NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047275

Metagenome / Metatranscriptome Family F047275

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047275
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 42 residues
Representative Sequence LREPVARFTAVYESARFGNSPDDAQRLPELYEEVELATRTR
Number of Associated Samples 123
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.67 %
% of genes near scaffold ends (potentially truncated) 96.67 %
% of genes from short scaffolds (< 2000 bps) 92.00 %
Associated GOLD sequencing projects 116
AlphaFold2 3D model prediction Yes
3D model pTM-score0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (96.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(14.000 % of family members)
Environment Ontology (ENVO) Unclassified
(29.333 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(64.000 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 50.72%    β-sheet: 0.00%    Coil/Unstructured: 49.28%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.70
Powered by PDBe Molstar

Structural matches with SCOPe domains

SCOP familySCOP domainRepresentative PDBTM-score
f.5.1.1: Outer membrane efflux proteins (OEP)d1ek9a_1ek90.77282
a.216.1.1: I/LWEQ domaind1r0da_1r0d0.75784
a.26.1.2: Short-chain cytokinesd1v7mv_1v7m0.75036
a.2.8.1: Eukaryotic DNA topoisomerase I, dispensable insert domaind1k4ta11k4t0.75017
a.25.1.2: Ribonucleotide reductase-liked1za0a11za00.74425

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 150 Family Scaffolds
PF07992Pyr_redox_2 12.67
PF00919UPF0004 10.67
PF13505OMP_b-brl 8.67
PF04055Radical_SAM 2.67
PF13559DUF4129 2.67
PF07642BBP2 2.00
PF00294PfkB 1.33
PF14691Fer4_20 1.33
PF04608PgpA 1.33
PF03884YacG 1.33
PF04237YjbR 0.67
PF08447PAS_3 0.67
PF02834LigT_PEase 0.67
PF08244Glyco_hydro_32C 0.67
PF00291PALP 0.67
PF00069Pkinase 0.67
PF00677Lum_binding 0.67
PF01609DDE_Tnp_1 0.67
PF13620CarboxypepD_reg 0.67
PF00578AhpC-TSA 0.67
PF01493GXGXG 0.67
PF00582Usp 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 150 Family Scaffolds
COG0621tRNA A37 methylthiotransferase MiaBTranslation, ribosomal structure and biogenesis [J] 10.67
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 2.67
COG1267Phosphatidylglycerophosphatase ALipid transport and metabolism [I] 1.33
COG3024Endogenous inhibitor of DNA gyrase, YacG/DUF329 familyReplication, recombination and repair [L] 1.33
COG0307Riboflavin synthase alpha chainCoenzyme transport and metabolism [H] 0.67
COG1514RNA 2',3'-cyclic phosphodiesterase (2'-5' RNA ligase)Translation, ribosomal structure and biogenesis [J] 0.67
COG1621Sucrose-6-phosphate hydrolase SacC, GH32 familyCarbohydrate transport and metabolism [G] 0.67
COG2315Predicted DNA-binding protein with ‘double-wing’ structural motif, MmcQ/YjbR familyTranscription [K] 0.67
COG3039Transposase and inactivated derivatives, IS5 familyMobilome: prophages, transposons [X] 0.67
COG3293TransposaseMobilome: prophages, transposons [X] 0.67
COG3385IS4 transposase InsGMobilome: prophages, transposons [X] 0.67
COG5421TransposaseMobilome: prophages, transposons [X] 0.67
COG5433Predicted transposase YbfD/YdcC associated with H repeatsMobilome: prophages, transposons [X] 0.67
COG5659SRSO17 transposaseMobilome: prophages, transposons [X] 0.67

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.00 %
UnclassifiedrootN/A4.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10439625All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae779Open in IMG/M
3300001686|C688J18823_10886911All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia566Open in IMG/M
3300003505|JGIcombinedJ51221_10030636All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia1958Open in IMG/M
3300003505|JGIcombinedJ51221_10054100All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1532Open in IMG/M
3300004082|Ga0062384_100888373All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae629Open in IMG/M
3300004091|Ga0062387_100450675All Organisms → cellular organisms → Bacteria883Open in IMG/M
3300004139|Ga0058897_11144441All Organisms → cellular organisms → Bacteria894Open in IMG/M
3300004152|Ga0062386_100094730All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter2290Open in IMG/M
3300004152|Ga0062386_100698073All Organisms → cellular organisms → Bacteria833Open in IMG/M
3300005435|Ga0070714_102343778All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter519Open in IMG/M
3300005529|Ga0070741_10505850All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1091Open in IMG/M
3300005542|Ga0070732_10800654All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter575Open in IMG/M
3300005569|Ga0066705_10738364All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter591Open in IMG/M
3300005602|Ga0070762_10095889All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1709Open in IMG/M
3300005602|Ga0070762_11028852Not Available566Open in IMG/M
3300005712|Ga0070764_10145088All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1301Open in IMG/M
3300005764|Ga0066903_103755200All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae816Open in IMG/M
3300005764|Ga0066903_104846875All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter715Open in IMG/M
3300006050|Ga0075028_100647830All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300006162|Ga0075030_100442713All Organisms → cellular organisms → Bacteria → Acidobacteria1035Open in IMG/M
3300006173|Ga0070716_100365532All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1026Open in IMG/M
3300006176|Ga0070765_100446114All Organisms → cellular organisms → Bacteria1212Open in IMG/M
3300006176|Ga0070765_100462378All Organisms → cellular organisms → Bacteria1190Open in IMG/M
3300006176|Ga0070765_101228387All Organisms → cellular organisms → Bacteria → Acidobacteria707Open in IMG/M
3300006358|Ga0068871_100886558All Organisms → cellular organisms → Bacteria → Acidobacteria826Open in IMG/M
3300009143|Ga0099792_10088652All Organisms → cellular organisms → Bacteria1601Open in IMG/M
3300009522|Ga0116218_1323547All Organisms → cellular organisms → Bacteria → Acidobacteria689Open in IMG/M
3300009683|Ga0116224_10196647All Organisms → cellular organisms → Bacteria → Acidobacteria966Open in IMG/M
3300009700|Ga0116217_10194721All Organisms → cellular organisms → Bacteria → Acidobacteria1335Open in IMG/M
3300009759|Ga0116101_1094443All Organisms → cellular organisms → Bacteria → Acidobacteria690Open in IMG/M
3300009764|Ga0116134_1187693All Organisms → cellular organisms → Bacteria → Acidobacteria721Open in IMG/M
3300010048|Ga0126373_11359735All Organisms → cellular organisms → Bacteria776Open in IMG/M
3300010398|Ga0126383_13098793All Organisms → cellular organisms → Bacteria543Open in IMG/M
3300011120|Ga0150983_10055539All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300011120|Ga0150983_10162077All Organisms → cellular organisms → Bacteria → Acidobacteria809Open in IMG/M
3300011120|Ga0150983_10528458All Organisms → cellular organisms → Bacteria542Open in IMG/M
3300011120|Ga0150983_12890605All Organisms → cellular organisms → Bacteria → Acidobacteria847Open in IMG/M
3300011120|Ga0150983_13122112All Organisms → cellular organisms → Bacteria → Acidobacteria845Open in IMG/M
3300011120|Ga0150983_14382834All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300011271|Ga0137393_10016507All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5286Open in IMG/M
3300011271|Ga0137393_11207718All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300012201|Ga0137365_10930373All Organisms → cellular organisms → Bacteria → Acidobacteria633Open in IMG/M
3300012683|Ga0137398_10665814All Organisms → cellular organisms → Bacteria722Open in IMG/M
3300012929|Ga0137404_10786023All Organisms → cellular organisms → Bacteria → Acidobacteria864Open in IMG/M
3300012955|Ga0164298_10634588All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300012988|Ga0164306_11428198All Organisms → cellular organisms → Bacteria590Open in IMG/M
3300013307|Ga0157372_13346316All Organisms → cellular organisms → Bacteria510Open in IMG/M
3300014201|Ga0181537_10071014All Organisms → cellular organisms → Bacteria2362Open in IMG/M
3300014495|Ga0182015_10344172All Organisms → cellular organisms → Bacteria → Acidobacteria969Open in IMG/M
3300014657|Ga0181522_10530615All Organisms → cellular organisms → Bacteria → Acidobacteria711Open in IMG/M
3300016371|Ga0182034_11229772All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300016750|Ga0181505_10792783All Organisms → cellular organisms → Bacteria → Acidobacteria816Open in IMG/M
3300017943|Ga0187819_10408489All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300017948|Ga0187847_10497124All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300017959|Ga0187779_10230536All Organisms → cellular organisms → Bacteria1167Open in IMG/M
3300017972|Ga0187781_10337472All Organisms → cellular organisms → Bacteria → Acidobacteria1072Open in IMG/M
3300017975|Ga0187782_10761726All Organisms → cellular organisms → Bacteria748Open in IMG/M
3300017975|Ga0187782_10823581All Organisms → cellular organisms → Bacteria → Acidobacteria718Open in IMG/M
3300018006|Ga0187804_10479561All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7557Open in IMG/M
3300018038|Ga0187855_10158432All Organisms → cellular organisms → Bacteria → Acidobacteria1348Open in IMG/M
3300018038|Ga0187855_10565230All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300018042|Ga0187871_10039952All Organisms → cellular organisms → Bacteria → Acidobacteria2879Open in IMG/M
3300018062|Ga0187784_10287599All Organisms → cellular organisms → Bacteria → Acidobacteria1335Open in IMG/M
3300018085|Ga0187772_11339603All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300018086|Ga0187769_11386440All Organisms → cellular organisms → Bacteria → Acidobacteria532Open in IMG/M
3300018088|Ga0187771_10900631All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7750Open in IMG/M
3300018090|Ga0187770_11007792All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300019278|Ga0187800_1810226All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300021168|Ga0210406_11300374All Organisms → cellular organisms → Bacteria → Acidobacteria524Open in IMG/M
3300021171|Ga0210405_10759253All Organisms → cellular organisms → Bacteria746Open in IMG/M
3300021401|Ga0210393_10233361All Organisms → cellular organisms → Bacteria1491Open in IMG/M
3300021401|Ga0210393_10283259All Organisms → cellular organisms → Bacteria → Acidobacteria1346Open in IMG/M
3300021401|Ga0210393_10605761All Organisms → cellular organisms → Bacteria → Acidobacteria894Open in IMG/M
3300021406|Ga0210386_10182990All Organisms → cellular organisms → Bacteria → Acidobacteria1767Open in IMG/M
3300021420|Ga0210394_11440368All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300021432|Ga0210384_10898695All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300021433|Ga0210391_10503015All Organisms → cellular organisms → Bacteria → Acidobacteria951Open in IMG/M
3300021475|Ga0210392_10062919All Organisms → cellular organisms → Bacteria → Acidobacteria2330Open in IMG/M
3300021478|Ga0210402_10437049All Organisms → cellular organisms → Bacteria1215Open in IMG/M
3300021479|Ga0210410_11661384All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium532Open in IMG/M
3300021560|Ga0126371_11392188All Organisms → cellular organisms → Bacteria832Open in IMG/M
3300022502|Ga0242646_1010881All Organisms → cellular organisms → Bacteria → Acidobacteria761Open in IMG/M
3300022521|Ga0224541_1006205All Organisms → cellular organisms → Bacteria1281Open in IMG/M
3300022525|Ga0242656_1025090All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300022528|Ga0242669_1035314All Organisms → cellular organisms → Bacteria → Acidobacteria801Open in IMG/M
3300022532|Ga0242655_10163555All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300022715|Ga0242678_1018242All Organisms → cellular organisms → Bacteria → Acidobacteria829Open in IMG/M
3300022716|Ga0242673_1084960All Organisms → cellular organisms → Bacteria → Acidobacteria589Open in IMG/M
3300022721|Ga0242666_1069490All Organisms → cellular organisms → Bacteria773Open in IMG/M
3300022722|Ga0242657_1115899All Organisms → cellular organisms → Bacteria → Acidobacteria675Open in IMG/M
3300022734|Ga0224571_102537All Organisms → cellular organisms → Bacteria → Acidobacteria1162Open in IMG/M
3300023012|Ga0228597_100846All Organisms → cellular organisms → Bacteria → Acidobacteria1271Open in IMG/M
3300025604|Ga0207930_1076082All Organisms → cellular organisms → Bacteria → Acidobacteria795Open in IMG/M
3300025929|Ga0207664_10783740All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300025929|Ga0207664_10924352All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300026294|Ga0209839_10005790All Organisms → cellular organisms → Bacteria5622Open in IMG/M
3300026529|Ga0209806_1327274All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300027070|Ga0208365_1050304All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300027660|Ga0209736_1023409Not Available1879Open in IMG/M
3300027768|Ga0209772_10179547All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300027842|Ga0209580_10156059Not Available1124Open in IMG/M
3300027869|Ga0209579_10107437Not Available1480Open in IMG/M
3300027879|Ga0209169_10121131All Organisms → cellular organisms → Bacteria1357Open in IMG/M
3300027879|Ga0209169_10352044All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium775Open in IMG/M
3300027905|Ga0209415_10600907All Organisms → cellular organisms → Bacteria → Acidobacteria815Open in IMG/M
3300027908|Ga0209006_10558013All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300028036|Ga0265355_1012704All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300028560|Ga0302144_10298799All Organisms → cellular organisms → Bacteria → Acidobacteria521Open in IMG/M
3300028731|Ga0302301_1075022All Organisms → cellular organisms → Bacteria889Open in IMG/M
3300028747|Ga0302219_10417199All Organisms → cellular organisms → Bacteria → Acidobacteria526Open in IMG/M
3300028780|Ga0302225_10027232All Organisms → cellular organisms → Bacteria2876Open in IMG/M
3300028871|Ga0302230_10311253All Organisms → cellular organisms → Bacteria → Acidobacteria610Open in IMG/M
3300028906|Ga0308309_10177475All Organisms → cellular organisms → Bacteria1737Open in IMG/M
3300028906|Ga0308309_10405768All Organisms → cellular organisms → Bacteria1169Open in IMG/M
3300029908|Ga0311341_10096907All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2013Open in IMG/M
3300029913|Ga0311362_10100168All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3846Open in IMG/M
3300029918|Ga0302143_1174712All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300029999|Ga0311339_11502243Not Available600Open in IMG/M
3300030629|Ga0210268_1093342All Organisms → cellular organisms → Bacteria815Open in IMG/M
3300030706|Ga0310039_10176652All Organisms → cellular organisms → Bacteria → Acidobacteria852Open in IMG/M
3300030707|Ga0310038_10167482All Organisms → cellular organisms → Bacteria → Acidobacteria1076Open in IMG/M
3300031090|Ga0265760_10255036All Organisms → cellular organisms → Bacteria → Acidobacteria609Open in IMG/M
3300031122|Ga0170822_14730377All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300031231|Ga0170824_106372103All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300031231|Ga0170824_107756495All Organisms → cellular organisms → Bacteria → Acidobacteria2741Open in IMG/M
3300031231|Ga0170824_128202564All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1280Open in IMG/M
3300031247|Ga0265340_10488271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7542Open in IMG/M
3300031258|Ga0302318_10019874All Organisms → cellular organisms → Bacteria → Acidobacteria2302Open in IMG/M
3300031474|Ga0170818_102952184All Organisms → cellular organisms → Bacteria1218Open in IMG/M
3300031525|Ga0302326_12615007All Organisms → cellular organisms → Bacteria → Acidobacteria630Open in IMG/M
3300031708|Ga0310686_100194989All Organisms → cellular organisms → Bacteria → Acidobacteria942Open in IMG/M
3300031715|Ga0307476_10008058All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6470Open in IMG/M
3300031715|Ga0307476_10996666All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300031720|Ga0307469_10745582All Organisms → cellular organisms → Bacteria → Acidobacteria893Open in IMG/M
3300031753|Ga0307477_10585026All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300031753|Ga0307477_10984906All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300031754|Ga0307475_10759636All Organisms → cellular organisms → Bacteria → Acidobacteria771Open in IMG/M
3300031754|Ga0307475_11130071All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300031754|Ga0307475_11313413All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300031823|Ga0307478_10847114All Organisms → cellular organisms → Bacteria765Open in IMG/M
3300031938|Ga0308175_101276767All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300031962|Ga0307479_10969042All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium821Open in IMG/M
3300032515|Ga0348332_11179708All Organisms → cellular organisms → Bacteria → Acidobacteria893Open in IMG/M
3300032515|Ga0348332_11788405All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300032515|Ga0348332_12199325All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300032828|Ga0335080_12289493All Organisms → cellular organisms → Bacteria → Acidobacteria517Open in IMG/M
3300032896|Ga0335075_10613035All Organisms → cellular organisms → Bacteria1073Open in IMG/M
3300032954|Ga0335083_10327132Not Available1336Open in IMG/M
3300033134|Ga0335073_10786142All Organisms → cellular organisms → Bacteria1024Open in IMG/M
3300034195|Ga0370501_0400744All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_4_56_7502Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil14.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil8.67%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil6.67%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland6.00%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil4.00%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil4.00%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa4.00%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.33%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.33%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil3.33%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog3.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.67%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.67%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.00%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil2.00%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter2.00%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.33%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.33%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.33%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.33%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.33%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.33%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.67%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.67%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.67%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.67%
PalsaEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa0.67%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.67%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.67%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.67%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.67%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.67%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300001686Grasslands soil microbial communities from Hopland, California, USAEnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004082Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004139Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF230 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009522Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaGEnvironmentalOpen in IMG/M
3300009683Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaGEnvironmentalOpen in IMG/M
3300009700Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012201Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300014495Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaGEnvironmentalOpen in IMG/M
3300014657Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaGEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016750Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018006Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4EnvironmentalOpen in IMG/M
3300018038Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10EnvironmentalOpen in IMG/M
3300018042Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019278Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022502Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022521Peat soil microbial communities from Stordalen Mire, Sweden - 717 E3 20-24EnvironmentalOpen in IMG/M
3300022525Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022528Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022715Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022716Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022722Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022734Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU3Host-AssociatedOpen in IMG/M
3300023012Spruce litter microbial communities from Bohemian Forest, Czech Republic - CLU4EnvironmentalOpen in IMG/M
3300025604Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027768Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300028036Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE2Host-AssociatedOpen in IMG/M
3300028560Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_2EnvironmentalOpen in IMG/M
3300028731Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028747Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300028871Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_1EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029908II_Bog_E1 coassemblyEnvironmentalOpen in IMG/M
3300029913III_Bog_N3 coassemblyEnvironmentalOpen in IMG/M
3300029918Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E2_1EnvironmentalOpen in IMG/M
3300029999I_Palsa_E3 coassemblyEnvironmentalOpen in IMG/M
3300030629Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO153-ARE093SO (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030706Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG (v2)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031090Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031122Oak Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031247Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaGHost-AssociatedOpen in IMG/M
3300031258Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1EnvironmentalOpen in IMG/M
3300031474Fir Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032896Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1043962523300001593Forest SoilASKFTEHYESARFGGSAEDAQRLPELYEEILTTAREK*
C688J18823_1088691123300001686SoilREPVARFTSVYESARFGNSPGDASRLPELYEEVQAATRDR*
JGIcombinedJ51221_1003063613300003505Forest SoilEFVRKIEDNRLRLPVAQFTNVYESARFGNSADDARQLPRLFGEVEAAMRSE*
JGIcombinedJ51221_1005410033300003505Forest SoilIEDSRLREPVARFTEVYESARFGNSIDDAQRLPELYEEVELATRTR*
Ga0062384_10088837323300004082Bog Forest SoilRFSVGRFTNAYESARFGNSSDDARRLPELYEEVETAAKK*
Ga0062387_10045067513300004091Bog Forest SoilRTQVGRFTDAYESARFGNSSDDARRLPELYEEVELATRK*
Ga0058897_1114444123300004139Forest SoilRVIQNEQLRSRVGRFTDAYESARFGNSADDALLLPELFEEVESATKK*
Ga0062386_10009473013300004152Bog Forest SoilDSRLREPVARFTQVYESARFGNSIDDAQRLPELYEEVEMATRAR*
Ga0062386_10069807313300004152Bog Forest SoilDSRLREPVARFTQVYESARFGNSADDALRLPGLYQEVESAARAR*
Ga0070714_10234377813300005435Agricultural SoilQRLREPVARFTAVYESARFGNSGEDAQRLPELYEEVEAATRSE*
Ga0070741_1050585013300005529Surface SoilVAAFTNSYEQARFADSPDDARQLPELYEQISSAPKS*
Ga0070732_1080065413300005542Surface SoilPVARFTEVYESARFGNSIEDAQRLPELFAEVELATRTR*
Ga0066705_1073836423300005569SoilEFLKKIPDNQLREPVARFTEVYESARFGNSIEDAQRLPELFEEVEIASRSH*
Ga0070762_1009588933300005602SoilQEFVRAIRDEPLRLRVGQFTDAYESARFGNSSEDAVRLPELLEEVESATRK*
Ga0070762_1102885213300005602SoilVARFTNAYEAARFGSSPDHARQLPELYEEVELAAKN*
Ga0070764_1014508823300005712SoilVARFTNAYEAARFGSSPDHARQLPELYEEVQLAAKN*
Ga0066903_10375520023300005764Tropical Forest SoilEFVARIDDAALRQRAARFTRVYEAARFGNSSEEAARLPELYDELANMR*
Ga0066903_10484687513300005764Tropical Forest SoilRLREPIARFTQVYESARFGNSAEDAQRLPELYGEVELATRFE*
Ga0075028_10064783023300006050WatershedsEPVARFTQVYESARFGNSSEDAQRLPELCEEVELAAKK*
Ga0075030_10044271313300006162WatershedsDRLREPVARFTNAYEAARFGDSAEDVKRLPELFEEVESATRTR*
Ga0070716_10036553213300006173Corn, Switchgrass And Miscanthus RhizosphereAEFTRNYESARFGNSAEAAQYLPELYEEVLSATPSR*
Ga0070765_10044611413300006176SoilGLRAQVGRFTDAYESARFGNSADDALRLPQLYEEMESAGRLR*
Ga0070765_10046237813300006176SoilERLRTKVGQFTDAYESARFGNSGDDARRLPELFEEVESATKK*
Ga0070765_10122838713300006176SoilDNRLREPVARFTDVYESARFGNSVADAQRLAELYAEVESATRGR*
Ga0068871_10088655833300006358Miscanthus RhizosphereLRDRVSDFTNAYEAARFGESPDHAQRLPELYEEIVAVETRD*
Ga0099792_1008865233300009143Vadose Zone SoilAQEFVGVIEDVRLRTQVGKFTDAYESARFGNSPDDAVRLPELYEAVEAATRK*
Ga0116218_132354713300009522Peatlands SoilQEFVKKIEDSRLREPVARFTAVYESARFGNSVDDAQRLPELYEEVESAARTR*
Ga0116224_1019664733300009683Peatlands SoilRFTAVYESARFGNSVDDAQRLPELYEEVETATRAR*
Ga0116217_1019472133300009700Peatlands SoilTAQEFVRVIGDERIRIPVGRFTDAYESARFGNSPDDAQRLPELYEEVELATRK*
Ga0116101_109444323300009759PeatlandIPDNDLRIPIEKFTDAYESARFGNSAENAQRLPELFEEVELVSKK*
Ga0116134_118769323300009764PeatlandDERLRTPVGRFTDAYESARFGNSSEDAMRLPELYEDVQLATKK*
Ga0126373_1135973523300010048Tropical Forest SoilQEFLKKIDDDRLREPIARFTRVYESARFGNSANDAQRLPALYEAVELATRME*
Ga0126383_1309879323300010398Tropical Forest SoilEPVARFTQVYESARFGNSAEDAQRLPELYQKVELATRFE*
Ga0150983_1005553923300011120Forest SoilRVGRFTDAYESARFGNSPDDALRLPELFEEVELASKK*
Ga0150983_1016207713300011120Forest SoilARFTDAYESARFGDSAEDVKRLPELYEEVESATRTR*
Ga0150983_1052845823300011120Forest SoilVEKIDNATLREPVARFTRVYESARFGNSTDDAQRLPELCEEVEVASKK*
Ga0150983_1289060513300011120Forest SoilRFTAVYESARFGNCAEDAQRLPELYEEVELATRTR*
Ga0150983_1312211213300011120Forest SoilPVARFTQVYESARFGDSADDAKRLPALYEEVEQATRTR*
Ga0150983_1438283413300011120Forest SoilGRFTNAYESARFGNSAEDAQRLPGLYEEVETATRK*
Ga0137393_1001650773300011271Vadose Zone SoilEDERLRIQVARFTDAYESARFGNSPDDALRLPDLYEEVEGATKK*
Ga0137393_1120771813300011271Vadose Zone SoilKIEDSRLREPVARFTAVYESARFGNSPDDAQRLPELYEEVELATRSR*
Ga0137365_1093037313300012201Vadose Zone SoilRIEDTRLREPVARFTTVYESARFGNSPEDAQRLPELYEEVESATRTR*
Ga0137398_1066581433300012683Vadose Zone SoilADERLRERVATFTEAYESARFGNSVDDAERLPELYEEVELASRR*
Ga0137404_1078602313300012929Vadose Zone SoilEPVARFTVVYESARFGNSADDAQRLPELYEEVELATRRR*
Ga0164298_1063458813300012955SoilEFVQKIEDDRLRVPVARFTDVYESARFGNSAEDALRLPDLYEEVEAAMQSD*
Ga0164306_1142819813300012988SoilDQRLRQPVARFTAVYESARFGNSVEDASRLPELYAEVAAATRDR*
Ga0157372_1334631623300013307Corn RhizosphereQDPVARFTRVYESARFGNSVEDASRLPELYAEVAAATRDR*
Ga0181537_1007101413300014201BogLRTRVGEFTDAYESARFGNSADDALRLPELYGEVELATKK*
Ga0182015_1034417213300014495PalsaEFVGVIEDERLRTQVERFTVAYESARFGNSAEDALRLPELYGEVELATKK*
Ga0181522_1053061523300014657BogERLRLRVGRFTDAYESARFGNSSNDAQRLPELYEEVELASKK*
Ga0182034_1122977223300016371SoilSEAETPQEFVCKIPHIRLRLPVEHFTNVYESARFGNSSQDAGRLPELYEEVEAATRSE
Ga0181505_1079278323300016750PeatlandPVARFTQVYESARFGNSIDDAQRLPELYEEVELATRTR
Ga0187819_1040848923300017943Freshwater SedimentAKFTQHYESARFGGSAEDAQRLPELYEEVLATVRR
Ga0187847_1049712413300017948PeatlandRVGRFTDAYESARFGNSSNDAQRLPELYEEVESAVQK
Ga0187779_1023053623300017959Tropical PeatlandKIQDRRLREPVSRFTDVYESARFGNSVEDAQRLPELYEEVEAATRSE
Ga0187781_1033747223300017972Tropical PeatlandVARFTDAYEVARFGNSADDALRLPELYEAVELAMKE
Ga0187782_1076172613300017975Tropical PeatlandISDEQLRSRVGNFTDAYEAARFGNSPRQAQQLPRLYEEVALAARK
Ga0187782_1082358113300017975Tropical PeatlandKIDNTHLREPVERFTEVYESARFGNSAEAAQRLPELYEEVVSAARER
Ga0187804_1047956113300018006Freshwater SedimentQEFVKKIEDSRLREPVARFTQVYESARFGNSAEDVKRLPELYEEVETAARTR
Ga0187855_1015843213300018038PeatlandKIEDTRLREPVSRFTDVYESARFGNSAEDAQRLPELYEEVELAAKGR
Ga0187855_1056523013300018038PeatlandEFVRVITDERLRGRVERFTDAYESARFGNSTEDALRLPELCEEVELATRK
Ga0187871_1003995213300018042PeatlandRGRVERFTDAYESARFGNSTEDALRLPELCEEVELATRK
Ga0187784_1028759933300018062Tropical PeatlandDDARLRGPVAHFTEVYESARFGNSPEDVQRLPELYEAVESATRD
Ga0187772_1133960313300018085Tropical PeatlandSQINDARLRIPVAHFTEVYESARFGNSPEHVRQLPELYEAVELAIKE
Ga0187769_1138644023300018086Tropical PeatlandEPVARFTRVYESARFGNSAEDAQRLPQLCEEVELATRKR
Ga0187771_1090063123300018088Tropical PeatlandFVRNIEDARLRAPVARFTQVYESARFGNSADDALKLPELCEEVESATRA
Ga0187770_1100779223300018090Tropical PeatlandQRIEDARLREPVARFTDAYEAARFGESADEIRRLPELYEDVELAARK
Ga0187800_181022613300019278PeatlandPRLREPVARFTEVYESARFGNSAEAVQCLPELYKQIELATREG
Ga0210406_1130037413300021168SoilSRLREPVARFTAVYESARFGNSVDDAQRLPELYEEVESATRSR
Ga0210405_1075925313300021171SoilGEFTDAYESARFGNSSEDAVRLPELYEEVELATKK
Ga0210393_1023336113300021401SoilRLRTPVRRFTDAYESARFGNSSDDALRLPELFEEVELATKK
Ga0210393_1028325913300021401SoilVARFTAVYESARFGNSVDDAQRLPELYEEVESATRSR
Ga0210393_1060576123300021401SoilKIEDTRLREPVARFTQVYESARFGNSLDDAQRLPELYEEVELATRNR
Ga0210386_1018299013300021406SoilQEFVKKIEDSRLREPVARFTEVYESARFGNSIDDAQRLPELYEEVELATRTR
Ga0210394_1144036823300021420SoilTQVERFTEAYESARFGNSAEDALRLPELYQEVELATKK
Ga0210384_1089869523300021432SoilVIEDERLRTKVGQFTEAYESARFGNSGDDAQRLPALFEEVESATKQ
Ga0210391_1050301523300021433SoilVHQFTEAYESARFGQSQEDVQRLPELYEEVELATRK
Ga0210392_1006291913300021475SoilFVEKIEDKSLREPVARFTAVYESARFGNSADDAQRLPELYEEVELATRFR
Ga0210402_1043704913300021478SoilVARFTYVYESARFGNSTEDAQRLPDLFEEVELASKK
Ga0210410_1166138423300021479SoilQRVAQFTAAYESARFGNSTDDARRLSELYEEVESETQR
Ga0126371_1139218823300021560Tropical Forest SoilLKKIDDDRLREPIARFTQIYESARFGNSAEDAQRLPELYEEVELATRFE
Ga0242646_101088123300022502SoilEDTRLREPVARFTQVYESARFGNSLDDAQRLPELYEEVELATRNR
Ga0224541_100620523300022521SoilRLRKRVSRFTDAYESARFGNSADDAVQLPELYDDVEAAAKK
Ga0242656_102509013300022525SoilKIEDNRLRLLVTQFTSVYESARFGNSADDARQLPRLFGEVEAAMRSE
Ga0242669_103531413300022528SoilKKIEDSRLREPVARFTEVYESARFGNSIDDAQRLPELYEEVELATRTR
Ga0242655_1016355523300022532SoilVRVIQNEQLRSRVGRFTDAYESARFGNSADDALLLPELFEEVESATKK
Ga0242678_101824213300022715SoilSRLREPVARFTEVYESARFGNSIDDAQRLPELYEEVELATRTR
Ga0242673_108496023300022716SoilVQKIEDTRLREPVARFTQVYESARFGNSLDDAQRLPELYEEVELATRNQ
Ga0242666_106949013300022721SoilARVGRFTDAYESARFGNSPDDALRLPELFEEVELGSKK
Ga0242657_111589913300022722SoilARFTAVYESARFGNSVDDAQRLPELYEEVESAARSR
Ga0224571_10253733300022734RhizosphereERLRTRVGRFTDAYESARFGNSSDDAQRLPELYEDVELATKK
Ga0228597_10084633300023012Plant LitterEPVARFTQVYESARFGDSADDAKRLPELYEEVEQATRTR
Ga0207930_107608213300025604Arctic Peat SoilARFTEAYEAARFGDSAEDVKRLPELYEEVESATRTR
Ga0207664_1078374023300025929Agricultural SoilRLRQPVARFTEVYESARFGNSVEDASRLPELYAEVAAATRDR
Ga0207664_1092435223300025929Agricultural SoilRFTEVYESARFGNSVEDASRLPELYAEVAAATRDR
Ga0209839_1000579063300026294SoilPQEFVKKIEDNRLREPVARFTDVYESARFGNSVEDAQRLAELYEEVESATRGR
Ga0209806_132727423300026529SoilIEDNRLRLLVTQFTSVYESARFGNSADDARELPRLFGEVEAAMRSE
Ga0208365_105030413300027070Forest SoilKIEDNRLRLPVAQFTNVYESARFGNSADDARQLPRLFGEVEAAMRSE
Ga0209736_102340913300027660Forest SoilEPVARFTQVYESARFGNSVDDALRLPELYEEVESATRSR
Ga0209772_1017954723300027768Bog Forest SoilVGRFTDAYESARFGNSSDGALRLPELYEEVELAAKK
Ga0209580_1015605913300027842Surface SoilRVKVERFTEAYESARFGNSSPDAQRLPELYDQVELTTKQ
Ga0209579_1010743713300027869Surface SoilQIEDTRLRQPVARFTDVYESARFGNCAEDARRLGDLYQEVEAATRDR
Ga0209169_1012113113300027879SoilEGLRAQVGRFTDAYESARFGNSADDALRLPQLYEEMESAGRLR
Ga0209169_1035204413300027879SoilQEFVKNIEDARLRAPVARFTDVYESARFGNSTDDAQKLPELFEEVEVAAREK
Ga0209415_1060090723300027905Peatlands SoilQEFVKKIDDPRLREPVARFTNVYESARFGNSAQDVQRLPELYEEVELATRK
Ga0209006_1055801323300027908Forest SoilRLREPVARFTQVYESARFGNSAEDVQRLPELYEEVESATRTR
Ga0265355_101270413300028036RhizosphereERLRVRVGRFTDAYESARFGNSSNDAQRLPELYDEVELASKK
Ga0302144_1029879923300028560BogVSRFTDAYESARFGNSADDAMQLPELYEEVEAAAKK
Ga0302301_107502223300028731PalsaVSRFTDAYESARFGNSADDAVQLPELYDDVEAAAKK
Ga0302219_1041719923300028747PalsaGKFTDAYESARFGNSSDDARRLPELYEEVELAAKK
Ga0302225_1002723243300028780PalsaERLRKRVSRFTDAYESARFGNSADDAVQLPELYDDVEAAAKK
Ga0302230_1031125313300028871PalsaPVARFTEVYESARFGDSADDVKRLPELYEEVEQATRTR
Ga0308309_1017747513300028906SoilGLRAQVGRFTDAYESARFGNSADDALRLPQLYEEMESAGRLR
Ga0308309_1040576813300028906SoilRVGQFTDAYESARFGNSSEDAVRLPELLEEVESATRK
Ga0311341_1009690713300029908BogIADEPLRARVGRFTNAYESARFGDSSEEARRLPELFEEVEMATKK
Ga0311362_1010016813300029913BogRVGRFTNAYESARFGDSSEEARRLPELFEEVEMATKK
Ga0302143_117471223300029918BogQEFVRVIEDDRLRAPVGRFTDAYESARFGNSSDDALRLPELYEEVELAAKK
Ga0311339_1150224323300029999PalsaSLRQRVERFTVVYESARFGHSAEDAGKLEECFDEVELAARR
Ga0210268_109334213300030629SoilHTRVGQFTDAYESARFGNSSEDAVRLPELLEAVESATKK
Ga0310039_1017665213300030706Peatlands SoilRFTQVYESARFGNSIDDAQRLPELYEEVEMATRTR
Ga0310038_1016748213300030707Peatlands SoilDERIRIPVGRFTDAYESARFGNSPDDAQRLPELYEEVELATRK
Ga0265760_1025503613300031090SoilEQVARFTQVYESARFGNSAEDVKRLPELYEEVETAARGR
Ga0170822_1473037723300031122Forest SoilRNRVEAFTEAYESARFGDSPDDARRLPELYGEVEAANKK
Ga0170824_10637210323300031231Forest SoilVKKIEDTRLREPVARFTQVYESARFGNSVDDAQRLPELYEEVESATRSR
Ga0170824_10775649513300031231Forest SoilIEDARLREPVARFTQVYESARFGNSVDDAQRLPELYEEVELATKTR
Ga0170824_12820256423300031231Forest SoilERFTSAYESARFGNSANDALRLPELYEEVEAAGKK
Ga0265340_1048827113300031247RhizosphereEPVTRFTEIYESARFGNSPDDAKRLPELYEAVETATRPQK
Ga0302318_1001987443300031258BogLRARVGRFTNAYESARFGDSSEEARRLPELFEEVEMATKK
Ga0170818_10295218423300031474Forest SoilQEFVRKIEDNRLRLLVTQFTSVYESARFGNSAEDACQLPRLFGEVEAAMRSE
Ga0302326_1261500713300031525PalsaDEQLRKLVGRFTDAYESARFGNSSDDARRLPELYEEVELVAKK
Ga0310686_10019498933300031708SoilRLPVARFTDVYESARFGNSADDAQKLPELFEEVELATRER
Ga0307476_1000805813300031715Hardwood Forest SoilRFTAVYESARFGNSPDDAQRLPELYEEVELATRTR
Ga0307476_1099666613300031715Hardwood Forest SoilQEFARQIDDARLRQPVARFTDVYESARFGNSSEDARRLEELYQEVEAATRDR
Ga0307469_1074558213300031720Hardwood Forest SoilEDGRLRTQVARFTEAYESARFGNSPEDALRLPELYEEVEASIRR
Ga0307477_1058502613300031753Hardwood Forest SoilVEQFTNVYESARFGNSAEDARQLPRLFGEVEAAMRSE
Ga0307477_1098490613300031753Hardwood Forest SoilEDQRLRTRVGRFTDAYESARFGNSADDALRLPELFEQVELATKK
Ga0307475_1075963613300031754Hardwood Forest SoilLREPVARFTAVYESARFGNSPDDAQRLPELYEEVELATRTR
Ga0307475_1113007113300031754Hardwood Forest SoilAHFTDVYESARFGNSAEDARRLPELYEVVESATKG
Ga0307475_1131341323300031754Hardwood Forest SoilRVIPEETLRVRVQQFTEAYESARFGQSQEDVQRLPELFAGVELATRK
Ga0307478_1084711413300031823Hardwood Forest SoilGDERLRLRVGRFTDAYESARFGNSSNDAQRLPELYEEVELASKK
Ga0308175_10127676723300031938SoilVARFTSVYESARFGNSPGDASRLPELYEEVQAATRDR
Ga0307479_1096904213300031962Hardwood Forest SoilSLRARVESFTAAYESARFGNSADDALRLPELYEEVELASRK
Ga0348332_1117970823300032515Plant LitterQQFTEAYESARFGQSQEDVRRLPELYEEVELATKK
Ga0348332_1178840523300032515Plant LitterLRARVGRFTDAYESARFGNSPDDALRLPELFEEVELGSKK
Ga0348332_1219932523300032515Plant LitterVHRIEDVRLRLRVEEFTKAYESARFGNSSQDALRLSELFEEVELATRK
Ga0335080_1228949323300032828SoilLRVPVGLFTEVYESARFGNSAEDVQRLPELYEAVELAARE
Ga0335075_1061303513300032896SoilPLRRFTSTYESARFGNSSEAAKRLPELLEEVETATK
Ga0335083_1032713223300032954SoilVARFTDVYESARFGNSREDARRLPELYEEVLTATRSD
Ga0335073_1078614223300033134SoilRLREPVARFTDVYESARFGNSAEDARRLPDLYEEVLTATRSG
Ga0370501_0400744_29_1573300034195Untreated Peat SoilLLEPVTRFTEIYESARFGNSPDDAKRLPELYEAVETATRPQK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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