Metagenome / Metatranscriptome Family F046057

Basic Information
Family ID	F046057
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	40 residues
Representative Sequence	SQSFGPSAIVSGSAYLLLRLSALECLTSLADGLTYYALC
Number of Associated Samples	138
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	7.89 %
% of genes near scaffold ends (potentially truncated)	92.76 %
% of genes from short scaffolds (< 2000 bps)	88.82 %
Associated GOLD sequencing projects	138
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (79.605 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.421 % of family members)
Environment Ontology (ENVO)	Unclassified (19.079 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.447 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.76% β-sheet: 0.00% Coil/Unstructured: 52.24%
Feature Viewer

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Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF13495	Phage_int_SAM_4	17.11
PF00078	RVT_1	4.61
PF14319	Zn_Tnp_IS91	4.61
PF00665	rve	1.32
PF08388	GIIM	1.32
PF00589	Phage_integrase	1.32
PF03938	OmpH	1.32
PF07394	DUF1501	0.66
PF10431	ClpB_D2-small	0.66
PF01872	RibD_C	0.66
PF13683	rve_3	0.66
PF00037	Fer4	0.66
PF13546	DDE_5	0.66
PF00872	Transposase_mut	0.66
PF13180	PDZ_2	0.66
PF03050	DDE_Tnp_IS66	0.66
PF00440	TetR_N	0.66
PF13610	DDE_Tnp_IS240	0.66
PF00293	NUDIX	0.66
PF01520	Amidase_3	0.66
PF13561	adh_short_C2	0.66
PF14526	Cass2	0.66
PF10861	DUF2784	0.66
PF03401	TctC	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG2801	Transposase InsO and inactivated derivatives	Mobilome: prophages, transposons [X]	1.32
COG2825	Periplasmic chaperone for outer membrane proteins, Skp family	Cell wall/membrane/envelope biogenesis [M]	1.32
COG2826	Transposase and inactivated derivatives, IS30 family	Mobilome: prophages, transposons [X]	1.32
COG3316	Transposase (or an inactivated derivative), DDE domain	Mobilome: prophages, transposons [X]	1.32
COG4584	Transposase	Mobilome: prophages, transposons [X]	1.32
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.66
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.66
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.66
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.66
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.66
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.61 %
Unclassified	root	N/A	20.39 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	58.55 %
Unclassified	root	N/A	20.39 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	7.24 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.32 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.66 %
Elusimicrobia	phylum	All Organisms → cellular organisms → Bacteria → Elusimicrobia	0.66 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	42.76 %
Unclassified	root	N/A	20.39 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.92 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.32 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.66 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.66 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	34.21 %
Unclassified	root	N/A	20.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.92 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.97 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	1.32 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.32 %
Magnetococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales	0.66 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.66 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.66 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	28.29 %
Unclassified	root	N/A	20.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.92 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.32 %
Pectobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae	1.32 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.32 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Magnetococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae	0.66 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.66 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.66 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.66 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	0.66 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	28.29 %
Unclassified	root	N/A	20.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.92 %
Dickeya	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Dickeya	1.32 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.32 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.66 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	0.66 %
Nitrospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum	0.66 %
Desulfallaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae	0.66 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.66 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.66 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	0.66 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.66 %
Magnetococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.92 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	3.29 %
Dickeya chrysanthemi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Dickeya → Dickeya chrysanthemi	1.32 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.32 %
Desulfoscipio	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfoscipio	0.66 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.66 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	0.66 %
unclassified Paraburkholderia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia	0.66 %
Magnetococcus marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus	0.66 %
Bradyrhizobium retamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	0.66 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.66 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.66 %
Mesorhizobium tianshanense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense	0.66 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.66 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	20.39 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.92 %
Bradyrhizobium huanghuaihaiense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	3.29 %
Dickeya chrysanthemi Ech1591	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Dickeya → Dickeya chrysanthemi → Dickeya chrysanthemi Ech1591	1.32 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.32 %
Paraburkholderia sp. BL23I1N1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	0.66 %
Azospirillum sp. OGB3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. OGB3	0.66 %
Desulfoscipio geothermicus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfoscipio → Desulfoscipio geothermicus	0.66 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.66 %
Magnetococcus marinus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus	0.66 %
Bradyrhizobium retamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	0.66 %
Rhodopila globiformis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	0.66 %
Nitrospirillum amazonense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	0.66 %
Mesorhizobium tianshanense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense	0.66 %
Rhizobiales bacterium GAS113	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	0.66 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.66 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.66 %
Elusimicrobia	class	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459023\|GZGNO2B01D41WK	Not Available	501	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1071337	Not Available	527	Open in IMG/M
3300000580\|AF_2010_repII_A01DRAFT_1074192	Not Available	516	Open in IMG/M
3300001179\|JGI12660J13575_100016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Magnetococcales → Magnetococcaceae → Magnetococcus → Magnetococcus marinus	3247	Open in IMG/M
3300002907\|JGI25613J43889_10012649	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2346	Open in IMG/M
3300002908\|JGI25382J43887_10279764	All Organisms → cellular organisms → Bacteria → Proteobacteria	748	Open in IMG/M
3300002914\|JGI25617J43924_10112288	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300003352\|JGI26345J50200_1002972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1590	Open in IMG/M
3300003505\|JGIcombinedJ51221_10054824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1523	Open in IMG/M
3300005186\|Ga0066676_10389266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	938	Open in IMG/M
3300005332\|Ga0066388_102484528	Not Available	941	Open in IMG/M
3300005454\|Ga0066687_10229227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1027	Open in IMG/M
3300005466\|Ga0070685_11177568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Dickeya → Dickeya chrysanthemi → Dickeya chrysanthemi Ech1591	582	Open in IMG/M
3300005468\|Ga0070707_101328085	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	685	Open in IMG/M
3300005557\|Ga0066704_10748300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	611	Open in IMG/M
3300005564\|Ga0070664_101691394	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300005575\|Ga0066702_10991888	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	503	Open in IMG/M
3300005578\|Ga0068854_100165277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1717	Open in IMG/M
3300005719\|Ga0068861_102402581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	530	Open in IMG/M
3300005764\|Ga0066903_107128989	Not Available	579	Open in IMG/M
3300005832\|Ga0074469_11228626	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300005843\|Ga0068860_101177654	All Organisms → cellular organisms → Bacteria → Proteobacteria	786	Open in IMG/M
3300006017\|Ga0058708_1000211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	596	Open in IMG/M
3300006028\|Ga0070717_10555772	Not Available	1039	Open in IMG/M
3300006041\|Ga0075023_100342350	Not Available	630	Open in IMG/M
3300006050\|Ga0075028_100760673	Not Available	587	Open in IMG/M
3300006163\|Ga0070715_10024216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2388	Open in IMG/M
3300006797\|Ga0066659_11368900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	591	Open in IMG/M
3300006804\|Ga0079221_10094600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. OGB3	1453	Open in IMG/M
3300006804\|Ga0079221_10491833	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300006846\|Ga0075430_100017654	All Organisms → cellular organisms → Bacteria → Proteobacteria	6076	Open in IMG/M
3300006854\|Ga0075425_102142733	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300006893\|Ga0073928_10141994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	1948	Open in IMG/M
3300006903\|Ga0075426_10508381	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300006914\|Ga0075436_100244003	Not Available	1278	Open in IMG/M
3300006914\|Ga0075436_101386624	Not Available	533	Open in IMG/M
3300007521\|Ga0105044_10889481	Not Available	694	Open in IMG/M
3300007788\|Ga0099795_10020971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Nitrospirillum → Nitrospirillum amazonense	2136	Open in IMG/M
3300009038\|Ga0099829_10481359	All Organisms → cellular organisms → Bacteria	1030	Open in IMG/M
3300009090\|Ga0099827_10718350	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300009092\|Ga0105250_10333741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	661	Open in IMG/M
3300009101\|Ga0105247_10139118	Not Available	1589	Open in IMG/M
3300009143\|Ga0099792_10309499	All Organisms → cellular organisms → Bacteria	941	Open in IMG/M
3300009627\|Ga0116109_1105951	All Organisms → cellular organisms → Bacteria → Proteobacteria	604	Open in IMG/M
3300009641\|Ga0116120_1014981	All Organisms → cellular organisms → Bacteria	2953	Open in IMG/M
3300009644\|Ga0116121_1023799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Desulfallaceae → Desulfoscipio → Desulfoscipio geothermicus	1955	Open in IMG/M
3300010046\|Ga0126384_11653924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	604	Open in IMG/M
3300010048\|Ga0126373_12521718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300010154\|Ga0127503_10600676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
3300010322\|Ga0134084_10396749	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300010361\|Ga0126378_10444125	Not Available	1411	Open in IMG/M
3300010361\|Ga0126378_11320960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila → Rhodopila globiformis	816	Open in IMG/M
3300010362\|Ga0126377_11536570	Not Available	740	Open in IMG/M
3300010373\|Ga0134128_10826912	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300010399\|Ga0134127_12808614	Not Available	566	Open in IMG/M
3300010401\|Ga0134121_12485633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	560	Open in IMG/M
3300010408\|Ga0137020_100288	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1093	Open in IMG/M
3300011075\|Ga0138555_1062794	Not Available	503	Open in IMG/M
3300011430\|Ga0137423_1261365	All Organisms → cellular organisms → Bacteria → Proteobacteria	511	Open in IMG/M
3300012189\|Ga0137388_12018434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	505	Open in IMG/M
3300012203\|Ga0137399_11589980	Not Available	542	Open in IMG/M
3300012205\|Ga0137362_11265209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	623	Open in IMG/M
3300012205\|Ga0137362_11771671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Pectobacteriaceae → Dickeya → Dickeya chrysanthemi → Dickeya chrysanthemi Ech1591	504	Open in IMG/M
3300012357\|Ga0137384_11192819	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300012359\|Ga0137385_10650798	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300012507\|Ga0157342_1072857	Not Available	526	Open in IMG/M
3300012582\|Ga0137358_10812775	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	620	Open in IMG/M
3300012917\|Ga0137395_11112656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300012923\|Ga0137359_11665571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	525	Open in IMG/M
3300013307\|Ga0157372_11898790	All Organisms → cellular organisms → Bacteria → Proteobacteria	685	Open in IMG/M
3300014325\|Ga0163163_11138379	All Organisms → cellular organisms → Bacteria → Proteobacteria	843	Open in IMG/M
3300015356\|Ga0134073_10253520	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	609	Open in IMG/M
3300015374\|Ga0132255_106332076	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300016270\|Ga0182036_10065321	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2350	Open in IMG/M
3300016404\|Ga0182037_11482368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
3300017933\|Ga0187801_10062022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1374	Open in IMG/M
3300018006\|Ga0187804_10274124	Not Available	731	Open in IMG/M
3300018031\|Ga0184634_10026993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2238	Open in IMG/M
3300020150\|Ga0187768_1150613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	537	Open in IMG/M
3300020579\|Ga0210407_10060375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2838	Open in IMG/M
3300021073\|Ga0210378_10078024	All Organisms → cellular organisms → Bacteria → Proteobacteria	1297	Open in IMG/M
3300021171\|Ga0210405_11166109	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300021286\|Ga0179583_1059809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium tianshanense	546	Open in IMG/M
3300021307\|Ga0179585_1074506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	630	Open in IMG/M
3300021401\|Ga0210393_10982873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	684	Open in IMG/M
3300021432\|Ga0210384_11611654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	554	Open in IMG/M
3300021474\|Ga0210390_10063236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3051	Open in IMG/M
3300022506\|Ga0242648_1022238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → unclassified Paraburkholderia → Paraburkholderia sp. BL23I1N1	822	Open in IMG/M
3300022522\|Ga0242659_1062985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	678	Open in IMG/M
3300022726\|Ga0242654_10450342	Not Available	502	Open in IMG/M
3300024330\|Ga0137417_1499553	Not Available	1769	Open in IMG/M
3300024516\|Ga0209980_10023972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	3128	Open in IMG/M
3300025706\|Ga0209507_1211946	All Organisms → cellular organisms → Bacteria → Elusimicrobia → Elusimicrobia	507	Open in IMG/M
3300025895\|Ga0209567_10622340	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300025912\|Ga0207707_10072372	Not Available	3005	Open in IMG/M
3300025915\|Ga0207693_10259532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1363	Open in IMG/M
3300025928\|Ga0207700_11645636	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	567	Open in IMG/M
3300025929\|Ga0207664_10343382	Not Available	1320	Open in IMG/M
3300026026\|Ga0210129_1023735	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300026354\|Ga0257180_1002106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1835	Open in IMG/M
3300026833\|Ga0207728_101865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS113	2411	Open in IMG/M
3300027063\|Ga0207762_1008436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1929	Open in IMG/M
3300027096\|Ga0208099_1001640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2538	Open in IMG/M
3300027266\|Ga0209215_1007023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	1326	Open in IMG/M
3300027548\|Ga0209523_1010610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1696	Open in IMG/M
3300027633\|Ga0208988_1175437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	506	Open in IMG/M
3300027678\|Ga0209011_1054467	All Organisms → cellular organisms → Bacteria → Proteobacteria	1217	Open in IMG/M
3300027765\|Ga0209073_10500539	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	512	Open in IMG/M
3300027783\|Ga0209448_10047537	Not Available	1444	Open in IMG/M
(restricted) 3300027868\|Ga0255053_10117221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1275	Open in IMG/M
3300027911\|Ga0209698_11331403	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300028779\|Ga0302266_10204203	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300028802\|Ga0307503_10694514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	571	Open in IMG/M
3300028906\|Ga0308309_11577267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	559	Open in IMG/M
3300029908\|Ga0311341_10672851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300030947\|Ga0075390_11218411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	606	Open in IMG/M
3300030969\|Ga0075394_12104363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	547	Open in IMG/M
3300031233\|Ga0302307_10638871	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300031446\|Ga0170820_10500529	Not Available	669	Open in IMG/M
3300031543\|Ga0318516_10163920	Not Available	1278	Open in IMG/M
3300031543\|Ga0318516_10748229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	553	Open in IMG/M
3300031561\|Ga0318528_10224502	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1006	Open in IMG/M
3300031561\|Ga0318528_10306427	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300031573\|Ga0310915_10972628	Not Available	593	Open in IMG/M
3300031677\|Ga0307480_1020682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	530	Open in IMG/M
3300031720\|Ga0307469_10073468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2279	Open in IMG/M
3300031753\|Ga0307477_10500942	Not Available	825	Open in IMG/M
3300031753\|Ga0307477_11048985	All Organisms → cellular organisms → Bacteria → Proteobacteria	533	Open in IMG/M
3300031781\|Ga0318547_10649287	Not Available	655	Open in IMG/M
3300031799\|Ga0318565_10353779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	712	Open in IMG/M
3300031832\|Ga0318499_10326688	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300031854\|Ga0310904_10112396	All Organisms → cellular organisms → Bacteria → Proteobacteria	1519	Open in IMG/M
3300031879\|Ga0306919_11196056	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	577	Open in IMG/M
3300031896\|Ga0318551_10924073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	510	Open in IMG/M
3300031910\|Ga0306923_10062976	All Organisms → cellular organisms → Bacteria	4121	Open in IMG/M
3300031910\|Ga0306923_11911548	Not Available	605	Open in IMG/M
3300031910\|Ga0306923_11936413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	600	Open in IMG/M
3300031946\|Ga0310910_11258590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	573	Open in IMG/M
3300032009\|Ga0318563_10531701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300032055\|Ga0318575_10058964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1780	Open in IMG/M
3300032055\|Ga0318575_10687452	All Organisms → cellular organisms → Bacteria → Proteobacteria	517	Open in IMG/M
3300032059\|Ga0318533_10352685	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1071	Open in IMG/M
3300032063\|Ga0318504_10177279	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	989	Open in IMG/M
3300032063\|Ga0318504_10276051	All Organisms → cellular organisms → Bacteria → Proteobacteria	793	Open in IMG/M
3300032076\|Ga0306924_11680602	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300032076\|Ga0306924_12412897	Not Available	530	Open in IMG/M
3300032156\|Ga0315295_10753417	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	980	Open in IMG/M
3300032261\|Ga0306920_100426824	All Organisms → cellular organisms → Bacteria → Proteobacteria	1970	Open in IMG/M
3300032261\|Ga0306920_100736876	All Organisms → cellular organisms → Bacteria	1451	Open in IMG/M
3300032955\|Ga0335076_11660934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium huanghuaihaiense	527	Open in IMG/M
3300033290\|Ga0318519_10119807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1439	Open in IMG/M
3300034114\|Ga0364938_000861	All Organisms → cellular organisms → Bacteria → Proteobacteria	3182	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	89.47%
Host-Associated	Host-Associated	9.87%
Engineered	Engineered	0.66%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.00%
Aquatic	Environmental → Aquatic	14.47%
Plants	Host-Associated → Plants	9.87%
Wastewater	Engineered → Wastewater	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	72.37%
Freshwater	Environmental → Aquatic → Freshwater	7.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.92%
Sediment	Environmental → Aquatic → Sediment	3.95%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.29%
Marine	Environmental → Aquatic → Marine	2.63%
Peat	Environmental → Terrestrial → Peat	1.97%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.66%
Floodplain	Environmental → Terrestrial → Floodplain	0.66%
Roots	Host-Associated → Plants → Roots	0.66%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.89%
Loam	Environmental → Terrestrial → Soil → Loam	13.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.26%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.95%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.66%
Lake	Environmental → Aquatic → Freshwater → Lake	0.66%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.66%
Ice	Environmental → Aquatic → Freshwater → Ice	0.66%
Oceanic	Environmental → Aquatic → Marine → Oceanic	0.66%
Inlet	Environmental → Aquatic → Marine → Inlet	0.66%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.66%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	0.66%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.66%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.66%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.26%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.63%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.97%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.97%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.32%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.66%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.66%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.66%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	0.66%
Sediment	Environmental → Aquatic → Marine → Oceanic → Sediment	0.66%
Unclassified	Environmental → Aquatic → Marine → Inlet → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.66%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	0.66%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.66%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.66%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.66%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	10.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.29%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.29%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.63%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.97%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.97%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.97%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.97%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.97%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.32%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.32%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.66%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.66%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.66%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	0.66%
Deep Subsurface	Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface	0.66%
Seawater	Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater	0.66%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.66%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.66%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.66%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.66%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.66%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.66%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.66%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.66%
Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Rhizosphere	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.66%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.66%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.66%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.66%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300001179	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006017	Rhizosphere microbial communities from Harvard Forest, USA - 6Rhizosphere_unsorted metaG	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009092	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009627	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_10	Environmental	Open in IMG/M
3300009641	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_150	Environmental	Open in IMG/M
3300009644	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010408	Microbial communities from soil contaminated with neutral mine drainage from mine ?rea in Canaa dos Carajas, Brazil - End of the channel, sample P5-2012	Environmental	Open in IMG/M
3300011075	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 36 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011430	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT600_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021286	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021307	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300022506	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-26-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300024516	Deep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR02 metaG (SPAdes)	Environmental	Open in IMG/M
3300025706	Active sludge microbial communities of municipal wastewater-treating anaerobic digesters from USA - AD_UKC028_MetaG (SPAdes)	Engineered	Open in IMG/M
3300025895	Pelagic marine sediment microbial communities from the LTER site Helgoland, North Sea, for post-phytoplankton bloom and carbon turnover studies - COGITO 998_met_12 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026026	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailB_D2 (SPAdes)	Environmental	Open in IMG/M
3300026354	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-B	Environmental	Open in IMG/M
3300026833	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 54 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027096	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF043 (SPAdes)	Environmental	Open in IMG/M
3300027266	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027633	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027678	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027868 (restricted)	Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_22	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028779	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E1_2	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029908	II_Bog_E1 coassembly	Environmental	Open in IMG/M
3300030947	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031677	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032156	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G14_0	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034114	Sediment microbial communities from East River floodplain, Colorado, United States - 9_s17	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F046057

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_03864440	2170459023	Grass Soil	SYSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIYYTLC
AF_2010_repII_A01DRAFT_10713371	3300000580	Forest Soil	PLLSFGPSITVPGSAYLLLHLSVLECLTSFADDVIHYARC*
AF_2010_repII_A01DRAFT_10741921	3300000580	Forest Soil	LPLLSFGPSITVPGSAYLLLHLSVLECLTSFADDVIHYARC*
JGI12660J13575_1000164	3300001179	Forest Soil	MSRQSYLPSQSFGPSATAPGSAYLLLRLSALECLTSLADGLAYYALC*
JGI25613J43889_100126491	3300002907	Grasslands Soil	PTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC*
JGI25382J43887_102797641	3300002908	Grasslands Soil	MSYSPLLSFGSSITVPGSAYLLLHLSVLECLTSFADDVIYYTLC*
JGI25617J43924_101122882	3300002914	Grasslands Soil	TCHSQSFGPSAIVPGSAYLLLRLSALECLTSFADVMDYYAVC*
JGI26345J50200_10029724	3300003352	Bog Forest Soil	MSCQSYLPSQSFGPSAIVPGSAYXLLRLSALECLTSLADGLAYYAVC*
JGIcombinedJ51221_100548241	3300003505	Forest Soil	VASPNRHSQSFGPSALVPGSAYLFLRLSALECLTSLADCLA*
Ga0066676_103892661	3300005186	Soil	TCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0066388_1024845281	3300005332	Tropical Forest Soil	MSYSLSFSFGPSTTVPGSAYPFLRLSALECLTSLADDMAHYALC*
Ga0066687_102292271	3300005454	Soil	TCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC*
Ga0070685_111775682	3300005466	Switchgrass Rhizosphere	LRLMAYWPPFSFGPSATVPGLAYPLLRLSDFGCLTSLADVMT*
Ga0070707_1013280851	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VASPTCHSQSFGPSAIVSGLAYLLLRLSALECLTSLADGLAYYALC*
Ga0066704_107483001	3300005557	Soil	VASPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0070664_1016913942	3300005564	Corn Rhizosphere	ASPTCRSRSFGPSVPVSGSAYLLLRLSALECLTSLADSRAYYALC*
Ga0066702_109918882	3300005575	Soil	GPSIIVPGLAYPLLRLSALECLTSLADCMTYFARC*
Ga0068854_1001652773	3300005578	Corn Rhizosphere	VASPSCHFQSFGPSVIVSGLAYPGLRLSALECLTSLADGVTYYAVC*
Ga0068861_1024025811	3300005719	Switchgrass Rhizosphere	QSFGPSAIVPGSAYPLLRLSALECLTSLADSMTYYAVC*
Ga0066903_1071289892	3300005764	Tropical Forest Soil	MSYWPPFSFGPSATVSGSTYLLLHLSVPECLTSLTDVMTYYAVC*
Ga0074469_112286261	3300005832	Sediment (Intertidal)	AFDGGDAGLAYLLLRLSALECLTSLADGMAYFALC*
Ga0068860_1011776542	3300005843	Switchgrass Rhizosphere	PSVIVSGLAYPGLRLSALECLTSLADGVTYYAVC*
Ga0058708_10002111	3300006017	Rhizosphere	SQSFGPSAIVPGSAYLLLRLSALECLTSLADGVAYYALC*
Ga0070717_105557722	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	SQSFGPSAIVPGSAYLLLRLSALECLTSFADVMTYYAVC*
Ga0075023_1003423502	3300006041	Watersheds	MSYSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIYYTLC*
Ga0075028_1007606731	3300006050	Watersheds	MSYLPLLSFGPSAPVSGSAYPLLRLSALECLISLADVMAYYALC*
Ga0070715_100242163	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	SQSFGPSAIVPGSAYPLLRLSALECLTSLADGLAYYAVC*
Ga0066659_113689001	3300006797	Soil	PTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0079221_100946001	3300006804	Agricultural Soil	PSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0079221_104918333	3300006804	Agricultural Soil	LPLSIVGPSVLVSGSAYLLLRLSALECLTSLADGRTYYALC*
Ga0075430_1000176541	3300006846	Populus Rhizosphere	DPLMDDSPTCRSPSFGPSAIVSGSAYLLLRLGLECLTSLADSMTYYALC*
Ga0075425_1021427331	3300006854	Populus Rhizosphere	LRVPFGPSIIVPGLAYLLLRLSALECLNSLADCMTY
Ga0073928_101419942	3300006893	Iron-Sulfur Acid Spring	MSSQSYLPSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC*
Ga0075426_105083811	3300006903	Populus Rhizosphere	GPSIIVPGLAYLLLRLSALECLNSLADCMTYYALC*
Ga0075436_1002440031	3300006914	Populus Rhizosphere	MSTRLSFSFGPSTTVPGSAYLLLHLSVLECLTSLADDMAYYALC*
Ga0075436_1013866241	3300006914	Populus Rhizosphere	VPFGPSIIVPGLAYRLLRLSVLECLTSLADCMTYFALC*
Ga0105044_108894811	3300007521	Freshwater	TQFRPSSAVPGSAYLELRLSALECLTSLADDTDYYGVC*
Ga0099795_100209711	3300007788	Vadose Zone Soil	SPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC*
Ga0099829_104813591	3300009038	Vadose Zone Soil	MSYSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVI
Ga0099827_107183501	3300009090	Vadose Zone Soil	LYSPCGVPFGPSITVPGSAYLLLRLSALECLNSFADCMTYFALC*
Ga0105250_103337411	3300009092	Switchgrass Rhizosphere	HSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC*
Ga0105247_101391182	3300009101	Switchgrass Rhizosphere	PSVIVSGLAYPGLRLSALECLTSRADGVTYYAVC*
Ga0099792_103094991	3300009143	Vadose Zone Soil	SQSFGPSAIVSGSAYLLLRLSALECLTSLADGLTYYALC*
Ga0116109_11059511	3300009627	Peatland	PTCRSQSFGPSAIVSGLAYLLLRLSAWSASISLADSMTHYALC*
Ga0116120_10149813	3300009641	Peatland	GVPFGPSIIVPSLAYLLLRLSALECLNSLADGMTYFALC*
Ga0116121_10237991	3300009644	Peatland	NVQLSFSFSPSFTVPGSAYLFLHLSALECLNSITDDMTYYGLC*
Ga0126384_116539241	3300010046	Tropical Forest Soil	ICHSHSFGPSAIVSGSAYLLLRLSTLECLTSFADGLAYYALC*
Ga0126373_125217181	3300010048	Tropical Forest Soil	SFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0127503_106006761	3300010154	Soil	FGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0134084_103967491	3300010322	Grasslands Soil	FGPSVIPGLAYLLLRLSALECLTSFADVMTYSALC*
Ga0126378_104441251	3300010361	Tropical Forest Soil	VASPTCHSHSFGPSAIVSGLAYLLLRLSTVECLTSLADGLAYYALC*
Ga0126378_113209601	3300010361	Tropical Forest Soil	SRSFGPSVIVSGSAYLLLRLSVLECLTSLADSLTYYALC*
Ga0126377_115365701	3300010362	Tropical Forest Soil	PTCHSHSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC*
Ga0134128_108269122	3300010373	Terrestrial Soil	PSAIVPGSAYLLLRLSALECLTSFADVMAYYAVC*
Ga0134127_128086141	3300010399	Terrestrial Soil	RPFGPSVLVSGSAYLLLRLSALECLTSLADGLTYYALC*
Ga0134121_124856331	3300010401	Terrestrial Soil	PTCHSQSFGPSAIVSGLAYPGLRLSALECLTSRADGVTYYAVC*
Ga0137020_1002883	3300010408	Soil	APPRPSTIVPGSAYPLLRLSALECLTSLADGVAYYAVC*
Ga0138555_10627941	3300011075	Peatlands Soil	SLGPSVTVPGSAYLFLHLSVSECLTNLADDMTYYALC*
Ga0137423_12613651	3300011430	Soil	GPSYLVSGSAYPLLRLSALECLTSLTDVRSYYALC*
Ga0137388_120184341	3300012189	Vadose Zone Soil	SMSYSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIYYTLC*
Ga0137399_115899802	3300012203	Vadose Zone Soil	MSYSPLLSFGSSITVPGSAYLLLHLSVLECLASFADDVIYYTLC*
Ga0137362_112652091	3300012205	Vadose Zone Soil	PSPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLTYYALC*
Ga0137362_117716711	3300012205	Vadose Zone Soil	VASPTCHSQSFGPSALVSGSAYLLLRLLALDCLTSLADGWTYYALF*
Ga0137384_111928191	3300012357	Vadose Zone Soil	LLFGPSDTVPGSAYLLLHLSALECLTSFADDMTYYALC*
Ga0137385_106507982	3300012359	Vadose Zone Soil	YSPCGVPFGPSIIVPGLAYLLLRLSALERLTSLADCITYFALC*
Ga0157342_10728572	3300012507	Arabidopsis Rhizosphere	SRSFGPSVLVSGSAYLLLRLSALECLTSLADGRTYYALC*
Ga0137358_108127751	3300012582	Vadose Zone Soil	ASPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0137395_111126561	3300012917	Vadose Zone Soil	VANPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC*
Ga0137359_116655711	3300012923	Vadose Zone Soil	PSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC*
Ga0157372_118987901	3300013307	Corn Rhizosphere	CHFRSFGPSVIVSGSAYPGLRLSALECLTSRADGVTYYAVC*
Ga0163163_111383791	3300014325	Switchgrass Rhizosphere	GPSVIVSGLAYPGLRLSALECLTSRADSLTYYAVC*
Ga0134073_102535201	3300015356	Grasslands Soil	PFGPSVFIPGLAYLLLRLSALECLTSFADVMTYSALC*
Ga0132255_1063320761	3300015374	Arabidopsis Rhizosphere	PICHFQSFGPSVIVPGSAYPLLRLSALECLTSLTDSITYYALC*
Ga0182036_100653213	3300016270	Soil	SFGPSAIVSGSAYLLLRLSALECLTSLADGLTYYVCFGVED
Ga0182037_114823681	3300016404	Soil	FGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0187801_100620222	3300017933	Freshwater Sediment	FGPSIIVPSSAYLLLRLSALECLTSLADCMTYLALC
Ga0187804_102741241	3300018006	Freshwater Sediment	MSYSPLLSFGSSITVPGSAYLLLHLSVLECLTSFADDVIYYTLC
Ga0184634_100269931	3300018031	Groundwater Sediment	SPTCRSQSFGPSAIVSGSTYPLLRLSALECLNSLADSLTYYAVC
Ga0187768_11506131	3300020150	Tropical Peatland	HSQSFRPSALVPGSAYLFLRLSALECLTSLADCLA
Ga0210407_100603755	3300020579	Soil	SPTCRSQSFGPSVIVSGSAYLLLRLSALECLTSLADGLTYYTLC
Ga0210378_100780241	3300021073	Groundwater Sediment	SQSLRRGTSHSSSFGPSVLVPGSAYLLLRLSALECLTSFADVRTYYALC
Ga0210405_111661091	3300021171	Soil	RSMSYSPLLSFGSSITVPGSAYLLLHLSVLECLTSFADVMIYYTLC
Ga0179583_10598091	3300021286	Vadose Zone Soil	SPTCHSQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0179585_10745061	3300021307	Vadose Zone Soil	PACHSQSFGPSAIVSGLAYLLLRLSALECLTSLADGLT
Ga0210393_109828731	3300021401	Soil	RSRSFGPSVLVSGSAYLLLRLSALECLTSLADDRAYYALC
Ga0210384_116116541	3300021432	Soil	SFGPSAIVPGSAYLLLRLSALECLTSFADVMAYYAVC
Ga0210390_100632363	3300021474	Soil	HSQSFGPSAIVPGSAYPLLRLSALECLTSLADGVAYYAVC
Ga0242648_10222381	3300022506	Soil	SFGPSAIVPGSAYPLLRLSALECLTSLADGLAYYAVC
Ga0242659_10629851	3300022522	Soil	LLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIYYTLC
Ga0242654_104503421	3300022726	Soil	LPLLSFGPSTIVSGSAYLLLRLSTLECLTSLADDMA
Ga0137417_14995531	3300024330	Vadose Zone Soil	MSYSPLLSFGSSITVPGSAYLLLHLSVLECLASFADDVIYYTLC
Ga0209980_100239721	3300024516	Deep Subsurface	CHSRSFGPSAIVPGSAYPLLRLSALECLTSLADGMTYYALC
Ga0209507_12119461	3300025706	Anaerobic Digestor Sludge	RRFGPSIIVTGSAYLFPRLSALRCLISLTDDMIYYGLG
Ga0209567_106223401	3300025895	Pelagic Marine	SPTCHSQSFGPSSIVTGSAYLLLRLSASECLNSLADSMGYYALC
Ga0207707_100723724	3300025912	Corn Rhizosphere	GPSITVPGLAYLLTPSFDVECLTSLADCVTYYALC
Ga0207693_102595321	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	SPTCHSQSFGPSAIVPGSAYLLLRLSALECLTSFADVMAYYAVC
Ga0207700_116456361	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	GPSALVPGSAYLLLRLSALECLTSLADVLAYYAVC
Ga0207664_103433822	3300025929	Agricultural Soil	SQSFGPSALVPGSAYLLLRLSALECLTSLADVLAYYAVC
Ga0210129_10237351	3300026026	Natural And Restored Wetlands	SNAFSLLVSGSAYLLLCLSALECLTCLACHKTYYAFC
Ga0257180_10021061	3300026354	Soil	SFGPSALVPGSAYLLLRLSALECLTSLADVLAYYAVC
Ga0207728_1018653	3300026833	Tropical Forest Soil	SFGPLAIVPGSAYLLLRLSALECLTSLADDLAYYALC
Ga0207762_10084361	3300027063	Tropical Forest Soil	CRSHSFGPLAIVPGSAYLLLRLSALECLTSLADDLAYYALC
Ga0208099_10016401	3300027096	Forest Soil	FGPSIIVPGVAYLFLRLSALECLNSPADCMTYLALC
Ga0209215_10070233	3300027266	Forest Soil	FGPSALVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0209523_10106103	3300027548	Forest Soil	CHSQSFGPSALVPGSAYPLLHLSALECLTSLADGLAYYAVC
Ga0208988_11754371	3300027633	Forest Soil	PICHSQSFGPSVIVPGSAYLLLRLSALECLTSLADGLAYYAVC
Ga0209011_10544672	3300027678	Forest Soil	FGPWAIVSGSAYLLLHLSALECLTSLADSLTYYAFC
Ga0209073_105005391	3300027765	Agricultural Soil	LYSPCGVPFGPSITVPGSAYLFLRLSALECLNSFADCLTYFALC
Ga0209448_100475372	3300027783	Bog Forest Soil	GPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC
(restricted) Ga0255053_101172211	3300027868	Seawater	GPSTLVPGLAYLLLRLSALECLTSLTDGMAYYALC
Ga0209698_113314032	3300027911	Watersheds	YSPCGVPFGPSITVPGLAYRLLRLSALECLNILADGMTYFALC
Ga0302266_102042033	3300028779	Bog	LPFGPSSTVPGSAYLLLRLSALECLNSLADDMNYFARC
Ga0307503_106945142	3300028802	Soil	FSLEPSVLVSGPAYPLLRLSAVECLTSLADFRTYYALC
Ga0308309_115772671	3300028906	Soil	SPTCRSQSFGPSATVPGSAYLLLRLSALECLTSLADGLAYYALC
Ga0311341_106728511	3300029908	Bog	SQSFGPSALVPGSAYLFLRLSALECLNSLADCLAYYALC
Ga0075390_112184111	3300030947	Soil	PTCHSQSFGPSAIVPGSAYPLLRLSALECLTSLADGLAYYAVC
Ga0075394_121043632	3300030969	Soil	PTCHSQSFGPSAIVSGLAYLLLRFSALECLTSLADGLT
Ga0302307_106388711	3300031233	Palsa	PFGPSIIVPGLAYLFLHLSALECLIILGDCMTYFALC
Ga0170820_105005291	3300031446	Forest Soil	YSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIYYTLC
Ga0318516_101639202	3300031543	Soil	GPLAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0318516_107482291	3300031543	Soil	GPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0318528_102245021	3300031561	Soil	SHSQSFGPSAIVSGSAYLLLRLSAVECLTSLADSLT
Ga0318528_103064271	3300031561	Soil	SPFGVPFGPSIPVPGSAYPLLHLSVLECLTNLADVRIYFALC
Ga0310915_109726282	3300031573	Soil	MSYSPLLSFGSSITVPGSTYLLLHLSVLECLTSFADDVIY
Ga0307480_10206821	3300031677	Hardwood Forest Soil	SQSFGPSAIVSGSAYLVLRLSAVECLTSLADATAYYAVC
Ga0307469_100734681	3300031720	Hardwood Forest Soil	QSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAFC
Ga0307477_105009422	3300031753	Hardwood Forest Soil	SFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALS
Ga0307477_110489851	3300031753	Hardwood Forest Soil	RSRSFGPSVLVSGLTYLLLRLSALECLNSLADGWT
Ga0318547_106492872	3300031781	Soil	SQSFGPSAIVSGSAYPLLRLSALECLTSLADGLAYYAVC
Ga0318565_103537791	3300031799	Soil	CHSPSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC
Ga0318499_103266881	3300031832	Soil	YWPPFSFGPSATVSGSTYLLLHLSVPECLTSLTDVMTYYAVC
Ga0310904_101123962	3300031854	Soil	CHFQSFGPSVIVSGLAYPGLRLSALECLTSRADGLTYYAVC
Ga0306919_111960561	3300031879	Soil	HSQSFGPSAIVSGLAYLLLRLSALECLTSLADGLAYYAVC
Ga0318551_109240732	3300031896	Soil	NPTCLSQSFGPSAIVSSSAYLLLRLSALECLTSLADGLAYYALC
Ga0306923_1006297610	3300031910	Soil	TCHSQSFGPSAIVSGLAYLLLRPSALECLTSLADGLAYYAVC
Ga0306923_119115481	3300031910	Soil	MSYWPLLSFGPSATVPARPIRCPRLSALECLTSLADDMTYY
Ga0306923_119364131	3300031910	Soil	ASPTCHSHSFGPSALVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0310910_112585901	3300031946	Soil	SPTCHSQSFGPSAIVSGLAYLLLRLSALECLTSLADGLAYYAVC
Ga0318563_105317012	3300032009	Soil	SHSFGPSAIVSGSAYLLLRLSALECLTSLADGLTYYVCFGVED
Ga0318575_100589641	3300032055	Soil	SHSFGPSAIVSDLAYPLLRLSALECLTSFADSMTYYALC
Ga0318575_106874521	3300032055	Soil	QSFGPSVLVSGSTYLLLRLSALECLTSLADGLTYYALC
Ga0318533_103526851	3300032059	Soil	PTHLSFSFGPSATVPGSAYPFLRLSALECLTSFADGVTYYALC
Ga0318504_101772791	3300032063	Soil	ASPTCHSPSFGPSAIVSSSAYLLLRLSALECLTSLADGLAYYALC
Ga0318504_102760512	3300032063	Soil	LCLSHSFGPSAIVSDLAYPLLRLSALECLTSFADSMTYYALC
Ga0306924_116806021	3300032076	Soil	GPSIPVTGSAYLFLRLSALECLTSLTDDMAYYALC
Ga0306924_124128971	3300032076	Soil	HSQSFGPSTLVPGSAYLFLRLSALECLISLADCLA
Ga0315295_107534171	3300032156	Sediment	HSQSFGPSSVAGGVAYPLLRLSALQCLTSFADDTDYYALC
Ga0306920_1004268241	3300032261	Soil	ANPTCLFQSFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0306920_1007368761	3300032261	Soil	FGPSAIVSGSAYLLLRLSALECLTSLADGLAYYAVC
Ga0335076_116609341	3300032955	Soil	SRSFGPSVLVSGSTYLLLRLSALECLTSLADGMTYYALC
Ga0318519_101198073	3300033290	Soil	SFGPSAIVSGSAYLLLRLSALECLTSLADGLAYYALC
Ga0364938_000861_1_114	3300034114	Sediment	SFGPSAIVTGSAYLLLRLSASECLTSFADDMTYYALC

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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