NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047814

Metagenome / Metatranscriptome Family F047814

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047814
Family Type Metagenome / Metatranscriptome
Number of Sequences 149
Average Sequence Length 41 residues
Representative Sequence KMLSSYIDNHNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Number of Associated Samples 124
Number of Associated Scaffolds 149

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 97.99 %
% of genes from short scaffolds (< 2000 bps) 89.93 %
Associated GOLD sequencing projects 119
AlphaFold2 3D model prediction Yes
3D model pTM-score0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.658 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(20.805 % of family members)
Environment Ontology (ENVO) Unclassified
(35.570 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.034 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 53.62%    β-sheet: 0.00%    Coil/Unstructured: 46.38%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.52
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 149 Family Scaffolds
PF13180PDZ_2 15.44
PF13365Trypsin_2 14.09
PF00595PDZ 6.71
PF13561adh_short_C2 3.36
PF00271Helicase_C 3.36
PF02272DHHA1 1.34
PF12812PDZ_1 1.34
PF07687M20_dimer 1.34
PF01841Transglut_core 1.34
PF16798DUF5069 0.67
PF15902Sortilin-Vps10 0.67
PF13469Sulfotransfer_3 0.67
PF01797Y1_Tnp 0.67
PF02913FAD-oxidase_C 0.67
PF00694Aconitase_C 0.67
PF05973Gp49 0.67
PF01266DAO 0.67
PF11138DUF2911 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 149 Family Scaffolds
COG0277FAD/FMN-containing lactate dehydrogenase/glycolate oxidaseEnergy production and conversion [C] 0.67
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 0.67
COG3657Putative component of the toxin-antitoxin plasmid stabilization moduleDefense mechanisms [V] 0.67
COG4679Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin systemDefense mechanisms [V] 0.67

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.66 %
UnclassifiedrootN/A1.34 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459005|F1BAP7Q01DPXGQAll Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium508Open in IMG/M
3300000955|JGI1027J12803_100489830All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium500Open in IMG/M
3300000956|JGI10216J12902_112192663All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1298Open in IMG/M
3300002245|JGIcombinedJ26739_100171810All Organisms → cellular organisms → Bacteria2050Open in IMG/M
3300002914|JGI25617J43924_10114022All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300005167|Ga0066672_10274545All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes1090Open in IMG/M
3300005179|Ga0066684_10778861All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300005332|Ga0066388_108773674All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300005536|Ga0070697_100096203All Organisms → cellular organisms → Bacteria2456Open in IMG/M
3300005543|Ga0070672_102078604All Organisms → cellular organisms → Bacteria512Open in IMG/M
3300005548|Ga0070665_101265933All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300005556|Ga0066707_10106057All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes1732Open in IMG/M
3300005556|Ga0066707_10711645All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium628Open in IMG/M
3300005557|Ga0066704_10295282All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes1096Open in IMG/M
3300005558|Ga0066698_10524801All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia804Open in IMG/M
3300005559|Ga0066700_10205758All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes1361Open in IMG/M
3300005559|Ga0066700_11026786All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300005561|Ga0066699_10932250All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300005574|Ga0066694_10435950All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005575|Ga0066702_10052486All Organisms → cellular organisms → Bacteria2196Open in IMG/M
3300005575|Ga0066702_10482486All Organisms → cellular organisms → Bacteria757Open in IMG/M
3300005598|Ga0066706_11364861All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300005764|Ga0066903_106028008All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300005921|Ga0070766_11129502All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300006031|Ga0066651_10388747All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300006175|Ga0070712_100427473All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1099Open in IMG/M
3300006791|Ga0066653_10234516All Organisms → cellular organisms → Bacteria934Open in IMG/M
3300006797|Ga0066659_11652425All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium539Open in IMG/M
3300006797|Ga0066659_11702313All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium532Open in IMG/M
3300006800|Ga0066660_10033793All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes3176Open in IMG/M
3300006800|Ga0066660_10354553All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes1193Open in IMG/M
3300006854|Ga0075425_101776179All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300007788|Ga0099795_10619561All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300009012|Ga0066710_101639683All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia983Open in IMG/M
3300009012|Ga0066710_102767214All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium696Open in IMG/M
3300009012|Ga0066710_104606394All Organisms → cellular organisms → Bacteria515Open in IMG/M
3300009088|Ga0099830_10221136All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1489Open in IMG/M
3300009090|Ga0099827_10876057All Organisms → cellular organisms → Bacteria778Open in IMG/M
3300009098|Ga0105245_11914896All Organisms → cellular organisms → Bacteria646Open in IMG/M
3300009137|Ga0066709_100897573All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1291Open in IMG/M
3300009137|Ga0066709_104480964All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300009137|Ga0066709_104593883All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia505Open in IMG/M
3300009143|Ga0099792_10872294All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium594Open in IMG/M
3300009792|Ga0126374_11002401All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium655Open in IMG/M
3300010301|Ga0134070_10152241All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium830Open in IMG/M
3300010322|Ga0134084_10137809All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium811Open in IMG/M
3300010322|Ga0134084_10141530All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300010322|Ga0134084_10181396All Organisms → cellular organisms → Bacteria726Open in IMG/M
3300010325|Ga0134064_10045440All Organisms → cellular organisms → Bacteria1333Open in IMG/M
3300010325|Ga0134064_10176594All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium753Open in IMG/M
3300010333|Ga0134080_10640793All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia521Open in IMG/M
3300010373|Ga0134128_11318878All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia795Open in IMG/M
3300010401|Ga0134121_10291863Not Available1441Open in IMG/M
3300012096|Ga0137389_10975369All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300012096|Ga0137389_11066872All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia692Open in IMG/M
3300012198|Ga0137364_10507607All Organisms → cellular organisms → Bacteria907Open in IMG/M
3300012198|Ga0137364_11409612All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia516Open in IMG/M
3300012200|Ga0137382_10064669All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria2326Open in IMG/M
3300012201|Ga0137365_10147442All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1768Open in IMG/M
3300012209|Ga0137379_11071528All Organisms → cellular organisms → Bacteria711Open in IMG/M
3300012211|Ga0137377_11212289All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia684Open in IMG/M
3300012285|Ga0137370_10032554All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria2719Open in IMG/M
3300012285|Ga0137370_10957195All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium528Open in IMG/M
3300012349|Ga0137387_10154591All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1635Open in IMG/M
3300012349|Ga0137387_11140560All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300012357|Ga0137384_10833006All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300012362|Ga0137361_11351215All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium636Open in IMG/M
3300012362|Ga0137361_11748310All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia541Open in IMG/M
3300012685|Ga0137397_10710890All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium746Open in IMG/M
3300012898|Ga0157293_10223565All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium581Open in IMG/M
3300012914|Ga0157297_10133871All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia788Open in IMG/M
3300012917|Ga0137395_10144590All Organisms → cellular organisms → Bacteria1623Open in IMG/M
3300012923|Ga0137359_10595911All Organisms → cellular organisms → Bacteria970Open in IMG/M
3300012927|Ga0137416_10189764All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1641Open in IMG/M
3300012927|Ga0137416_11993382All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes532Open in IMG/M
3300012929|Ga0137404_10836970All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia837Open in IMG/M
3300012944|Ga0137410_11290302All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300012955|Ga0164298_11601220All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium513Open in IMG/M
3300012971|Ga0126369_10656760All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1123Open in IMG/M
3300012977|Ga0134087_10119553All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1120Open in IMG/M
3300012977|Ga0134087_10748783All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300012984|Ga0164309_10531641All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia906Open in IMG/M
3300012984|Ga0164309_10952426All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium704Open in IMG/M
3300013296|Ga0157374_11282222All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300014488|Ga0182001_10512026All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium555Open in IMG/M
3300015357|Ga0134072_10119914All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300015359|Ga0134085_10045199All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1751Open in IMG/M
3300015371|Ga0132258_12720735All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1234Open in IMG/M
3300015374|Ga0132255_104389994All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium598Open in IMG/M
3300017654|Ga0134069_1095000All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia969Open in IMG/M
3300017654|Ga0134069_1290151All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia577Open in IMG/M
3300017659|Ga0134083_10012703All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae2853Open in IMG/M
3300018071|Ga0184618_10102419All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1124Open in IMG/M
3300018073|Ga0184624_10290031All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium734Open in IMG/M
3300018433|Ga0066667_10195364All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1481Open in IMG/M
3300018920|Ga0190273_10396421All Organisms → cellular organisms → Bacteria969Open in IMG/M
3300019361|Ga0173482_10601601All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium552Open in IMG/M
3300019877|Ga0193722_1038207All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1233Open in IMG/M
3300019883|Ga0193725_1012905All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae2350Open in IMG/M
3300019883|Ga0193725_1093526All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium718Open in IMG/M
3300019885|Ga0193747_1101212All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300019889|Ga0193743_1162200All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium755Open in IMG/M
3300020015|Ga0193734_1002428All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae3300Open in IMG/M
3300021080|Ga0210382_10228555All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium812Open in IMG/M
3300021344|Ga0193719_10053238All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1754Open in IMG/M
3300021344|Ga0193719_10318573All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium650Open in IMG/M
3300021560|Ga0126371_10798478All Organisms → cellular organisms → Bacteria1090Open in IMG/M
3300022756|Ga0222622_10346843All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1034Open in IMG/M
3300023058|Ga0193714_1018005All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1051Open in IMG/M
3300025910|Ga0207684_11325825All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium592Open in IMG/M
3300025923|Ga0207681_10002222All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia12352Open in IMG/M
3300025927|Ga0207687_10963297All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium731Open in IMG/M
3300025928|Ga0207700_11708644All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia555Open in IMG/M
3300025929|Ga0207664_10024478All Organisms → cellular organisms → Bacteria4537Open in IMG/M
3300025944|Ga0207661_10080818All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus2683Open in IMG/M
3300026142|Ga0207698_12735423All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium502Open in IMG/M
3300026295|Ga0209234_1137948All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300026314|Ga0209268_1179135All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia523Open in IMG/M
3300026324|Ga0209470_1207805All Organisms → cellular organisms → Bacteria821Open in IMG/M
3300026332|Ga0209803_1165734All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium842Open in IMG/M
3300026332|Ga0209803_1369240All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia500Open in IMG/M
3300026334|Ga0209377_1065031All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1585Open in IMG/M
3300026498|Ga0257156_1050082All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia859Open in IMG/M
3300026523|Ga0209808_1285535All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300026527|Ga0209059_1173770All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium755Open in IMG/M
3300026529|Ga0209806_1154516All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium870Open in IMG/M
3300026530|Ga0209807_1057340All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium1777Open in IMG/M
3300026538|Ga0209056_10208044All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1425Open in IMG/M
3300026557|Ga0179587_10865329All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium596Open in IMG/M
3300027587|Ga0209220_1099531All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300027635|Ga0209625_1095279All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium667Open in IMG/M
3300027678|Ga0209011_1011309Not Available2977Open in IMG/M
3300027882|Ga0209590_10016107All Organisms → cellular organisms → Bacteria3658Open in IMG/M
3300028707|Ga0307291_1002842All Organisms → cellular organisms → Bacteria3755Open in IMG/M
3300028718|Ga0307307_10300171All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium517Open in IMG/M
3300028784|Ga0307282_10073919All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1553Open in IMG/M
3300028793|Ga0307299_10393858All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium519Open in IMG/M
3300028796|Ga0307287_10380421All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia532Open in IMG/M
3300028884|Ga0307308_10364654All Organisms → cellular organisms → Bacteria692Open in IMG/M
3300030945|Ga0075373_11598543All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia768Open in IMG/M
3300031231|Ga0170824_101829323All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium816Open in IMG/M
3300031469|Ga0170819_17314381All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1243Open in IMG/M
3300031573|Ga0310915_10975688All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium592Open in IMG/M
3300031719|Ga0306917_10420814All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300032068|Ga0318553_10700434All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300032076|Ga0306924_12450457All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium525Open in IMG/M
3300032770|Ga0335085_11395466All Organisms → cellular organisms → Bacteria735Open in IMG/M
3300033412|Ga0310810_10393668All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1434Open in IMG/M
3300033412|Ga0310810_10579059All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia1086Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil20.81%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil18.79%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil16.11%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil9.40%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil6.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.68%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.68%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.68%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.01%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.34%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.34%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.34%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.34%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.34%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.34%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.34%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere1.34%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.67%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.67%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.67%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.67%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.67%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.67%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459005Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010301Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014488Bulk soil microbial communities from Mexico - San Felipe (SF) metaGEnvironmentalOpen in IMG/M
3300015357Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300015359Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300017654Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300017659Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019877Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m1EnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300019885Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020015Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1EnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300023058Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2m1EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025944Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026324Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026334Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)EnvironmentalOpen in IMG/M
3300026498Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-AEnvironmentalOpen in IMG/M
3300026523Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157 (SPAdes)EnvironmentalOpen in IMG/M
3300026527Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028707Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148EnvironmentalOpen in IMG/M
3300028718Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_194EnvironmentalOpen in IMG/M
3300028784Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121EnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028796Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_141EnvironmentalOpen in IMG/M
3300028884Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195EnvironmentalOpen in IMG/M
3300030945Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA10 EcM (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
E41_072741302170459005Grass SoilYIDNQNFESVRASANRVLDALWEMLSGVCRRHAIAC
JGI1027J12803_10048983013300000955SoilDDHNFESVKVSVNRVLDALWELLSGVCRRHAIAC*
JGI10216J12902_11219266323300000956SoilREMLNRYIDDHNFESVRVSVNRVLEALWEMLSGVCRRNTIAC*
JGIcombinedJ26739_10017181013300002245Forest SoilAAEREMLNSYIDNHNIDNVRASVRRVLDALWEMLSGVCRRHAIAC*
JGI25617J43924_1011402223300002914Grasslands SoilEREMLGSYVDDRNIDNVRTSVRRVLDALWQMLSGVCRRHAIAC*
Ga0066672_1027454513300005167SoilRNMLAAYIDNHNFESVKASVTRVLDALWDLLSGVCRRHAIAC*
Ga0066684_1077886123300005179SoilRKLLGAYIDNGNFESVRASVNGILDALWEMLSGVCRRHAIAC*
Ga0066388_10877367423300005332Tropical Forest SoilKMLADKIDNRNFESVRLSVNRVVDALWETLSGVCRRHAIAC*
Ga0070697_10009620333300005536Corn, Switchgrass And Miscanthus RhizosphereLSSYIDNQNIDNVRASVRRVLEALWEMLSGVCRRHAIAC*
Ga0070672_10207860413300005543Miscanthus RhizosphereSAAEQRLLGGYVDNQNFESVRASVNRVLDALWEMLSGVCRRHAIAC*
Ga0070665_10126593313300005548Switchgrass RhizosphereAEQRLLGGYVGNQNFEPVRASLNRVLDALWEMLSGVCRRHAIAC*
Ga0066707_1010605723300005556SoilADEREMLGSYVDDRNIDNVRTSVHRVLDALWQMLSGVCRRHAIAC*
Ga0066707_1071164513300005556SoilLDAYLNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVC*
Ga0066704_1029528213300005557SoilIDNHNFESVKASVTRILDALWEMLSGVCRRHAIAC*
Ga0066698_1052480113300005558SoilMLDAYLNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVC*
Ga0066700_1020575813300005559SoilERKMLSTYVDNQNIDNVRASVQRVLDALWEMLSGVCRRHAISC*
Ga0066700_1102678623300005559SoilADEREMLGSYVDDRNIDNVRTSVRRVLDALWQMLSGVCRRHAIAC*
Ga0066699_1093225023300005561SoilIDKQNFESVKASVNRVLDALWEMLSGVCQRHAIAC*
Ga0066694_1043595013300005574SoilEHSAAERKMLESFVDKGNFKSVRASVNRVLGALWEMLSGVCQRHAIAC*
Ga0066702_1005248633300005575SoilTEREMLNRYIDDRNFESVKASVSRVLDALWEMLSGVCRRHAIAC*
Ga0066702_1048248613300005575SoilAEREMLSEYVTDANAPSVSAAVTRILDALWEMLSGVCCRHAIAC*
Ga0066706_1136486113300005598SoilRKMLAAYVDKQNFESVKASVNRVLDALWEMLSGVCRRHVIAC*
Ga0066903_10602800823300005764Tropical Forest SoilEHSATERKMMGEYIGKQNFESVRASVNRVLDALWEMLSGVCRRHAIA*
Ga0070766_1112950213300005921SoilKIDNRNIDNVRASVNRVLDALGELLSGVCRRHAIAG*
Ga0066651_1038874723300006031SoilSMLSGYVNDENAASTATAVDRVLDALWEMLSGVCRRHAIACA*
Ga0070712_10042747313300006175Corn, Switchgrass And Miscanthus RhizosphereIDNHNFESVKASVNRVLDALWEMLSGVCRRHAIA*
Ga0066653_1023451623300006791SoilREHIGNQNFESVKASVNRVLDALWEMLSGVCRRHAIAC*
Ga0066659_1165242523300006797SoilEHVGSQNLESVKASVNRVLDALWEMLSGVYRRHAIAC*
Ga0066659_1170231323300006797SoilMLESFVDKGNFKSVRASVNRVLGALWEMLSGVCQRHAIAC*
Ga0066660_1003379323300006800SoilLSTYVDNQNVDNVRASVQRVLDALWEMLSGVCRRHAIAC*
Ga0066660_1035455313300006800SoilMLGSFVDNQNVDSVRASVNRVLDALWELLSGVCRRHAIAC*
Ga0075425_10177617913300006854Populus RhizosphereAEQRLLSGYSGNQNFESVRASVNRVLDALWEMLSGVCRRHAIAC*
Ga0099795_1061956113300007788Vadose Zone SoilKMLGTYIDNHNFESVKASVTRVLDALWEMLSGVCRRHAIAC*
Ga0066710_10163968323300009012Grasslands SoilRMLDAYLNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVC
Ga0066710_10276721423300009012Grasslands SoilGYVDDQNFESVRASVHRVLDALWEMLSGVCRRHAIAC
Ga0066710_10460639413300009012Grasslands SoilLSAYIDNHNFESVKASVNRILDALWEMLSGVCRRHAIAC
Ga0099830_1022113633300009088Vadose Zone SoilSYIDNHNIDGVRVAVRRVLDALWEMLSGVCRRHAIAC*
Ga0099827_1087605713300009090Vadose Zone SoilHSAAERKMLKAYINDHNIDNMRASARRVLDAMWEMLSGVCRRHAVAC*
Ga0105245_1191489623300009098Miscanthus RhizosphereMLATQIGPDNFKPIGASVQRVLDALWEMLSGVCRRHAIAC*
Ga0066709_10089757313300009137Grasslands SoilRMLDAYLNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVC*
Ga0066709_10448096413300009137Grasslands SoilHSAAERKMLSDYVDDHNIDNVRASVRRVLDTLWEMLSGVCRRHAIAC*
Ga0066709_10459388323300009137Grasslands SoilRMLDAYLNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVY*
Ga0099792_1087229413300009143Vadose Zone SoilHVGSQNLESVKASVNRVLDALWEMLSGVCRRHAIAC*
Ga0126374_1100240123300009792Tropical Forest SoilAEQKLLGEYVGSQNFESVRASVNRVLDALWEMLSGVCRHHAIAC*
Ga0134070_1015224113300010301Grasslands SoilERKLLGAYIDNGNFESVRASVNGILDALWEMLSGVCRRHAIAC*
Ga0134084_1013780913300010322Grasslands SoilRKMLNTYVNNRNFDSVRASVNRVLDALWEMLSGVCRRHAIAC*
Ga0134084_1014153023300010322Grasslands SoilAAAERKMLSAYIDNHNFESVKASVNRILDALWEMLSGVCRRHAVAC*
Ga0134084_1018139623300010322Grasslands SoilADREHAAAERKMLSAYIDNHNFESVKASVNRILDALWEMLSGVCCRHAIAC*
Ga0134064_1004544023300010325Grasslands SoilEREMLSTYVDNQNINNVRASVQRVLDALWEMLSGVCRRHAIAC*
Ga0134064_1017659423300010325Grasslands SoilYIDNGNFESVRASVNGILDALWEMLSGVCRRHAIAC*
Ga0134080_1064079313300010333Grasslands SoilEYLNDDNAASASGAVERILNALWEMLSGVCRRHAIAC*
Ga0134128_1131887813300010373Terrestrial SoilMLGRYLDVHNFESVKVSVNRVLDALWDMLSGVCRRHAIAC*
Ga0134121_1029186313300010401Terrestrial SoilAERKMLGAFVDDQNFETVKASANRVLDALWEMLSGVCRRHAIAC*
Ga0137389_1097536913300012096Vadose Zone SoilSYIDDRNIDNVRTSVRRVLDALWQMLSGVCRRHAIAC*
Ga0137389_1106687213300012096Vadose Zone SoilKMLEPYIDNHSFESIRASVNRVLNALWEMLSGVCRRHAIA*
Ga0137364_1050760723300012198Vadose Zone SoilEREMLSQHVNDDNASSASTAVNRVLDALWEMLSGVCRRHAIACA*
Ga0137364_1140961213300012198Vadose Zone SoilAAEREMLGRYLDAHNFESVKVSVNRVLDALWDMLSGVCRRQAIAY*
Ga0137382_1006466913300012200Vadose Zone SoilHSAAEQRLLGGYIGNQNFESVRASVNRVLNALWEMLSGVCRRHAIAS*
Ga0137365_1014744223300012201Vadose Zone SoilAEREILSAHIGERNFRSVKASVNRVLDALWEMLSGVCRRHAIAC*
Ga0137379_1107152813300012209Vadose Zone SoilDNHNFEFVKASVTRVLDALWEMLSSVCRRHAIAC*
Ga0137377_1121228913300012211Vadose Zone SoilNEQNFESVKRSVNRVLDTLWEMLSGVCRRHAIVY*
Ga0137370_1003255413300012285Vadose Zone SoilREHSAAERSMLGAYVDNHSFEPLRASVNRVLDALWEMLSGVCRRHAIA*
Ga0137370_1095719523300012285Vadose Zone SoilAAERSMLSEYLTNANAAPTANAVELVLDAPWEMLSGVCRRHAIACA*
Ga0137387_1015459113300012349Vadose Zone SoilIDNRNFESVKESVNRVLSALWQMLSGVCRRHAIAC*
Ga0137387_1114056023300012349Vadose Zone SoilYIDNHNFESVKASVNRILDALWEMLSGVCRRHAIACRSISAE*
Ga0137384_1083300613300012357Vadose Zone SoilERKMLGAYIDNHNFEFVKASVTRVLDALWEMLSSVCRRHAIAC*
Ga0137361_1135121523300012362Vadose Zone SoilMLFQYVTDDNTAPIAIAVDRIVDALWEMLSGVCRRHTIAC*
Ga0137361_1174831013300012362Vadose Zone SoilMLAAYVDKQNFESVKASVNRVLDALWEMLSAVCRRHAIAC*
Ga0137397_1071089023300012685Vadose Zone SoilRYINERNFESVKASVNRTLDALWEMLSGVCRRHAIAS*
Ga0157293_1022356523300012898SoilSQHVNNDNASSASAAVDRVLDALWEMLSGVCRRHTIAC*
Ga0157297_1013387113300012914SoilQNLLGEQVDKANFDSVRASVNRILDAHWEMLSGVCRRQAIAC*
Ga0137395_1014459023300012917Vadose Zone SoilAAEREMLSTYVDNQNINNVRVSVQRVLAALWEMLSGVCRRHTIAC*
Ga0137359_1059591123300012923Vadose Zone SoilATERAMLGAYIDNKNVDNVRASVGRVLDALWEMLSGVCRRHAIVC*
Ga0137416_1018976413300012927Vadose Zone SoilDAHNFESVKVSVNRVLDALWDMLSGVCRRHAIAC*
Ga0137416_1199338223300012927Vadose Zone SoilLSQHVTDDNAAPTTNAVDRILDALWEMLSGVCRRHAIAC*
Ga0137404_1083697013300012929Vadose Zone SoilYVGNQNFEPVRASVNRVLDALWEMLSGVCRRHAIAC*
Ga0137410_1129030213300012944Vadose Zone SoilMLSGYVDDRNIDNVRASARRVLDALWEMLSGVCRRHAIAC*
Ga0164298_1160122023300012955SoilSEYVNEGNAAPVSAAVIRILDALWEMLSGVCRRHAIAC*
Ga0126369_1065676013300012971Tropical Forest SoilGYVNHDNAASAANAVDRVLDALWEMLSGVCRRHAIACG*
Ga0134087_1011955323300012977Grasslands SoilEREMLNRYIGDRNFESVKASVNRVLDALWEMLSGVCRRHAIGC*
Ga0134087_1074878313300012977Grasslands SoilSERKMLGAYIENHNFESVKASVTRVLDALWDLLSGVCRRHAIAC*
Ga0164309_1053164123300012984SoilLLGGYIGRQNFESVRASVNRVLDALCEMLSGVCRRHAIAC*
Ga0164309_1095242613300012984SoilAEQKLLGGYVGNQNFEPVRASVNRVLDSLWEMLSGVCRRHAIAC*
Ga0157374_1128222213300013296Miscanthus RhizosphereAYVNDDNFETVRSSMQSVLNALWEMLSGVCRRHAIAC*
Ga0182001_1051202613300014488SoilVNDGNAAAVKAAVTRVLDALWDLLSGVCRRHAIAC*
Ga0134072_1011991413300015357Grasslands SoilAAERKMLSTYVDNQNVDNVRASVQRVLDALWEMLSGVCRRHTIAC*
Ga0134085_1004519913300015359Grasslands SoilAERDLLNRYVNEHNFESVKASVNCVLDALWEMLSGVCRRHAIAC*
Ga0132258_1272073523300015371Arabidopsis RhizosphereSAAEQRLLGGYVGCQNVESVKASVNSVLDALWEMLSGVCHRHAIAC*
Ga0132255_10438999423300015374Arabidopsis RhizosphereEMLGEHVNSENFAKVSASVTRVLDVLWDMLSGVCRRHAIAC*
Ga0134069_109500023300017654Grasslands SoilSAAERKMLREHVGSQNLESVKASVNRVLDALWEMLSGVCRRHAIAC
Ga0134069_129015113300017654Grasslands SoilVDKQNFESVKASVNRVLEALWEMLSGVCRRHAIAC
Ga0134083_1001270313300017659Grasslands SoilAAERKMLREHVGSQNLESVKASVNRVLDALWEMLSGVCRRHAIAC
Ga0184618_1010241923300018071Groundwater SedimentYIDNNNFESVRESVHRVLNALWQMLSGVCRRHAIAC
Ga0184624_1029003123300018073Groundwater SedimentGGYVGNKNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0066667_1019536413300018433Grasslands SoilIDNHNLESVKASVNRVLDALLEMLSGVCRRHAIAC
Ga0190273_1039642113300018920SoilAAEREMLSEHVHDDNAASASRAVNRVLDALWEMLSGVCRRHAIACA
Ga0173482_1060160123300019361SoilSAAEKKLLGRYVANQNFESVRESVNRVLDALWEMLSGVCRRHAIAC
Ga0193722_103820723300019877SoilSAAEQKLLGGYVGDQNFESVRASANRVLDALWEMLSGVCRRHAIAC
Ga0193725_101290533300019883SoilREMLSRHLDAHNFESVKVSVNRVLDALWDMLSGVCRRHAIAC
Ga0193725_109352613300019883SoilAAEQRLLGGCIDNQNFEPVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0193747_110121223300019885SoilMLSQHINDDNAAPTANAVDRILDALWEMLSGVFRHRHFIAC
Ga0193743_116220013300019889SoilEMLSAYIDNNNFESVRESVNRVLNALWQMLSGVCRRHAIAC
Ga0193734_100242813300020015SoilEMLSRHVDNRNFESVKVSVNCVLDALWDMLSGVCRRHAIAC
Ga0210382_1022855513300021080Groundwater SedimentARRRAADVSQYVNDDNATPTTNSVDRVLDALWEMLSGVCRRHAIAC
Ga0193719_1005323823300021344SoilKMLSSYIDNYNFESVKASVQRVLDALWEMLSGVCRRHAIAC
Ga0193719_1031857323300021344SoilRDDGKRRMLSEYVSDENAAPVSAAVTRILDALWEMLSGVCRRHAIAC
Ga0126371_1079847823300021560Tropical Forest SoilASEREMLSAYVDDADIDNVRVSVRRVLDALWEMLSGVCRRHAIIC
Ga0222622_1034684313300022756Groundwater SedimentREMLSEHVHNDNASSASKAVDRVLDALWEMLSGVCRRHAIAC
Ga0193714_101800513300023058SoilQKLLGGYVGDQNFESVRASANRVLDALWEMLSGVCRRHAIAC
Ga0207684_1132582513300025910Corn, Switchgrass And Miscanthus RhizosphereDREHSAVEREMLSRKIDSRNIDELRAVTASVLDALWEMLSSVCQRHVIAC
Ga0207681_10002222123300025923Switchgrass RhizosphereRKMLGAYIDDHNFESVRESVNRVLDALRQLLSGVCRRHAIAC
Ga0207687_1096329713300025927Miscanthus RhizosphereQKLLGGYVGNQNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0207700_1170864413300025928Corn, Switchgrass And Miscanthus RhizosphereMLNTYVNNRSFDSVRASVDRVLDALWEMLSGVCRRHAIAC
Ga0207664_1002447813300025929Agricultural SoilYIDNHNFESVKASVNRVLDALWEMLSGVSRRHAIA
Ga0207661_1008081813300025944Corn RhizosphereRLLGGYVDNQNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0207698_1273542313300026142Corn RhizosphereYVGNQNFESVRASANRVLDALWEMLSGVCRRHAIAC
Ga0209234_113794823300026295Grasslands SoilAEREMLADKIDNQNINNIRVSVNRVLDALWEMLSGVCRRHAIAC
Ga0209268_117913523300026314SoilYIDNRNLETVKASVNRVLDALLEMLSGVCRRHAIA
Ga0209470_120780513300026324SoilSYVDHDNFGKVKTATQRILDALWEMLTGVCRRQAIAC
Ga0209803_116573423300026332SoilERKMLREHVGSQNLESVKASVNRVLDALWEMLSGVYRRHAIAC
Ga0209803_136924013300026332SoilNFESVKTSVNRVLNALWELLSSLCRRHAIACQNLV
Ga0209377_106503113300026334SoilSDAERKILNSFVNKHNFESVKASVNRVLEALWKMLSGVCRRHAIAY
Ga0257156_105008233300026498SoilKMLSSYIDNHNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0209808_128553513300026523SoilKHSADEREMLGSYVDDRNIDNVRTSVHRVLDALWQMLSGVCRRHAIAC
Ga0209059_117377023300026527SoilTEREMLNRYIDDRNFESVKASVSRVLDALWEMLSGVCRRHAIAC
Ga0209806_115451613300026529SoilHSAAERKMLREHVGSQNLESVKASVNRVLDALWEMLSGVYRRHAIAC
Ga0209807_105734013300026530SoilNRYVNERNFESVKASVNRILDALWEMLSGVCRRHAIAC
Ga0209056_1020804423300026538SoilREHVGSQNLESVKASVNRVLDALWEMLSGVYRRHAIAC
Ga0179587_1086532923300026557Vadose Zone SoilHVGNQNLESVKASVKRVLDALWEMLSGVCRRHAIAC
Ga0209220_109953113300027587Forest SoilKMLSTKIDDGNFENVKASVNRVLEALWEMLSGVCRRHAIAC
Ga0209625_109527923300027635Forest SoilHIHDDNASSASAAVDRVLDALWEMLSGVCRRHAIAC
Ga0209011_101130913300027678Forest SoilSSYLDNGNFENVKASANRVLDALWEMLSGVCRRHAIAC
Ga0209590_1001610713300027882Vadose Zone SoilSAAERTMLSAYIDNHNIDKVRAAAQRVLDALWEMLSGVCRRHAIAC
Ga0307291_100284253300028707SoilQMLSEYVNNDNAAPVSAAVNRVLDALWEMLSGVCRRHAIAC
Ga0307307_1030017123300028718SoilEQKLLGGYVGNQNFESVRASANRVLDALWEMLSGVCRRHAIAC
Ga0307282_1007391913300028784SoilRYLGVHNFESVKVSVNRVLDALWDMLSGVCRRQAIAC
Ga0307299_1039385813300028793SoilLAEHIGTQNFEHVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0307287_1038042123300028796SoilMLRRYLDAHNFESVKVSVNRVLDALWDMLSGVCRRHAIAC
Ga0307308_1036465423300028884SoilAVERKMLAGYIDNHNFESVKASVTRILDALWEMLSGVCGRHAIAC
Ga0075373_1159854323300030945SoilEHAAAERKMLSSYIDNHNFESVKATVNRVLDALWEMLSGISRSHAIA
Ga0170824_10182932313300031231Forest SoilTYVDDGNFNSVKTSVNRVLDALWEMLSGVCRRHAIAC
Ga0170819_1731438123300031469Forest SoilREHAAAERKMLSSYIDNHNFESVKATVNRVLDALREMLSGASRRHAIA
Ga0310915_1097568823300031573SoilQRLLGGYVSNQNFGSVTVSVNRVLDALWEMLSGVCRRHAIAC
Ga0306917_1042081413300031719SoilREHAAAERKLLAEHVDETNFESVKASVHGVLDALWSLLTGVCQRHAIACWL
Ga0318553_1070043413300032068SoilAYIDNQNVDNVRMSANRVLDALWEMLSGICRRHAVVC
Ga0306924_1245045723300032076SoilTEQRLLRRYVSNQNFESVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0335085_1139546623300032770SoilEREMLSDKIDNRNIDNVRASVNRVLDALWEMLSGVCRRHAIAC
Ga0310810_1039366823300033412SoilYVDNQNFESVRASVNRVLNALWEMLSGVCRRHAIAC
Ga0310810_1057905913300033412SoilYVDKQNFEFVRESVNRVLDALWEMLSGVCRRHAIA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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