Metagenome / Metatranscriptome Family F047624

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F047624
Family Type	Metagenome / Metatranscriptome
Number of Sequences	149
Average Sequence Length	42 residues
Representative Sequence	MGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Number of Associated Samples	110
Number of Associated Scaffolds	149

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	10.07 %
% of genes near scaffold ends (potentially truncated)	91.95 %
% of genes from short scaffolds (< 2000 bps)	92.62 %
Associated GOLD sequencing projects	104
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.718 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.188 % of family members)
Environment Ontology (ENVO)	Unclassified (42.282 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.322 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.29% β-sheet: 0.00% Coil/Unstructured: 79.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 149 Family Scaffolds
PF00724	Oxidored_FMN	4.03
PF07813	LTXXQ	2.01
PF04392	ABC_sub_bind	2.01
PF06147	DUF968	2.01
PF02518	HATPase_c	2.01
PF03401	TctC	1.34
PF13091	PLDc_2	1.34
PF13358	DDE_3	1.34
PF00664	ABC_membrane	0.67
PF00292	PAX	0.67
PF04545	Sigma70_r4	0.67
PF03308	MeaB	0.67
PF08281	Sigma70_r4_2	0.67
PF13592	HTH_33	0.67
PF00211	Guanylate_cyc	0.67
PF01243	Putative_PNPOx	0.67

COG ID	Name	Functional Category	% Frequency in 149 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	8.05
COG0042	tRNA-dihydrouridine synthase	Translation, ribosomal structure and biogenesis [J]	4.03
COG1902	2,4-dienoyl-CoA reductase or related NADH-dependent reductase, Old Yellow Enzyme (OYE) family	Energy production and conversion [C]	4.03
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.01
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.34
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.72 %
Unclassified	root	N/A	42.28 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.69 %
Unclassified	root	N/A	42.28 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.67 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.68 %
Unclassified	root	N/A	42.28 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	29.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.05 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	0.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.67 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.37 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.68 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	0.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.67 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.85 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.70 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.68 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.67 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.68 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.34 %
unclassified Pseudolabrys	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys	0.67 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.28 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	26.85 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.68 %
Bradyrhizobium sp. 131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	0.67 %
Pseudolabrys sp. Root1462	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	0.67 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.67 %
Bradyrhizobium canariense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	0.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	0.67 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.67 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002917\|JGI25616J43925_10274470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300005167\|Ga0066672_10019491	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3519	Open in IMG/M
3300005167\|Ga0066672_10430462	Not Available	862	Open in IMG/M
3300005332\|Ga0066388_102228985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	989	Open in IMG/M
3300005332\|Ga0066388_103202168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	836	Open in IMG/M
3300005332\|Ga0066388_108491764	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	511	Open in IMG/M
3300005436\|Ga0070713_100981057	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	815	Open in IMG/M
3300005468\|Ga0070707_101286345	Not Available	698	Open in IMG/M
3300005468\|Ga0070707_101950253	Not Available	555	Open in IMG/M
3300005471\|Ga0070698_102099388	Not Available	518	Open in IMG/M
3300005535\|Ga0070684_100444773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1197	Open in IMG/M
3300005543\|Ga0070672_100086621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2519	Open in IMG/M
3300005552\|Ga0066701_10832684	Not Available	549	Open in IMG/M
3300005713\|Ga0066905_100551996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	967	Open in IMG/M
3300005713\|Ga0066905_101038890	Not Available	724	Open in IMG/M
3300005713\|Ga0066905_101741889	Not Available	573	Open in IMG/M
3300005713\|Ga0066905_101747942	Not Available	572	Open in IMG/M
3300005764\|Ga0066903_100640272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1855	Open in IMG/M
3300005764\|Ga0066903_103081939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	902	Open in IMG/M
3300005764\|Ga0066903_105360006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300005764\|Ga0066903_107029425	Not Available	583	Open in IMG/M
3300005764\|Ga0066903_107949895	Not Available	544	Open in IMG/M
3300005764\|Ga0066903_108949685	Not Available	507	Open in IMG/M
3300006038\|Ga0075365_10418931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	945	Open in IMG/M
3300006755\|Ga0079222_10550980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300006797\|Ga0066659_10408670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1069	Open in IMG/M
3300006881\|Ga0068865_100059397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2674	Open in IMG/M
3300006953\|Ga0074063_10125444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1108	Open in IMG/M
3300007255\|Ga0099791_10508139	Not Available	585	Open in IMG/M
3300009090\|Ga0099827_10067538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2748	Open in IMG/M
3300009101\|Ga0105247_10158037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1499	Open in IMG/M
3300009137\|Ga0066709_101731370	Not Available	884	Open in IMG/M
3300009162\|Ga0075423_12050560	Not Available	620	Open in IMG/M
3300010048\|Ga0126373_10505289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1252	Open in IMG/M
3300010048\|Ga0126373_12364064	Not Available	591	Open in IMG/M
3300010048\|Ga0126373_13002346	Not Available	526	Open in IMG/M
3300010359\|Ga0126376_12121556	Not Available	606	Open in IMG/M
3300010360\|Ga0126372_12426938	Not Available	575	Open in IMG/M
3300010362\|Ga0126377_10333696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1507	Open in IMG/M
3300010362\|Ga0126377_13611882	Not Available	500	Open in IMG/M
3300010366\|Ga0126379_11712448	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300010376\|Ga0126381_103315737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	635	Open in IMG/M
3300010398\|Ga0126383_10664686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1118	Open in IMG/M
3300010398\|Ga0126383_11146197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	867	Open in IMG/M
3300010398\|Ga0126383_12312104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	623	Open in IMG/M
3300010398\|Ga0126383_12617746	Not Available	588	Open in IMG/M
3300010398\|Ga0126383_13079128	Not Available	544	Open in IMG/M
3300012096\|Ga0137389_10927291	Not Available	747	Open in IMG/M
3300012200\|Ga0137382_11340460	Not Available	504	Open in IMG/M
3300012201\|Ga0137365_10216440	All Organisms → cellular organisms → Bacteria	1430	Open in IMG/M
3300012205\|Ga0137362_11535469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	553	Open in IMG/M
3300012206\|Ga0137380_11561665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300012208\|Ga0137376_11047154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300012209\|Ga0137379_11320768	Not Available	626	Open in IMG/M
3300012211\|Ga0137377_11908118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300012355\|Ga0137369_10067726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3036	Open in IMG/M
3300012358\|Ga0137368_10388313	Not Available	919	Open in IMG/M
3300012582\|Ga0137358_10772965	Not Available	640	Open in IMG/M
3300012885\|Ga0157287_1102391	Not Available	533	Open in IMG/M
3300012914\|Ga0157297_10232473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300012918\|Ga0137396_10651934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300012930\|Ga0137407_11315180	Not Available	687	Open in IMG/M
3300012951\|Ga0164300_10456584	Not Available	718	Open in IMG/M
3300012955\|Ga0164298_10039307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2194	Open in IMG/M
3300015077\|Ga0173483_10058238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1501	Open in IMG/M
3300015373\|Ga0132257_103230810	Not Available	593	Open in IMG/M
3300016270\|Ga0182036_10748226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300016270\|Ga0182036_11342507	Not Available	597	Open in IMG/M
3300016270\|Ga0182036_11713110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	531	Open in IMG/M
3300016294\|Ga0182041_10213126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1547	Open in IMG/M
3300016294\|Ga0182041_11589647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	603	Open in IMG/M
3300016294\|Ga0182041_12135873	Not Available	523	Open in IMG/M
3300016319\|Ga0182033_11228377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	672	Open in IMG/M
3300016341\|Ga0182035_10494736	Not Available	1043	Open in IMG/M
3300016341\|Ga0182035_10554518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	988	Open in IMG/M
3300016341\|Ga0182035_11500094	Not Available	607	Open in IMG/M
3300016341\|Ga0182035_11557298	Not Available	595	Open in IMG/M
3300016341\|Ga0182035_12011300	Not Available	525	Open in IMG/M
3300016387\|Ga0182040_10354236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1139	Open in IMG/M
3300016387\|Ga0182040_11595418	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	556	Open in IMG/M
3300016404\|Ga0182037_11471451	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300016404\|Ga0182037_12046054	Not Available	514	Open in IMG/M
3300018055\|Ga0184616_10146904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	869	Open in IMG/M
3300018482\|Ga0066669_11851401	Not Available	560	Open in IMG/M
3300019362\|Ga0173479_10046622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1401	Open in IMG/M
3300020005\|Ga0193697_1097061	Not Available	706	Open in IMG/M
3300020170\|Ga0179594_10307969	Not Available	600	Open in IMG/M
3300021432\|Ga0210384_11504080	Not Available	579	Open in IMG/M
3300021560\|Ga0126371_11415755	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	826	Open in IMG/M
3300021560\|Ga0126371_12887427	Not Available	582	Open in IMG/M
3300021951\|Ga0222624_1035202	Not Available	707	Open in IMG/M
3300025909\|Ga0207705_10438711	Not Available	1012	Open in IMG/M
3300025928\|Ga0207700_11503537	Not Available	597	Open in IMG/M
3300025986\|Ga0207658_11925747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300026067\|Ga0207678_11725725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300026312\|Ga0209153_1189902	Not Available	731	Open in IMG/M
3300026319\|Ga0209647_1190184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300026328\|Ga0209802_1146567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300027884\|Ga0209275_10229629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1012	Open in IMG/M
3300027915\|Ga0209069_11049908	Not Available	503	Open in IMG/M
3300028906\|Ga0308309_11258523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031082\|Ga0308192_1082504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300031543\|Ga0318516_10686869	Not Available	581	Open in IMG/M
3300031546\|Ga0318538_10376526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	767	Open in IMG/M
3300031561\|Ga0318528_10043510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2254	Open in IMG/M
3300031561\|Ga0318528_10116957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1408	Open in IMG/M
3300031573\|Ga0310915_10258720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1225	Open in IMG/M
3300031680\|Ga0318574_10636843	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	625	Open in IMG/M
3300031723\|Ga0318493_10770887	Not Available	541	Open in IMG/M
3300031748\|Ga0318492_10639859	Not Available	568	Open in IMG/M
3300031763\|Ga0318537_10108580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1029	Open in IMG/M
3300031763\|Ga0318537_10269132	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300031764\|Ga0318535_10000791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8017	Open in IMG/M
3300031765\|Ga0318554_10671069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	582	Open in IMG/M
3300031768\|Ga0318509_10741246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	544	Open in IMG/M
3300031770\|Ga0318521_10817227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300031778\|Ga0318498_10423481	Not Available	590	Open in IMG/M
3300031779\|Ga0318566_10505904	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300031779\|Ga0318566_10624453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	524	Open in IMG/M
3300031781\|Ga0318547_10720186	Not Available	620	Open in IMG/M
3300031792\|Ga0318529_10459357	Not Available	592	Open in IMG/M
3300031796\|Ga0318576_10508088	Not Available	568	Open in IMG/M
3300031805\|Ga0318497_10544558	Not Available	650	Open in IMG/M
3300031821\|Ga0318567_10691938	Not Available	578	Open in IMG/M
3300031831\|Ga0318564_10331421	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	670	Open in IMG/M
3300031879\|Ga0306919_10367051	Not Available	1101	Open in IMG/M
3300031879\|Ga0306919_10892919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300031880\|Ga0318544_10286075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	639	Open in IMG/M
3300031897\|Ga0318520_10191378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1203	Open in IMG/M
3300031897\|Ga0318520_11033015	Not Available	520	Open in IMG/M
3300031912\|Ga0306921_12073377	Not Available	603	Open in IMG/M
3300031942\|Ga0310916_10154767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → unclassified Pseudolabrys → Pseudolabrys sp. Root1462	1894	Open in IMG/M
3300031942\|Ga0310916_11551761	Not Available	539	Open in IMG/M
3300031945\|Ga0310913_10084172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2127	Open in IMG/M
3300031946\|Ga0310910_10275328	All Organisms → cellular organisms → Bacteria → Proteobacteria	1320	Open in IMG/M
3300031947\|Ga0310909_11447141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 131	549	Open in IMG/M
3300031954\|Ga0306926_10654130	All Organisms → cellular organisms → Bacteria → Proteobacteria	1278	Open in IMG/M
3300032001\|Ga0306922_10596685	All Organisms → cellular organisms → Bacteria	1170	Open in IMG/M
3300032010\|Ga0318569_10396373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300032039\|Ga0318559_10030661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2146	Open in IMG/M
3300032044\|Ga0318558_10471490	Not Available	626	Open in IMG/M
3300032052\|Ga0318506_10057834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1582	Open in IMG/M
3300032052\|Ga0318506_10411721	Not Available	599	Open in IMG/M
3300032065\|Ga0318513_10381888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium canariense	687	Open in IMG/M
3300032065\|Ga0318513_10554671	Not Available	562	Open in IMG/M
3300032090\|Ga0318518_10591815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300032090\|Ga0318518_10624659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300032261\|Ga0306920_100297256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2405	Open in IMG/M
3300033289\|Ga0310914_11790695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	518	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	93.96%
Host-Associated	Host-Associated	6.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.95%
Plants	Host-Associated → Plants	6.04%
Aquatic	Environmental → Aquatic	2.01%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.95%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.03%
Sediment	Environmental → Aquatic → Sediment	1.34%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.34%
Freshwater	Environmental → Aquatic → Freshwater	0.67%
Roots	Host-Associated → Plants → Roots	0.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.85%
Loam	Environmental → Terrestrial → Soil → Loam	14.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.34%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.67%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.52%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.07%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.03%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.68%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.34%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.34%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.67%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.77%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.03%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.36%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.68%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.34%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.34%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.67%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.67%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.67%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.67%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.67%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.67%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012885	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300018055	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_coex	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026312	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25616J43925_102744701	3300002917	Grasslands Soil	LNMGSPLYRIRLSETKLPKEEVGKIVRQMQSESKIVDFIAAKE*
Ga0066672_100194916	3300005167	Soil	EGPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE*
Ga0066672_104304621	3300005167	Soil	LRGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE*
Ga0066388_1022289851	3300005332	Tropical Forest Soil	GGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAKE*
Ga0066388_1032021681	3300005332	Tropical Forest Soil	PLNMGGQLYRIRLSETKLPQDEVGRIIREMQSDSKVVGFIAAKE*
Ga0066388_1084917642	3300005332	Tropical Forest Soil	PLNMGGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIIAKE*
Ga0070713_1009810571	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MGNPLYVIRLSETKLPKEEVDNIIKQMQSESKIVDFIAVK*
Ga0070707_1012863451	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GPLRGQLYRIRLSETKLREEEVGKIVRQMQSESNVVSFIAAKE*
Ga0070707_1019502531	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	PLNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAAKE*
Ga0070698_1020993881	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	RGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVAFIAAKE*
Ga0070684_1004447732	3300005535	Corn Rhizosphere	VEGPLNMGGQLYRIRLSEAKLPRDEVGKIIRQMQEESKVVGFIAVNE*
Ga0070672_1000866211	3300005543	Miscanthus Rhizosphere	MGGQLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0066701_108326842	3300005552	Soil	LYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE*
Ga0066905_1005519962	3300005713	Tropical Forest Soil	EGPLNMGGQLYRIRLSETKLPQDEVGRIIREMQSDSKVVGFIAAKE*
Ga0066905_1010388901	3300005713	Tropical Forest Soil	LNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAAKE*
Ga0066905_1017418891	3300005713	Tropical Forest Soil	LNMGGQLYRIRLSETKLPKDEVGKIVRQMQAESKVVGFIAARE*
Ga0066905_1017479422	3300005713	Tropical Forest Soil	GPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEK*
Ga0066903_1006402724	3300005764	Tropical Forest Soil	PLNMGGQLYRIRLSETKLPQDEVGKIIQQMQSESKVVGFVAAKE*
Ga0066903_1030819393	3300005764	Tropical Forest Soil	LKDRLNGQLYRIRLSETKLPTEEVGKIVRQMQSESNVVNFIAAK
Ga0066903_1053600061	3300005764	Tropical Forest Soil	QLYRIRLSETKLPKDEVGRIVRQMQAESKVVGFIAARE*
Ga0066903_1070294251	3300005764	Tropical Forest Soil	VDGPLRAGGSLYRIRLSESRLPKDEVDRIVRSMHEESKVVAFIAAAD*
Ga0066903_1079498952	3300005764	Tropical Forest Soil	LYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE*
Ga0066903_1089496852	3300005764	Tropical Forest Soil	MGGQLYRIRISGTKLPKEEVDQIVRQTQSESKVVDYIAVEE*
Ga0075365_104189311	3300006038	Populus Endosphere	GQLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0079222_105509801	3300006755	Agricultural Soil	QLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAAKE*
Ga0066659_104086702	3300006797	Soil	EGPLNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVGFVAAKE*
Ga0068865_1000593974	3300006881	Miscanthus Rhizosphere	QLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0074063_101254443	3300006953	Soil	PLNMGGQLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0099791_105081392	3300007255	Vadose Zone Soil	PLNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAVKE*
Ga0099827_100675381	3300009090	Vadose Zone Soil	VVEGPLNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIACR*
Ga0105247_101580371	3300009101	Switchgrass Rhizosphere	MGGQLYRIRLSEAKLPRDEVGKIIRQMQEESKVVGFIAVNE*
Ga0066709_1017313701	3300009137	Grasslands Soil	LNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIVAKE*
Ga0075423_120505601	3300009162	Populus Rhizosphere	QLYRIRLSETTLPKDEVGKIVQQMQAESKVVGFIAARD*
Ga0126373_105052894	3300010048	Tropical Forest Soil	KGQLYRIRLSNTKLPQEEVGNLVSQMQSESKVVEFIAAKE*
Ga0126373_123640641	3300010048	Tropical Forest Soil	YRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE*
Ga0126373_130023461	3300010048	Tropical Forest Soil	IRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE*
Ga0126376_121215561	3300010359	Tropical Forest Soil	NMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIIGFIAAKE*
Ga0126372_124269381	3300010360	Tropical Forest Soil	QLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE*
Ga0126377_103336962	3300010362	Tropical Forest Soil	VVDGPLNIGGPAYRVRLSETKLQEDEVDKIVRQMQSESKIVDFIAAKE*
Ga0126377_136118821	3300010362	Tropical Forest Soil	VVEGPLRGQLYRIRLSETKLPKEEVGKIVRQIQSESNVVNFIAAKE*
Ga0126379_117124483	3300010366	Tropical Forest Soil	GQLYRIRLSETKLPREEVGKIVRQMQSESNVVGFIAAKE*
Ga0126381_1033157372	3300010376	Tropical Forest Soil	VVEGPLNMGGPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEK*
Ga0126383_106646861	3300010398	Tropical Forest Soil	RIRLSETKLPKDEVGKIVQQMQAESKVVGFIAARE*
Ga0126383_111461972	3300010398	Tropical Forest Soil	PLEGQLYRIRLSKTKLPQEEVGNLVSQMQSESKVVDFIAAKE*
Ga0126383_123121041	3300010398	Tropical Forest Soil	LEGQLYRIRLSKTKLPQEEVGNLVSQMQSESKVVDFIAAKE*
Ga0126383_126177461	3300010398	Tropical Forest Soil	RIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE*
Ga0126383_130791281	3300010398	Tropical Forest Soil	LYRIRLSETKLPKDEVGKIVQQMQAESKVVGFIAARE*
Ga0137389_109272911	3300012096	Vadose Zone Soil	IRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE*
Ga0137382_113404601	3300012200	Vadose Zone Soil	VEGPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAARE*
Ga0137365_102164401	3300012201	Vadose Zone Soil	KMGGPVYRVRLSETKLPKEEVGKIVRQMQSESKIVDFIAAEE*
Ga0137362_115354692	3300012205	Vadose Zone Soil	GPLNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAKE*
Ga0137380_115616652	3300012206	Vadose Zone Soil	MGGQLYRIRLFETKLPKEEVGKIVRQMQSESKVVDFIAAKE*
Ga0137376_110471541	3300012208	Vadose Zone Soil	MGGQLYRIRLSETKLPKEEVGKIVRQMQSESKIIDFIAAKE*
Ga0137379_113207682	3300012209	Vadose Zone Soil	YRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE*
Ga0137377_119081181	3300012211	Vadose Zone Soil	EGPLNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVGFIAARE*
Ga0137369_100677264	3300012355	Vadose Zone Soil	VEGPLNMGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVGFVAAKE*
Ga0137368_103883131	3300012358	Vadose Zone Soil	LKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE*
Ga0137358_107729651	3300012582	Vadose Zone Soil	MGGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAK
Ga0157287_11023912	3300012885	Soil	VVEGPLRGQLYRIRLSEIKLPKEEVGKIVRQMQSESKVVAFIAAKE*
Ga0157297_102324731	3300012914	Soil	PLNMGGQLYRIRLSEAKLPRDEVGKIIRQMQEESKVVGFIAVNE*
Ga0137396_106519341	3300012918	Vadose Zone Soil	MGSPLYRIRLSETKLPKEEVGKIVRQMQSESKIVDFIAAKE*
Ga0137407_113151801	3300012930	Vadose Zone Soil	GPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE*
Ga0164300_104565842	3300012951	Soil	YRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0164298_100393074	3300012955	Soil	GGQLYRIRLSEAKLPRDEVGKIIRQMQEESKVVGFIAVNE*
Ga0173483_100582383	3300015077	Soil	LYRIRLSETKLPKEEVGKIVRQMQSESKVVAFIAAKE*
Ga0132257_1032308101	3300015373	Arabidopsis Rhizosphere	IRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE*
Ga0182036_107482262	3300016270	Soil	GPLKGQLYRIRLSETKLPKEEVGKIVREMQSESNVVNFIAAQE
Ga0182036_113425071	3300016270	Soil	GPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEE
Ga0182036_117131102	3300016270	Soil	MGGPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIA
Ga0182041_102131261	3300016294	Soil	LKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAQE
Ga0182041_115896471	3300016294	Soil	NMGGQLYRIRLSETKLPKDEVGKIVRQMQAESKVVGFIAARE
Ga0182041_121358731	3300016294	Soil	PLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0182033_112283772	3300016319	Soil	MGGPVYRIRIAGTKLPKEEVGKIVRQMQSESKIVDYIA
Ga0182035_104947362	3300016341	Soil	KGQLYRIRLSETKLPTEEVGKIVRQMQSESNVVNFITAKE
Ga0182035_105545182	3300016341	Soil	LYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAQE
Ga0182035_115000941	3300016341	Soil	PLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0182035_115572982	3300016341	Soil	VVEGPKQFGLYTIKLSETKLPADEVNKIVRQMQEESKIVSLVAVKQ
Ga0182035_120113001	3300016341	Soil	GQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0182040_103542361	3300016387	Soil	GPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVDFIAAKE
Ga0182040_115954181	3300016387	Soil	GPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0182037_114714512	3300016404	Soil	EGPLNMGGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIVAKE
Ga0182037_120460541	3300016404	Soil	NMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0184616_101469042	3300018055	Groundwater Sediment	PLNMGGQLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE
Ga0066669_118514011	3300018482	Grasslands Soil	VEGPLKGQLYRVRLSETRLPKEEVGKIIRQMQSESNVVGFVAAKE
Ga0173479_100466224	3300019362	Soil	VVEGPLRGQLYRIRLSEIKLPKEEVGKIVRQMQSESKVVAFIAAKE
Ga0193697_10970611	3300020005	Soil	LYRIRLSEARLPKDEVGKIIRQMQGESKVVGFIAVNE
Ga0179594_103079691	3300020170	Vadose Zone Soil	EGPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAVKE
Ga0210384_115040801	3300021432	Soil	PLNMGGQLYRIRLSETKLPKDEVGKIVRQMQSESKVVGFIAVRE
Ga0126371_114157551	3300021560	Tropical Forest Soil	VVEGPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVAFIAAKE
Ga0126371_128874271	3300021560	Tropical Forest Soil	QLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0222624_10352022	3300021951	Groundwater Sediment	PLNMGGQLYRIRLSEAKLPKDEVGKIIRQMQEESKVVGFIAVNE
Ga0207705_104387111	3300025909	Corn Rhizosphere	LYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE
Ga0207700_115035371	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	LRGQLYRIRLSETKLPKEEVGKIVRQMQSESKVVAFIAAKE
Ga0207658_119257471	3300025986	Switchgrass Rhizosphere	GPLNMGGQLYRIRLSEAKLPKDEVGKIIRQMQGESKVVGFIAVNE
Ga0207678_117257251	3300026067	Corn Rhizosphere	LNMGGQLYRIRLSEAKLPRDEVGKIIRQMQEESKVVGFIAVNE
Ga0209153_11899022	3300026312	Soil	QLYRIRLSETKLPREEVGKIVRQMQSESNVVGFIAAKE
Ga0209647_11901842	3300026319	Grasslands Soil	LYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAKE
Ga0209802_11465672	3300026328	Soil	MGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0209275_102296293	3300027884	Soil	AGGGLYRIRLAENPLPPNDVGKIVRQMQEESRIVGFIAAAD
Ga0209069_110499081	3300027915	Watersheds	LYRIRLSEAKLPKDEVGKIIRQMQEESKVVGFIAVNE
Ga0308309_112585231	3300028906	Soil	GPLNMGGQLYRIRLSDTKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0308192_10825042	3300031082	Soil	MGGQLYRIRLSEAKLPKDEVGKIIRQMQEESKVVGFIAVNE
Ga0318516_106868691	3300031543	Soil	RIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318538_103765261	3300031546	Soil	LYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE
Ga0318528_100435101	3300031561	Soil	VEGPLRGQLYRIRLSETKLPKEEAGKIVRQMQSESNVVNFIAAKE
Ga0318528_101169572	3300031561	Soil	GQLYRIRLSEIKLPTEEVGKIVRQMQSESNVVNFIAAKE
Ga0310915_102587202	3300031573	Soil	VVEGPLNMGGPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEE
Ga0318574_106368431	3300031680	Soil	GPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVDFIAANE
Ga0318493_107708871	3300031723	Soil	VVEGPLRGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE
Ga0318492_106398592	3300031748	Soil	PLNMGGPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEE
Ga0318537_101085802	3300031763	Soil	MGGPVYRIRISGTKLPKEEVGKIVRQMQSESKIVDYIAAEE
Ga0318537_102691321	3300031763	Soil	LYRIRLSGTKLPKEEVDKIVRQMQSESKVVDYIAAKE
Ga0318535_1000079110	3300031764	Soil	NMGGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318554_106710692	3300031765	Soil	GGQLYRIRLSDTKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0318509_107412461	3300031768	Soil	GGQLYRIRLSETKLPKDEVGKIVRQMQEESKIIGFIAAKD
Ga0318521_108172271	3300031770	Soil	MGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIIGFIAAKD
Ga0318498_104234811	3300031778	Soil	GGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318566_105059042	3300031779	Soil	QGPLNMGGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIVAKE
Ga0318566_106244531	3300031779	Soil	QLYRIRLSETKLPKDEVGKIVRQMQAESKVVGFIAARE
Ga0318547_107201861	3300031781	Soil	VEGPLRGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE
Ga0318529_104593572	3300031792	Soil	LYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318576_105080881	3300031796	Soil	VEGPLEGQLYRIRLSETRLPKEEVGKIIRQMQSESNVVGFVAAKE
Ga0318497_105445581	3300031805	Soil	VEGPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318567_106919382	3300031821	Soil	LNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0318564_103314211	3300031831	Soil	NMGGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIVAKE
Ga0306919_103670513	3300031879	Soil	GPVYRIRISGTKLPKEEVGKIVGQMHSESKIVDYIAAEE
Ga0306919_108929191	3300031879	Soil	EGPLKGQLYRIRLSETKLPKEEVGKLVRQMQSESNVVDFIAAKE
Ga0318544_102860752	3300031880	Soil	PLKGQLYRIRLSEIKLPTEEVGKIVRQMQSESNVVNFIAAKE
Ga0318520_101913783	3300031897	Soil	AWVFEGPLKGQLSRIRLSETKLPTEEVGKIVRQMQSESNVVGFVAAKE
Ga0318520_110330151	3300031897	Soil	LYRIRLSETKLPKEEVGKIVRQMQSESNVVPFIAAKE
Ga0306921_120733771	3300031912	Soil	MGGPVYRIRISGTKLPKEEVGRIVRQIQSESKVVDYIAAEE
Ga0310916_101547671	3300031942	Soil	LYRIRLSETKLREEEVGKIVRQMRSESNVVSFIAAKE
Ga0310916_115517611	3300031942	Soil	LKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVAFIAAKE
Ga0310913_100841721	3300031945	Soil	GQLYRIRLSETRLPKEEVGKIIRQMQSESNVVGFVAAKE
Ga0310910_102753282	3300031946	Soil	RIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAKE
Ga0310909_114471411	3300031947	Soil	AKVVDGPMGGQLYRIRLSETKLPKEEVDQIVRQTESESKVVDYIAAEE
Ga0306926_106541301	3300031954	Soil	EGPLNMGGRLYRIRLSETKLPKEEVGKIVRQMQSESKVVDFIAAKE
Ga0306922_105966851	3300032001	Soil	EGPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVAFIAAKE
Ga0318569_103963732	3300032010	Soil	GGRLYRIRLSETKLPKEEVAKIVRQMQSESKVVDFIVAKE
Ga0318559_100306611	3300032039	Soil	PLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFIAAKE
Ga0318558_104714901	3300032044	Soil	ATVVEGPLRGQLYRIRLSETKLPKEEVGKIVRQIQSESNVVNFIAAKE
Ga0318506_100578342	3300032052	Soil	TVVEGPLRGQLYRIRLSETKLPKEEAGKIVRQMQSESNVVNFIAAKE
Ga0318506_104117211	3300032052	Soil	LNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318513_103818881	3300032065	Soil	LKGQLYRIRLSEIRLPKEEVGKIIRQMQSESNVVGFVAAKE
Ga0318513_105546711	3300032065	Soil	GPLNMGGQLYRIRLSETKLPKDEVGKIVRQMQEESQIIGFIAAKE
Ga0318518_105918151	3300032090	Soil	VEGPLKGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVDFIANE
Ga0318518_106246591	3300032090	Soil	GQLYRIRLSETKLPKDEVGKIVRQMQEESKIVGFIAAKE
Ga0306920_1002972561	3300032261	Soil	VVEGPLRGQLYRIRLSETKLPKEEVGKIVRQMQSESNVVNFITVKE
Ga0310914_117906951	3300033289	Soil	PLEGQLYRIRLSKTKLPQEEVGNLVSQMQSESKVVDFIAAKE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F047624

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences