NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F046581

Metagenome / Metatranscriptome Family F046581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F046581
Family Type Metagenome / Metatranscriptome
Number of Sequences 151
Average Sequence Length 45 residues
Representative Sequence KFRDCARNAAQPLSDRSVDAALAAIGRLETLPDARELMTPFTG
Number of Associated Samples 123
Number of Associated Scaffolds 151

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.31 %
% of genes near scaffold ends (potentially truncated) 96.03 %
% of genes from short scaffolds (< 2000 bps) 93.38 %
Associated GOLD sequencing projects 117
AlphaFold2 3D model prediction Yes
3D model pTM-score0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (61.589 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.437 % of family members)
Environment Ontology (ENVO) Unclassified
(38.411 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.682 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.07%    β-sheet: 0.00%    Coil/Unstructured: 54.93%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 151 Family Scaffolds
PF01266DAO 7.28
PF01425Amidase 5.96
PF00561Abhydrolase_1 5.30
PF07883Cupin_2 3.97
PF12697Abhydrolase_6 3.97
PF14023DUF4239 2.65
PF04909Amidohydro_2 1.99
PF03330DPBB_1 1.99
PF00083Sugar_tr 1.32
PF12681Glyoxalase_2 1.32
PF00903Glyoxalase 1.32
PF01724DUF29 1.32
PF13561adh_short_C2 1.32
PF16864Dimerisation2 0.66
PF00857Isochorismatase 0.66
PF01568Molydop_binding 0.66
PF08241Methyltransf_11 0.66
PF01192RNA_pol_Rpb6 0.66
PF13649Methyltransf_25 0.66
PF13450NAD_binding_8 0.66
PF10282Lactonase 0.66
PF13469Sulfotransfer_3 0.66
PF13607Succ_CoA_lig 0.66
PF00296Bac_luciferase 0.66
PF08883DOPA_dioxygen 0.66
PF03328HpcH_HpaI 0.66
PF03118RNA_pol_A_CTD 0.66
PF02668TauD 0.66
PF08388GIIM 0.66
PF13302Acetyltransf_3 0.66
PF00732GMC_oxred_N 0.66
PF03449GreA_GreB_N 0.66
PF01555N6_N4_Mtase 0.66
PF12831FAD_oxidored 0.66
PF08238Sel1 0.66
PF00106adh_short 0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 151 Family Scaffolds
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 5.96
COG0202DNA-directed RNA polymerase, alpha subunit/40 kD subunitTranscription [K] 0.66
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 0.66
COG0782Transcription elongation factor, GreA/GreB familyTranscription [K] 0.66
COG0863DNA modification methylaseReplication, recombination and repair [L] 0.66
COG1041tRNA G10 N-methylase Trm11Translation, ribosomal structure and biogenesis [J] 0.66
COG1335Nicotinamidase-related amidaseCoenzyme transport and metabolism [H] 0.66
COG1535Isochorismate hydrolaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.66
COG1758DNA-directed RNA polymerase, subunit K/omegaTranscription [K] 0.66
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.66
COG2175Taurine dioxygenase, alpha-ketoglutarate-dependentSecondary metabolites biosynthesis, transport and catabolism [Q] 0.66
COG2189Adenine specific DNA methylase ModReplication, recombination and repair [L] 0.66
COG2301Citrate lyase beta subunitCarbohydrate transport and metabolism [G] 0.66
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.66
COG3805Aromatic ring-cleaving dioxygenaseSecondary metabolites biosynthesis, transport and catabolism [Q] 0.66
COG38362-keto-3-deoxy-L-rhamnonate aldolase RhmACarbohydrate transport and metabolism [G] 0.66


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms62.25 %
UnclassifiedrootN/A37.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004080|Ga0062385_10652600Not Available672Open in IMG/M
3300004091|Ga0062387_100604304Not Available787Open in IMG/M
3300004092|Ga0062389_101717105Not Available809Open in IMG/M
3300005177|Ga0066690_10724082Not Available656Open in IMG/M
3300005332|Ga0066388_100971170All Organisms → cellular organisms → Bacteria1418Open in IMG/M
3300005338|Ga0068868_101976722Not Available553Open in IMG/M
3300005355|Ga0070671_100364990All Organisms → cellular organisms → Bacteria → Proteobacteria1233Open in IMG/M
3300005436|Ga0070713_102086015All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300005529|Ga0070741_11418275All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300005541|Ga0070733_11223061All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300005542|Ga0070732_11025763All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium505Open in IMG/M
3300005618|Ga0068864_101805772All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria617Open in IMG/M
3300005764|Ga0066903_101874814All Organisms → cellular organisms → Bacteria → Proteobacteria1148Open in IMG/M
3300005764|Ga0066903_104789673All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales720Open in IMG/M
3300005764|Ga0066903_107722343Not Available553Open in IMG/M
3300006173|Ga0070716_100248834All Organisms → cellular organisms → Bacteria1210Open in IMG/M
3300006175|Ga0070712_100881930Not Available771Open in IMG/M
3300006176|Ga0070765_101593052All Organisms → cellular organisms → Bacteria → Proteobacteria614Open in IMG/M
3300006176|Ga0070765_101690505Not Available594Open in IMG/M
3300006806|Ga0079220_10716108All Organisms → cellular organisms → Bacteria → Proteobacteria739Open in IMG/M
3300006893|Ga0073928_10240725All Organisms → cellular organisms → Bacteria1390Open in IMG/M
3300006954|Ga0079219_10385978All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300009012|Ga0066710_103508561All Organisms → cellular organisms → Bacteria → Proteobacteria593Open in IMG/M
3300009088|Ga0099830_10652501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseicella865Open in IMG/M
3300009525|Ga0116220_10580527Not Available514Open in IMG/M
3300009792|Ga0126374_11217497Not Available604Open in IMG/M
3300010046|Ga0126384_10100021All Organisms → cellular organisms → Bacteria2137Open in IMG/M
3300010048|Ga0126373_11910128All Organisms → cellular organisms → Bacteria657Open in IMG/M
3300010360|Ga0126372_10656714Not Available1016Open in IMG/M
3300010360|Ga0126372_11312915Not Available753Open in IMG/M
3300010361|Ga0126378_11562163Not Available749Open in IMG/M
3300010371|Ga0134125_12568643All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria554Open in IMG/M
3300010373|Ga0134128_12431362Not Available577Open in IMG/M
3300010376|Ga0126381_100358435All Organisms → cellular organisms → Bacteria → Proteobacteria2018Open in IMG/M
3300010376|Ga0126381_102670881Not Available714Open in IMG/M
3300010376|Ga0126381_104502630All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium538Open in IMG/M
3300010379|Ga0136449_100597636Not Available1882Open in IMG/M
3300010398|Ga0126383_10314659All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1570Open in IMG/M
3300010398|Ga0126383_13590776Not Available507Open in IMG/M
3300010403|Ga0134123_11050795All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria834Open in IMG/M
3300011269|Ga0137392_10657458Not Available869Open in IMG/M
3300012582|Ga0137358_10216147All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300012918|Ga0137396_10018179All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales4460Open in IMG/M
3300012922|Ga0137394_10677952Not Available869Open in IMG/M
3300012922|Ga0137394_11201972All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium622Open in IMG/M
3300012922|Ga0137394_11519214All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300012927|Ga0137416_10270515All Organisms → cellular organisms → Bacteria1396Open in IMG/M
3300012971|Ga0126369_13473672Not Available516Open in IMG/M
3300013297|Ga0157378_11936426Not Available639Open in IMG/M
3300013308|Ga0157375_11059141All Organisms → cellular organisms → Eukaryota → Opisthokonta948Open in IMG/M
3300014501|Ga0182024_10487804Not Available1570Open in IMG/M
3300015371|Ga0132258_11345779All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1804Open in IMG/M
3300016270|Ga0182036_10056473All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2494Open in IMG/M
3300016294|Ga0182041_10756158Not Available866Open in IMG/M
3300016319|Ga0182033_11667374All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae577Open in IMG/M
3300016371|Ga0182034_10372526All Organisms → cellular organisms → Bacteria → Proteobacteria1165Open in IMG/M
3300016371|Ga0182034_10760892Not Available827Open in IMG/M
3300016387|Ga0182040_10099037All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1973Open in IMG/M
3300016387|Ga0182040_10933239Not Available721Open in IMG/M
3300016387|Ga0182040_10984287Not Available703Open in IMG/M
3300016445|Ga0182038_10435352All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1107Open in IMG/M
3300016445|Ga0182038_10844894All Organisms → cellular organisms → Bacteria → Proteobacteria804Open in IMG/M
3300016445|Ga0182038_12197554All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium500Open in IMG/M
3300018060|Ga0187765_10148898All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. TSO35-21319Open in IMG/M
3300018060|Ga0187765_10943883All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300018060|Ga0187765_11223361All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300018422|Ga0190265_13557433Not Available519Open in IMG/M
3300018468|Ga0066662_10674506Not Available982Open in IMG/M
3300019888|Ga0193751_1198339Not Available674Open in IMG/M
3300020579|Ga0210407_11202046Not Available570Open in IMG/M
3300020580|Ga0210403_10420344Not Available1090Open in IMG/M
3300020580|Ga0210403_11289516All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium558Open in IMG/M
3300020583|Ga0210401_11527593All Organisms → cellular organisms → Bacteria → Proteobacteria525Open in IMG/M
3300021178|Ga0210408_10271953All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1350Open in IMG/M
3300021361|Ga0213872_10349578All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium607Open in IMG/M
3300021384|Ga0213876_10547320All Organisms → cellular organisms → Bacteria → Proteobacteria616Open in IMG/M
3300021404|Ga0210389_11538543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae505Open in IMG/M
3300021406|Ga0210386_10215806All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1629Open in IMG/M
3300021406|Ga0210386_11501513Not Available562Open in IMG/M
3300021432|Ga0210384_10481405Not Available1117Open in IMG/M
3300021439|Ga0213879_10273253All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium515Open in IMG/M
3300021560|Ga0126371_10780171All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1102Open in IMG/M
3300022522|Ga0242659_1121473Not Available534Open in IMG/M
3300025916|Ga0207663_10153080All Organisms → cellular organisms → Bacteria1620Open in IMG/M
3300025920|Ga0207649_11280347Not Available580Open in IMG/M
3300025928|Ga0207700_11525318All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300025929|Ga0207664_11932564All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium513Open in IMG/M
3300026999|Ga0207949_1003687All Organisms → cellular organisms → Bacteria1355Open in IMG/M
3300027842|Ga0209580_10573254All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium560Open in IMG/M
3300027846|Ga0209180_10675814Not Available564Open in IMG/M
3300027903|Ga0209488_10333026All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300029636|Ga0222749_10423480All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium709Open in IMG/M
3300031231|Ga0170824_106013659Not Available584Open in IMG/M
3300031231|Ga0170824_118777054All Organisms → cellular organisms → Bacteria1182Open in IMG/M
3300031544|Ga0318534_10335431All Organisms → cellular organisms → Bacteria → Proteobacteria871Open in IMG/M
3300031561|Ga0318528_10067028All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1843Open in IMG/M
3300031572|Ga0318515_10041957All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium2275Open in IMG/M
3300031640|Ga0318555_10147605All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1258Open in IMG/M
3300031680|Ga0318574_10446731All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium756Open in IMG/M
3300031681|Ga0318572_10368707Not Available853Open in IMG/M
3300031682|Ga0318560_10698392Not Available548Open in IMG/M
3300031708|Ga0310686_102392956Not Available1162Open in IMG/M
3300031708|Ga0310686_118439128All Organisms → cellular organisms → Bacteria → Proteobacteria804Open in IMG/M
3300031724|Ga0318500_10206804All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium942Open in IMG/M
3300031724|Ga0318500_10233797All Organisms → cellular organisms → Bacteria → Proteobacteria888Open in IMG/M
3300031744|Ga0306918_10959154Not Available665Open in IMG/M
3300031748|Ga0318492_10137958Not Available1223Open in IMG/M
3300031765|Ga0318554_10252348All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1004Open in IMG/M
3300031782|Ga0318552_10208931All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium988Open in IMG/M
3300031792|Ga0318529_10019243Not Available2698Open in IMG/M
3300031792|Ga0318529_10173476All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium997Open in IMG/M
3300031793|Ga0318548_10347101All Organisms → cellular organisms → Bacteria728Open in IMG/M
3300031805|Ga0318497_10098820All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1564Open in IMG/M
3300031805|Ga0318497_10106749All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1507Open in IMG/M
3300031819|Ga0318568_10196159All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1244Open in IMG/M
3300031823|Ga0307478_11290624Not Available607Open in IMG/M
3300031846|Ga0318512_10549001Not Available587Open in IMG/M
3300031879|Ga0306919_10061425All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2528Open in IMG/M
3300031880|Ga0318544_10091621All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1139Open in IMG/M
3300031890|Ga0306925_11264793All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria735Open in IMG/M
3300031893|Ga0318536_10081048Not Available1610Open in IMG/M
3300031897|Ga0318520_10316730All Organisms → cellular organisms → Bacteria → Proteobacteria942Open in IMG/M
3300031912|Ga0306921_10859331Not Available1032Open in IMG/M
3300031941|Ga0310912_10635050Not Available830Open in IMG/M
3300031942|Ga0310916_10483933Not Available1054Open in IMG/M
3300031942|Ga0310916_11406214All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria571Open in IMG/M
3300031942|Ga0310916_11539416Not Available541Open in IMG/M
3300031945|Ga0310913_10209371All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1364Open in IMG/M
3300031946|Ga0310910_10270883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1331Open in IMG/M
3300031947|Ga0310909_10028919All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4085Open in IMG/M
3300031962|Ga0307479_10086873All Organisms → cellular organisms → Bacteria3029Open in IMG/M
3300031962|Ga0307479_11877825Not Available550Open in IMG/M
3300031981|Ga0318531_10152293All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1036Open in IMG/M
3300032001|Ga0306922_10304725All Organisms → cellular organisms → Bacteria → Proteobacteria1711Open in IMG/M
3300032008|Ga0318562_10259579All Organisms → cellular organisms → Bacteria → Proteobacteria1009Open in IMG/M
3300032010|Ga0318569_10065760All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1597Open in IMG/M
3300032025|Ga0318507_10198375Not Available866Open in IMG/M
3300032035|Ga0310911_10361011All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium839Open in IMG/M
3300032035|Ga0310911_10524108Not Available687Open in IMG/M
3300032041|Ga0318549_10130665Not Available1110Open in IMG/M
3300032043|Ga0318556_10197343Not Available1046Open in IMG/M
3300032052|Ga0318506_10503427All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium537Open in IMG/M
3300032066|Ga0318514_10357697All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300032174|Ga0307470_11914877Not Available505Open in IMG/M
3300032180|Ga0307471_103293855All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 69-11572Open in IMG/M
3300032180|Ga0307471_103430538All Organisms → cellular organisms → Bacteria561Open in IMG/M
3300032261|Ga0306920_100042877All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium6549Open in IMG/M
3300032515|Ga0348332_14621801Not Available788Open in IMG/M
3300032770|Ga0335085_10754410All Organisms → cellular organisms → Bacteria1076Open in IMG/M
3300033289|Ga0310914_10441465All Organisms → cellular organisms → Bacteria1178Open in IMG/M
3300033290|Ga0318519_10160725All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1261Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil34.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil11.26%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil8.61%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.62%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil3.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.31%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.65%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil2.65%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.99%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.99%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.99%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.32%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.32%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.32%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.32%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.32%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.66%
Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.66%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.66%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.66%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.66%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.66%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.66%
Plant RootsHost-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots0.66%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.66%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006806Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100EnvironmentalOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009525Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaGEnvironmentalOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010046Tropical forest soil microbial communities from Panama - MetaG Plot_36EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021361Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2Host-AssociatedOpen in IMG/M
3300021384Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9Host-AssociatedOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021439Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022522Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026999Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF044 (SPAdes)EnvironmentalOpen in IMG/M
3300027842Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031680Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031724Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031748Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031792Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032010Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032041Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22EnvironmentalOpen in IMG/M
3300032043Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032515FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062385_1065260013300004080Bog Forest SoilDCARNAVQPLSDASIDAALARIARLEALSDARELMAAFAG*
Ga0062387_10060430413300004091Bog Forest SoilMPLTNAQLEIKFRDCARNAVQLRSGASLDGLLAAIGRLETLADTWKLIIAFAE*
Ga0062389_10171710513300004092Bog Forest SoilMPLTNAQLEIKFRDCARNAVQLRSGASLDGLLAAIGRLETLTDTRKLMIAFAE*
Ga0066690_1072408223300005177SoilKFRDCARNAVRPLSDSRIDAALTAIGRLETLADATELMAPFAG*
Ga0066388_10097117013300005332Tropical Forest SoilKFRDCARNAAQPLSDRSVDAALAAIGRLETLPDARELMTPFTG*
Ga0068868_10197672223300005338Miscanthus RhizosphereDVQFEAKFRDCARNAVRPLSGATVDAALAAIAGLETLPDARELMAPFAG*
Ga0070671_10036499013300005355Switchgrass RhizosphereFEAKFRDCARNAVRPLSDTSIDAALAAIGRLETLADARELMTPFTG*
Ga0070713_10208601523300005436Corn, Switchgrass And Miscanthus RhizosphereLTNAQFEAKFRDCARNAVQPLSDASVDAVMQAIGRLETLPDARELMRSVS*
Ga0070741_1141827523300005529Surface SoilFEAKFRDCAGRAVRPLSAANIDAALTAIGRLEMLADARELIAPFAG*
Ga0070733_1122306113300005541Surface SoilHAQFEAKFRDCACNARQPLSEASLDAVLTAIGRLEMLPDARELMTPFAG*
Ga0070732_1102576313300005542Surface SoilARNAARPLSDTSIDAALAAIGRLERLADVRELTTPFAG*
Ga0068864_10180577213300005618Switchgrass RhizosphereKPLTNTQFEAKFRGCTRNAVRPLSDTSIDAALVAIGRLETLADARELMMPFTG*
Ga0066903_10187481413300005764Tropical Forest SoilAKFRDCARNAVRSLPEASVDAALAVIARLETLQDARELMARFAG*
Ga0066903_10478967313300005764Tropical Forest SoilKFRDCARNALQPLSEASVDGVLAAIEQLETLPDAQELMTPFAG*
Ga0066903_10772234313300005764Tropical Forest SoilEAKFRDCARNAARPLPEERVDAVLSQIGRLELLSDVRELMTPFAG*
Ga0070716_10024883423300006173Corn, Switchgrass And Miscanthus RhizosphereMLNSGRKFRDCARNVVRPVSDANVDAAIAVLETLSDARELLSPFAG*
Ga0070712_10088193043300006175Corn, Switchgrass And Miscanthus RhizosphereKPLTNAQLDAKFRDCARNALRPLSDGSLDGVLAAIRRLETLPDAQELMAAFAG*
Ga0070765_10159305223300006176SoilKPLTDAQFEAKFRDSARNAVRPLSDTSIDAALAAIGRLETLADVRKLMTPFTG*
Ga0070765_10169050513300006176SoilLDCARKAVQPLPKPRADAVLAAIKRLEALPDARVLMTPFDWRYRG*
Ga0079220_1071610813300006806Agricultural SoilLTNAQLETKFRDCGRNAVQPLSGASLDGLLAAIGRLETLSDARELMTAFVG*
Ga0073928_1024072523300006893Iron-Sulfur Acid SpringMRFGLSDASLDELLAAIGRLEALPDARKLITAFAG*
Ga0079219_1038597833300006954Agricultural SoilRDCARNAIQPLSDQSLDALLAVIGRLETLPDARELMTAAAG*
Ga0066710_10350856113300009012Grasslands SoilFEAKFRDCAGNAVQKLPDAGVDAVLAAIARLEALPNARELMTPFAG
Ga0099830_1065250113300009088Vadose Zone SoilNAAQPLSDASLDAALEAIGRLEMLPDVRELMTPFAG*
Ga0116220_1058052723300009525Peatlands SoilDCARNAVRPLSDASVDAVLAAIERLDTLADVRELLAPFAG*
Ga0126374_1121749713300009792Tropical Forest SoilTQFEAKFRDCACNAVHQPLSDTSIDAALAAIGRLEMLADARELMTPFSG*
Ga0126384_1010002113300010046Tropical Forest SoilCARNAVQPLSDGSVDAALAAIGRLETLPDARELMTPFTG*
Ga0126373_1191012823300010048Tropical Forest SoilLEAKFRDCARNAALPLSHGSVDAALAAIGRLETLPDARELMTPFTG*
Ga0126372_1065671423300010360Tropical Forest SoilQLETKFRDCARNAVQPLSDTSLDGLLAAIGRLETLPDARELMTAFGG*
Ga0126372_1131291513300010360Tropical Forest SoilNAVHQPLSDTSIDAALAAIGRLEMLADARELMTPFSG*
Ga0126378_1156216313300010361Tropical Forest SoilKFRDCACNAVHQPLSDTSIDAALAAIGRLEMLADARELMTPFSG*
Ga0134125_1256864323300010371Terrestrial SoilATFRDCARNAVWPLSDTSIDSALAAIGRLETLADARELMTPFAG*
Ga0134128_1243136223300010373Terrestrial SoilAKNAVRPLSDTSIDAALVAIGRLETLADARELMTPFAG*
Ga0126381_10035843513300010376Tropical Forest SoilAKFRDCARNAVRPLSDASVDAVLASIGQLETLADARELLTPVTD*
Ga0126381_10267088113300010376Tropical Forest SoilAKFRDCARNAVRPLSGDNIDNALKLIARLETLTDARELMAAFAG*
Ga0126381_10450263013300010376Tropical Forest SoilAKFRDCARNAVRPLSDASVDAVLASIGQLETLADARELLTPFTD*
Ga0136449_10059763613300010379Peatlands SoilDPQFEAKFRDCARNAVRPLSDASVDAVLAAIERLDTLADVRELLAPFAG*
Ga0126383_1031465933300010398Tropical Forest SoilLETKFRDCARNAVQPLSETSLDELLVVIGRLETLPDARELMTAFGG*
Ga0126383_1359077613300010398Tropical Forest SoilETQFEAKFRDCARNAVRPLRDASVDAVLSAIRRLETLPNARELLTPFAE*
Ga0134123_1105079513300010403Terrestrial SoilRNAVWPLSDTSINAALAAIGRLETLADARELMMPFVG*
Ga0137392_1065745813300011269Vadose Zone SoilMAQLEAKLRDCARNAAQPLSDASLDGLLAAIGRLETLPDARELMTPFAG*
Ga0137358_1021614713300012582Vadose Zone SoilVRPLPDASVDEALAAIGRLEMLADARELLTPFAE*
Ga0137396_1001817973300012918Vadose Zone SoilDCACNAVRPLPDASVDAALTAIGRLEVLADARELLTPFAG*
Ga0137394_1067795223300012922Vadose Zone SoilFRDCARNAVRPLSDSRIDAALTAIGRLETLADATELMAPFAG*
Ga0137394_1120197213300012922Vadose Zone SoilLRAYAAQPLLDASLDGLLAAIGRLETLTDARELMTPFAG*
Ga0137394_1151921413300012922Vadose Zone SoilVRPLSATGFDVALAAIGRLETLADARELMAPFVA*
Ga0137416_1027051533300012927Vadose Zone SoilFEAKFRDCARNVVRPLPDASVDEALAAIGRLEMLADARELLTPFAE*
Ga0126369_1347367213300012971Tropical Forest SoilSDAQFEAKFRDCAGNAVQPLSDASVDAALAAIRRLDEFADARELLTPFAK*
Ga0157378_1193642613300013297Miscanthus RhizosphereFRDCAKNAVRPLSDTSIDAALVAIGRLETLADARELMMPFTG*
Ga0157375_1105914123300013308Miscanthus RhizosphereAQFEAKFRDCARNAVWLRSDTSIDAALAAIGRLETLADAQELMTPFTG*
Ga0182024_1048780413300014501PermafrostGSPEKPLTDAQFEAKFRNCARNAVRSLSDASVDAALAAIKRLETLPNARELVAPFAE*
Ga0132258_1134577913300015371Arabidopsis RhizosphereRDCARYAVRPLPDGSVNAALATIGRLETLPDTRELIAPFAA*
Ga0182036_1005647313300016270SoilKLRDCARNAVQPLSDVNLDGLLAAIGRLETLPDARELMTAFAG
Ga0182041_1075615813300016294SoilNAVRPLSGPSVDAALAAIGRLETLADAGQLMTPFTA
Ga0182033_1166737413300016319SoilKFRDCASNAVQPLSEASLDGLLAAIGRLETLPDARELMTAFAG
Ga0182034_1037252633300016371SoilSEAQLEAKFRDCAGNARRPLPVASVDAALTAIAQLETLADARELLTPFAQ
Ga0182034_1076089213300016371SoilEKPLTNAQLEAKLRDCARNAVQPLSEVSLDGLLAAIGRLETLPDARELMTAFAG
Ga0182040_1009903733300016387SoilLTDAQLEAKFRNCARNAVRPLSSASVDVALAAIGRLKTLADARELMTPFTV
Ga0182040_1093323923300016387SoilEAKLRDCARNAVQPLSDTSLDGLLAAIGRLETLPDARELMTAFGG
Ga0182040_1098428713300016387SoilFEAKFRDCARNAVRPLSGPSVDAALAAIGRLETLADAGQLMTPFTA
Ga0182038_1043535213300016445SoilKPLTNAQLEAKLRDCARNAVQPLSEVSLDGLLAAIGRLETLPDARELMTPFAG
Ga0182038_1084489413300016445SoilAGNARRPLPEASVDAALTAIAQLETLADARELLTPFAQ
Ga0182038_1219755413300016445SoilKFRDCARNAVRPLSGPSVDAALAAIGRLETLAGARELMTPFTA
Ga0187765_1014889833300018060Tropical PeatlandARNAARPLSDASVDAVLAVIGRLETLADARELMTPFVE
Ga0187765_1094388323300018060Tropical PeatlandKPLTDAQFEAKFRDCARNAVRPLSAASVDTALAGIARLEAMTDARELMAAFAG
Ga0187765_1122336113300018060Tropical PeatlandNAAQSLSEASLDRLLAAIDRLETLSDARELMTPFAG
Ga0190265_1355743313300018422SoilFRDRARNAVRPLSDTSIDAVLVAIGRLETLADARELMTPFAG
Ga0066662_1067450633300018468Grasslands SoilMNICSIRGEFRNCARNAVRPLFETSIDAALAAIGRLETLADARELMTPFTG
Ga0193751_119833923300019888SoilKFRDCARNAVQPLSDAGLDALLATIARLEMLPDARELMTPFAG
Ga0210407_1120204613300020579SoilKFRDCARNAVRPLPDASVDGALTAIGRLEMLADARELLTPFAG
Ga0210403_1042034433300020580SoilAGNAVRPVSDASLDELLAAIERLEILPDARELMIAFTG
Ga0210403_1128951623300020580SoilTKFRDCARNAVQPLPDASVDGLLAAIRRLETLPEARELMTAFAG
Ga0210401_1152759323300020583SoilVKVPRCACNAVQPLADASVDAVLATIEQLETLPDARELMAPFAR
Ga0210408_1027195323300021178SoilKFRDCAHNAVRPLPDASVDAALAAIGRLEMLADARELLTPFSV
Ga0213872_1034957833300021361RhizosphereTKFRDCARNAVQPLSDASVDGLLAVIGRLETLPDARALMTASAG
Ga0213876_1054732013300021384Plant RootsARNAVRPLSGPSVDGLLAAVGRLETLPDLRELMTAVSFTD
Ga0210389_1153854323300021404SoilAVQTLSDARVDGLLAAIGRLETLPDARELMTAVDG
Ga0210386_1021580633300021406SoilQLETKFRDCARNAVQPLSDESVDGVLTAIERLETLPDAQELMTAFAG
Ga0210386_1150151323300021406SoilSPAKPLTNAQLETKFPDCARNAVQPLSDASIDPALAAIGRLETLPDASELTTASG
Ga0210384_1048140533300021432SoilNAQLETKFRDCARNAEQPLSDESVDEVLAAIGRLETLPDAQELMTAFAG
Ga0213879_1027325313300021439Bulk SoilAQLEAKFRDCARNAVCPLADADVDAVLPKIWDLAKLPDVRELMQPFAG
Ga0126371_1078017113300021560Tropical Forest SoilLEAKFRDCALNARQPLSNATVDAAVAAIARLDTLPDARELMTPFAG
Ga0242659_112147313300022522SoilQFEAKFRDCARNAAQPLSDAGVDAALATIERLETLPDARELMAPFAAR
Ga0207663_1015308013300025916Corn, Switchgrass And Miscanthus RhizosphereCARNVVRPLPDASVDEALAAIRRLELLADARELLTPFAE
Ga0207649_1128034713300025920Corn RhizosphereFEAKFRDCARNAVRPLSDTSIDAALVAIGRLETLADARELMMPFTG
Ga0207700_1152531813300025928Corn, Switchgrass And Miscanthus RhizosphereLTNAQFEAKFRDCARNAVQPLSDASVDAVMQAIGRLETLPDARELMRSVS
Ga0207664_1193256423300025929Agricultural SoilTNAHFEAKFRDCARNAVRPLSDASVDRLLAAIGRLETLPDARELMTPFAG
Ga0207949_100368713300026999Forest SoilAQLEAKFRDCARNAVQPVSDASVHRLLAAIGRLETLPDARELMTAFAG
Ga0209580_1057325413300027842Surface SoilARNAARPLSDTSIDAALAAIGRLERLADVRELTTPFAG
Ga0209180_1067581413300027846Vadose Zone SoilQFEAKFRDCARNAVQPLPDARVDAVLAAIERLESLPDARELMTPFAG
Ga0209488_1033302633300027903Vadose Zone SoilSDAQFEAKFRDCARNGVRPLPDASVDEALAAIGRLEMLADARELLTPFAE
Ga0222749_1042348023300029636SoilAKFRDCARNAVQPVSDASVHRLLAAIGRLETLPDARELMTAFAG
Ga0170824_10601365933300031231Forest SoilEAKFRDCARNAVQPLSDAGLDALLATIARLEMLPDARELMTPFAG
Ga0170824_11877705423300031231Forest SoilDDQFEAKFRDCARNAVPPLSATGFDAALAAIGRLETLADARELMAPFVA
Ga0318534_1033543113300031544SoilFRDCAGNALRPLSDASVDAALAAIGRLDALPDARELMTPFAG
Ga0318528_1006702833300031561SoilAKFRDCAGNARRPLPEASVDAALTAIAQLETLADARELLTPFAQ
Ga0318515_1004195713300031572SoilAVRPLSGPSVDAALAAIGRLETLADARQLMTPFTA
Ga0318555_1014760523300031640SoilTNAQLATKLRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0318574_1044673133300031680SoilNAQLEAKLRDCARNAVQPLSDVNLDGLLAAIGRLETLPDARELMTAFAG
Ga0318572_1036870723300031681SoilKPLTDDQFEAKFRDCARNAVRPLSGPSVDAALAAIGRLETLADAGQLMTPFTA
Ga0318560_1069839213300031682SoilTAQLETKFRDCARNAVQPLSDASLDGLLAAIGRLETLPDARELMTAFAG
Ga0310686_10239295633300031708SoilAKFRDCARNAVRPLPDASVDTVLAVIGQLEALADARALLAPFAE
Ga0310686_11843912813300031708SoilDAQFEAKFRDCARNAVQPLPGPSVDAVLSAIGRLETLADARELMAPFPA
Ga0318500_1020680413300031724SoilHNAVQSLSDASLDGLLAALRRLETLPDARELMTPFAG
Ga0318500_1023379723300031724SoilFRDCAGNARRPLPEASVDAALTAIAQLETLADARELLTPFAQ
Ga0306918_1095915423300031744SoilEAKFRDCARNAVRPLSGPSVDAALAAIGRLETLADAGQLMTPFTA
Ga0318492_1013795823300031748SoilRDWARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0318554_1025234823300031765SoilAQLATKLRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0318552_1020893113300031782SoilEVKFRDCAHNAVQSLSDASLDGLLAALRRLETLPDARELMTPFAG
Ga0318529_1001924313300031792SoilPEKPLAKIQLETKFRDCARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0318529_1017347623300031792SoilLATKLRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0318548_1034710113300031793SoilGAKFRDCARNAVQPLSDASLDRLLAAIGRLKKLADARELMTPFAG
Ga0318497_1009882023300031805SoilTNAQLEAKLRDCARNAVQPLSDVNLDGLLAAIGRLETLPDARELMTAFAG
Ga0318497_1010674923300031805SoilSPEKPLTNAQLATKLRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0318568_1019615923300031819SoilQLATKLRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0307478_1129062423300031823Hardwood Forest SoilRFEAKFRDCARNAVQPLPDTKVDAVLAAIACLETLPDARDLMTPFAG
Ga0318512_1054900123300031846SoilAKFRDCARNAVQPLSDASLDRLLAAIGRLKKLPDARELMTPFAG
Ga0306919_1006142553300031879SoilEAKLRDCARNAVQPLSDVNLDGLLAAIGRLETLPDARELMTAFAG
Ga0318544_1009162123300031880SoilIQLETKFRDCARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0306925_1126479323300031890SoilAVQPLSDVNLDGLLAAIGRLETLPDARELMTAFAG
Ga0318536_1008104823300031893SoilLETKFRDCARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0318520_1031673023300031897SoilCAGNARRPLPEASVDAALTAIAQLETLADARELLTPFAQ
Ga0306921_1085933123300031912SoilARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0310912_1063505013300031941SoilCARNAVQPLSDTSLDGLLAAIGRLETLPDTRELMTALGGNEAVHRRC
Ga0310916_1048393313300031942SoilNAVQPLSDASLDGLLAAIGRLETLPDARELMTAFAG
Ga0310916_1140621413300031942SoilLEAKFRDCARNAAQPLSDGSVDAALAAIGGLETLPDARELMTPFTG
Ga0310916_1153941613300031942SoilKPLTTAQLEAKFRDCARNAVQSLSDASVDAVLAAIGRLETLPDARELMTPFAGS
Ga0310913_1020937123300031945SoilLRDCARNAVQPLSEVSLDGLLAAIGRLETLPDARELMTAFAG
Ga0310910_1027088313300031946SoilAVRPLSGPSVDAALAAIGRLETLADARQLITPFTA
Ga0310909_1002891913300031947SoilLTNAQLATKPRDCARNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0307479_1008687353300031962Hardwood Forest SoilRDCARNAVQPVSDASVHRLLAAIERLETLPDARELMTAFAG
Ga0307479_1187782513300031962Hardwood Forest SoilPEKPLSDVQFEAKFHDCARNAVRPLPDASVDAVLTAIGRLEMLADARELLTPFAG
Ga0318531_1015229323300031981SoilPIGSPERPLTNAQLATKPRDCARNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0306922_1030472513300032001SoilCARNALRPIPDASVDAALAAIGGLETLPDARELMTLFAG
Ga0318562_1025957923300032008SoilKFRDCAGNARRPLPVASVDAALTAIAQLETLADARELLTPFAQ
Ga0318569_1006576033300032010SoilDCAGNARRPLPEASVDAALTAIAQLETLADARELLTPFAQ
Ga0318507_1019837513300032025SoilKPLTDDQFEAKFRDCARNAVRPLSGPSVDAALAAIGRLETLGDARELMTPFTA
Ga0310911_1036101113300032035SoilRDCACNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0310911_1052410813300032035SoilQLETKFRDCARNAVQPLSDTSLDGLLAAIGRLETLPDTRELMTALGGNEAVHRRC
Ga0318549_1013066513300032041SoilFRDCARNAVQSLSDASLDRLMAAIGRLETLPDARELISAFAG
Ga0318556_1019734323300032043SoilFRDCARNAVQPPSETSLDGLLAAIGRLEMLPDARELMTAFAG
Ga0318506_1050342723300032052SoilQLATKFRDCARNAVQPLSDASLDGLLAAIGRLEALPDARELMTAFAG
Ga0318514_1035769723300032066SoilFRDCARNAVQPLSDASLDRLLAAIGRLKKLPDARELMTPFAG
Ga0307470_1191487723300032174Hardwood Forest SoilLTNAQLETKFRDCARNAVQPLSDESVDGVLAAIGRFETLPDAQELMTAFAG
Ga0307471_10329385513300032180Hardwood Forest SoilMLNSGRKFRDCARNVVRPVSDANVDAAIAVLETLSDARELLSPFAG
Ga0307471_10343053813300032180Hardwood Forest SoilRNAVQPLSDANLDGLLAAIGRLETLPDARELMAAFAG
Ga0306920_10004287713300032261SoilDCARNAVQPLSDASLDGLMAAIGRLETLPDARELISAFAG
Ga0348332_1462180113300032515Plant LitterLTDAQFEAKFRDCARNAVQPLSDASIDATLARIARLEALSDARELMAAFAG
Ga0335085_1075441033300032770SoilARNAVQPLSDASIDATLARTARLEALSDARVLMAAFAG
Ga0310914_1044146523300033289SoilEVKFRDCARNAAQPLSDGSVDAALAVIGRLETLPDARELMTPFTG
Ga0318519_1016072523300033290SoilAVQSLSDASLDGLLAALRRLETLPDARELMTPFAG


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