHPTVLVISDDVEFSRSITARWQMERHVPMFTLLSGDLWPRS
Ga0208715_101457913300025482Arctic Peat SoilVEAPTVLIICDEVDFSRRITARWQMERNVPTFTLLSG
Ga0208820_1000939153300025576PeatlandVDHPTVLVISDDVEFSRSIIARWQAERNVPAFTMLSGDLW
Ga0207664_1107118723300025929Agricultural SoilVVETPTVLIISDEADFSRRITARWQSERNVPTFTLLSGELWPRFAADVF
Ga0207665_1151781513300025939Corn, Switchgrass And Miscanthus RhizosphereMNFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFDVA
Ga0209806_132355113300026529SoilMPTVLIISDEADFSRRITARWQMERNIPTFTLLSGELWPRFSVDVFDV
Ga0179587_1001880743300026557Vadose Zone SoilVDQPTVLVISDEVEFSRSVTARWQMERHVPTFTLLSGDLWPRSVDNFAVAIVGPLRR
Ga0208239_101385113300027168Forest SoilVQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGELWPRF
Ga0209332_108763323300027439Forest SoilVDHPTVLVISDEVDFSRSITARWQMERHVPTFTLLGGDLWPCSVDNFAVAI
Ga0209008_100414913300027545Forest SoilVDRPTVLVISDDVGFSRSLTARWQTERHVPTFTVLSGDLWPRTIED
Ga0209222_106309713300027559Forest SoilVEQPTVLVISDDVEFSRSITARWQTEPSVPTFTMLSGDLWP
Ga0209009_119955023300027667Forest SoilVEPPTVLIISDEVDFSRRITARWQMERTPPAFTILSGDLWP
Ga0209248_1003917313300027729Bog Forest SoilVDQPTVLVISDDVEFSRSITGRWQIERHVPMFTLL
Ga0209248_1015261913300027729Bog Forest SoilVDHPTVLVISDDVEFSRSITARWQAERSVPAFTMLSGDLWPRSVDDFAVAIVGPLRRE
Ga0208989_1010460613300027738Forest SoilLDQPTALIISDDVEFSRRVTARWQMERTVPTFTLLSG
Ga0209656_1029798513300027812Bog Forest SoilVDHPTVLVISDDVDFSRSITARWQAERNVPTFTMLSGDLWPRSVDNFEVAIV
Ga0209656_1048479013300027812Bog Forest SoilVDQPTVLVISDDVEFSRGITARWQMERHVPTFTMLSG
Ga0209580_1044697623300027842Surface SoilVETPTVLIISDEADFSRRITARWQMERNVPTFTLLSGELWPRFAVDIF
Ga0209693_1029250523300027855SoilVDQPTVLVISDDVEFSRSITARWQAERNVPAFTMLSGDLWPRSVDSFEVA
Ga0209167_1016914823300027867Surface SoilVDRPTVLVISDDVEFSRSITSRWQMERHVPTFTMLSGGLWPRSVDNFAVAIVG
Ga0209579_1066236523300027869Surface SoilVDRPTVLVISDDVGFSRRLTARWQAERHVPTFTIL
Ga0209465_1036402913300027874Tropical Forest SoilVETPTVLIISDEADFSRRVTGRWQMERNVPTFTLLSGELWPRFAAD
Ga0209283_1066783323300027875Vadose Zone SoilLQVEHPTVLIISDEVDFSRRVTSRWQMERNVPTFTLLS
Ga0209169_1016764113300027879SoilVDHLTVLVISDDVEFSRSITARWQMERHVPTFTLLSGD
Ga0209275_1025719513300027884SoilVETPTVLIISDDPNLSRRVTARWQAERTVPTFTLL
Ga0209380_1069580123300027889SoilVQTPTVLIISDEPDFSRRITARWQMERNVPTFTLLSGELWPRFAA
Ga0209624_1062477413300027895Forest SoilVDQPSVLVISDDVEFSRSITARWQMERHVPTFTMLSGDLWPRSIDN
Ga0302234_1022435113300028773PalsaVDHPTVLVISDDVEFSRSITTRWQMERNVPAFTMLSGDLWPRFVDN
Ga0302229_1012583513300028879PalsaVEHPTVLVISDDVGFSRKLTARWQAERHAPTFTILSGDLWPRTVEDFAV
Ga0308309_1002812643300028906SoilVDQPTVLVISDDVEFSRSITARWQMERHVPTFTLLSGDL
Ga0308309_1062707013300028906SoilVDQPTVLVISDHVEFSRSITTRWQMERHVPTFTLLSGDLWPRSIDNFAVAIVGPL
Ga0308309_1118956113300028906SoilVDQPTVLVISDDVEFSRSITARWQAERNVPAFTMLSGDLWPR
Ga0311329_1029625713300029907BogVEHPTVLVISDDVEFSRSVTARWQTERNVPTFTMLS
Ga0311369_1071979513300029910PalsaVETPTVLIISDDADFSRRITARWQMERHVPTFTLLSGELW
Ga0311362_1112519313300029913BogLDQATVLVISEDAEFSRSITASWQTERTAPTFTMLSGNLWP
Ga0311363_1102972313300029922FenVEHPTVLVISDDVEFSRSVTARWQTERNVPTFTMLSGDL
Ga0311340_1102017013300029943PalsaMDQPTVLIISDEVDFSRRVTARWQMERSVPTFTMLSGDLWPRFA
Ga0311371_1023701013300029951PalsaVDQPTVLVISDHVEFSRGITARWQMERQVPTFTLLSGDLWPCSIDNFAVAIVGP
Ga0311371_1101021613300029951PalsaVDQPTVLVISDDVEFSRSITARWQMERHVPTFTVLSGDLWPRC
Ga0311339_1037990623300029999PalsaVEHPTVLVISDDVGFSRKLTARWQAERHAPTFTMLSGDLWPRTVE
Ga0311339_1140638123300029999PalsaVDQLTVLLISDHVEFSRSITARWQMERQVPTFTLLSGDLWPCSIDNFAVAIVGPLHRELL
Ga0302184_1038481413300030490PalsaVDHPTVLVISDDVEFSRSITTRWQMERNVPAFTML
Ga0302316_1042885423300030646PalsaVEAPTVLIISDEVDFSRRVTARWQMERHVPTFTLLSGELWPRF
Ga0302317_1009419923300030677PalsaVEHPTVLVISDDVGFSRKLTARWQAERHAPTFTILSGDLWPRTVED
Ga0311345_1017398743300030688BogVEHPTVLVISDDVEFSRSVTARWQTERNVPTFTMLSG
Ga0302312_1029984223300030746PalsaVDHPTVLVISDDVEFSRNITARWQMERNVPTFTLLSGDLWPRSIDSF
Ga0265770_111640913300030878SoilVDRPTVLVISDDVGFSRRLTARWQAERHVPTFTILSGDLWPRTVEDFEVAIVGPLRRELL
Ga0265765_105878313300030879SoilVDQPNVLIISKDVDFSRRITARWQMERVVPAFTLVSGDLWPRFAADSFDVAIVGEIRRELLS
Ga0265740_101927713300030940SoilVDQPTVLIISDEVDFSRRVTARWQMERSVPTFTMLSGDL
Ga0302140_1007782043300031261BogVEHPTVLVISDDVEFSRSVTARWQTERNVPTFTMLSGDLWPRSVDSFEVAIVGPLRRELL
Ga0265316_1106901423300031344RhizosphereVQASTVLIISDEVDFSRRITARWQMERNVPTFTLL
Ga0170820_1659177013300031446Forest SoilVETPTVLIISDEPDFSRRITARWQMERNVPTFTLLSGELWPRFAA
Ga0310686_10019813013300031708SoilVEHPSVLIISDEVEFSRSVTARWQAERNIPTFTLLSGDLW
Ga0310686_10633643113300031708SoilVEHPTVLVISDDVEFSRSITARWQTERNAPTFTIL
Ga0310686_11606380813300031708SoilVQAPTVLIISDEVDFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFDVALV
Ga0307476_1073904613300031715Hardwood Forest SoilVDHPTVLVISDDVEFSRSITARWQTERHVPTFTLL
Ga0307474_1002308163300031718Hardwood Forest SoilVETPTVLIISDDPDFSRRVTARWQMERTVPTFTLLSGELWPRFAADIFD
Ga0307477_1009764943300031753Hardwood Forest SoilVEAPTVLIISDEVDFSRRIAARWQMERSAPAFTVL
Ga0307478_1006682843300031823Hardwood Forest SoilMPTVLIISDEADFSRRITARWQSERNVPTFTLLSGELWPRFAA
Ga0307478_1020576933300031823Hardwood Forest SoilVEVPTVLIISDDVDFSRRITARWQMKRNAPAFTVLSSDL
Ga0307471_10159378513300032180Hardwood Forest SoilLQVDHPTVLIISDEVDFSRRVTSRWQMERNVPTFTLLSGDLWPRFAVDAFDVAIV
Ga0307471_10223819313300032180Hardwood Forest SoilVETPTVLIISDEADFARRVTARWQMERNVPTFTLL
Ga0335082_1075199213300032782SoilVETPTVLIISDEADFSRRVTARWQMERNVPTFTLL
Ga0335078_1238562823300032805SoilLRKGIVPVDTPTVLVISDEADFSRRITARWQMERNVP
Ga0335080_1098007023300032828SoilVVATPTVLIISDEADFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFDVAIV
Ga0335080_1195881023300032828SoilMRETPTVVIISDEPDFSRRITARWQMERTVPTFTLL
Ga0335070_1054120223300032829SoilVNASTVLIISDEVDFSRRITARWQMERSVPTFTLLSGELWPR
Ga0335075_1044294123300032896SoilMRADHATVLIISDDAEFSRSVTARWQMERNVPTFT
Ga0335071_1144999323300032897SoilVETPTVLIISDEGDFSRRITARWQMERNVPTFTLLSGELWPRVAADVFD
Ga0335076_1174258013300032955SoilMQPVETPTVLIISDEADFSRRITARWQMERNVPTFTLLSGELWPRFAVDV
Ga0335084_1048178913300033004SoilVETPTVLIISDEAEFSRRITARWQMERNVPTFTLLSGELWPRFAV
Ga0335084_1133032323300033004SoilVQLVETPTVLIIADEADFSRRITARWQMERNVPTFTLLSGEL
Ga0335073_1048935113300033134SoilVVATPTVLIISDEADFSRRITARWQMERNVPTFTLLSGELWPRFAVDVFDV
Ga0370483_0359380_361_5043300034124Untreated Peat SoilMNHPTVLVISDDVEFSRGVTARWQAERNVPTFTVLGGELWPGNMDNFD
Ga0370515_0153159_836_9883300034163Untreated Peat SoilVEHPTVLVISDDVGFSRKLTARWQAERHAPTFTILSGDLWPRTVEDFAVAI


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.