Metagenome / Metatranscriptome Family F048297

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F048297
Family Type	Metagenome / Metatranscriptome
Number of Sequences	148
Average Sequence Length	49 residues
Representative Sequence	MSHPSEYHEHDPEPGSGLTGFAAIKYTAIVIIVLAILAFLAWYIVPAFD
Number of Associated Samples	116
Number of Associated Scaffolds	148

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	74.15 %
% of genes near scaffold ends (potentially truncated)	36.49 %
% of genes from short scaffolds (< 2000 bps)	72.97 %
Associated GOLD sequencing projects	107
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (78.378 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.189 % of family members)
Environment Ontology (ENVO)	Unclassified (21.622 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (33.108 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 148 Family Scaffolds
PF04545	Sigma70_r4	29.05
PF05532	CsbD	8.11
PF00571	CBS	3.38
PF13581	HATPase_c_2	2.70
PF01740	STAS	2.03
PF01028	Topoisom_I	2.03
PF01814	Hemerythrin	1.35
PF13466	STAS_2	1.35
PF07228	SpoIIE	1.35
PF00584	SecE	0.68
PF08447	PAS_3	0.68
PF07730	HisKA_3	0.68
PF02518	HATPase_c	0.68
PF02896	PEP-utilizers_C	0.68
PF00480	ROK	0.68
PF01904	DUF72	0.68
PF00144	Beta-lactamase	0.68
PF06724	DUF1206	0.68
PF03640	Lipoprotein_15	0.68
PF13385	Laminin_G_3	0.68
PF01741	MscL	0.68
PF01418	HTH_6	0.68
PF00582	Usp	0.68
PF00912	Transgly	0.68
PF10706	Aminoglyc_resit	0.68

COG ID	Name	Functional Category	% Frequency in 148 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	8.11
COG3569	DNA topoisomerase IB	Replication, recombination and repair [L]	2.03
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.35
COG2443	Preprotein translocase subunit Sss1	Intracellular trafficking, secretion, and vesicular transport [U]	0.68
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.68
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.68
COG4585	Signal transduction histidine kinase ComP	Signal transduction mechanisms [T]	0.68
COG4564	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.68
COG4315	Predicted lipoprotein with conserved Yx(FWY)xxD motif (function unknown)	Function unknown [S]	0.68
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.68
COG3850	Signal transduction histidine kinase NarQ, nitrate/nitrite-specific	Signal transduction mechanisms [T]	0.68
COG0690	Preprotein translocase subunit SecE	Intracellular trafficking, secretion, and vesicular transport [U]	0.68
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.68
COG1970	Large-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.68
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.68
COG1737	DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains	Transcription [K]	0.68
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.68
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.68
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.68

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.73 %
Unclassified	root	N/A	20.27 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.05 %
Unclassified	root	N/A	20.27 %
Viruses	superkingdom	All Organisms → Viruses	0.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	78.38 %
Unclassified	root	N/A	20.27 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	64.86 %
Unclassified	root	N/A	20.27 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.68 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.51 %
Unclassified	root	N/A	20.27 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.68 %
Stenosarchaea group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group	0.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	42.57 %
Unclassified	root	N/A	20.27 %
Halobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	0.68 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.68 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	27.70 %
Unclassified	root	N/A	20.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.35 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.68 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.68 %
Halobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	0.68 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	27.70 %
Unclassified	root	N/A	20.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.35 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.68 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.68 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.68 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	27.70 %
Unclassified	root	N/A	20.27 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.35 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.68 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.68 %
Halobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	0.68 %
Actinobacteria bacterium RBG_19FT_COMBO_70_19	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	0.68 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.68 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.68 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.68 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2067725002\|GPICC_F5MS3JC01EOIM9	Not Available	502	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig1200250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1004	Open in IMG/M
2124908045\|KansclcFeb2_ConsensusfromContig148876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	864	Open in IMG/M
2199352025\|deepsgr__Contig_162131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	611	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11387374	Not Available	904	Open in IMG/M
3300000858\|JGI10213J12805_10023956	All Organisms → cellular organisms → Bacteria	1166	Open in IMG/M
3300000858\|JGI10213J12805_10181998	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300000953\|JGI11615J12901_11639651	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	753	Open in IMG/M
3300000956\|JGI10216J12902_100130080	Not Available	731	Open in IMG/M
3300000956\|JGI10216J12902_100434800	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300000956\|JGI10216J12902_103839676	All Organisms → cellular organisms → Bacteria	1539	Open in IMG/M
3300003911\|JGI25405J52794_10096570	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300004114\|Ga0062593_100217634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1541	Open in IMG/M
3300004114\|Ga0062593_101238361	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300004157\|Ga0062590_102566997	Not Available	541	Open in IMG/M
3300004643\|Ga0062591_101278001	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	720	Open in IMG/M
3300005294\|Ga0065705_11123536	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300005338\|Ga0068868_100958107	Not Available	781	Open in IMG/M
3300005354\|Ga0070675_100122560	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2210	Open in IMG/M
3300005406\|Ga0070703_10008434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2898	Open in IMG/M
3300005713\|Ga0066905_100825600	All Organisms → cellular organisms → Bacteria	806	Open in IMG/M
3300005713\|Ga0066905_100945343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	757	Open in IMG/M
3300005713\|Ga0066905_102258875	Not Available	508	Open in IMG/M
3300005844\|Ga0068862_100184920	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1872	Open in IMG/M
3300005937\|Ga0081455_10012505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8467	Open in IMG/M
3300005937\|Ga0081455_10019372	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6439	Open in IMG/M
3300005937\|Ga0081455_10032414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4707	Open in IMG/M
3300005937\|Ga0081455_10145587	All Organisms → cellular organisms → Bacteria → Acidobacteria	1833	Open in IMG/M
3300005937\|Ga0081455_10430148	Not Available	908	Open in IMG/M
3300006049\|Ga0075417_10029808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2252	Open in IMG/M
3300006058\|Ga0075432_10072351	All Organisms → cellular organisms → Bacteria	1240	Open in IMG/M
3300006058\|Ga0075432_10230713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	744	Open in IMG/M
3300006572\|Ga0074051_10009272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8692	Open in IMG/M
3300006581\|Ga0074048_10123704	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4787	Open in IMG/M
3300006581\|Ga0074048_13319937	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300006844\|Ga0075428_100068720	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3875	Open in IMG/M
3300006844\|Ga0075428_100080281	Not Available	3560	Open in IMG/M
3300006844\|Ga0075428_100360855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1559	Open in IMG/M
3300006844\|Ga0075428_100659580	Not Available	1115	Open in IMG/M
3300006844\|Ga0075428_101354799	All Organisms → cellular organisms → Bacteria	747	Open in IMG/M
3300006845\|Ga0075421_100240936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	2221	Open in IMG/M
3300006847\|Ga0075431_100159331	All Organisms → cellular organisms → Bacteria	2321	Open in IMG/M
3300006847\|Ga0075431_100746453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	954	Open in IMG/M
3300006969\|Ga0075419_10125585	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300007790\|Ga0105679_10842692	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales → Halobacteriaceae	1641	Open in IMG/M
3300009011\|Ga0105251_10013022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4673	Open in IMG/M
3300009037\|Ga0105093_10981420	Not Available	500	Open in IMG/M
3300009053\|Ga0105095_10014900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4184	Open in IMG/M
3300009087\|Ga0105107_10172765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1518	Open in IMG/M
3300009094\|Ga0111539_10213959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2245	Open in IMG/M
3300009094\|Ga0111539_12311094	Not Available	624	Open in IMG/M
3300009100\|Ga0075418_10999392	Not Available	905	Open in IMG/M
3300009156\|Ga0111538_10334147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1918	Open in IMG/M
3300009157\|Ga0105092_10594685	Not Available	639	Open in IMG/M
3300009157\|Ga0105092_10882252	Not Available	527	Open in IMG/M
3300009166\|Ga0105100_10009554	All Organisms → cellular organisms → Bacteria	5620	Open in IMG/M
3300009166\|Ga0105100_10054786	All Organisms → cellular organisms → Bacteria	2314	Open in IMG/M
3300009174\|Ga0105241_11449612	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300009553\|Ga0105249_11415202	Not Available	767	Open in IMG/M
3300009789\|Ga0126307_10007332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7862	Open in IMG/M
3300009789\|Ga0126307_10593704	Not Available	894	Open in IMG/M
3300009810\|Ga0105088_1027264	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	913	Open in IMG/M
3300009812\|Ga0105067_1006137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1459	Open in IMG/M
3300009815\|Ga0105070_1041483	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	840	Open in IMG/M
3300009819\|Ga0105087_1123562	Not Available	505	Open in IMG/M
3300009823\|Ga0105078_1048997	Not Available	558	Open in IMG/M
3300009836\|Ga0105068_1015261	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1275	Open in IMG/M
3300009836\|Ga0105068_1018538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1173	Open in IMG/M
3300009840\|Ga0126313_10400388	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1089	Open in IMG/M
3300010036\|Ga0126305_10280882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1077	Open in IMG/M
3300010041\|Ga0126312_10187550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1443	Open in IMG/M
3300010042\|Ga0126314_10516789	Not Available	867	Open in IMG/M
3300010147\|Ga0126319_1082243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300010362\|Ga0126377_11760378	Not Available	695	Open in IMG/M
3300010362\|Ga0126377_11967123	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	660	Open in IMG/M
3300010400\|Ga0134122_10823526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	889	Open in IMG/M
3300011412\|Ga0137424_1025621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	941	Open in IMG/M
3300012022\|Ga0120191_10040359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300012159\|Ga0137344_1033581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	875	Open in IMG/M
3300012350\|Ga0137372_10773769	Not Available	690	Open in IMG/M
3300012353\|Ga0137367_10093459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2219	Open in IMG/M
3300012353\|Ga0137367_10176993	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300012532\|Ga0137373_10236190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1483	Open in IMG/M
3300012904\|Ga0157282_10403958	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	513	Open in IMG/M
3300012911\|Ga0157301_10047151	All Organisms → Viruses → Predicted Viral	1096	Open in IMG/M
3300013306\|Ga0163162_10762025	Not Available	1087	Open in IMG/M
3300015371\|Ga0132258_11512323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1695	Open in IMG/M
3300017965\|Ga0190266_11161476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	531	Open in IMG/M
3300018053\|Ga0184626_10013279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3257	Open in IMG/M
3300018054\|Ga0184621_10000846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	7231	Open in IMG/M
3300018056\|Ga0184623_10018730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3055	Open in IMG/M
3300018056\|Ga0184623_10121942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1206	Open in IMG/M
3300018079\|Ga0184627_10249641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	934	Open in IMG/M
3300018083\|Ga0184628_10239003	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	953	Open in IMG/M
3300018465\|Ga0190269_10284449	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	954	Open in IMG/M
3300018465\|Ga0190269_11922107	Not Available	511	Open in IMG/M
3300018469\|Ga0190270_10026293	All Organisms → cellular organisms → Bacteria	3706	Open in IMG/M
3300018476\|Ga0190274_10003443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9411	Open in IMG/M
3300019249\|Ga0184648_1331744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300019249\|Ga0184648_1447360	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	778	Open in IMG/M
3300019259\|Ga0184646_1317272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300019458\|Ga0187892_10024957	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5303	Open in IMG/M
3300020003\|Ga0193739_1007937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2822	Open in IMG/M
3300020020\|Ga0193738_1009344	All Organisms → cellular organisms → Bacteria	3230	Open in IMG/M
3300021081\|Ga0210379_10043606	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1768	Open in IMG/M
3300021081\|Ga0210379_10101677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1196	Open in IMG/M
3300021082\|Ga0210380_10326708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	699	Open in IMG/M
3300022534\|Ga0224452_1052237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1215	Open in IMG/M
3300025885\|Ga0207653_10000686	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	11606	Open in IMG/M
3300025904\|Ga0207647_10027683	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3692	Open in IMG/M
3300025910\|Ga0207684_10345377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1281	Open in IMG/M
3300025937\|Ga0207669_10785147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	789	Open in IMG/M
3300027056\|Ga0209879_1061717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300027068\|Ga0209898_1040642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	601	Open in IMG/M
3300027163\|Ga0209878_1003125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2418	Open in IMG/M
3300027332\|Ga0209861_1004764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2038	Open in IMG/M
3300027407\|Ga0207520_100616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	824	Open in IMG/M
3300027511\|Ga0209843_1006505	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2644	Open in IMG/M
3300027543\|Ga0209999_1045875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	822	Open in IMG/M
3300027650\|Ga0256866_1008105	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2593	Open in IMG/M
3300027650\|Ga0256866_1176562	Not Available	578	Open in IMG/M
3300027695\|Ga0209966_1051698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	875	Open in IMG/M
3300027713\|Ga0209286_1005035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4495	Open in IMG/M
3300027717\|Ga0209998_10057174	Not Available	913	Open in IMG/M
3300027873\|Ga0209814_10029455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	2257	Open in IMG/M
3300027955\|Ga0209078_1060012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1114	Open in IMG/M
3300027956\|Ga0209820_1080025	Not Available	879	Open in IMG/M
3300027957\|Ga0209857_1000677	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7885	Open in IMG/M
3300028722\|Ga0307319_10015224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2348	Open in IMG/M
3300028803\|Ga0307281_10330516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	573	Open in IMG/M
3300028809\|Ga0247824_10799293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300028811\|Ga0307292_10117646	Not Available	1056	Open in IMG/M
3300028828\|Ga0307312_11164766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	510	Open in IMG/M
3300028878\|Ga0307278_10083946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium RBG_19FT_COMBO_70_19	1434	Open in IMG/M
3300028878\|Ga0307278_10389858	Not Available	612	Open in IMG/M
3300030006\|Ga0299907_10781977	Not Available	722	Open in IMG/M
3300030619\|Ga0268386_10120011	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	2023	Open in IMG/M
3300030903\|Ga0308206_1017339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1172	Open in IMG/M
3300031226\|Ga0307497_10118533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1058	Open in IMG/M
3300031562\|Ga0310886_10428650	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	785	Open in IMG/M
3300031847\|Ga0310907_10127473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1139	Open in IMG/M
3300031911\|Ga0307412_10210322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1484	Open in IMG/M
3300031944\|Ga0310884_10285092	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	915	Open in IMG/M
3300032017\|Ga0310899_10298593	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	747	Open in IMG/M
3300033550\|Ga0247829_10109899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2089	Open in IMG/M
3300033811\|Ga0364924_028393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1135	Open in IMG/M
3300034817\|Ga0373948_0039847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	979	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.32%
Host-Associated	Host-Associated	25.68%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.76%
Plants	Host-Associated → Plants	25.68%
Aquatic	Environmental → Aquatic	17.57%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	16.22%
Freshwater	Environmental → Aquatic → Freshwater	11.49%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.46%
Sediment	Environmental → Aquatic → Sediment	6.08%
Cave	Environmental → Terrestrial → Cave	0.68%
Floodplain	Environmental → Terrestrial → Floodplain	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	41.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.19%
Sediment	Environmental → Aquatic → Freshwater → Sediment	10.81%
Sand	Environmental → Terrestrial → Soil → Sand	9.46%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.08%
Loam	Environmental → Terrestrial → Soil → Loam	4.05%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.03%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.19%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	10.81%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	8.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.76%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.08%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.05%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.03%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.03%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.68%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	0.68%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.68%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.68%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.19%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.49%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	8.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	6.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.76%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	4.05%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	4.05%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	4.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.05%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	4.05%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.03%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.03%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.35%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.35%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.35%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.68%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.68%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.68%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.68%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.68%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.68%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.68%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.68%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.68%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.68%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2067725002	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009166	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300009812	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009819	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_40_50	Environmental	Open in IMG/M
3300009823	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011412	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT620_2	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012159	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT500_2	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012904	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S029-104C-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018056	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redo	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027163	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_40_50 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027407	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A5-12 (SPAdes)	Environmental	Open in IMG/M
3300027511	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027543	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)	Host-Associated	Open in IMG/M
3300027650	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeq	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027717	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PM (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027955	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027956	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)	Environmental	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028803	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300030619	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (Novaseq)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300033811	Sediment microbial communities from East River floodplain, Colorado, United States - 28_j17	Environmental	Open in IMG/M
3300034817	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICC_03144130	2067725002	Soil	VETVTYPSHEYHDHEPEPSSSWTGYAAIKYTAIVVIVLAILAFLAWYIVPAFNN
KansclcFeb2_02447440	2124908045	Soil	MTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVIIVLAILAFLAWYIVPAFN
KansclcFeb2_14660430	2124908045	Soil	MSHPSSEFHEHDPEPGSGWTGYAAIKYTAIVIIVLAILAFLAW
deepsgr_02698330	2199352025	Soil	MTHPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
ICChiseqgaiiFebDRAFT_113873742	3300000363	Soil	VTYPSHEYHDHEPEPSSSWTGYAAIKYTAIVVIVLAILAFLAWYIVPAFNN*
JGI10213J12805_100239563	3300000858	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPAFD*
JGI10213J12805_101819982	3300000858	Soil	MSMSHQNTEYHEHEPDHGSMTGFAAIKYTAIVVIVLAILAFLAWYVIPKF*
JGI11615J12901_116396511	3300000953	Soil	MSHPSTEYHEHPSTEYHEHDPEPGSGLAGYAAIKYTAIVVIVLAILAFLAWYVIPKLP*
JGI10216J12902_1001300802	3300000956	Soil	MTYPSHEYHEHNPEPSSGRTGYPAIRYTAIVLIVLTILALLVWYFVPAFNNSP*
JGI10216J12902_1004348002	3300000956	Soil	MTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVIIVLAILAFLAWYIVPAFN*
JGI10216J12902_1038396763	3300000956	Soil	MSDHHEYVEHPMTHELEHGSWTGYAAITYTAIVIIVLAIPAFLAWYVVPKLP*
JGI25405J52794_100965702	3300003911	Tabebuia Heterophylla Rhizosphere	MTYPSHEYHDHDPEPTSGWTGFAAIKYTAIVIIVLAILAFLAWYVVPAFNN*
Ga0062593_1002176342	3300004114	Soil	MSDGHIHSPEPESSSLTGFAAIKYTAIVVIVLAILAFVAWYIVPAFR*
Ga0062593_1012383612	3300004114	Soil	MSHPSTEYHEHDPEPGSGLAGYAAIKYSAIVIIVLAILGFLAWYIVPKLP*
Ga0062590_1025669972	3300004157	Soil	MSDDHTHSPEPESSSLAGYAAIKYTAIVIIVLAILAFLAWYIVP
Ga0062591_1009153331	3300004643	Soil	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAI
Ga0062591_1012780011	3300004643	Soil	MTYPSHEYREPDPEPSSSWTGFAAIKYTAIVVIVLAILAFLAWYVVPAFNN*
Ga0065705_111235362	3300005294	Switchgrass Rhizosphere	MTHPSYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0068868_1009581073	3300005338	Miscanthus Rhizosphere	MSDDHTHSPEPESSSLAGYAAIKYTAIVIIVLAILAFLAWDIVPAFD*
Ga0070675_1001225602	3300005354	Miscanthus Rhizosphere	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPKF*
Ga0070703_100084343	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPNYEYHDNDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0066905_1008256003	3300005713	Tropical Forest Soil	MRPREVATMTYPSHEYHEREPEPSSGWTGYAAIKYTAIVIIVLAILAFLAWYIVPAFNN*
Ga0066905_1009453432	3300005713	Tropical Forest Soil	CRGRTAVLEVETMSHPSTEYHEHDPEPGSAMTGYAAIKYTAIVIIVLAILAFLAWYIVPKLP*
Ga0066905_1022588752	3300005713	Tropical Forest Soil	MSHPSYDYHEHDPEPGSGMTGFAAIKYTAIVVIVLAILAFL
Ga0068862_1001849201	3300005844	Switchgrass Rhizosphere	GGPIMTHPNYEYHDNDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0081455_100125052	3300005937	Tabebuia Heterophylla Rhizosphere	MTYPSHEYHDHEPEPSSGWTGFAAIKYTAIVIIVLAILAFLAWYIVPAFNN*
Ga0081455_100193724	3300005937	Tabebuia Heterophylla Rhizosphere	MSHPSTEYHEHDPEPGSGLAGYAAIKYTAIVVIVLAILAFLAWYVIPKLP*
Ga0081455_100324147	3300005937	Tabebuia Heterophylla Rhizosphere	MTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVIIVLAILAFLAWYIVPAFNN*
Ga0081455_101455874	3300005937	Tabebuia Heterophylla Rhizosphere	MSHPSYDYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYII
Ga0081455_104301482	3300005937	Tabebuia Heterophylla Rhizosphere	MSDGHNHSPEPESSSPAGFAAIKYTAIVIIVLAILAFIAWYIIPAFN*
Ga0075417_100298081	3300006049	Populus Rhizosphere	MRPPEVETMTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVVIVLAILAFLAWYIVPAFNN*
Ga0075432_100723512	3300006058	Populus Rhizosphere	MRPPEVETMTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVVIVLAILAFLAWYVVPAFNN*
Ga0075432_102307131	3300006058	Populus Rhizosphere	EVETMTYPSHDYRGPDPEPTSGWTGFAAIKYTAIVIIVLAILAFLAWYVVPAFNN*
Ga0074051_100092729	3300006572	Soil	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLASLAFLAWYIVPAID*
Ga0074048_101237047	3300006581	Soil	MSHPSYEYHEHDPEPSSGLTGYAAIKYTAIVIIVLASLAFLAWYIVPAID*
Ga0074048_133199372	3300006581	Soil	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLAIPAFLAWYIVPAFD*
Ga0075428_1000687204	3300006844	Populus Rhizosphere	MTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVVIVLAILAFLAWYIVPAFNN*
Ga0075428_1000802818	3300006844	Populus Rhizosphere	MTDGHSHSPDRSLLVPPDAAIKYTAIVIIVLAILAFIAWYIIPAFN*
Ga0075428_1003608554	3300006844	Populus Rhizosphere	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPAFD*
Ga0075428_1006595803	3300006844	Populus Rhizosphere	MSDEHTHSPEPESSGLAGYAAIKYSAIVIIVLAILAFIAWYVIPAFNN*
Ga0075428_1013547992	3300006844	Populus Rhizosphere	TMSHPSYDYHEHDPEPGSGLTGFAAIKYTAIVIIVLAILAFAAWYVIPAFD*
Ga0075421_1002409361	3300006845	Populus Rhizosphere	MSHPSYDYHEHDPEPGSGLTGFAAIKYTAIVIIVLAILAFAAWYVIPAFD*
Ga0075431_1001593315	3300006847	Populus Rhizosphere	VMSDEHTHSPEPESSGLAGYAAIKYSAIVIIVLAILAFIAWYVIPAFNN*
Ga0075431_1007464531	3300006847	Populus Rhizosphere	VTYPSHEYHDHEPEPSSSWTGYAAIKYTAIVVIVLAILAFLAWYV
Ga0075419_101255854	3300006969	Populus Rhizosphere	MRPPEVETMTYPSHEYHDHEPEPSSSWTGYAAIKYTAIVVIVLAILAFLAWYVVP
Ga0105679_108426921	3300007790	Soil	MPEEDEMTSSHTHQPATPEPESGWTGYAAVKYTAIVVIVLAILAFLAWYVIPAFDRA*
Ga0105251_100130225	3300009011	Switchgrass Rhizosphere	MSDDHTHSPEPESSSLAGYAAIKYTAIVIIVLAILAFLAWYFVPAFD*
Ga0105093_109814202	3300009037	Freshwater Sediment	MTHHVEEEYHSHSAPAEPGSGLAGYAAIKYTAIVVIVLAILAFLAWYVIPRF*
Ga0105095_100149006	3300009053	Freshwater Sediment	MANENYHTHNTPTEPDSGLTGYAAIKYTAIVVIVLAILAFLAWYVIPKF*
Ga0105107_101727654	3300009087	Freshwater Sediment	MANEEYHTHNTPTEPDSGLTGYAAIKYTAIVVIVLAILAFLAWYVIPKF*
Ga0111539_102139593	3300009094	Populus Rhizosphere	MSVDHTHSPEPESSGLTGYAAIKYTAIVIIVLAILAFLAWYIIP
Ga0111539_123110942	3300009094	Populus Rhizosphere	MTHPNYEYHDHDPEPGSGLAGYSAIKYTAIVIIVLAILAFLAWYIIPAFD*
Ga0075418_109993921	3300009100	Populus Rhizosphere	HSPEPESSGLTGYAAIKYTAIVIIVLAIPAFLAWYIIPAFD*
Ga0111538_103341475	3300009156	Populus Rhizosphere	MTHPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIIPAFD*
Ga0105092_105946851	3300009157	Freshwater Sediment	MSDDHTHSPEPESSSLAGDAAIKYSAIVIIVLAILAFLAWYIVPKFN*
Ga0105092_108822521	3300009157	Freshwater Sediment	MSDDHTHSPEPESSGLAGYAAIKYSAIVIIVLAILAFIAWYVIPAFN*
Ga0105100_1000955412	3300009166	Freshwater Sediment	MANENYHTHNTPTEPDSGLTGYAAIKYTAIVVIVLAILAFLAWYVI
Ga0105100_100547865	3300009166	Freshwater Sediment	MTNHVEEEYHSHGAPAEPGSGLAGYAAIKYTAIVVIVLAILAFLAWYVIP
Ga0105241_114496121	3300009174	Corn Rhizosphere	PSYEYHDHDPEPGSGLTGFAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0105249_114152021	3300009553	Switchgrass Rhizosphere	MSEDHTHNPEPESAGLAGYAAIKYTAIVIIVLAILAFLAWYVIPAFNN*
Ga0126307_100073324	3300009789	Serpentine Soil	VEIMSHPSYEYHEHDPEPGSGTTGFAAIKYSAIMIIVLAILAFLAWYVVPKF*
Ga0126307_105937041	3300009789	Serpentine Soil	MSDDHTHSPEPESSGLAGYAAIKYTAIVIMVLAILAFLAWYIVPKFN*
Ga0105088_10272642	3300009810	Groundwater Sand	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0105067_10061373	3300009812	Groundwater Sand	YEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILTFLAWYIVPKF*
Ga0105070_10414831	3300009815	Groundwater Sand	MSHPSTEFHEHDPEPGSAWTGYAAIKYSAIVIIVLAILAFLAWY
Ga0105087_11235621	3300009819	Groundwater Sand	MSHPSTEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILGFLAWYIVPKLP*
Ga0105078_10489972	3300009823	Groundwater Sand	MSDDHTHSPEPESSSLAGYAAIKYTAIVIIVLAILAFL
Ga0105068_10152613	3300009836	Groundwater Sand	MSHPSTEFHEHDPEPGSAWTGYAAIKYSAIVIIVLAILAFLAWYIDPKFD*
Ga0105068_10185383	3300009836	Groundwater Sand	SHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYIVPKF*
Ga0126313_104003882	3300009840	Serpentine Soil	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYVVPNF*
Ga0126305_102808822	3300010036	Serpentine Soil	VEIMSHPSYEYHEHDPEPGSGTTGFAAIKYSAIVIIVLAILAFLAWYVVPKF*
Ga0126312_101875502	3300010041	Serpentine Soil	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYVVPKF*
Ga0126314_105167891	3300010042	Serpentine Soil	GVMSDDHTHSPEPESSSLAGFAAIKYTAIVIMVLAILAFLAWYIVPKFN*
Ga0126319_10822431	3300010147	Soil	GASSGGGAIMTHPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIIPAFD*
Ga0126377_117603781	3300010362	Tropical Forest Soil	MSEQHTHSPEPESESSSLTGYAAIKYTAIVIIVLAILAFLAWYVVPAFH*
Ga0126377_119671231	3300010362	Tropical Forest Soil	STEYHEHDPEPGSAMTGYAAIKYTAIVIIVLAILAFLAWYIVPKLP*
Ga0134122_108235261	3300010400	Terrestrial Soil	MTHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLAILAFLAW
Ga0137424_10256211	3300011412	Soil	MSHPSEYHEHDPEPGSGLTGFAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0120191_100403592	3300012022	Terrestrial	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILA
Ga0137344_10335812	3300012159	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPAFE*
Ga0137372_107737691	3300012350	Vadose Zone Soil	MSDDHTHSPEPESSSLVGYAAIKYTAIVIIVLSILAFLAWYIVPRLP*
Ga0137367_100934592	3300012353	Vadose Zone Soil	MSRPSTEYHEHDPEPGSGWTGYAAIKYTAIVIIVLSILAFLAWYIVPKFD*
Ga0137367_101769934	3300012353	Vadose Zone Soil	MSDDDTHSPEPESSSLVGYAAIKYTAIVIIVLSILAFLAWYIVPRLP*
Ga0137373_102361904	3300012532	Vadose Zone Soil	ITSTARDDESFGLAGYGAIRYTAIVIIVLAILAILAILAFLAWYIVPAVD*
Ga0157282_104039581	3300012904	Soil	MVRPREVENMSHPSYEYHEPDPEPGSGLTGYAAIKYTAIVIIVLAILAFL
Ga0157301_100471512	3300012911	Soil	MSDGHIHSPEPESSSLTGFAAIKYTAIVVIVMAILAFVAWYIVPAFR*
Ga0163162_107620253	3300013306	Switchgrass Rhizosphere	GAIMTHPSYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD*
Ga0132258_115123232	3300015371	Arabidopsis Rhizosphere	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPKF*
Ga0190266_111614761	3300017965	Soil	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLAILAFLAWYVIP
Ga0184626_100132792	3300018053	Groundwater Sediment	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPAFD
Ga0184621_100008468	3300018054	Groundwater Sediment	MNEDHTHSPEPESSGLAGYSAIKYTAIVIIVLAILAFLAWYVVPAFNN
Ga0184623_100187307	3300018056	Groundwater Sediment	MTHQNMEYREHEPDQGSLTGFAAIKYTAIVVIVLAILAFLAWYVIPQFNN
Ga0184623_101219422	3300018056	Groundwater Sediment	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPAFD
Ga0184627_102496411	3300018079	Groundwater Sediment	QMSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPAFD
Ga0184628_102390031	3300018083	Groundwater Sediment	MTHPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIIPAFD
Ga0190269_102844492	3300018465	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYIVPKF
Ga0190269_119221072	3300018465	Soil	MTDDHTHSPEPELSSLAGYAAIKYTAIVIIVLAILAFLAWYIVPKFN
Ga0190270_100262937	3300018469	Soil	MSDEHTHSPEPESSGLAGYAAIKYSAIVIIVLAILAFIAWYVIPAFNN
Ga0190274_100034434	3300018476	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYVIPKF
Ga0184648_13317443	3300019249	Groundwater Sediment	MTHPSYEYHEHDPEPGAGLTGYAAIKYTAIVIIVLAILAFLAWYIIPAFD
Ga0184648_14473601	3300019249	Groundwater Sediment	SDLGRWDQMSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPAFD
Ga0184646_13172723	3300019259	Groundwater Sediment	GAVWEVDTMTHQNMEYHEHEHEPDQGSLTGFAAIKYTAIVVIVLAILAFLAWYVIPQFNN
Ga0187892_100249577	3300019458	Bio-Ooze	MTHTDTEYRQHEPDQGSLTGFAAIKYTAIVVIVLAILAFLAWYVIPQFKN
Ga0193739_10079371	3300020003	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLA
Ga0193738_10093443	3300020020	Soil	MENHPHEPEEKGSLTGYAAIKYTAIVVIVIAILVFLAAYVLPLVRE
Ga0210379_100436063	3300021081	Groundwater Sediment	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVMIVLAILAFLAWYIIPAFD
Ga0210379_101016772	3300021081	Groundwater Sediment	MSHPSYQYHEHDPEPGSGMTAFAAIKYTAIVIIVLSILAFLAWYIIPAFD
Ga0210380_103267081	3300021082	Groundwater Sediment	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVMIVLAILAFLAWYIVPAFD
Ga0224452_10522372	3300022534	Groundwater Sediment	MSEDHTHSPEPESSGLAGYSAIKYTAIVIIVLAILAFLAWYVVPAFNN
Ga0207653_1000068615	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPNYEYHDNDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0207647_100276833	3300025904	Corn Rhizosphere	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPKF
Ga0207684_103453774	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MTHPSYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0207669_107851472	3300025937	Miscanthus Rhizosphere	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVVIVLAILAFIAWVILPRLTG
Ga0209879_10617171	3300027056	Groundwater Sand	MSHPSTEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYIVPKF
Ga0209898_10406421	3300027068	Groundwater Sand	YEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILTFLAWYIVPKF
Ga0209878_10031254	3300027163	Groundwater Sand	MSHPSTEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPKF
Ga0209861_10047642	3300027332	Groundwater Sand	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYIVPKF
Ga0207520_1006162	3300027407	Soil	MSHPSYEYHEHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYVVPAFD
Ga0209843_10065051	3300027511	Groundwater Sand	ATSWRWDHMSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYVVPAFD
Ga0209999_10458751	3300027543	Arabidopsis Thaliana Rhizosphere	WEVEIMSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLAILGFLAWYIVPKLP
Ga0256866_10081053	3300027650	Soil	MSDEHTHSPEPESPSLAGYAAIKYSAIVIIVLAILAFIAWYVIPRFD
Ga0256866_11765621	3300027650	Soil	THSPEPESSGLAGYAAIKYTAIVIIVLAILAFIAWYVIPAFNN
Ga0209966_10516982	3300027695	Arabidopsis Thaliana Rhizosphere	VENMSHPSTEYHEHDPEPGSGLAGYAAIKYSAIVIIVLAILGFLAWYIVPKLP
Ga0209286_10050355	3300027713	Freshwater Sediment	MANENYHTHNTPTEPDSGLTGYAAIKYTAIVVIVLAILAFLAWYVIPKF
Ga0209998_100571742	3300027717	Arabidopsis Thaliana Rhizosphere	MSHPSTEYHEHDPEPGSGLAGYAAIKYSAIVIIVLAILGFLAWYIVPKLP
Ga0209814_100294554	3300027873	Populus Rhizosphere	MRPPEVETMTYPSHEYHEHEPEPSSGWTGYAAIKYTAIVVIVLAILAFLAWYIVPAFNN
Ga0209078_10600122	3300027955	Freshwater Sediment	MTHHVEEEYHSHGAPAEPGSGLAGYAAIKYTAIVVIVLAILAFLAWYVIPKF
Ga0209820_10800252	3300027956	Freshwater Sediment	MSDDHTHSPEPESSGLAGYAAIKYTAIVIIVLAILAFIAWYVIPAFNN
Ga0209857_10006772	3300027957	Groundwater Sand	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0307319_100152241	3300028722	Soil	HRAVREVEIMSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYIVPKF
Ga0307281_103305162	3300028803	Soil	MSHPSYQYHEHDPEPGSGMTGFAAIKYTAIVIIVLSILAFLAWYIIPA
Ga0247824_107992931	3300028809	Soil	MSHPSYEYHEHDPEPGSGMTGFAAIKYTAIVIIVLAILAF
Ga0307292_101176463	3300028811	Soil	TINTHSPEPESSGLAGYAAIKYTAIVVIVLAILAFLAWYIVPAFD
Ga0307312_111647662	3300028828	Soil	MSHPSYEYHEHDPEPGSGLTGYAAIKYTAIVIIVLAILAFLAWYVVP
Ga0307278_100839463	3300028878	Soil	MSDDQTHSPEPESSGLTGYAAIKYTAIVIIVLAILAWYIVPAFD
Ga0307278_103898581	3300028878	Soil	MNEDHTHSPEPESSGLAGYAAIKYTAIVVIVLAILAFLAWYIVPAF
Ga0299907_107819771	3300030006	Soil	MSEEHTHSPEPESSGLAGYAAIKYTAIVIIVLAILAFIAWYVIPAFN
Ga0268386_101200114	3300030619	Soil	MNEEHTHSPEPESSGLAGYAAIKYTAIVIIVLAILAF
Ga0308206_10173391	3300030903	Soil	VEIMSHPSYEYHEHDPEPGSGMTGFAAIKYSAIVIIVLAILAFLAWYIVPKF
Ga0307497_101185331	3300031226	Soil	MTHPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLA
Ga0310886_104286501	3300031562	Soil	MTHPSYEYHDHDPEPGAGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0310907_101274731	3300031847	Soil	GPIMTHPNYEYHDNDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0307412_102103222	3300031911	Rhizosphere	MSHPSYEYHEHDPEPGSGTTGFAAIKYSAIVIIVLAILAFLAWYVVPKF
Ga0310884_102850923	3300031944	Soil	THPNYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0310899_102985931	3300032017	Soil	GGAIMTHPSYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVPAFD
Ga0247829_101098992	3300033550	Soil	MSHPSYEYHEHDPEPGSGMAGFAAIKYTAIVIIVLAILAFLAWYIVPKF
Ga0364924_028393_201_353	3300033811	Sediment	MTHPETQNREHEPDQGSLTGFAAIKYTAIVVIVLAILAFLAWYVIPQFNN
Ga0373948_0039847_1_141	3300034817	Rhizosphere Soil	MTHPSYEYHDHDPEPGSGLAGYAAIKYTAIVIIVLAILAFLAWYIVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F048297

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences