NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F046398

Metagenome Family F046398

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F046398
Family Type Metagenome
Number of Sequences 151
Average Sequence Length 40 residues
Representative Sequence FRTITRTLRNYFLDRKLGEFPVHVSALERRAPLKPELLGAG
Number of Associated Samples 131
Number of Associated Scaffolds 151

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.66 %
% of genes near scaffold ends (potentially truncated) 98.68 %
% of genes from short scaffolds (< 2000 bps) 90.73 %
Associated GOLD sequencing projects 121
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (94.702 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere
(5.960 % of family members)
Environment Ontology (ENVO) Unclassified
(52.318 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(54.305 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 27.54%    β-sheet: 0.00%    Coil/Unstructured: 72.46%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 151 Family Scaffolds
PF16868NMT1_3 38.41
PF08905DUF1850 19.87
PF09084NMT1 6.62
PF06808DctM 6.62
PF04120Iron_permease 3.31
PF01979Amidohydro_1 2.65
PF13594Obsolete Pfam Family 1.99
PF00291PALP 1.32
PF06127Mpo1-like 1.32
PF03625DUF302 1.32
PF03401TctC 0.66
PF16697Yop-YscD_cpl 0.66
PF12974Phosphonate-bd 0.66
PF02880PGM_PMM_III 0.66
PF00685Sulfotransfer_1 0.66
PF13450NAD_binding_8 0.66

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 151 Family Scaffolds
COG4729Uncharacterized conserved protein, DUF1850 familyFunction unknown [S] 19.87
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 6.62
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 6.62
COG3439Uncharacterized conserved protein, DUF302 familyFunction unknown [S] 1.32
COG45392-hydroxy fatty acid dioxygenase MPO1 (alpha-oxidation of fatty acids)Lipid transport and metabolism [I] 1.32
COG0033Phosphoglucomutase/phosphomannomutaseCarbohydrate transport and metabolism [G] 0.66
COG1109PhosphomannomutaseCarbohydrate transport and metabolism [G] 0.66
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 0.66


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.70 %
UnclassifiedrootN/A5.30 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001213|JGIcombinedJ13530_107496778All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria620Open in IMG/M
3300002562|JGI25382J37095_10229681All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium560Open in IMG/M
3300005177|Ga0066690_10131372All Organisms → cellular organisms → Bacteria → Proteobacteria1634Open in IMG/M
3300005329|Ga0070683_100064741All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Noviherbaspirillum → Noviherbaspirillum massiliense3403Open in IMG/M
3300005332|Ga0066388_102221375All Organisms → cellular organisms → Bacteria → Proteobacteria991Open in IMG/M
3300005332|Ga0066388_108210440All Organisms → cellular organisms → Bacteria → Proteobacteria521Open in IMG/M
3300005333|Ga0070677_10075644All Organisms → cellular organisms → Bacteria → Proteobacteria1428Open in IMG/M
3300005334|Ga0068869_100125114All Organisms → cellular organisms → Bacteria → Proteobacteria1971Open in IMG/M
3300005337|Ga0070682_101564991All Organisms → cellular organisms → Bacteria → Proteobacteria569Open in IMG/M
3300005347|Ga0070668_102270634All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300005355|Ga0070671_101740102All Organisms → cellular organisms → Bacteria → Proteobacteria553Open in IMG/M
3300005367|Ga0070667_101555023All Organisms → cellular organisms → Bacteria → Proteobacteria621Open in IMG/M
3300005441|Ga0070700_101866497All Organisms → cellular organisms → Bacteria → Proteobacteria519Open in IMG/M
3300005446|Ga0066686_11051150All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria526Open in IMG/M
3300005455|Ga0070663_101825696All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae545Open in IMG/M
3300005468|Ga0070707_100285486All Organisms → cellular organisms → Bacteria → Proteobacteria1604Open in IMG/M
3300005543|Ga0070672_100078929All Organisms → cellular organisms → Bacteria → Proteobacteria2634Open in IMG/M
3300005543|Ga0070672_100783895All Organisms → cellular organisms → Bacteria838Open in IMG/M
3300005545|Ga0070695_100463883All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria973Open in IMG/M
3300005563|Ga0068855_100430262All Organisms → cellular organisms → Bacteria1443Open in IMG/M
3300005564|Ga0070664_100133394All Organisms → cellular organisms → Bacteria → Proteobacteria2182Open in IMG/M
3300005578|Ga0068854_101187449Not Available683Open in IMG/M
3300005578|Ga0068854_101456182All Organisms → cellular organisms → Bacteria → Proteobacteria621Open in IMG/M
3300005616|Ga0068852_101131240All Organisms → cellular organisms → Bacteria803Open in IMG/M
3300005617|Ga0068859_100109151All Organisms → cellular organisms → Bacteria → Proteobacteria2828Open in IMG/M
3300005617|Ga0068859_100830054All Organisms → cellular organisms → Bacteria → Proteobacteria1011Open in IMG/M
3300005617|Ga0068859_102922257All Organisms → cellular organisms → Bacteria → Proteobacteria523Open in IMG/M
3300005618|Ga0068864_100121636All Organisms → cellular organisms → Bacteria → Proteobacteria2335Open in IMG/M
3300005718|Ga0068866_10773295All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300005718|Ga0068866_11408933All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300005719|Ga0068861_101358506All Organisms → cellular organisms → Bacteria → Proteobacteria693Open in IMG/M
3300005840|Ga0068870_10931360All Organisms → cellular organisms → Bacteria → Proteobacteria616Open in IMG/M
3300005841|Ga0068863_101964566All Organisms → cellular organisms → Bacteria → Proteobacteria595Open in IMG/M
3300005842|Ga0068858_102581067All Organisms → cellular organisms → Bacteria → Proteobacteria502Open in IMG/M
3300005994|Ga0066789_10103673All Organisms → cellular organisms → Bacteria → Proteobacteria1221Open in IMG/M
3300006028|Ga0070717_10524219All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1072Open in IMG/M
3300006358|Ga0068871_101553264All Organisms → cellular organisms → Bacteria626Open in IMG/M
3300006880|Ga0075429_101940206All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300007004|Ga0079218_13000406All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria568Open in IMG/M
3300007076|Ga0075435_101249879All Organisms → cellular organisms → Bacteria650Open in IMG/M
3300009012|Ga0066710_100641670All Organisms → cellular organisms → Bacteria → Proteobacteria1614Open in IMG/M
3300009092|Ga0105250_10388887All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300009111|Ga0115026_11944254All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300009137|Ga0066709_101502407All Organisms → cellular organisms → Bacteria → Proteobacteria972Open in IMG/M
3300009162|Ga0075423_10457236All Organisms → cellular organisms → Bacteria1342Open in IMG/M
3300009174|Ga0105241_10571467Not Available1018Open in IMG/M
3300009176|Ga0105242_11845242All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria644Open in IMG/M
3300009177|Ga0105248_10071495All Organisms → cellular organisms → Bacteria → Proteobacteria3898Open in IMG/M
3300009177|Ga0105248_12854855All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300009792|Ga0126374_11889637All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300010043|Ga0126380_11520343All Organisms → cellular organisms → Bacteria594Open in IMG/M
3300010326|Ga0134065_10063184All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1166Open in IMG/M
3300010337|Ga0134062_10335940All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium724Open in IMG/M
3300010361|Ga0126378_11432352All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300010364|Ga0134066_10136171All Organisms → cellular organisms → Bacteria → Proteobacteria756Open in IMG/M
3300010371|Ga0134125_10101449All Organisms → cellular organisms → Bacteria3204Open in IMG/M
3300010399|Ga0134127_10972806All Organisms → cellular organisms → Bacteria → Proteobacteria907Open in IMG/M
3300012185|Ga0136619_10289827Not Available621Open in IMG/M
3300012198|Ga0137364_10424373All Organisms → cellular organisms → Bacteria996Open in IMG/M
3300012202|Ga0137363_11537869All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria557Open in IMG/M
3300012207|Ga0137381_10798994All Organisms → cellular organisms → Bacteria → Proteobacteria818Open in IMG/M
3300012285|Ga0137370_10545042All Organisms → cellular organisms → Bacteria → Proteobacteria713Open in IMG/M
3300012349|Ga0137387_10419011All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria971Open in IMG/M
3300012353|Ga0137367_11150395All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria521Open in IMG/M
3300012955|Ga0164298_10314959All Organisms → cellular organisms → Bacteria975Open in IMG/M
3300013297|Ga0157378_11388228All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300013307|Ga0157372_10522697All Organisms → cellular organisms → Bacteria → Proteobacteria1383Open in IMG/M
3300013308|Ga0157375_10602662All Organisms → cellular organisms → Bacteria1257Open in IMG/M
3300014325|Ga0163163_10057467All Organisms → cellular organisms → Bacteria → Proteobacteria3847Open in IMG/M
3300014326|Ga0157380_10263538All Organisms → cellular organisms → Bacteria → Proteobacteria1567Open in IMG/M
3300015080|Ga0167639_1021847All Organisms → cellular organisms → Bacteria → Proteobacteria898Open in IMG/M
3300017792|Ga0163161_10462007All Organisms → cellular organisms → Bacteria → Proteobacteria1028Open in IMG/M
3300017792|Ga0163161_10986579Not Available718Open in IMG/M
3300017994|Ga0187822_10257220All Organisms → cellular organisms → Bacteria → Proteobacteria602Open in IMG/M
3300018051|Ga0184620_10137607All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300018071|Ga0184618_10023468All Organisms → cellular organisms → Bacteria2048Open in IMG/M
3300018078|Ga0184612_10623782All Organisms → cellular organisms → Bacteria → Proteobacteria508Open in IMG/M
3300020167|Ga0194035_1187048All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300021080|Ga0210382_10018467All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales2489Open in IMG/M
3300021478|Ga0210402_11254940All Organisms → cellular organisms → Bacteria → Proteobacteria668Open in IMG/M
3300025790|Ga0210075_1103128All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas504Open in IMG/M
3300025906|Ga0207699_10599609All Organisms → cellular organisms → Bacteria → Proteobacteria802Open in IMG/M
3300025907|Ga0207645_10137829All Organisms → cellular organisms → Bacteria → Proteobacteria1589Open in IMG/M
3300025907|Ga0207645_10617456All Organisms → cellular organisms → Bacteria → Proteobacteria736Open in IMG/M
3300025907|Ga0207645_10824585All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300025922|Ga0207646_11763563All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria530Open in IMG/M
3300025925|Ga0207650_10572202All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300025927|Ga0207687_10458117Not Available1059Open in IMG/M
3300025927|Ga0207687_11087751All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300025927|Ga0207687_11362662All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300025931|Ga0207644_10394730All Organisms → cellular organisms → Bacteria1130Open in IMG/M
3300025932|Ga0207690_11127752All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae654Open in IMG/M
3300025933|Ga0207706_10875946All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300025937|Ga0207669_11735969All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300025942|Ga0207689_10692334Not Available859Open in IMG/M
3300025945|Ga0207679_10055604All Organisms → cellular organisms → Bacteria → Proteobacteria2918Open in IMG/M
3300025945|Ga0207679_11505301All Organisms → cellular organisms → Bacteria617Open in IMG/M
3300025956|Ga0210104_1007724All Organisms → cellular organisms → Bacteria → Proteobacteria1291Open in IMG/M
3300025981|Ga0207640_10456601All Organisms → cellular organisms → Bacteria1054Open in IMG/M
3300025981|Ga0207640_11160528Not Available685Open in IMG/M
3300025986|Ga0207658_10030065All Organisms → cellular organisms → Bacteria → Proteobacteria3842Open in IMG/M
3300025986|Ga0207658_10474401All Organisms → cellular organisms → Bacteria1111Open in IMG/M
3300026035|Ga0207703_12100537All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300026041|Ga0207639_11928367All Organisms → cellular organisms → Bacteria → Proteobacteria552Open in IMG/M
3300026067|Ga0207678_11281703All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300026078|Ga0207702_12110006All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300026088|Ga0207641_10319376All Organisms → cellular organisms → Bacteria → Proteobacteria1472Open in IMG/M
3300026089|Ga0207648_11497025All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300026089|Ga0207648_11855980All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300026121|Ga0207683_12161874All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300026142|Ga0207698_10898586All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300027471|Ga0209995_1036739All Organisms → cellular organisms → Bacteria → Proteobacteria825Open in IMG/M
3300027682|Ga0209971_1067591All Organisms → cellular organisms → Bacteria867Open in IMG/M
3300027885|Ga0209450_10953742All Organisms → cellular organisms → Bacteria611Open in IMG/M
3300028679|Ga0302169_10101213All Organisms → cellular organisms → Bacteria → Proteobacteria699Open in IMG/M
3300028856|Ga0302295_1089363All Organisms → cellular organisms → Bacteria → Proteobacteria677Open in IMG/M
3300030019|Ga0311348_10324375All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1148Open in IMG/M
3300030114|Ga0311333_10662443All Organisms → cellular organisms → Bacteria → Proteobacteria868Open in IMG/M
3300030294|Ga0311349_11345817All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria664Open in IMG/M
3300030838|Ga0311335_10666957All Organisms → cellular organisms → Bacteria → Proteobacteria730Open in IMG/M
3300031521|Ga0311364_10784360All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales956Open in IMG/M
3300031546|Ga0318538_10041277All Organisms → cellular organisms → Bacteria → Proteobacteria2216Open in IMG/M
3300031640|Ga0318555_10072419All Organisms → cellular organisms → Bacteria → Proteobacteria1783Open in IMG/M
3300031720|Ga0307469_11331708All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300031768|Ga0318509_10081251All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1719Open in IMG/M
3300031771|Ga0318546_10853548All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300031834|Ga0315290_10658470All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300031846|Ga0318512_10263291Not Available853Open in IMG/M
3300031918|Ga0311367_10222285All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1973Open in IMG/M
3300031918|Ga0311367_11758867All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria603Open in IMG/M
3300031939|Ga0308174_10715130All Organisms → cellular organisms → Bacteria → Proteobacteria837Open in IMG/M
3300031939|Ga0308174_11041987All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales695Open in IMG/M
3300031954|Ga0306926_12363250All Organisms → cellular organisms → Bacteria587Open in IMG/M
3300031995|Ga0307409_101860745All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300031996|Ga0308176_10408338All Organisms → cellular organisms → Bacteria → Proteobacteria1357Open in IMG/M
3300031997|Ga0315278_11808276All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria577Open in IMG/M
3300032005|Ga0307411_10090353All Organisms → cellular organisms → Bacteria → Proteobacteria2136Open in IMG/M
3300032008|Ga0318562_10605272All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria633Open in IMG/M
3300032075|Ga0310890_11199010All Organisms → cellular organisms → Bacteria → Proteobacteria618Open in IMG/M
3300032143|Ga0315292_11023960All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300032173|Ga0315268_10439560All Organisms → cellular organisms → Bacteria1281Open in IMG/M
3300032205|Ga0307472_100600963All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300032205|Ga0307472_101166008All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300032954|Ga0335083_10995682All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales660Open in IMG/M
3300033004|Ga0335084_11074892All Organisms → cellular organisms → Bacteria808Open in IMG/M
3300033413|Ga0316603_11379694All Organisms → cellular organisms → Bacteria → Proteobacteria668Open in IMG/M
3300033419|Ga0316601_101825388All Organisms → cellular organisms → Bacteria613Open in IMG/M
3300033480|Ga0316620_10399920All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1241Open in IMG/M
3300033480|Ga0316620_12268045All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300033482|Ga0316627_102015564All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300034196|Ga0370503_0085647All Organisms → cellular organisms → Bacteria1061Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen5.96%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere5.96%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere5.96%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.64%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil4.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere4.64%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.64%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere4.64%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.64%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.97%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.97%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil2.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.65%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.99%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.99%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.99%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.99%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.99%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.99%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.32%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil1.32%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.32%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.32%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere1.32%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.32%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere1.32%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.32%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.32%
WetlandEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland0.66%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment0.66%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.66%
Anoxic Zone FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater0.66%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.66%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand0.66%
WetlandEnvironmental → Aquatic → Marine → Wetlands → Sediment → Wetland0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.66%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.66%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.66%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.66%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil0.66%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.66%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.66%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.66%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.66%

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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001213Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)EnvironmentalOpen in IMG/M
3300002562Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cmEnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005329Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005333Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005355Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaGHost-AssociatedOpen in IMG/M
3300005367Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005718Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2Host-AssociatedOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009092Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaGHost-AssociatedOpen in IMG/M
3300009111Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010043Tropical forest soil microbial communities from Panama - MetaG Plot_26EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010364Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015EnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300012185Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012285Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012955Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300015080Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6C, Proglacial plain, adjacent to northern proglacial tributary)EnvironmentalOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018051Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018078Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coexEnvironmentalOpen in IMG/M
3300020167Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20mEnvironmentalOpen in IMG/M
3300021080Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redoEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300025790Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025907Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025956Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026067Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026142Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300027471Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027682Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027885Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - LWP11 LW (SPAdes)EnvironmentalOpen in IMG/M
3300028679Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_N1_3EnvironmentalOpen in IMG/M
3300028856Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N2_4EnvironmentalOpen in IMG/M
3300030019II_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030114I_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300030294II_Fen_E3 coassemblyEnvironmentalOpen in IMG/M
3300030838I_Fen_N1 coassemblyEnvironmentalOpen in IMG/M
3300031521III_Fen_E2 coassemblyEnvironmentalOpen in IMG/M
3300031546Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23EnvironmentalOpen in IMG/M
3300031640Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031834Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031918III_Fen_N3 coassemblyEnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031954Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300031997Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0EnvironmentalOpen in IMG/M
3300032005Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1Host-AssociatedOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032143Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0EnvironmentalOpen in IMG/M
3300032173Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_topEnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032954Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033419Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCTEnvironmentalOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300033482Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_CEnvironmentalOpen in IMG/M
3300034196Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_18EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ13530_10749677813300001213WetlandFRTITRTLRNYFLDRRQGAFPLRLSTLERRPPVKPDLVGAG*
JGI25382J37095_1022968113300002562Grasslands SoilAFRTITRTLRNYFLDRKLGEFPVRVSALEKRAPLKPELLGAG*
Ga0066690_1013137233300005177SoilGDLAFRTITRTLRNYFLDRKLGAFPLHVSALEKRAPREPGLAGAA*
Ga0070683_10006474113300005329Corn RhizosphereTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0066388_10222137513300005332Tropical Forest SoilGELAFRTIARTLRNYFLDRKLGAFPTRVSVIERRAARDPALLGAG*
Ga0066388_10821044023300005332Tropical Forest SoilMAFRTITRTLRNFFLDRKRGSFPVHVSALTRRVPLRPELSGAG*
Ga0070677_1007564413300005333Miscanthus RhizosphereAFRTITRTLRTFFLDRKLGEFPVRVSSLERRPPVSPDLRGAA*
Ga0068869_10012511433300005334Miscanthus RhizosphereFRTIARTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA*
Ga0070682_10156499123300005337Corn RhizosphereEVPWESLAFRTIARTLRNFFLDRRLDAFALHVSAIERRPPLTPDLLAAG*
Ga0070668_10227063413300005347Switchgrass RhizosphereTITRTLRNYFLDRRQRAFPLRVSSLERRPPLPPDLLAAG*
Ga0070671_10174010213300005355Switchgrass RhizosphereIAFRTIARTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA*
Ga0070667_10155502313300005367Switchgrass RhizosphereWAELAFRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0070700_10186649713300005441Corn, Switchgrass And Miscanthus RhizosphereFRTIGRTLRNYFLDRKLGRFPTRVSVLERRAPRPDLAAAA*
Ga0066686_1105115023300005446SoilFRTIARTLRNYFLDRKLQRLRLHVSALEKRTALKPELAGAA*
Ga0070663_10182569613300005455Corn RhizosphereTIGRTLRRYFLDRRMGRFGLHVSAIERRPPLTPDLLAAG*
Ga0070707_10028548623300005468Corn, Switchgrass And Miscanthus RhizosphereLAFRTIARTLRNYFLDRKLGEFPVHVSALERRAPRPELSGAA*
Ga0070672_10007892933300005543Miscanthus RhizosphereFRTITRTLRNYFLDRRQNAYPVRVSSLERRPPLPPDLLAAG*
Ga0070672_10078389523300005543Miscanthus RhizosphereRTIGRTLRNYFLDRKLGAFPTRVSVLERRAPRPDLAGAA*
Ga0070695_10046388313300005545Corn, Switchgrass And Miscanthus RhizosphereLAFRTIGRTLRNFFLDRRLDAFSLHVSAIERRPPLTPDLLAAG*
Ga0068855_10043026213300005563Corn RhizosphereLRNYFLDRRLGRFTMHVSAIERRAPLTPDLLAAG*
Ga0070664_10013339413300005564Corn RhizosphereIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0068854_10118744923300005578Corn RhizosphereLAFRTIGRTLRNYFLDRKLGQFPTRVSVLERRAPRPDLAAAA*
Ga0068854_10145618213300005578Corn RhizosphereRTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA*
Ga0068852_10113124023300005616Corn RhizosphereARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0068859_10010915133300005617Switchgrass RhizosphereFRTITRTLRNYFLDRRQNAYPVRVSSLERRPPLPPDLLAAA*
Ga0068859_10083005423300005617Switchgrass RhizosphereFRTITRTLRNFFLDRKLGQFPLHISSIERRPPLPPDLRGAA*
Ga0068859_10292225713300005617Switchgrass RhizosphereRTITRTLRTYFLDRKLGSFPVRVSALARRPPVGPDLRGAA*
Ga0068864_10012163633300005618Switchgrass RhizosphereIPWEALAFRTITRTLRNYFLDRRQNAYPVRVSSLERRPPLPPDLLAAG*
Ga0068866_1077329523300005718Miscanthus RhizosphereTRTLRNFFLDRKLGQFPLRVSALQRRPPLPPDLRGAG*
Ga0068866_1140893313300005718Miscanthus RhizosphereTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA*
Ga0068861_10135850613300005719Switchgrass RhizosphereAFRTIARTLRNYFMDRRRGGFALHVSAIERRAPLTPDLLAAG*
Ga0068870_1093136023300005840Miscanthus RhizosphereTIGRTLRNYFLDRKLGRFPTHVSVLERRAPRPDLEAAA*
Ga0068863_10196456613300005841Switchgrass RhizosphereRTLRNYFLDRREGAFPLRLSTLERRPAPPDLRGAA*
Ga0068858_10258106713300005842Switchgrass RhizosphereTLRNFFLDRKLGAFPIRVSAIERRPPLPPDLRGAA*
Ga0066789_1010367333300005994SoilQLAFRTISRSLRNYFLDRKLGRFPVRVSTIDRRVPAKPQVPAPT*
Ga0070717_1052421913300006028Corn, Switchgrass And Miscanthus RhizosphereTIARTLRNYFLDRKLGTFPVHVSTIERRVPLPPAATGAA*
Ga0068871_10155326423300006358Miscanthus RhizosphereTLRNYFLDRREGAFPLRLSTLERRPPPPDLGGAA*
Ga0075429_10194020613300006880Populus RhizosphereFRTIGRTLRNYFLDRKLGHFPTRVSVLERRAPRPDLEAAA*
Ga0079218_1300040613300007004Agricultural SoilLAFRTITRTLRNYFLDRKLGAFPVRVSALERRVPARPELSGAG*
Ga0075435_10124987913300007076Populus RhizosphereRTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0066710_10064167033300009012Grasslands SoilFRTITRTLRNYFLDRKLGEFPVHVSALERRAPLKPELLGAG
Ga0105250_1038888713300009092Switchgrass RhizosphereRTITRTLRNFFLDRKLGRFPLRVSALQRRPPLPPDLRGAG*
Ga0115026_1194425413300009111WetlandWEDMAFRTIGRTLRNYFVDRRLGAFPTRVSALERRLPRPDLGGAG*
Ga0066709_10150240713300009137Grasslands SoilIARTLRNYFLDRKLGEFPVHVSALEKRAPRPELSGAA*
Ga0075423_1045723623300009162Populus RhizosphereVPWEAIAFRSIARTLRNYFLDRRQRAFNLHVSALERRPPLTPDLLAAG*
Ga0105241_1057146713300009174Corn RhizosphereDIAFRTIARTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA*
Ga0105242_1184524213300009176Miscanthus RhizosphereTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0105248_1007149513300009177Switchgrass RhizosphereRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0105248_1285485513300009177Switchgrass RhizosphereIGRTLRNYFLDRKLGTLQTRVSALERRAPRPDLSGAG*
Ga0126374_1188963713300009792Tropical Forest SoilRTLRNYFLDRKLGAFPTRVSVIERRAARDPALLGAG*
Ga0126380_1152034313300010043Tropical Forest SoilTITRTLRNYFLDRKLGAFPTHVSALERRARPQPELQGAG*
Ga0134065_1006318413300010326Grasslands SoilSEIAFRTITRTLRNYFLDRKLGDFPVRVSALEKRAPLKPELLGAG*
Ga0134062_1033594013300010337Grasslands SoilTLRNYFLDRKLGDFPVRVSALEKRAPLKPELLGAG*
Ga0126378_1143235213300010361Tropical Forest SoilRTLRNYFLDRKLGAFPTHVSALERRAPRPDLSGAA*
Ga0134066_1013617133300010364Grasslands SoilFRTITRTLRNFFLDRKQGSFPVHVSALTRRVPLRPELSGAG*
Ga0134125_1010144913300010371Terrestrial SoilRTIARTLRNYFLDRRLGRFTMHVSAIERRAPLTPDLLAAG*
Ga0134127_1097280613300010399Terrestrial SoilIAFRTIARTLRHYFLDRKLGAFPLHVSALFKRSPREPGLQAAA*
Ga0136619_1028982713300012185Polar Desert SandLAFRTITRTLRNFFLDRKLGNEATHVSALVRRAPVPPDLRGAA*
Ga0137364_1042437313300012198Vadose Zone SoilRTITRTLRNYFLDRKLGAFPLHVSALEKRAPREPALAGAA*
Ga0137363_1153786913300012202Vadose Zone SoilTRTLRNYFLDRKLGGFPVHVSALERRVPVKPDLVGAG*
Ga0137381_1079899413300012207Vadose Zone SoilLAFRTIARTLRNYFLDRKLGEFPVHVSALEKRTPRPELSGAA*
Ga0137370_1054504213300012285Vadose Zone SoilGDLAFRTITRTLRNYFLDRKRGAFPLHVSALEKRAPREPALAGAA*
Ga0137387_1041901113300012349Vadose Zone SoilARTLRNYFLDRKLGEFPVHVSALEKRTPRPELSGAA*
Ga0137367_1115039513300012353Vadose Zone SoilFRTIGRTLRNYFLDRKLGGFPVHVSTLVRRQGVTPALTGAA*
Ga0164298_1031495923300012955SoilFRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0157378_1138822813300013297Miscanthus RhizosphereFRTIGRTLRNYFLDRKLGTLQTRVSALERRAPRPDLSGAG*
Ga0157372_1052269733300013307Corn RhizosphereLRNFFLDRRLGAFALHVSAIERRPPLTPELLAAG*
Ga0157375_1060266223300013308Miscanthus RhizosphereWESLAFRTITRTLRTYFLDRKLGSFPVRVSALARRPPVGPDLRGAA*
Ga0163163_1005746753300014325Switchgrass RhizosphereLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0157380_1026353813300014326Switchgrass RhizosphereLAFRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG*
Ga0167639_102184723300015080Glacier Forefield SoilTRTLRNYFLDRKLGAFPVHVSALEKRVPREPALAGAA*
Ga0163161_1046200713300017792Switchgrass RhizosphereRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0163161_1098657913300017792Switchgrass RhizosphereQLAFRTITRTLRNYFLDRKLGAFPVRVSALERRVPAKPELSGAG
Ga0187822_1025722013300017994Freshwater SedimentTLRNFFLDRRLDAFALHVSAIERRPPLTPDLLAAG
Ga0184620_1013760723300018051Groundwater SedimentIGRTLRNYFHDRKLGTFPTRLSVLERKAPRPDLSGAA
Ga0184618_1002346833300018071Groundwater SedimentPWETLAFRTIARTLRNWFLDRRSGAFPLRMSALERRGPPPPDLAAAA
Ga0184612_1062378223300018078Groundwater SedimentTRTLRNYFLDRKLGSFPVRLSSLERRPPLPPDLLAAG
Ga0194035_118704813300020167Anoxic Zone FreshwaterALAFRTITRTLRNYFLDRKRGVFPVRVSSLERKAARSG
Ga0210382_1001846713300021080Groundwater SedimentTLRNYFLDRKLGAFTVHVSALEKRAPREPALAAAA
Ga0210402_1125494023300021478SoilGRTLRNYFLDRKLGAFPLHVSAVDRRLPREASLAAAA
Ga0210075_110312823300025790Natural And Restored WetlandsFRTITRTLRNYFLDRKNGSFPTRVSTLVRKPPPADLSGAG
Ga0207699_1059960913300025906Corn, Switchgrass And Miscanthus RhizosphereIARTLRNFFLDRRLGRFSLHVSSIERRAPLPPDLLAAG
Ga0207645_1013782933300025907Miscanthus RhizosphereFRTIGRTLRNYFLDRKLGTFPTRVSALERKAPRPDLAGAA
Ga0207645_1061745633300025907Miscanthus RhizosphereTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA
Ga0207645_1082458513300025907Miscanthus RhizosphereESLACRTSARTLRNYFMDRRRGGFALHVSAIERRAPLSPDLLAAG
Ga0207646_1176356313300025922Corn, Switchgrass And Miscanthus RhizosphereFRTIARTLRNYFLDRKLGEFPVHVSALERRAPRPELSGAA
Ga0207650_1057220213300025925Switchgrass RhizospherePWEALAFRTITRTLRNYFLDRRQNAYPVRVSSLERRPPLPPDLLAAA
Ga0207687_1045811713300025927Miscanthus RhizosphereFRTIARTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA
Ga0207687_1108775113300025927Miscanthus RhizospherePWAELAFRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207687_1136266213300025927Miscanthus RhizosphereAFRTITRTLRNYFLDRRQNAYPVRVSSLERRPPLPPDLLAAG
Ga0207644_1039473013300025931Switchgrass RhizosphereTLRTFFLDRKLGEFPVRVSSLERRPPVSPDLRGAA
Ga0207690_1112775213300025932Corn RhizosphereIGRTLRNYFLDRKLGTFPTRLSVLERKAPRPDMSGAA
Ga0207706_1087594613300025933Corn RhizosphereRTIARTLRNFLLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207669_1173596923300025937Miscanthus RhizosphereRTIGRTLRNYFLDRKLGTFPTRVSALERKAPRPDLAGAA
Ga0207689_1069233413300025942Miscanthus RhizosphereIARTLRNYFLDRKLGAFPLHVSALFKRSPREPALQAAA
Ga0207679_1005560413300025945Corn RhizosphereIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207679_1150530113300025945Corn RhizosphereRTIGRTLRRFFLDRRLGAFGLHVSALERRPPLTPDLVAAG
Ga0210104_100772413300025956Natural And Restored WetlandsGRTLRNYFLDRKLGAFPTRVSVLERKAPQPDLSGAA
Ga0207640_1045660113300025981Corn RhizosphereTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207640_1116052823300025981Corn RhizosphereLAFRTIGRTLRNYFLDRKLGQFPTRVSVLERRAPRPDLAAAA
Ga0207658_1003006513300025986Switchgrass RhizosphereRTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207658_1047440113300025986Switchgrass RhizosphereDSIPWEDLAFRTIGRTLRNYFLDRKLGTLQTRVSALERKVVRPDLSGAG
Ga0207703_1210053723300026035Switchgrass RhizosphereAFRTIGRTLRNYFLDRKLGTFPTRLSVLERKAPRPDMSGAA
Ga0207639_1192836723300026041Corn RhizosphereEVPWESLAFRTIARTLRNFFLDRRLDAFALHVSAIERRPPLTPDLLAAG
Ga0207678_1128170323300026067Corn RhizosphereIAFRTIGRTLRRYFLDRRMGRFGLHVSAIERRPPLTPDLLAAG
Ga0207702_1211000623300026078Corn RhizosphereFRTIARTLRNFFLDRRLGAFKLHVSSIERRAPLPPDLLAAG
Ga0207641_1031937613300026088Switchgrass RhizosphereAFRTITRTLRNYFLDRRYGTFRVHVSALTRRVPLRPELSGAG
Ga0207648_1149702513300026089Miscanthus RhizosphereRTITRTLRNFFLDRKLGAFPIRVSAIERRPPLPPDLRGAA
Ga0207648_1185598013300026089Miscanthus RhizosphereESLAFRTIARTLRNYFMDRRRGDFTLHVSAIERRAPLTPDLLAAG
Ga0207683_1216187413300026121Miscanthus RhizosphereMAFRTIGRTLRNYFLDRKLGSFPTRVSALERKAPRPDLAGAA
Ga0207698_1089858613300026142Corn RhizosphereLAFRTITRTLRNYFLDRKLGEFPVRVSALERRPESRPRGIPVP
Ga0209995_103673913300027471Arabidopsis Thaliana RhizosphereFRTIARTLRNYFLDRRMSSFSLHVSSIERRAPLTPDLLAAG
Ga0209971_106759123300027682Arabidopsis Thaliana RhizosphereIARTLRNYFLDRRRGAFRLHVSALARRSPITPDLLAAG
Ga0209450_1095374223300027885Freshwater Lake SedimentLAFRTIARTLRNYFVDRRLGSFPLRVSALERKPPR
Ga0302169_1010121333300028679FenTITRTLRNYFLDRKQGAFPVRVSSLERRPPLPPDLLAAG
Ga0302295_108936313300028856FenLAFRTITRTLRNYFLDRKQGGFPLRLSALERRPPLPPDLLAAG
Ga0311348_1032437513300030019FenLAFRTIARTLRNYFLDRKLGAFPVHESALERRAPVPPSLSGAG
Ga0311333_1066244333300030114FenWESLAFRTITRTLRNYFLDRKQGAFPVRVSSLERRPPLPPDLLAAG
Ga0311349_1134581713300030294FenIGRTLRNYFLDRKVGAFPTRVSTLIRKPPRPDVIGAA
Ga0311335_1066695713300030838FenESLAFRTIARTLRNYFLDRKQGGFPLRLSALERRPPLPPDLLAAG
Ga0311364_1078436033300031521FenARTLRNYFLDRKQGGFPLRLSALERRPPLPPDLLAAG
Ga0318538_1004127713300031546SoilIAFRTITRTLRNFFLDRKLGAFPTHVSIIERRAARDPRLSGAG
Ga0318555_1007241913300031640SoilNEIAFRTITRTLRNFFLDRKLGAFPTHVSIIERRAARDPRLSGAG
Ga0307469_1133170813300031720Hardwood Forest SoilIGRTLRNYFLDRKLGTLRTRVSALERRAPRPDLSGAA
Ga0318509_1008125113300031768SoilFRTITRTLRNFFLDRKLGAFPTHVSIIERRAARDPRLSGAG
Ga0318546_1085354813300031771SoilLAFRTIGRTLRNYFLDRKLGAFGTHVSALERRAPRPDLSGAG
Ga0315290_1065847013300031834SedimentTIGRTLRNYFLDRKLGAFPTRVSVLERKAPRPDLSGAA
Ga0318512_1026329113300031846SoilITRTLRNFFLDRKLGAFPTHVSIIERRAARDPRLSGAG
Ga0311367_1022228513300031918FenTITRTLRNYFLDRKQGGFPLRLSALERRPPLPPDLLAAG
Ga0311367_1175886723300031918FenLAFRTITRTLRNYFLDRKQGACPVRVSSLERRLPLPMDLLAAG
Ga0308174_1071513033300031939SoilRTIARTLRNYFLDRRLGAFTMHVSAIERRTALTPDLLAGG
Ga0308174_1104198733300031939SoilFRTIGRTLRRYFLDRRLGSFGLHVSSIERRPPLAPDLLAAG
Ga0306926_1236325013300031954SoilITRTLRNYFLDRKLGAFPTHVSALERRARPQPELLGAG
Ga0307409_10186074523300031995RhizosphereFRTIARTLRTFFLDRKLGAFPVRVSSLERRPPVSPDLRGAA
Ga0308176_1040833843300031996SoilARTLRNYFLDRRLGRFALHVSAIERRSPLTPDLLAAG
Ga0315278_1180827623300031997SedimentLAFRTITRTLRSYFLDRKLGAFPVRVSVLERRPPVRPEFAAAG
Ga0307411_1009035333300032005RhizosphereIGRTLRNWFLDRKLGTFGVHVSSLERRPPLPPNLLGAG
Ga0318562_1060527213300032008SoilFRTITRTLRNFFLDRKLGAFPTHVSVIERRAARDPRLSGAG
Ga0310890_1119901023300032075SoilLAFRTITRTLRTYFLDRKLGSFPVRVSALARRPPVGPDLRGAA
Ga0315292_1102396013300032143SedimentGRTLRNYFLDRKLGVFPTRVSVLERRAPRPDLSGAA
Ga0315268_1043956023300032173SedimentTIGRTLRNYFLDRKLGVFPTRVSVLERKAPRPDLAGAG
Ga0307472_10060096313300032205Hardwood Forest SoilFRTIGRTLRNFFLDRKLGSFPVRLSTIDRRVPPKPDVAGAA
Ga0307472_10116600823300032205Hardwood Forest SoilRTLRNYFLDRKLGTLQTRVSALERRAPRPELSGAG
Ga0335083_1099568233300032954SoilTIGRTLRNYFLDRRRGAFGTHVSALERKAPRPDLSGAG
Ga0335084_1107489213300033004SoilEMAFRTIGRTLRNYFLDRKLGHFPMRVSVLERRAPRPDLAGAA
Ga0316603_1137969413300033413SoilFRTITRTLRSFFLDRRLGAYPTRVSALERRPQAKPDLSGAG
Ga0316601_10182538823300033419SoilLAFRTITRTLRRYFLDRRHGAYATHVSALERRPADRRADLTGAA
Ga0316620_1039992033300033480SoilEELAFRTIARTLRNYFLDRKLGSFPPHVSTLHKHVPLPADLTAAA
Ga0316620_1226804523300033480SoilFRTIARTLRNYFLDRRRGSFELQLSALERRPPLPPDLLAAG
Ga0316627_10201556423300033482SoilFRTITRTLRNYFLDRKLGRFGVRVSALERRPPLPPDLRGAG
Ga0370503_0085647_915_10463300034196Untreated Peat SoilMAFRTITRTLRNYFLDRKQGALPLRISALERRPPLPPDLRGAG


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