NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F047251

Metagenome / Metatranscriptome Family F047251

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F047251
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 45 residues
Representative Sequence MWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNAEDL
Number of Associated Samples 134
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 98.00 %
% of genes near scaffold ends (potentially truncated) 98.00 %
% of genes from short scaffolds (< 2000 bps) 96.67 %
Associated GOLD sequencing projects 133
AlphaFold2 3D model prediction Yes
3D model pTM-score0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (59.333 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(31.333 % of family members)
Environment Ontology (ENVO) Unclassified
(34.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(42.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 47.14%    β-sheet: 0.00%    Coil/Unstructured: 52.86%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.36
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 150 Family Scaffolds
PF08502LeuA_dimer 44.67
PF06808DctM 3.33
PF07813LTXXQ 1.33
PF01925TauE 0.67
PF05015HigB-like_toxin 0.67
PF01548DEDD_Tnp_IS110 0.67
PF16868NMT1_3 0.67
PF03976PPK2 0.67
PF13549ATP-grasp_5 0.67
PF13458Peripla_BP_6 0.67
PF09608Alph_Pro_TM 0.67
PF00078RVT_1 0.67
PF13358DDE_3 0.67
PF00005ABC_tran 0.67
PF01042Ribonuc_L-PSP 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 150 Family Scaffolds
COG0119Isopropylmalate/homocitrate/citramalate synthasesAmino acid transport and metabolism [E] 44.67
COG3678Periplasmic chaperone Spy, Spy/CpxP familyPosttranslational modification, protein turnover, chaperones [O] 5.33
COG0251Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 familyDefense mechanisms [V] 0.67
COG0730Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 familyInorganic ion transport and metabolism [P] 0.67
COG2326Polyphosphate kinase 2, PPK2 familyEnergy production and conversion [C] 0.67
COG3547TransposaseMobilome: prophages, transposons [X] 0.67
COG3549Plasmid maintenance system killer proteinDefense mechanisms [V] 0.67


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms59.33 %
UnclassifiedrootN/A40.67 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2035918004|FACENC_F56XM5W01EIMCWAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
2088090014|GPIPI_16980100Not Available1043Open in IMG/M
2170459003|FZN2CUW02GZ9HVAll Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria511Open in IMG/M
3300000579|AP72_2010_repI_A01DRAFT_1064668All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria539Open in IMG/M
3300000597|AF_2010_repII_A1DRAFT_10163879Not Available531Open in IMG/M
3300000655|AF_2010_repII_A100DRAFT_1086164All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria551Open in IMG/M
3300002075|JGI24738J21930_10016890All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae1537Open in IMG/M
3300003505|JGIcombinedJ51221_10283753All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria673Open in IMG/M
3300003505|JGIcombinedJ51221_10471188All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii507Open in IMG/M
3300004070|Ga0055488_10028591All Organisms → cellular organisms → Bacteria1097Open in IMG/M
3300005160|Ga0066820_1004362All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales779Open in IMG/M
3300005327|Ga0070658_10486768All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1065Open in IMG/M
3300005363|Ga0008090_15812331All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria523Open in IMG/M
3300005367|Ga0070667_101170090All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium719Open in IMG/M
3300005445|Ga0070708_102128060All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria519Open in IMG/M
3300005471|Ga0070698_101928696All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales544Open in IMG/M
3300005552|Ga0066701_10078577Not Available1886Open in IMG/M
3300005557|Ga0066704_10536755All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales764Open in IMG/M
3300005574|Ga0066694_10040501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2102Open in IMG/M
3300005615|Ga0070702_100607322All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria821Open in IMG/M
3300005764|Ga0066903_105597373All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria661Open in IMG/M
3300006028|Ga0070717_10943996Not Available785Open in IMG/M
3300006173|Ga0070716_101668959All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii525Open in IMG/M
3300006574|Ga0074056_10014205All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae666Open in IMG/M
3300006845|Ga0075421_101217962All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales838Open in IMG/M
3300006854|Ga0075425_101028211Not Available940Open in IMG/M
3300006871|Ga0075434_102103457Not Available569Open in IMG/M
3300006871|Ga0075434_102183366All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria558Open in IMG/M
3300006904|Ga0075424_101406842All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales741Open in IMG/M
3300006949|Ga0075528_10076710Not Available870Open in IMG/M
3300006969|Ga0075419_10775243All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria685Open in IMG/M
3300009100|Ga0075418_12299460Not Available588Open in IMG/M
3300009100|Ga0075418_13092026All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria507Open in IMG/M
3300009137|Ga0066709_100739006All Organisms → cellular organisms → Bacteria → Proteobacteria1419Open in IMG/M
3300009167|Ga0113563_11888960Not Available712Open in IMG/M
3300010042|Ga0126314_11343948All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria536Open in IMG/M
3300010043|Ga0126380_10463236Not Available962Open in IMG/M
3300010043|Ga0126380_11297169All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria633Open in IMG/M
3300010043|Ga0126380_12125499All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium517Open in IMG/M
3300010046|Ga0126384_12511548All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium500Open in IMG/M
3300010047|Ga0126382_11749643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria582Open in IMG/M
3300010048|Ga0126373_12243687All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria607Open in IMG/M
3300010139|Ga0127464_1177379All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium602Open in IMG/M
3300010329|Ga0134111_10150447Not Available921Open in IMG/M
3300010361|Ga0126378_10351912All Organisms → cellular organisms → Bacteria → Nitrospirae1582Open in IMG/M
3300010376|Ga0126381_102576731All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria728Open in IMG/M
3300011271|Ga0137393_11615889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria537Open in IMG/M
3300012202|Ga0137363_10977214Not Available719Open in IMG/M
3300012202|Ga0137363_11799043All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria505Open in IMG/M
3300012205|Ga0137362_10574698All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305973Open in IMG/M
3300012208|Ga0137376_11281867Not Available623Open in IMG/M
3300012209|Ga0137379_11789937Not Available509Open in IMG/M
3300012210|Ga0137378_11324836All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria635Open in IMG/M
3300012354|Ga0137366_10232992All Organisms → cellular organisms → Bacteria1369Open in IMG/M
3300012362|Ga0137361_10732202All Organisms → cellular organisms → Bacteria902Open in IMG/M
3300012362|Ga0137361_10784341All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium ADurb.BinA305868Open in IMG/M
3300012363|Ga0137390_11025125All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria776Open in IMG/M
3300012532|Ga0137373_10964615All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7620Open in IMG/M
3300012909|Ga0157290_10416955All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria528Open in IMG/M
3300012960|Ga0164301_10764050Not Available735Open in IMG/M
3300012976|Ga0134076_10528900All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium542Open in IMG/M
3300012984|Ga0164309_11837516All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria520Open in IMG/M
3300012985|Ga0164308_12077980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria529Open in IMG/M
3300012986|Ga0164304_10297629Not Available1104Open in IMG/M
3300012989|Ga0164305_11089587All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales685Open in IMG/M
3300015242|Ga0137412_10938972All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300015372|Ga0132256_101681156Not Available744Open in IMG/M
3300015373|Ga0132257_103030490Not Available612Open in IMG/M
3300016294|Ga0182041_10528057Not Available1028Open in IMG/M
3300016319|Ga0182033_10123739All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1950Open in IMG/M
3300016319|Ga0182033_10702778Not Available885Open in IMG/M
3300016319|Ga0182033_11888170Not Available543Open in IMG/M
3300016341|Ga0182035_10591320All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria958Open in IMG/M
3300016371|Ga0182034_10278838All Organisms → cellular organisms → Bacteria1331Open in IMG/M
3300016371|Ga0182034_10364372All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1177Open in IMG/M
3300016387|Ga0182040_10564453Not Available917Open in IMG/M
3300018066|Ga0184617_1233240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria550Open in IMG/M
3300018466|Ga0190268_11082212All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales650Open in IMG/M
3300020579|Ga0210407_10847723All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales703Open in IMG/M
3300021168|Ga0210406_10554081Not Available903Open in IMG/M
3300021168|Ga0210406_11274111All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium531Open in IMG/M
3300021178|Ga0210408_10523865All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales941Open in IMG/M
3300021344|Ga0193719_10039414Not Available2047Open in IMG/M
3300021432|Ga0210384_10655070All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria941Open in IMG/M
3300021475|Ga0210392_10860495Not Available678Open in IMG/M
3300025915|Ga0207693_10556572Not Available894Open in IMG/M
3300025924|Ga0207694_11091831Not Available675Open in IMG/M
3300025928|Ga0207700_10210728All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1643Open in IMG/M
3300025928|Ga0207700_11581930All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria580Open in IMG/M
3300025929|Ga0207664_11559064All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium582Open in IMG/M
3300025932|Ga0207690_10155284Not Available1700Open in IMG/M
3300026285|Ga0209438_1176656All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales563Open in IMG/M
3300026328|Ga0209802_1199854Not Available770Open in IMG/M
3300026331|Ga0209267_1101611Not Available1223Open in IMG/M
3300026548|Ga0209161_10161433Not Available1285Open in IMG/M
3300026942|Ga0207783_1010533Not Available933Open in IMG/M
3300027371|Ga0209418_1093756Not Available539Open in IMG/M
3300027812|Ga0209656_10111287All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1424Open in IMG/M
3300027874|Ga0209465_10389899Not Available697Open in IMG/M
3300027910|Ga0209583_10260158Not Available770Open in IMG/M
3300028712|Ga0307285_10065154Not Available926Open in IMG/M
3300028715|Ga0307313_10162085Not Available691Open in IMG/M
3300028721|Ga0307315_10225826All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium584Open in IMG/M
3300028878|Ga0307278_10465388All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria553Open in IMG/M
3300031543|Ga0318516_10031329All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Chelativorans2810Open in IMG/M
3300031546|Ga0318538_10302091Not Available862Open in IMG/M
3300031547|Ga0310887_11006089All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium532Open in IMG/M
3300031549|Ga0318571_10276684All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium624Open in IMG/M
3300031562|Ga0310886_10324162Not Available887Open in IMG/M
3300031564|Ga0318573_10372778Not Available767Open in IMG/M
3300031573|Ga0310915_10484955Not Available878Open in IMG/M
3300031573|Ga0310915_10997875Not Available584Open in IMG/M
3300031640|Ga0318555_10607437All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria592Open in IMG/M
3300031679|Ga0318561_10124792All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Magnetospirillum1370Open in IMG/M
3300031681|Ga0318572_10488365Not Available733Open in IMG/M
3300031681|Ga0318572_10947702All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria511Open in IMG/M
3300031736|Ga0318501_10617492All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria595Open in IMG/M
3300031744|Ga0306918_10213716All Organisms → cellular organisms → Bacteria1459Open in IMG/M
3300031748|Ga0318492_10144346Not Available1197Open in IMG/M
3300031763|Ga0318537_10099539All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1076Open in IMG/M
3300031763|Ga0318537_10099860Not Available1074Open in IMG/M
3300031765|Ga0318554_10835298All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria514Open in IMG/M
3300031768|Ga0318509_10036994All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2423Open in IMG/M
3300031769|Ga0318526_10098549Not Available1165Open in IMG/M
3300031771|Ga0318546_11030642Not Available579Open in IMG/M
3300031777|Ga0318543_10363310All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales648Open in IMG/M
3300031782|Ga0318552_10501467All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria619Open in IMG/M
3300031795|Ga0318557_10424413All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria611Open in IMG/M
3300031797|Ga0318550_10390884Not Available674Open in IMG/M
3300031798|Ga0318523_10077788Not Available1603Open in IMG/M
3300031819|Ga0318568_10415689All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales838Open in IMG/M
3300031821|Ga0318567_10338113Not Available850Open in IMG/M
3300031846|Ga0318512_10095553Not Available1391Open in IMG/M
3300031942|Ga0310916_11397226All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria573Open in IMG/M
3300031943|Ga0310885_10458765Not Available688Open in IMG/M
3300031947|Ga0310909_10454812Not Available1074Open in IMG/M
3300032001|Ga0306922_11054997All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium835Open in IMG/M
3300032009|Ga0318563_10463400Not Available685Open in IMG/M
3300032010|Ga0318569_10377759Not Available660Open in IMG/M
3300032035|Ga0310911_10554703All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria666Open in IMG/M
3300032039|Ga0318559_10296398Not Available750Open in IMG/M
3300032041|Ga0318549_10177546Not Available953Open in IMG/M
3300032043|Ga0318556_10731966All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium514Open in IMG/M
3300032044|Ga0318558_10344206Not Available739Open in IMG/M
3300032051|Ga0318532_10084101Not Available1115Open in IMG/M
3300032059|Ga0318533_10073422Not Available2320Open in IMG/M
3300032068|Ga0318553_10535882All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria613Open in IMG/M
3300032068|Ga0318553_10616065All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria568Open in IMG/M
3300032091|Ga0318577_10288997Not Available784Open in IMG/M
3300033289|Ga0310914_11379771All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria607Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil31.33%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil8.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil8.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.67%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.33%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere5.33%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.33%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.67%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.00%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.00%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil2.00%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.33%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.33%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.67%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.67%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.67%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.67%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.67%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.67%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.67%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.67%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.67%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.67%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.67%
Tropical Rainforest SoilEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil0.67%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2035918004Soil microbial communities from sample at FACE Site 2 North Carolina CO2-EnvironmentalOpen in IMG/M
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2170459003Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cmEnvironmentalOpen in IMG/M
3300000579Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A01EnvironmentalOpen in IMG/M
3300000597Forest soil microbial communities from Amazon forest - 2010 replicate II A1EnvironmentalOpen in IMG/M
3300000655Forest soil microbial communities from Amazon forest - 2010 replicate II A100EnvironmentalOpen in IMG/M
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004070Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300005160Soil and rhizosphere microbial communities from Laval, Canada - mgLMBEnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005363Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005574Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143EnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006949Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost159B-16BEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009167Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010139Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_20_2_8_1 metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010329Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012209Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012532Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012985Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MGEnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300018066Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1EnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025924Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026331Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026942Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)EnvironmentalOpen in IMG/M
3300027371Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027874Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028712Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139EnvironmentalOpen in IMG/M
3300028715Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203EnvironmentalOpen in IMG/M
3300028721Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355EnvironmentalOpen in IMG/M
3300028878Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031549Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031564Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031795Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19EnvironmentalOpen in IMG/M
3300031797Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23EnvironmentalOpen in IMG/M
3300031798Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032039Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACENCA_51745802035918004SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGRQF
GPIPI_033143402088090014SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNTE
E4A_046921602170459003Grass SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSEPTPRTCA
AP72_2010_repI_A01DRAFT_106466823300000579Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQPNAEDLRAFGEARLA
AF_2010_repII_A1DRAFT_1016387913300000597Forest SoilMVAGTAVLAIAGTSLAYAXQRGGRDDMMQGRQLNAEDLRAF
AF_2010_repII_A100DRAFT_108616423300000655Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQPNPEDLRAFGEARLAALK
JGI24738J21930_1001689023300002075Corn RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNSEDMRAFGEA
JGIcombinedJ51221_1028375313300003505Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRGRMEGGERWRPNTEDLRAFGEARLAA
JGIcombinedJ51221_1047118813300003505Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGSQLNAEDLRAFGEARLAALK
Ga0055488_1002859113300004070Natural And Restored WetlandsMWKAIVAGTAALAIAGSTLVYAQHRGRPDSGMRWQQPNIEDM
Ga0066820_100436213300005160SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGVQRWRPNTEDMRAFGE
Ga0070658_1048676823300005327Corn RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFGEARLA
Ga0008090_1581233113300005363Tropical Rainforest SoilMWKAIVAATAALAITSTSLVYAQQAGRRDDVQRWRPSAED
Ga0070667_10117009013300005367Switchgrass RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFGEAR
Ga0070708_10212806023300005445Corn, Switchgrass And Miscanthus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSQPNAEDLRAFGEARLAA
Ga0070698_10192869623300005471Corn, Switchgrass And Miscanthus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAEDVRAFGEARLA
Ga0066701_1007857723300005552SoilMWKAIVVGTAALAIAGTSLVYAQQRSGRDGMMMQRS
Ga0066704_1053675513300005557SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAEDQR
Ga0066694_1004050123300005574SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAED*
Ga0070702_10060732213300005615Corn, Switchgrass And Miscanthus RhizosphereMWKGIVAGTAALAIAGTSLVYAQQRGWHEGRHGPPSIEDMQAFG
Ga0066903_10559737313300005764Tropical Forest SoilMWKAIVAGTAALAIAGTSLVFAQQRSDRDGAQRWRPSMEDLRAFGEARL
Ga0070717_1094399623300006028Corn, Switchgrass And Miscanthus RhizosphereMVAGTAALAIAGTSLAYAQERGGRDGMMQGRQLNAE
Ga0070716_10166895913300006173Corn, Switchgrass And Miscanthus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGRMEGGERWRPNTEDLRAFG
Ga0074056_1001420523300006574SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDLRAFGE
Ga0075421_10121796213300006845Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNTEDMRAFGEARLAA
Ga0075425_10102821113300006854Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNT
Ga0075434_10210345713300006871Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQQQQRGRDGGERWRPSTEDMRA
Ga0075434_10218336623300006871Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMERPQLNADDLRAFGEARLAALKA
Ga0075424_10140684223300006904Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGLDGMMQGRQFSAEDLRAFGEA
Ga0075528_1007671013300006949Arctic Peat SoilMWKTVLAGTAALAIVGTSLVYAQQGPGGPGFMHHGWRPSA
Ga0075419_1077524323300006969Populus RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFGE
Ga0075418_1229946023300009100Populus RhizosphereMWKAVVAGTAVLAIAGTSYVYAQRGGGPDGPRRWQPSMEDMRAFGE
Ga0075418_1309202613300009100Populus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNTEDMRAFGEARLAALKA
Ga0066709_10073900623300009137Grasslands SoilMWKAIVAGTAALAIAGTSLVYAQRGRVVVRQLWQPDTEDFRDGGD
Ga0113563_1188896023300009167Freshwater WetlandsMLMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDM
Ga0126314_1134394813300010042Serpentine SoilMWKGIVAGSAALAIAGSSLVYAQQRGHSEGGRWQPNIEDMRAFGEARIAG
Ga0126380_1046323613300010043Tropical Forest SoilMWKAIVAGTAALAIAGTTFVYAQQREGRDFDRRWQPNAEDMRAFGEARLAALK
Ga0126380_1129716923300010043Tropical Forest SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMVQGRQLNAEDLR
Ga0126380_1212549923300010043Tropical Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQPNAEDLRAF
Ga0126384_1251154823300010046Tropical Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRWQ
Ga0126382_1174964313300010047Tropical Forest SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQPNAEDLRAFGEARLAALK
Ga0126373_1224368723300010048Tropical Forest SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDLRAFG
Ga0127464_117737923300010139Grasslands SoilAGIMWNAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAED*
Ga0134111_1015044723300010329Grasslands SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNAEDL
Ga0126378_1035191213300010361Tropical Forest SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMLQGRQLNARICAH
Ga0126381_10257673123300010376Tropical Forest SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMVQGR
Ga0137393_1161588923300011271Vadose Zone SoilMEENIMWKAIVAGTAALAIAGTTLVYAQQRGRLEGGQRWQPNTEDLRAFGEARLAA
Ga0137363_1097721423300012202Vadose Zone SoilMWKAIVAGTAVLAIAGTSLVYAQQRGGRDGMMMERPQLNAEDLRA
Ga0137363_1179904323300012202Vadose Zone SoilMWKAIVAGTAALAIAGTSLVYAQQQRGGRDFGQRWQPNTEDLRAFGE
Ga0137362_1057469823300012205Vadose Zone SoilMWKAIVAGTAALAIAGTSLVYAQRGRDEGRQRWQPNTEDF
Ga0137376_1128186723300012208Vadose Zone SoilMWKAIAAGTAALAIAGTSLVYAQQRGDRDGIMQGWQP
Ga0137379_1178993713300012209Vadose Zone SoilMWKGIVVGTTALAIVGSSVIYAQERSGRSDGTERWRPSMEDRRAFGEARLAA
Ga0137378_1132483623300012210Vadose Zone SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSEPNAEDLRAFGEARLAAL
Ga0137366_1023299213300012354Vadose Zone SoilMWKAIVVGTAALAIAGTSLVYAQQRGGRDGMMQGWQPNSEDLRAFGEARIAAL
Ga0137361_1073220223300012362Vadose Zone SoilMWKGIVVGTAALAIIGSSVVYAQERSGRPDVTERWRPSMEDRRAFGEARLAA
Ga0137361_1078434123300012362Vadose Zone SoilMWKAIVAGTAALAIAGTSLVYAQRGRDEGRQRWQPNTE
Ga0137390_1102512523300012363Vadose Zone SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGVMQGRQFSA
Ga0137373_1096461513300012532Vadose Zone SoilMWKAIVVGTAVLAIAGTSLVYAQQRGGRDGMMQGWQPNA
Ga0157290_1041695513300012909SoilMLMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFGEAR
Ga0164301_1076405023300012960SoilMWKAIVAGTATLATAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFGEA
Ga0134076_1052890013300012976Grasslands SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAAD*
Ga0164309_1183751613300012984SoilMWKAIVAGIAALAITGTSLVCAQQGGRRDDVQTWQPSAEDLRAFGEARL
Ga0164308_1207798013300012985SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGSQLNAEDLRAFGEARL
Ga0164304_1029762913300012986SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAFG
Ga0164305_1108958713300012989SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPSTEDIRAFGEARLAALK
Ga0137412_1093897213300015242Vadose Zone SoilMWKPIIVGMAALTIASVSLVYAQEPGRRQSGQRWQPSTEDLQAFGEAR
Ga0132256_10168115623300015372Arabidopsis RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPSTEDIRAFGEARL
Ga0132257_10303049023300015373Arabidopsis RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWQ
Ga0182041_1052805713300016294SoilMWKSMVAGTAALAIAGTSLAYAQERGGRDGMVQGRQLNAEDMRAFSEAR
Ga0182033_1012373913300016319SoilMWKPIVAGTAALAIIAGTSLVYAQQSGRLDRGKRWQPNAEDVRAFGEARLASLKAGLT
Ga0182033_1070277823300016319SoilMWKAIVAGTAALAIAGTTLGYAQQHGRMDDGQRWQPS
Ga0182033_1188817023300016319SoilMEGNMWKVIIAGTAALAIASTSLVYAQPDGGRDVGRRWQPGAEDL
Ga0182035_1059132013300016341SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMMQGRQLNAEDLRAFGEAR
Ga0182034_1027883833300016371SoilMWKAIVAATAALAITGTSLVYAQQGGRRDDVQRWRPSAEDLRAFGEA
Ga0182034_1036437213300016371SoilMWKAIVAATAALAITGTSLVYAQQGGRRDDVQRWRPSAEDLR
Ga0182040_1056445313300016387SoilMWKIIITGTAALAIASTSLAYAQQAERLERGHRQQSTEDQRAFA
Ga0184617_123324013300018066Groundwater SedimentMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTEDMRAF
Ga0190268_1108221223300018466SoilMWKAIVAGTAMLAIAGTSLVYAQQRSDRDGAQRWRPSTEDLRAFGEARLAA
Ga0210407_1084772323300020579SoilMWKPITVGMAVLTIASVSLVDAQQPGSRQGGQRWQPSAEDLQAFGEARLAALKA
Ga0210406_1055408123300021168SoilMWKAIIAGTAALAIAGTSLVYAQQRGRMEGGERWRPNTEDLRA
Ga0210406_1127411113300021168SoilMWKAIVAGTAALAIAGTSLVYAQQQRGGRDGMMQGWQPST
Ga0210408_1052386513300021178SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGSQLNAEDLRAFGEARLAALKA
Ga0193719_1003941413300021344SoilMWKAIVAGTAILAIAGTSLVYAQQRSDRDGAQRWRPSI
Ga0210384_1065507023300021432SoilMWKSMVAGTAALAIAGSSLAYAQQRGGRDGMMQGRQLNVED
Ga0210392_1086049523300021475SoilMWKAIVAGTAALAIAGTSLVYAQQRGRMEGGERWRPNTEDLRAFGEAR
Ga0207693_1055657213300025915Corn, Switchgrass And Miscanthus RhizosphereMWKPIVAGTAALAIAGTSLVYAQSRGGPDGGWQRDR
Ga0207694_1109183123300025924Corn RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRP
Ga0207700_1021072833300025928Corn, Switchgrass And Miscanthus RhizosphereMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMMQGRQLNVEDL
Ga0207700_1158193013300025928Corn, Switchgrass And Miscanthus RhizosphereMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMERSQPNAEDLRAFGEARLA
Ga0207664_1155906423300025929Agricultural SoilMLMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPTTEDM
Ga0207690_1015528413300025932Corn RhizosphereMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNTED
Ga0209438_117665613300026285Grasslands SoilMWKAIVAGTAILAIAGTSLVYAQQRSDRDGAQRWRPSTEDLRAFGEARLAALK
Ga0209802_119985413300026328SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSEPNAEDLRAF
Ga0209267_110161113300026331SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAEDQRAFG
Ga0209161_1016143313300026548SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMQGWRPNAEDQRAFGEARLA
Ga0207783_101053313300026942Tropical Forest SoilMWKSIVAGTAALAIVGTSIVYAQRGREEGRERWQPSMEDFRAFGEARL
Ga0209418_109375623300027371Forest SoilMVAGTAALAIAGTSLAYAQQRGGRDGMMQGRQLNVEDLRAFG
Ga0209656_1011128733300027812Bog Forest SoilMWKAIIAGTAALAIASTSLVHAQQADRPDGGQRWQPSAEDLRAFGEARL
Ga0209465_1038989913300027874Tropical Forest SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRS
Ga0209583_1026015823300027910WatershedsMWKLLMVTMAALAIAGSSLVYAQQRDGDRAGGAHFE
Ga0307285_1006515423300028712SoilMWKAIVAGTAILAIAGTSLVYAQQRSDRDGAQRWRPSIEDLR
Ga0307313_1016208513300028715SoilMWKAIVAGTAMLAIAGTSLVYAQQRSDRDGAQRWRPSTEDL
Ga0307315_1022582623300028721SoilMWKAIVAGTAALAIAGTSLVYAQQQRGGRDFGQRWQPN
Ga0307278_1046538823300028878SoilMWKAIVAGTAALAIAGTSLVYAQQQRGGRDFGQRWQPNTED
Ga0318516_1003132913300031543SoilMWKAIVAGTAALAIAGTSLAVAQQRGREGGERWRPSTE
Ga0318538_1030209113300031546SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRFQP
Ga0310887_1100608923300031547SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPNSEDMRAF
Ga0318571_1027668413300031549SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQL
Ga0310886_1032416223300031562SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPN
Ga0318573_1037277813300031564SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLN
Ga0310915_1048495523300031573SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMTQRWQPNAEDL
Ga0310915_1099787523300031573SoilMWKPIVAGTAALAIIAGTSLVYAQQSGRLDRGKRWQPNVEDVRA
Ga0318555_1060743713300031640SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDLR
Ga0318561_1012479213300031679SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAE
Ga0318572_1048836523300031681SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQR
Ga0318572_1094770213300031681SoilMWKAIVVGTAALAIAGTSLVYAQRGRDEGRQRWQPSTEDFRAFGEARLAALKAG
Ga0318501_1061749213300031736SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQPNAED
Ga0306918_1021371623300031744SoilMWKIIITGTAALAIASTSLAYAQQAERPDHGHRQQSTEDQRAVGEARLAALKAGLML
Ga0318492_1014434623300031748SoilMWKSIVAGTAALAIVGTSMVYAQRGREEGRERWQPSMEDFRAFGEAR
Ga0318537_1009953913300031763SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDGMMQGRQLN
Ga0318537_1009986023300031763SoilMWKAIVAGTAVLAIAGTSLVYAQQRGGRDGMMMERSAPNAEDLRAFGEA
Ga0318554_1083529823300031765SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDLRAFGEA
Ga0318509_1003699443300031768SoilMWKSMVAGTAALAIAGTSLAYAQQRGGRDDMVQGRQL
Ga0318526_1009854923300031769SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRFQPNAEDLRAFGEA
Ga0318546_1103064213300031771SoilMWKIIITGTAALAIASTSLAYAQQAERLERGHRQQSTEDQRAFAEARLAALKA
Ga0318543_1036331013300031777SoilMWKAIVAGTAALAIAGTSLAVAQQRGREGGERWRPSTEDLRAFGEARLAALK
Ga0318552_1050146713300031782SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMTQRWQPNAEDLR
Ga0318557_1042441313300031795SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMTQRW
Ga0318550_1039088423300031797SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSQPNAEDLRAFGEARLA
Ga0318523_1007778823300031798SoilMVAGTAALAIAGTSLAYAQQRGGRDDMVQGRQLNAEDLRA
Ga0318568_1041568913300031819SoilMWKAIAAGTAALAIAGTSLAVAQQRGREGGERWRPSTEDLRAFGEAR
Ga0318567_1033811313300031821SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQR
Ga0318512_1009555313300031846SoilMWKSIVAGTAALAIVGTSMVYAQRGREEGRDRWQPSMEDFRAFGEARLAALK
Ga0310916_1139722623300031942SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQGSQLNAEDLRAF
Ga0310885_1045876513300031943SoilMWKAIVAGTATLAIAGTSLVYAQQRSDRDGAQRWRPSTEDIRAFGE
Ga0310909_1045481223300031947SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRFQ
Ga0306922_1105499723300032001SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMTQRWQPNAED
Ga0318563_1046340013300032009SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDL
Ga0318569_1037775913300032010SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDLRAF
Ga0310911_1055470313300032035SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRFQPNAEDLRAFGEARLAA
Ga0318559_1029639823300032039SoilMVAGTAALAIAGTSLAYAQQRAGRDGMMQGRQLNAEDLRAFGEA
Ga0318549_1017754613300032041SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRFQ
Ga0318556_1073196613300032043SoilMWKAIVAGTAALAIAGTSLVYAQQRSGRDGMMMQRLQP
Ga0318558_1034420623300032044SoilMWKAIVAGTAVLAIAGTSLVYAQQRGGRDGMMMERSAPNAE
Ga0318532_1008410123300032051SoilMWKAIVAGTAALAIAGTSLVYAQQRSDRDGMMQQRRQFSADDLRAFGEARLAALK
Ga0318533_1007342223300032059SoilMWKAIVAGTAALAIAGTSLVYAQRGREEGRERWRPSMEDFRAFGEARLAALK
Ga0318553_1053588213300032068SoilMVAGTAALAIAGTSLAYAQQRGGRDGMMQGRQLNAEDLRAFGEARLA
Ga0318553_1061606523300032068SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQRSQPNAEDLRAFGEARLAAL
Ga0318577_1028899713300032091SoilMWKAIVAGTAALAIAGTSLVYAQQRGGRDGMMMQGSQLNAEDLRAFGEARLAALK
Ga0310914_1137977113300033289SoilMWKAIVAGTAVLAIAGTSLVYAQQRGPRDGMMMQRSQLNAEDLRAFGE


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