NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F046980

Metagenome / Metatranscriptome Family F046980

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F046980
Family Type Metagenome / Metatranscriptome
Number of Sequences 150
Average Sequence Length 45 residues
Representative Sequence PRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Number of Associated Samples 128
Number of Associated Scaffolds 150

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 2.67 %
% of genes near scaffold ends (potentially truncated) 97.33 %
% of genes from short scaffolds (< 2000 bps) 94.67 %
Associated GOLD sequencing projects 122
AlphaFold2 3D model prediction Yes
3D model pTM-score0.51

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (44.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous
(18.667 % of family members)
Environment Ontology (ENVO) Unclassified
(58.667 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(62.667 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.29%    β-sheet: 0.00%    Coil/Unstructured: 55.71%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.51
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 150 Family Scaffolds
PF13328HD_4 12.67
PF00004AAA 2.00
PF04545Sigma70_r4 1.33
PF04542Sigma70_r2 1.33
PF14902DUF4494 0.67

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 150 Family Scaffolds
COG0568DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)Transcription [K] 1.33
COG1191DNA-directed RNA polymerase specialized sigma subunitTranscription [K] 1.33
COG1595DNA-directed RNA polymerase specialized sigma subunit, sigma24 familyTranscription [K] 1.33
COG4941Predicted RNA polymerase sigma factor, contains C-terminal TPR domainTranscription [K] 1.33


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms56.00 %
UnclassifiedrootN/A44.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001839|RCM40_1082426Not Available534Open in IMG/M
3300001938|GOS2221_1002042All Organisms → cellular organisms → Bacteria1755Open in IMG/M
3300002408|B570J29032_109238709All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300002483|JGI25132J35274_1076566Not Available695Open in IMG/M
3300003277|JGI25908J49247_10054437Not Available1037Open in IMG/M
3300004097|Ga0055584_101279950All Organisms → cellular organisms → Bacteria764Open in IMG/M
3300005527|Ga0068876_10746772Not Available520Open in IMG/M
3300005528|Ga0068872_10227039Not Available1055Open in IMG/M
3300005582|Ga0049080_10041348All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1599Open in IMG/M
3300006026|Ga0075478_10039391All Organisms → Viruses → Predicted Viral1563Open in IMG/M
3300006026|Ga0075478_10085075All Organisms → Viruses → Predicted Viral1016Open in IMG/M
3300006029|Ga0075466_1089788All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300006738|Ga0098035_1231318All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300006750|Ga0098058_1136221All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300006752|Ga0098048_1141048All Organisms → cellular organisms → Bacteria720Open in IMG/M
3300006753|Ga0098039_1038195All Organisms → cellular organisms → Bacteria1698Open in IMG/M
3300006790|Ga0098074_1101029All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300006793|Ga0098055_1376683Not Available526Open in IMG/M
3300006802|Ga0070749_10018567All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4427Open in IMG/M
3300006802|Ga0070749_10234656All Organisms → Viruses → Predicted Viral1043Open in IMG/M
3300006805|Ga0075464_10672882Not Available639Open in IMG/M
3300006924|Ga0098051_1190628Not Available537Open in IMG/M
3300006928|Ga0098041_1287525Not Available523Open in IMG/M
3300007229|Ga0075468_10120193Not Available816Open in IMG/M
3300007234|Ga0075460_10196964Not Available687Open in IMG/M
3300007344|Ga0070745_1172260All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage811Open in IMG/M
3300007346|Ga0070753_1107104All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1086Open in IMG/M
3300007542|Ga0099846_1097663All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1083Open in IMG/M
3300007542|Ga0099846_1104840Not Available1039Open in IMG/M
3300007561|Ga0102914_1200408All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage613Open in IMG/M
3300008012|Ga0075480_10233765Not Available958Open in IMG/M
3300008262|Ga0114337_1328540Not Available531Open in IMG/M
3300008266|Ga0114363_1048364All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2045Open in IMG/M
3300008267|Ga0114364_1057146Not Available1369Open in IMG/M
3300008267|Ga0114364_1096536All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage930Open in IMG/M
3300008267|Ga0114364_1125686Not Available753Open in IMG/M
3300008267|Ga0114364_1154003Not Available982Open in IMG/M
3300008450|Ga0114880_1047566All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1829Open in IMG/M
3300009026|Ga0102829_1053567Not Available1213Open in IMG/M
3300009051|Ga0102864_1054828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1079Open in IMG/M
3300009161|Ga0114966_10184286All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1334Open in IMG/M
3300009423|Ga0115548_1143043All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage757Open in IMG/M
3300009435|Ga0115546_1215944Not Available661Open in IMG/M
3300009438|Ga0115559_1095335Not Available1170Open in IMG/M
3300010151|Ga0098061_1260545All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300010153|Ga0098059_1072317All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1378Open in IMG/M
3300010153|Ga0098059_1204091All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage769Open in IMG/M
3300010354|Ga0129333_11390557All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage577Open in IMG/M
3300010368|Ga0129324_10042588Not Available2107Open in IMG/M
3300012013|Ga0153805_1038833Not Available809Open in IMG/M
3300012352|Ga0157138_1052914Not Available638Open in IMG/M
3300012936|Ga0163109_10610382Not Available799Open in IMG/M
3300017706|Ga0181377_1058610Not Available720Open in IMG/M
3300017706|Ga0181377_1060457All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage704Open in IMG/M
3300017713|Ga0181391_1011190All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage2310Open in IMG/M
3300017714|Ga0181412_1150887All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium523Open in IMG/M
3300017717|Ga0181404_1028978Not Available1420Open in IMG/M
3300017720|Ga0181383_1065917Not Available972Open in IMG/M
3300017723|Ga0181362_1030146All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1155Open in IMG/M
3300017724|Ga0181388_1038411Not Available1169Open in IMG/M
3300017727|Ga0181401_1025375All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1736Open in IMG/M
3300017727|Ga0181401_1153129Not Available561Open in IMG/M
3300017727|Ga0181401_1176443Not Available511Open in IMG/M
3300017728|Ga0181419_1114533Not Available658Open in IMG/M
3300017737|Ga0187218_1169665Not Available512Open in IMG/M
3300017738|Ga0181428_1012142All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1975Open in IMG/M
3300017739|Ga0181433_1080865All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium800Open in IMG/M
3300017744|Ga0181397_1183878Not Available526Open in IMG/M
3300017746|Ga0181389_1129100Not Available682Open in IMG/M
3300017747|Ga0181352_1052118Not Available1188Open in IMG/M
3300017748|Ga0181393_1019716All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1979Open in IMG/M
3300017748|Ga0181393_1032858All Organisms → Viruses → Predicted Viral1468Open in IMG/M
3300017758|Ga0181409_1173152All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium628Open in IMG/M
3300017762|Ga0181422_1268118All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage503Open in IMG/M
3300017763|Ga0181410_1111721Not Available785Open in IMG/M
3300017765|Ga0181413_1072483All Organisms → Viruses → Predicted Viral1057Open in IMG/M
3300017765|Ga0181413_1166232Not Available663Open in IMG/M
3300017766|Ga0181343_1128088All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage712Open in IMG/M
3300017766|Ga0181343_1229845All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage504Open in IMG/M
3300017776|Ga0181394_1040960All Organisms → Viruses → Predicted Viral1589Open in IMG/M
3300017818|Ga0181565_10617979Not Available693Open in IMG/M
3300017951|Ga0181577_10629720Not Available659Open in IMG/M
3300017952|Ga0181583_10550471Not Available700Open in IMG/M
3300018682|Ga0188851_1030122Not Available601Open in IMG/M
3300019784|Ga0181359_1110570All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage996Open in IMG/M
3300020220|Ga0194119_10012280All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage10884Open in IMG/M
3300020403|Ga0211532_10140416Not Available998Open in IMG/M
3300020416|Ga0211644_10403764Not Available565Open in IMG/M
3300020551|Ga0208360_1011668All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1238Open in IMG/M
3300021091|Ga0194133_10570867All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage559Open in IMG/M
3300021961|Ga0222714_10312423Not Available857Open in IMG/M
3300022065|Ga0212024_1101652Not Available512Open in IMG/M
3300022176|Ga0212031_1077876All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage565Open in IMG/M
3300022179|Ga0181353_1122355All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage621Open in IMG/M
3300022752|Ga0214917_10426925All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage536Open in IMG/M
3300023081|Ga0255764_10489130Not Available511Open in IMG/M
(restricted) 3300023112|Ga0233411_10038850Not Available1465Open in IMG/M
(restricted) 3300024518|Ga0255048_10144503All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1168Open in IMG/M
3300025082|Ga0208156_1080070All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300025086|Ga0208157_1056708All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1035Open in IMG/M
3300025114|Ga0208433_1133456All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300025118|Ga0208790_1071304All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1054Open in IMG/M
3300025131|Ga0209128_1084126Not Available1060Open in IMG/M
3300025141|Ga0209756_1272238All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium611Open in IMG/M
3300025168|Ga0209337_1330583Not Available533Open in IMG/M
3300025610|Ga0208149_1093107All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300025610|Ga0208149_1093596All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage728Open in IMG/M
3300025626|Ga0209716_1092267All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage877Open in IMG/M
3300025645|Ga0208643_1071083Not Available1012Open in IMG/M
3300025652|Ga0208134_1048255All Organisms → Viruses → Predicted Viral1368Open in IMG/M
3300025653|Ga0208428_1041466All Organisms → Viruses → Predicted Viral1427Open in IMG/M
3300025655|Ga0208795_1140111All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage613Open in IMG/M
3300025687|Ga0208019_1158937Not Available630Open in IMG/M
3300025769|Ga0208767_1086117All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1304Open in IMG/M
3300025810|Ga0208543_1072082Not Available836Open in IMG/M
3300025818|Ga0208542_1098404Not Available845Open in IMG/M
3300025828|Ga0208547_1081544All Organisms → Viruses → Predicted Viral1032Open in IMG/M
3300025848|Ga0208005_1197168Not Available625Open in IMG/M
3300025870|Ga0209666_1392106Not Available519Open in IMG/M
3300025889|Ga0208644_1170282All Organisms → cellular organisms → Bacteria977Open in IMG/M
3300027077|Ga0208941_1041556All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage601Open in IMG/M
3300027522|Ga0209384_1004301Not Available5976Open in IMG/M
3300027659|Ga0208975_1055788Not Available1204Open in IMG/M
3300027693|Ga0209704_1267430Not Available500Open in IMG/M
(restricted) 3300027730|Ga0247833_1117021All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1138Open in IMG/M
3300027798|Ga0209353_10100772All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1304Open in IMG/M
3300027899|Ga0209668_10136777All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1471Open in IMG/M
3300027899|Ga0209668_10598694All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage736Open in IMG/M
3300027899|Ga0209668_10631128All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage717Open in IMG/M
3300028125|Ga0256368_1086824All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage529Open in IMG/M
3300031605|Ga0302132_10079007Not Available1679Open in IMG/M
3300031758|Ga0315907_10705510Not Available767Open in IMG/M
3300031787|Ga0315900_10058087All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage4023Open in IMG/M
3300031963|Ga0315901_10579583All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage856Open in IMG/M
3300031963|Ga0315901_10743037Not Available720Open in IMG/M
3300031963|Ga0315901_10950028All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage606Open in IMG/M
3300031963|Ga0315901_11107928All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage544Open in IMG/M
3300032050|Ga0315906_10464064All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1082Open in IMG/M
3300032093|Ga0315902_10075195All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage3759Open in IMG/M
3300032093|Ga0315902_10509295Not Available1044Open in IMG/M
3300032093|Ga0315902_10564480All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage968Open in IMG/M
3300032116|Ga0315903_10569417All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage877Open in IMG/M
3300034020|Ga0335002_0690793All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage515Open in IMG/M
3300034022|Ga0335005_0583895Not Available608Open in IMG/M
3300034061|Ga0334987_0400776All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage869Open in IMG/M
3300034061|Ga0334987_0730348Not Available562Open in IMG/M
3300034096|Ga0335025_0582899Not Available553Open in IMG/M
3300034105|Ga0335035_0117735All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage1698Open in IMG/M
3300034106|Ga0335036_0755726Not Available568Open in IMG/M
3300034356|Ga0335048_0583014All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage521Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous18.67%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine14.67%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater14.67%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake7.33%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater7.33%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater6.67%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton4.00%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh2.67%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine2.67%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment2.00%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake2.00%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine2.00%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine2.00%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine2.00%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic1.33%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.33%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.33%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater0.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater0.67%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake0.67%
Marine PlanktonEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton0.67%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.67%
Surface IceEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Surface Ice0.67%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater0.67%
Sea-Ice BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sea-Ice Brine0.67%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water0.67%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.67%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001839Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM40, ROCA_DNA238_2.0um_Ob_C_3bEnvironmentalOpen in IMG/M
3300001938Marine microbial communities from Bedford Basin, Nova Scotia, Canada - GS005EnvironmentalOpen in IMG/M
3300002408Freshwater microbial communities from Lake Mendota, WI, sample - 15JUL2010 deep hole epilimnion (Lake Mendota Combined assembly, ASSEMBLY_DATE=20140123)EnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300004097Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - OSD3 (Helgoland) metaGEnvironmentalOpen in IMG/M
3300005527Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel5S_2200h metaGEnvironmentalOpen in IMG/M
3300005528Freshwater lake microbial communities from Lake Erie, under a cyanobacterial bloom - NOAA_Erie_Diel1S_2200h metaGEnvironmentalOpen in IMG/M
3300005582Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRFEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006029Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_20_<0.8_DNAEnvironmentalOpen in IMG/M
3300006738Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaGEnvironmentalOpen in IMG/M
3300006750Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaGEnvironmentalOpen in IMG/M
3300006752Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaGEnvironmentalOpen in IMG/M
3300006753Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaGEnvironmentalOpen in IMG/M
3300006790Marine viral communities from the Gulf of Mexico - 32_GoM_OMZ_CsCl metaGEnvironmentalOpen in IMG/M
3300006793Marine viral communities from the Subarctic Pacific Ocean - 17_ETSP_OMZ_AT15314 metaGEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006805Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNAEnvironmentalOpen in IMG/M
3300006924Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaGEnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007229Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_30_<0.8_DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007344Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4EnvironmentalOpen in IMG/M
3300007346Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31EnvironmentalOpen in IMG/M
3300007542Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1504_1 Viral MetaGEnvironmentalOpen in IMG/M
3300007561Estuarine microbial communities from the Columbia River estuary - metaG 1561A-3EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300008262Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-C-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300008267Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, sample HABS-E2014-0024-100-LTREnvironmentalOpen in IMG/M
3300008450Freshwater viral communities during cyanobacterial harmful algal blooms (CHABs) in Western Lake Erie, USA - Oct 27, 2014 all contigsEnvironmentalOpen in IMG/M
3300009026Estuarine microbial communities from the Columbia River estuary - Freshwater metaG S.575EnvironmentalOpen in IMG/M
3300009051Estuarine microbial communities from the Columbia River estuary - metaG 1449B-02EnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009423Pelagic marine microbial communities from North Sea - COGITO_mtgs_100423EnvironmentalOpen in IMG/M
3300009435Pelagic marine microbial communities from North Sea - COGITO_mtgs_100413EnvironmentalOpen in IMG/M
3300009438Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506EnvironmentalOpen in IMG/M
3300010151Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010354Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_0.6_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012013Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 67 - Surface IceEnvironmentalOpen in IMG/M
3300012352Freshwater microbial communities from Baxter Creek, Ontario, Canada - S37EnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300017706Marine viral communities from the Subarctic Pacific Ocean - Lowphox_13 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017714Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 35 SPOT_SRF_2012-08-15EnvironmentalOpen in IMG/M
3300017717Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 27 SPOT_SRF_2011-10-25EnvironmentalOpen in IMG/M
3300017720Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 6 SPOT_SRF_2009-12-23EnvironmentalOpen in IMG/M
3300017723Freshwater viral communities from Lake Michigan, USA - Su13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017724Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 11 SPOT_SRF_2010-05-17EnvironmentalOpen in IMG/M
3300017727Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 24 SPOT_SRF_2011-07-20EnvironmentalOpen in IMG/M
3300017728Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 42 SPOT_SRF_2013-04-24EnvironmentalOpen in IMG/M
3300017737Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)EnvironmentalOpen in IMG/M
3300017738Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 51 SPOT_SRF_2014-02-12EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017746Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 12 SPOT_SRF_2010-06-29EnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017748Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 16 SPOT_SRF_2010-10-21EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017762Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 45 SPOT_SRF_2013-07-18EnvironmentalOpen in IMG/M
3300017763Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017766Freshwater viral communities from Lake Michigan, USA - Su13.VD.MLB.S.DEnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017952Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018682Metatranscriptome of marine microbial communities from Baltic Sea - GS680_0p1EnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020220Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015018 Mahale Deep Cast 100mEnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020416Marine microbial communities from Tara Oceans - TARA_B100001109 (ERX556137-ERR599039)EnvironmentalOpen in IMG/M
3300020551Freshwater microbial communities from Lake Mendota, WI - 27JUL2010 deep hole epilimnion ns (SPAdes)EnvironmentalOpen in IMG/M
3300021091Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015055 Kigoma Offshore 40mEnvironmentalOpen in IMG/M
3300021961Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3DEnvironmentalOpen in IMG/M
3300022065Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24 (v2)EnvironmentalOpen in IMG/M
3300022176Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1S Viral MetaG (v2)EnvironmentalOpen in IMG/M
3300022179Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.D.NEnvironmentalOpen in IMG/M
3300022752Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL_1208_BBEnvironmentalOpen in IMG/M
3300023081Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaGEnvironmentalOpen in IMG/M
3300023112 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Na_anoxic_2_MGEnvironmentalOpen in IMG/M
3300024518 (restricted)Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2EnvironmentalOpen in IMG/M
3300025082Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025086Marine viral communities from the Subarctic Pacific Ocean - 5_ETSP_OMZ_AT15132 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025114Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025118Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025131Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)EnvironmentalOpen in IMG/M
3300025141Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025610Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025626Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)EnvironmentalOpen in IMG/M
3300025645Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_12 (SPAdes)EnvironmentalOpen in IMG/M
3300025652Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31 (SPAdes)EnvironmentalOpen in IMG/M
3300025653Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025655Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_2 Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025687Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300025769Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21 (SPAdes)EnvironmentalOpen in IMG/M
3300025810Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025848Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025870Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S3LV_125m_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025889Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18 (SPAdes)EnvironmentalOpen in IMG/M
3300027077Ammonia-oxidizing marine microbial communities from Monterey Bay, California, USA - C0912_C27A4_35 (SPAdes)EnvironmentalOpen in IMG/M
3300027522Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG058-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027659Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027693Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027730 (restricted)Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_8mEnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027899Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - PLP11 PL (SPAdes)EnvironmentalOpen in IMG/M
3300028125Sea-ice brine viral communities from Beaufort Sea near Barrow, Alaska, United States - SBEnvironmentalOpen in IMG/M
3300031605Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031963Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA116EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300032093Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA117EnvironmentalOpen in IMG/M
3300032116Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA119EnvironmentalOpen in IMG/M
3300034020Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2015-rr0055EnvironmentalOpen in IMG/M
3300034022Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME20Apr2018-rr0058EnvironmentalOpen in IMG/M
3300034061Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME02Sep2004-rr0028EnvironmentalOpen in IMG/M
3300034096Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15Oct2015-rr0098EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034106Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131EnvironmentalOpen in IMG/M
3300034356Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME17Jun2014-rr0152EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
RCM40_108242613300001839Marine PlanktonYGIGLEYPQCMDQIAEEMGVTNERARQLVRGAELDLAKLPGIKLLEQYL*
GOS2221_100204263300001938MarineAYPQCMEQIAEVLSVTGERARQLVRQAEKDITKVPGIKMLEQYL*
B570J29032_10923870913300002408FreshwaterRRFYGIGQEYPQCMDQIAEEMGVTGERARQLVRQAETELAKLPGIELLEQYL*
JGI25132J35274_107656613300002483MarineIEYPRCMEQIADELQVTGERARQLVRQAEKEIRKIPGIKKLQQYL*
JGI25908J49247_1005443713300003277Freshwater LakeCMDQIAEELDVTGERARQLVRQAENALKALPGIKLLEQYK*
Ga0055584_10127995013300004097Pelagic MarineEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0068876_1074677213300005527Freshwater LakeQCMEQIAEELNVTGERARQLVRQAEVALSKMPGIKLLEQYR*
Ga0068872_1022703913300005528Freshwater LakeQCMEQIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL*
Ga0049080_1004134813300005582Freshwater LenticMDQIAEELDVTGERARQLVRQAENALKAMPGIKLLEQYK*
Ga0075478_1003939113300006026AqueousYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0075478_1008507533300006026AqueousYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL*
Ga0075466_108978843300006029AqueousIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL*
Ga0098035_123131813300006738MarineYPKPMEQIAIELSVTGERARQLVRQAELGLKKMSGIKLLEQYL*
Ga0098058_113622133300006750MarineYGIGYDYPKPMEQIAIELSVTGERARQLVRQAELGLKQMSGIKLLEQYL*
Ga0098048_114104813300006752MarineFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKIPGIKKLQQYL*
Ga0098039_103819513300006753MarineKAAVEMFYGIGYDYPKPMEQIAIELSVTGERARQLVRQAELGLKKMSGIKLLEQYL*
Ga0098074_110102913300006790MarineKPAAALKMFYGIDTEYPRCMEQIAEELQVTGERARQLVRQAEREIKNVPGIKLLEQYL*
Ga0098055_137668333300006793MarineGYDYPKPMEQRAQVLSVTGERARQLVRQAELGLKKMSGIKLLEQYL*
Ga0070749_1001856793300006802AqueousFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0070749_1023465633300006802AqueousFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL*
Ga0075464_1067288213300006805AqueousMEYAQCMEQIAEELEVTGERARQLVRQAEIELAKLPGIELLEQYL*
Ga0098051_119062813300006924MarineIGCEYAACMERIAEELNVTGERARQLVRQAEKSLRGMDDINLLKQYS*
Ga0098041_128752523300006928MarineYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDIDLLKQYS*
Ga0075468_1012019333300007229AqueousGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0075460_1019696413300007234AqueousFYGIGMEYPQVMEQIADEMYITGERARQLVRQGEKDLRKLSGIKLLEKYL*
Ga0070745_117226013300007344AqueousTRFYGIGLEYPQCMEQIAEELQVTGERARQLVRAGEKALQSMDGVKVLEKYF*
Ga0070753_110710413300007346AqueousPEKQGQAVTGFYGIGLEYPQCMEQIAEELQVTGERARQLVRAGEKALQSMDGVKVLEKYF
Ga0099846_109766313300007542AqueousMDQIAEEMGVTGERARQLVRQAEIELAKLPGIKLLEQYL*
Ga0099846_110484053300007542AqueousPQSMDQIAEEMNITGERARQLVRQAEKSLAALPGIEQLKSYL*
Ga0102914_120040813300007561EstuarineMFYGIDSEYAMCMDQIAEELGITGERARQLVRGAELALTKLPGIELLEQYL*
Ga0075480_1023376513300008012AqueousCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0114337_132854013300008262Freshwater, PlanktonGLEYPQCMEQIAEEMDVTGERARQLVRSGEKALASLPGIQMLAQYL*
Ga0114363_104836473300008266Freshwater, PlanktonTRFYGIDREYAQCMEQIAEELNVTGERARQLVRAAEKNIATLPGIELLEQYL*
Ga0114364_105714653300008267Freshwater, PlanktonRFYGIGREYAQCMDQIAEEMGVTGERARQLVRQAETEMAKLPGIQLLEQYL*
Ga0114364_109653633300008267Freshwater, PlanktonAISRFYGIGREYPQCMDQIAEEMGVTNERARQLVRGAELALASLPGIELLEQYL*
Ga0114364_112568633300008267Freshwater, PlanktonRFYGIGREYAQCMDQIAEEMGVTGERARQLVRQAETEMSKIPGIQLLEQYL*
Ga0114364_115400313300008267Freshwater, PlanktonGFEYEQCMEQIAEELNVTGERARQLVRQAEVALSKMPGIKLLEQYR*
Ga0114880_104756643300008450Freshwater LakeEAVTRFYGIDREYAQCMEQIAEELNVTGERARQLVRLAESALRAMPGIQLLEQYL*
Ga0102829_105356713300009026EstuarineREAITRFYGIGFEYEQCMDQIAEELNVTGERARQLVRQAELALKALPGIKLLEQYK*
Ga0102864_105482813300009051EstuarineIGEEMGITNERARQLVRQAEIDLAKVPGIKLLEQYL*
Ga0114966_1018428613300009161Freshwater LakeIKMFYGIDSEYAMCMDQIAEELGVTGERARQLVRGAELALTKLPGIELLEQYL*
Ga0115548_114304313300009423Pelagic MarineTMFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0115546_121594433300009435Pelagic MarineMEQIAEELNVTGERARQLVRAAEKNIATLPGIELLEQYL*
Ga0115559_109533513300009438Pelagic MarinePRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0098061_126054533300010151MarineAAIEMFYGIGYDYPKPMEQIAIELSVTGERARQLVRQAELGLKKMSGIKLLEQYL*
Ga0098059_107231713300010153MarineKQKLAVTMFYGIGYEYPKPMEQIAVELEVTGERARQLVRQGECALRKLSGIGILEKYL*
Ga0098059_120409113300010153MarineMFYGIGCEYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDIDLLKQYS*
Ga0129333_1139055723300010354Freshwater To Marine Saline GradientFYGIGREYPQCMDQIAEEMGVTGERARQLVRGAELALAKLPGIELLEQYL*
Ga0129324_1004258813300010368Freshwater To Marine Saline GradientQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL*
Ga0153805_103883333300012013Surface IceTRFYGIDREYAQCMEQIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL*
Ga0157138_105291423300012352FreshwaterMEQIGEEMGITNERARQLVRQGEKALAEVPGIKLLEQYL*
Ga0163109_1061038213300012936Surface SeawaterEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS*
Ga0181377_105861033300017706MarineEACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181377_106045713300017706MarineMEQIAEVLSVTGERARQLVRQAEIEITKVPGIKMLEQYL
Ga0181391_101119013300017713SeawaterQSAALTMFYGIGLEFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0181412_115088713300017714SeawaterLKPKQASALTMFYGIGIDFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQY
Ga0181404_102897813300017717SeawaterGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181383_106591713300017720SeawaterRIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181362_103014613300017723Freshwater LakeIGEEMGITNERARQLVRQAEIDLAKVPGIKLLEQYL
Ga0181388_103841153300017724SeawaterMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181401_102537513300017727SeawaterGIGCEYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDIDLLKQYS
Ga0181401_115312923300017727SeawaterGIGCEYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181401_117644313300017727SeawaterACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181419_111453333300017728SeawaterCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0187218_116966513300017737SeawaterITMFYGIGCEYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181428_101214243300017738SeawaterMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0181433_108086513300017739SeawaterKQASALTMFYGIGIDFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0181397_118387823300017744SeawaterEYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181389_112910013300017746SeawaterIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181352_105211813300017747Freshwater LakeQCMDQIAEEMGVTGERARQLVRQAETEMSKIPGIQLLEQYL
Ga0181393_101971613300017748SeawaterEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0181393_103285813300017748SeawaterKKAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181409_117315223300017758SeawaterGLEFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0181422_126811813300017762SeawaterFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181410_111172133300017763SeawaterGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Ga0181413_107248343300017765SeawaterIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181413_116623223300017765SeawaterYEACMERIAEELNVTGERARQLVRQAEKSLKAMEDINLLKQYS
Ga0181343_112808813300017766Freshwater LakeAEELGVTGERARQLVRLAENGLRAMPGIKLLEQYL
Ga0181343_122984513300017766Freshwater LakeGIDREYAQCMEQIAEELNVTGERARQLVRLGETALRNMPGIRLLEQYL
Ga0181394_104096013300017776SeawaterKGIGIEYPRCMEQIADELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0181565_1061797913300017818Salt MarshYGIDTEYPRCMEQIAEELQVTGERARQLVRQAEREIKNVTGITLLEQYL
Ga0181577_1062972013300017951Salt MarshYPQCMEQIAEELQVTGERARQLVRAGEKALQSLEGVKVLEKYF
Ga0181583_1055047133300017952Salt MarshFYGIDTEYPRCMEQIAEELQVTGERARQLVRQAEREIKNVPGIKLLEQYL
Ga0188851_103012223300018682Freshwater LakeLVRFYGIDREYAQCMDQIAEELNVTGERARQLVRAAEKTIKTLPGIELLEQYL
Ga0181359_111057013300019784Freshwater LakeMEQIAEELGVTGERARQLVRLAEKGLQAMPGIKLLEQYL
Ga0194119_1001228013300020220Freshwater LakeIAEELNVTGERARQLVRAAEKNIATLPGIELLEQYL
Ga0211532_1014041643300020403MarineEACMERIAEELNVTGERARQLVRQAEKSLRGMEDINLLKQYS
Ga0211644_1040376413300020416MarineYGIGCEYEACMERIAEELNVTGERARQLVRQAEKSLRGMEDINLLKQYS
Ga0208360_101166853300020551FreshwaterIRRFYGIGQEYPQCMDQIAEEMGVTGERARQLVRQAETELAKLPGIELLEQYL
Ga0194133_1057086713300021091Freshwater LakeMNYGIGYEYAKPMEQIAEELGVTGERARQLVRLAEKGLQAMPGITLLEQYL
Ga0222714_1031242313300021961Estuarine WaterIEREYAQCMEQIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL
Ga0212024_110165223300022065AqueousIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0212031_107787613300022176AqueousYPQCMEQIAEELDITGERARQLVRAGEKTLRSLKGAKILAQYF
Ga0181353_112235513300022179Freshwater LakeYGIDAEYAKCMDQIAEELNVTGERARQLVRGAELALAKLPGIKLLEQYL
Ga0214917_1042692523300022752FreshwaterQRVALCMNYGIGFEYAKPMEQIAEELGVTGERARQLVRLAEKGLQAMPGIKLLEQYL
Ga0255764_1048913013300023081Salt MarshMVMDQVAEELGVTGERARQLVRQAELALKKVSGIDLLKEYL
(restricted) Ga0233411_1003885013300023112SeawaterIGIEYPRCMEQIAEELQVTGERARQLVRQAEVEIRKVPGIKLLEQYL
(restricted) Ga0255048_1014450313300024518SeawaterLFYGIGIEYPQCMEQIAEVLSVTGERARQLVRQAEIEITKVPGIKMLEQYL
Ga0208156_108007023300025082MarineQKAAIEMFYGIGYEYPKPMEQIAIELSVTGERARQLVRQAELGLKKMSGIKLLEQYL
Ga0208157_105670813300025086MarineITMFYGIGIDFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0208433_113345613300025114MarineAIELSVTGERARQLVRQAELGLKKMSGIKLLEQYL
Ga0208790_107130413300025118MarineAVELDVSAERARQLVRQAECALRKLSGIELLEQYL
Ga0209128_108412643300025131MarineKIAITMFYGIGCEYAACMERIAEELNVTGERARQLVRQAEKSLRGMDDINLLKQYS
Ga0209756_127223813300025141MarineIDFPRCMEQIAEELKVTGERARQLVRQAEKDIIKVPGIKNLLQYL
Ga0209337_133058323300025168MarineAEELNVTGERARQLVRQAEKNLKAMEDINLLKQYS
Ga0208149_109310713300025610AqueousMFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Ga0208149_109359623300025610AqueousMFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0209716_109226733300025626Pelagic MarineTMFYGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0208643_107108343300025645AqueousAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0208134_104825553300025652AqueousPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Ga0208428_104146653300025653AqueousEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0208795_114011133300025655AqueousEQIAEELDITGERARQLVRAGEKTLRSLNGAKILAQYF
Ga0208019_115893733300025687AqueousEKQREAITRFYGIDREYAQCMEQIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL
Ga0208767_108611743300025769AqueousMEHIAEELNVTGERARQLVRQGEKALKGVEGIDKLMQYL
Ga0208543_107208233300025810AqueousGIGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0208542_109840433300025818AqueousRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGVKLLEQYL
Ga0208547_108154433300025828AqueousGIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Ga0208005_119716813300025848AqueousYGIDQEYSQCMDQIAEEMGVTGERARQLVRQAETELAKLPGIQLLEQYL
Ga0209666_139210623300025870MarinePKQAKALTLFYGIGIEYPQCMEQIAEVLSVTGERARQLVRQAEIEITKVPGIKMLEQYL
Ga0208644_117028233300025889AqueousIEYPRCMEQIAEELQVTGERARQLVRQAEKEIRKVPGIKLLEQYL
Ga0208941_104155633300027077MarineEHIAEELNVTGERARQLVRQAEKALKAVPGIEKLLKYV
Ga0209384_1004301153300027522MarineQIAEELKVTGERARQLVRQAEVEIRKVPGIKLLEQYL
Ga0208975_105578813300027659Freshwater LenticKQREAITRFYGIDREYAQCMEQIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL
Ga0209704_126743023300027693Freshwater SedimentAQCMEQIAEELNVTGERARQLVRAAETSIKKVPGIELLEQYL
(restricted) Ga0247833_111702133300027730FreshwaterEQIAEELGVTGERARQLVRLAEKGLQAMPGIKLLEQYL
Ga0209353_1010077263300027798Freshwater LakeIAEELAVTGERARQLVRQAENALKALPGIKLLEQYK
Ga0209668_1013677713300027899Freshwater Lake SedimentEYAKCMDQIAEELNVTGERARQLVRGAELALAKLPGIKLLEQYL
Ga0209668_1059869413300027899Freshwater Lake SedimentYGIDREYAQCMEQIAEELNVTGERARQLVRLAESALKAMPGIKLLEQYL
Ga0209668_1063112813300027899Freshwater Lake SedimentMDQIAEELNVTGERARQLVRGAELALAKLPGIKLLEQYL
Ga0256368_108682413300028125Sea-Ice BrineMFYGIGIEYPRCMEQIAEELKVTGERARQLVRQAEVEIRKVPGIKLLEQYL
Ga0302132_1007900773300031605MarineIAEELKVTGERARQLVRQAEVEIRKVPGIKLLEQYL
Ga0315907_1070551013300031758FreshwaterPQCMDQIAEEMGVTNERARQLVRGAELDLAKLPGIKLLEQYL
Ga0315900_1005808713300031787FreshwaterGIDREYAQCMEQIAEEMSVTGERARQLVRAGEKSLAALPGIQTLAQYL
Ga0315901_1057958333300031963FreshwaterAEELGVTGERARQLVRLAEKGLQAMPGIKLLEQYL
Ga0315901_1074303733300031963FreshwaterQIAEELDVTGERARQLVRAAEKTLSTMKGIELLEQYL
Ga0315901_1095002823300031963FreshwaterNQLPAKQCAAIKMFYGIDAEYAKCMDQIAEELNVTGERARQLVRGAELALAKLPGIKLLEQYL
Ga0315901_1110792823300031963FreshwaterIKMFYGIDSEYPKCMEQIAEELQVTGERARQLVRQAEVALSKLPGIKLLEQYL
Ga0315906_1046406413300032050FreshwaterPMEQIAEELNITGERARQLVRLGEQSLRSLPGIKLLEQYL
Ga0315902_1007519573300032093FreshwaterKEREAVIRFYGLGLEYPQCMEQIAEEMDVTGERARQLVRSGEKALASLPGIQMLAQYL
Ga0315902_1050929533300032093FreshwaterYEQCMEQIAEELNVTGERARQLVRQAEVALSKMPGIKLLEQYR
Ga0315902_1056448013300032093FreshwaterCMEQIAEELNVTGERARQLVRLAESALRAMPGIKLLEQYL
Ga0315903_1056941713300032116FreshwaterGIGYEYAKPMEQIAEELGVTGERARQLVRLAEKGLQAMPGIKLLEQYL
Ga0335002_0690793_359_4783300034020FreshwaterMDQIAEEMGVTNERARQLVRGAELALASLPGIELLEQYL
Ga0335005_0583895_473_5923300034022FreshwaterMEQIGEEMGITNERARQLVRQAEIDLAKVPGIKLLEQYL
Ga0334987_0400776_712_8673300034061FreshwaterMNYGIGYEYAKPMEQIAEELNITGERARQLVRLGEQSLRSLPGIKLLEQYL
Ga0334987_0730348_439_5583300034061FreshwaterMDQIAEEMNVTNERARQLVRQAETALASLPGIELLAQYL
Ga0335025_0582899_42_1613300034096FreshwaterMDQIAEEMGVTNERARQLVRGAETALTTVPGIELLEQYL
Ga0335035_0117735_2_1123300034105FreshwaterIAEELDVTGERARQLVRQAELDLAKVPGIKLLAQYL
Ga0335036_0755726_1_1113300034106FreshwaterIAEELDVTGERARQLVRAAEKTLSTMQGIELLEQYL
Ga0335048_0583014_344_4633300034356FreshwaterMEQIAEELDVTGERARQLVRQAELDLAKVPGIKLLAQYL


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