Metagenome Family F046037

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F046037
Family Type	Metagenome
Number of Sequences	152
Average Sequence Length	49 residues
Representative Sequence	PVKTVALGGVVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV
Number of Associated Samples	120
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.97 %
% of genes near scaffold ends (potentially truncated)	97.37 %
% of genes from short scaffolds (< 2000 bps)	88.82 %
Associated GOLD sequencing projects	112
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.342 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (14.474 % of family members)
Environment Ontology (ENVO)	Unclassified (30.921 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.053 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.56% β-sheet: 0.00% Coil/Unstructured: 47.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF01738	DLH	8.55
PF01979	Amidohydro_1	5.92
PF01717	Meth_synt_2	4.61
PF00296	Bac_luciferase	3.95
PF04909	Amidohydro_2	3.29
PF13505	OMP_b-brl	3.29
PF01545	Cation_efflux	3.29
PF00903	Glyoxalase	1.97
PF04072	LCM	1.97
PF02653	BPD_transp_2	1.32
PF00723	Glyco_hydro_15	1.32
PF08402	TOBE_2	1.32
PF02776	TPP_enzyme_N	1.32
PF13620	CarboxypepD_reg	1.32
PF07685	GATase_3	0.66
PF12833	HTH_18	0.66
PF13193	AMP-binding_C	0.66
PF07690	MFS_1	0.66
PF13240	zinc_ribbon_2	0.66
PF08241	Methyltransf_11	0.66
PF13683	rve_3	0.66
PF12681	Glyoxalase_2	0.66
PF13468	Glyoxalase_3	0.66
PF16916	ZT_dimer	0.66
PF00005	ABC_tran	0.66
PF01323	DSBA	0.66
PF00211	Guanylate_cyc	0.66
PF04191	PEMT	0.66
PF07715	Plug	0.66
PF07978	NIPSNAP	0.66
PF13594	Obsolete Pfam Family	0.66
PF02566	OsmC	0.66
PF00596	Aldolase_II	0.66
PF00578	AhpC-TSA	0.66
PF12695	Abhydrolase_5	0.66
PF08281	Sigma70_r4_2	0.66
PF01329	Pterin_4a	0.66
PF07603	DUF1566	0.66
PF00072	Response_reg	0.66
PF12847	Methyltransf_18	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	4.61
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	3.95
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	3.29
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	3.29
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	3.29
COG3315	O-Methyltransferase involved in polyketide biosynthesis	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.97
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	1.32
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.66
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.66
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.66
COG2154	Pterin-4a-carbinolamine dehydratase	Coenzyme transport and metabolism [H]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.34 %
Unclassified	root	N/A	25.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.34 %
Unclassified	root	N/A	25.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.34 %
Unclassified	root	N/A	25.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	19.08 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	15.13 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.32 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15.13 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	15.13 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	1.32 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.32 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.32 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	15.13 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.63 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.63 %
unclassified Gemmatimonadetes	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes	1.32 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.32 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.32 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	15.13 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.97 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.32 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.32 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.66 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.66 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	15.13 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.97 %
Hoeflea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea	1.32 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.32 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.66 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	15.13 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.97 %
unclassified Hoeflea	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea	1.32 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.32 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.66 %
Leucobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.66 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	15.13 %
Rhodospirillales bacterium URHD0017	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	1.97 %
Hoeflea sp. WL0058	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1.32 %
Gemmatimonadetes bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	1.32 %
Leucobacter chromiiresistens	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → Leucobacter chromiiresistens	0.66 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.66 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.66 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.66 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.66 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.66 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_11929504	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300000955\|JGI1027J12803_103080541	All Organisms → cellular organisms → Bacteria	1545	Open in IMG/M
3300002562\|JGI25382J37095_10127495	All Organisms → cellular organisms → Bacteria	859	Open in IMG/M
3300004025\|Ga0055433_10013656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1317	Open in IMG/M
3300004114\|Ga0062593_101942821	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300004157\|Ga0062590_102556354	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300004633\|Ga0066395_10717897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Leucobacter → Leucobacter chromiiresistens	594	Open in IMG/M
3300005174\|Ga0066680_10803819	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	566	Open in IMG/M
3300005332\|Ga0066388_103154202	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300005332\|Ga0066388_104975256	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300005336\|Ga0070680_101433656	All Organisms → cellular organisms → Bacteria	598	Open in IMG/M
3300005354\|Ga0070675_100331673	All Organisms → cellular organisms → Bacteria	1346	Open in IMG/M
3300005444\|Ga0070694_100618827	All Organisms → cellular organisms → Bacteria	874	Open in IMG/M
3300005445\|Ga0070708_100996969	All Organisms → cellular organisms → Bacteria	785	Open in IMG/M
3300005467\|Ga0070706_101860387	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300005467\|Ga0070706_101969181	All Organisms → cellular organisms → Bacteria	529	Open in IMG/M
3300005468\|Ga0070707_100519629	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1153	Open in IMG/M
3300005468\|Ga0070707_102016628	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300005526\|Ga0073909_10652501	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	524	Open in IMG/M
3300005557\|Ga0066704_10493790	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005569\|Ga0066705_10062398	All Organisms → cellular organisms → Bacteria	2126	Open in IMG/M
3300005713\|Ga0066905_100386101	All Organisms → cellular organisms → Bacteria	1131	Open in IMG/M
3300005713\|Ga0066905_101443311	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	624	Open in IMG/M
3300005713\|Ga0066905_102102001	Not Available	525	Open in IMG/M
3300005764\|Ga0066903_100797362	All Organisms → cellular organisms → Bacteria	1688	Open in IMG/M
3300005764\|Ga0066903_100929567	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1578	Open in IMG/M
3300005844\|Ga0068862_102347885	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300006034\|Ga0066656_11124831	Not Available	505	Open in IMG/M
3300006049\|Ga0075417_10016942	All Organisms → cellular organisms → Bacteria	2843	Open in IMG/M
3300006163\|Ga0070715_10671334	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300006175\|Ga0070712_101283555	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300006797\|Ga0066659_10457789	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300006846\|Ga0075430_101141588	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300006854\|Ga0075425_100433613	All Organisms → cellular organisms → Bacteria	1513	Open in IMG/M
3300006903\|Ga0075426_10252025	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300006904\|Ga0075424_101370248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	752	Open in IMG/M
3300006904\|Ga0075424_101510997	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300006904\|Ga0075424_102221994	Not Available	577	Open in IMG/M
3300006954\|Ga0079219_12411840	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300007255\|Ga0099791_10000737	All Organisms → cellular organisms → Bacteria	12253	Open in IMG/M
3300007255\|Ga0099791_10402659	Not Available	659	Open in IMG/M
3300007255\|Ga0099791_10548579	Not Available	563	Open in IMG/M
3300009012\|Ga0066710_100109600	All Organisms → cellular organisms → Bacteria	3724	Open in IMG/M
3300009038\|Ga0099829_11323236	Not Available	596	Open in IMG/M
3300009090\|Ga0099827_10111597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2189	Open in IMG/M
3300009792\|Ga0126374_11812699	Not Available	511	Open in IMG/M
3300010043\|Ga0126380_10191187	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1360	Open in IMG/M
3300010043\|Ga0126380_11107456	Not Available	675	Open in IMG/M
3300010043\|Ga0126380_12100117	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	520	Open in IMG/M
3300010047\|Ga0126382_10251406	All Organisms → cellular organisms → Bacteria	1295	Open in IMG/M
3300010358\|Ga0126370_10146575	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300010358\|Ga0126370_12003963	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	566	Open in IMG/M
3300010360\|Ga0126372_10121779	Not Available	2017	Open in IMG/M
3300010362\|Ga0126377_10301047	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300010362\|Ga0126377_10392699	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1396	Open in IMG/M
3300010362\|Ga0126377_12889834	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	554	Open in IMG/M
3300010362\|Ga0126377_13491628	Not Available	508	Open in IMG/M
3300010366\|Ga0126379_13406055	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300010376\|Ga0126381_101196623	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1098	Open in IMG/M
3300010376\|Ga0126381_103105630	Not Available	658	Open in IMG/M
3300010398\|Ga0126383_11237632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	836	Open in IMG/M
3300010398\|Ga0126383_12568572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	593	Open in IMG/M
3300010403\|Ga0134123_12901261	Not Available	548	Open in IMG/M
3300012203\|Ga0137399_11347782	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	599	Open in IMG/M
3300012361\|Ga0137360_11417971	Not Available	598	Open in IMG/M
3300012363\|Ga0137390_10498608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1192	Open in IMG/M
3300012685\|Ga0137397_10012186	All Organisms → cellular organisms → Bacteria	6011	Open in IMG/M
3300012685\|Ga0137397_10591641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	825	Open in IMG/M
3300012918\|Ga0137396_10200186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1468	Open in IMG/M
3300012922\|Ga0137394_10097067	All Organisms → cellular organisms → Bacteria	2480	Open in IMG/M
3300012944\|Ga0137410_11235530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	644	Open in IMG/M
3300012948\|Ga0126375_10141742	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300012971\|Ga0126369_10157209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2145	Open in IMG/M
3300012971\|Ga0126369_11856601	Not Available	691	Open in IMG/M
3300012971\|Ga0126369_12082373	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	655	Open in IMG/M
3300012971\|Ga0126369_12875974	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012976\|Ga0134076_10168121	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300015245\|Ga0137409_10481997	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1062	Open in IMG/M
3300015357\|Ga0134072_10493299	Not Available	503	Open in IMG/M
3300015374\|Ga0132255_100562474	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300016294\|Ga0182041_11241249	Not Available	681	Open in IMG/M
3300016371\|Ga0182034_10642675	Not Available	898	Open in IMG/M
3300016371\|Ga0182034_11168667	Not Available	669	Open in IMG/M
3300016422\|Ga0182039_11020822	Not Available	742	Open in IMG/M
3300018060\|Ga0187765_10920021	Not Available	593	Open in IMG/M
3300018064\|Ga0187773_10512388	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	718	Open in IMG/M
3300019882\|Ga0193713_1019096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2040	Open in IMG/M
3300019886\|Ga0193727_1147223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	645	Open in IMG/M
3300020006\|Ga0193735_1148060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	612	Open in IMG/M
3300021090\|Ga0210377_10219732	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1201	Open in IMG/M
3300025521\|Ga0210083_1004840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Hoeflea → unclassified Hoeflea → Hoeflea sp. WL0058	1592	Open in IMG/M
3300025905\|Ga0207685_10524297	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	627	Open in IMG/M
3300025913\|Ga0207695_10489350	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300025916\|Ga0207663_10384710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300025917\|Ga0207660_10443521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1049	Open in IMG/M
3300025940\|Ga0207691_10020322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6278	Open in IMG/M
3300025981\|Ga0207640_10069009	All Organisms → cellular organisms → Bacteria → Proteobacteria	2371	Open in IMG/M
3300026297\|Ga0209237_1075351	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300026308\|Ga0209265_1224908	Not Available	515	Open in IMG/M
3300026324\|Ga0209470_1122432	Not Available	1154	Open in IMG/M
3300026334\|Ga0209377_1337599	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300026475\|Ga0257147_1001909	All Organisms → cellular organisms → Bacteria	2248	Open in IMG/M
3300026494\|Ga0257159_1018873	Not Available	1118	Open in IMG/M
3300026498\|Ga0257156_1068358	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300026537\|Ga0209157_1164305	Not Available	982	Open in IMG/M
3300026551\|Ga0209648_10437822	Not Available	823	Open in IMG/M
3300027655\|Ga0209388_1000192	All Organisms → cellular organisms → Bacteria	12244	Open in IMG/M
3300027655\|Ga0209388_1028405	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300027671\|Ga0209588_1080512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1052	Open in IMG/M
3300027748\|Ga0209689_1172458	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300027821\|Ga0209811_10011918	All Organisms → cellular organisms → Bacteria	2798	Open in IMG/M
3300027873\|Ga0209814_10010786	All Organisms → cellular organisms → Bacteria	3593	Open in IMG/M
3300027909\|Ga0209382_10270169	All Organisms → cellular organisms → Bacteria → Proteobacteria	1925	Open in IMG/M
3300028536\|Ga0137415_10750637	Not Available	787	Open in IMG/M
3300028596\|Ga0247821_10541297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	745	Open in IMG/M
3300028719\|Ga0307301_10219920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300028787\|Ga0307323_10240070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	653	Open in IMG/M
3300028792\|Ga0307504_10465052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	509	Open in IMG/M
3300028828\|Ga0307312_10451619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	846	Open in IMG/M
3300031199\|Ga0307495_10015902	All Organisms → cellular organisms → Bacteria	1195	Open in IMG/M
3300031561\|Ga0318528_10270255	Not Available	912	Open in IMG/M
3300031720\|Ga0307469_10869698	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300031740\|Ga0307468_100845277	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	786	Open in IMG/M
3300031770\|Ga0318521_10443799	Not Available	776	Open in IMG/M
3300031793\|Ga0318548_10246216	Not Available	878	Open in IMG/M
3300031820\|Ga0307473_10538009	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	795	Open in IMG/M
3300031820\|Ga0307473_11006968	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium	609	Open in IMG/M
3300031820\|Ga0307473_11408536	Not Available	525	Open in IMG/M
3300031835\|Ga0318517_10124202	Not Available	1143	Open in IMG/M
3300031845\|Ga0318511_10185774	Not Available	920	Open in IMG/M
3300031879\|Ga0306919_10854258	Not Available	698	Open in IMG/M
3300031896\|Ga0318551_10554497	Not Available	661	Open in IMG/M
3300031908\|Ga0310900_11555237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	559	Open in IMG/M
3300031910\|Ga0306923_10029850	All Organisms → cellular organisms → Bacteria	5869	Open in IMG/M
3300031944\|Ga0310884_10128562	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300031981\|Ga0318531_10363072	Not Available	655	Open in IMG/M
3300032000\|Ga0310903_10260070	Not Available	839	Open in IMG/M
3300032009\|Ga0318563_10294884	Not Available	877	Open in IMG/M
3300032013\|Ga0310906_11369798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	518	Open in IMG/M
3300032174\|Ga0307470_11176915	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	621	Open in IMG/M
3300032174\|Ga0307470_11640724	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300032180\|Ga0307471_100751053	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300032180\|Ga0307471_101453891	Not Available	845	Open in IMG/M
3300032180\|Ga0307471_102901975	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300032180\|Ga0307471_103240575	Not Available	577	Open in IMG/M
3300032180\|Ga0307471_103778906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	535	Open in IMG/M
3300032205\|Ga0307472_100295172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1299	Open in IMG/M
3300032205\|Ga0307472_102643723	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300033433\|Ga0326726_10663268	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1005	Open in IMG/M
3300033551\|Ga0247830_10253222	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300034257\|Ga0370495_0189154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0017	661	Open in IMG/M
3300034354\|Ga0364943_0327184	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.13%
Host-Associated	Host-Associated	9.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.16%
Plants	Host-Associated → Plants	9.87%
Aquatic	Environmental → Aquatic	1.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.84%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.89%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.97%
Marine	Environmental → Aquatic → Marine	1.32%
Freshwater	Environmental → Aquatic → Freshwater	0.66%
Peat	Environmental → Terrestrial → Peat	0.66%
Floodplain	Environmental → Terrestrial → Floodplain	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.71%
Loam	Environmental → Terrestrial → Soil → Loam	13.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.58%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.97%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.32%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.32%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	20.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.58%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.97%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.97%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.66%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.89%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.63%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.32%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.32%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.32%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.66%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.66%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300004025	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012976	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300019882	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300025521	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqB_D1 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026308	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026475	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-A	Environmental	Open in IMG/M
3300026494	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-A	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027821	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M
3300034354	Sediment microbial communities from East River floodplain, Colorado, United States - 23_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_119295041	3300000891	Soil	GERLPFLHEKTPVKTVALGGGAFVLVALIPWVGTAALILAAAFSAGATLLSRFGRTQTVVV*
JGI1027J12803_1030805412	3300000955	Soil	MPVSQEHKTPVKSVAWGGAILTLVGLVPWFGLTVLILVAAISAGATLLSRFGRTTAVVV*
JGI25382J37095_101274953	3300002562	Grasslands Soil	GEKMPLLQENKTPFKAVALGGVVLVIVGLVPWIGTLAIVLAASVSAGATLLSRFGRRVEVAA*
Ga0055433_100136562	3300004025	Natural And Restored Wetlands	PFLEEKTPVKAVALGGAVFVLVGLIPWIGTAALILAGAFSAGATLLSRFGRTPAVAV*
Ga0062593_1019428211	3300004114	Soil	VALGGAVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0062590_1025563541	3300004157	Soil	FLQEKTPVKTVALGGAVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0066395_107178971	3300004633	Tropical Forest Soil	SAENRTPVKSVALGGAILVVVGLLPWIGTSVLILAAAVSAGATLLSRFGRAGTVAV*
Ga0066680_108038191	3300005174	Soil	TPLRTVALGGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA*
Ga0066388_1031542021	3300005332	Tropical Forest Soil	AILVVVGLLPWIGTLVLVLAAGISAGATLLSRFWRTGVVAV*
Ga0066388_1049752561	3300005332	Tropical Forest Soil	TVALGGIVLGLLSLVPWIGTSLLAVAAAIAAGAALISRFGRRVPAAA*
Ga0070680_1014336562	3300005336	Corn Rhizosphere	LGERLPFLHEKTPVKTVALGGGAFVLVALIPWVGTAALILAAAFSAGATLLSRFGRTQTVVV*
Ga0070675_1003316733	3300005354	Miscanthus Rhizosphere	VKSVAGGGAILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVGVAA*
Ga0070694_1006188272	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RKTPIKSVARGGAVLVVVGLVPWIGMAALILAAAVSAGATLLSRFGRRAEIAAA*
Ga0070708_1009969691	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0070706_1018603872	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	PVKAVALGGVVFVLVALIPWIGTVALILASAFSAGATLLSRFGRTPAVAV*
Ga0070706_1019691812	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	GENKTPLKAVALGSAVFVIVGLIPWIGTLTIFLAALVAAGATLLSRFGRRVEAAPSS*
Ga0070707_1005196291	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	LGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAVDITGIG*
Ga0070707_1020166281	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	KTVALGGAVFVLVGLIPWIGTVALMLAAAFSAGATLLSRFGRTPAVAV*
Ga0073909_106525011	3300005526	Surface Soil	VALGGVVLALVSLVPWIGTAVVVLVAAIAAGATLVSRFGRTEAATV*
Ga0066704_104937902	3300005557	Soil	KTPLRTVALGGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA*
Ga0066705_100623981	3300005569	Soil	ENKTPLRTVALGGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA*
Ga0066905_1003861011	3300005713	Tropical Forest Soil	VGLVPWFGTAALVLTAAISAGATLLSRFGRTVAVAV*
Ga0066905_1014433112	3300005713	Tropical Forest Soil	KTVALGGVVLALVGLIPWLGTAVLVLVAAIPAGAALLSRFGRTAAIAV*
Ga0066905_1021020011	3300005713	Tropical Forest Soil	KTPVKTVALGGVVLVLVSLVPWLGTAALTLVAAFAAGAALLSRFGRIGVVTV*
Ga0066903_1007973623	3300005764	Tropical Forest Soil	PVKSVALGGAILVVVGLLPWIGTSVLILAAAVSAGATLLSRFGRAGTVAV*
Ga0066903_1009295671	3300005764	Tropical Forest Soil	ENRTPVKSVALGGAILVAVGVVPWIGTSVLILAAAISAGATLLSRFGRTGTVAV*
Ga0068862_1023478852	3300005844	Switchgrass Rhizosphere	LGGGAFVLVALIPWVGTAALILAAAFSAGATLLSRFGRTQTVVV*
Ga0066656_111248311	3300006034	Soil	GGAILVVVGLLPWIGTAALVLAAAVSAGAALLSRFGRRVAIASTA*
Ga0075417_100169421	3300006049	Populus Rhizosphere	AILVLVGLVPWFGTAVLILAAAVSAGATLLSRFGRTLTVAV*
Ga0070715_106713341	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	GGGAILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVAVAA*
Ga0070712_1012835551	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	LPFLQEKTPVKTVVLGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0066659_104577891	3300006797	Soil	LLQEKTPVKTVALGGVVLALVGLVPWIGTAALILVAAFSAGATLLSRFGRTVAVTV*
Ga0075430_1011415881	3300006846	Populus Rhizosphere	KAVALGGAVLVVVGLVPWVGTTVILVAALVAAGATLISRFGQRAGVAA*
Ga0075425_1004336133	3300006854	Populus Rhizosphere	REKTPVKTVALGGAVLGLIGLVPWIGTAVLILVAAFAAGATLLSRFGRTAAIAV*
Ga0075426_102520251	3300006903	Populus Rhizosphere	PVKTVAWGGAILAVVGLVPWIGTTVLILVAAVSAGAALLSRFGRTAPVTV*
Ga0075424_1013702481	3300006904	Populus Rhizosphere	LLPWIGTSVLILAAAISAGATLLSRFGRTGAVAV*
Ga0075424_1015109972	3300006904	Populus Rhizosphere	REKTPVKTVALGGAVLGLIGLLPWIGTAVLVLVAAFAAGATLLSRFGRTAAMAV*
Ga0075424_1022219942	3300006904	Populus Rhizosphere	AILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVAVAV*
Ga0079219_124118402	3300006954	Agricultural Soil	SVAWGGAILALIGLVPWIGTTVLLLVAAVAAGATLLSRFGRTAAGAVQSG*
Ga0099791_100007371	3300007255	Vadose Zone Soil	KIPVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAAAG*
Ga0099791_104026592	3300007255	Vadose Zone Soil	PFLQEKTPVKTVALGGVVLALVSLVPWIGTSVLILVAAIAAGATLISRFGRTVAVAA*
Ga0099791_105485791	3300007255	Vadose Zone Soil	VFVLVGLIPWIGTAALALAAALAAGATLLSRFGRTQAVDITGVG*
Ga0066710_1001096001	3300009012	Grasslands Soil	KTVALGGVVLALVGLVPWIGTAALILVAAFSAGATLLSRFGRTVAVTV
Ga0099829_113232362	3300009038	Vadose Zone Soil	GGAVFALVGLVPWIGTAALILAAAVSAGATLLSRFGRTPAAAG*
Ga0099827_101115971	3300009090	Vadose Zone Soil	LVGLIPWIGTAALILAAAFSAGATLLSRFGRTPAVAV*
Ga0126374_118126991	3300009792	Tropical Forest Soil	VALGGVVLALVGLVPWVGTAVVVLSAAFPAGAALLSRFGRTAMVTV*
Ga0126380_101911871	3300010043	Tropical Forest Soil	SPEHRTPVKSVARGGAILVVVGLLPWIGTAALILAAAISACATLLSRFGHTVAVAV*
Ga0126380_111074561	3300010043	Tropical Forest Soil	KEKTPVKTVALGGIALVLVSLVPWFGTAALMLVAAFAAGAALLSRFGRTRVVTV*
Ga0126380_121001172	3300010043	Tropical Forest Soil	MPVSQQHKTPVKSVARGGAILVVVGLVPWFGTAALVLTAAISAGATLLSRFGRTVAVAV*
Ga0126382_102514061	3300010047	Tropical Forest Soil	GAALALVGLIPWIGTPALALVAAVAAGATLLSRFGRTAAVGLPN*
Ga0126370_101465753	3300010358	Tropical Forest Soil	LVVVGLLPWIGTSVLILAAAISAGATLLSRFGRTGTVAI*
Ga0126370_120039632	3300010358	Tropical Forest Soil	MPFLQDKTPAKTVALGGIVLGLLSLVPWIGTSLLVVAAAIAAGAALISRFGRRVPAAA*
Ga0126372_101217793	3300010360	Tropical Forest Soil	LVPWLGTAALVLVAAFAAGAALLSRFGRRGVVTV*
Ga0126377_103010471	3300010362	Tropical Forest Soil	GERMPISPEHRTPVKSVARGGAILVVVGLLPWFGTAALILAAAISAGATLLSRFGRTQAVAI*
Ga0126377_103926993	3300010362	Tropical Forest Soil	LVGLIPWLGTAVLVLVAAFPAGAALLSRFGRTAAIAV*
Ga0126377_128898341	3300010362	Tropical Forest Soil	RTPAKSVALGGAILVVVGLLPWIGTSVLILAAAISAGATLLSRFGRTGTVAI*
Ga0126377_134916281	3300010362	Tropical Forest Soil	KTVALGGVVLALVSLVPWLGTAALVLVAAFAAGAALLSRFGRAGVVTA*
Ga0126379_134060552	3300010366	Tropical Forest Soil	ILVAVGLVPWIGTSVFILAAAMSAGATLLSRFGRSGTVAV*
Ga0126381_1011966231	3300010376	Tropical Forest Soil	MPVGVENRTPVRSVALGGAILVAVGVVPWIGTSVLILAAAISAGATLLSRFGRTGTVAV*
Ga0126381_1031056301	3300010376	Tropical Forest Soil	PAKSVALGGAIFVVVGLLPWIGTSVLILVAAISAGATLLSHFGRTGTVAV*
Ga0126383_112376321	3300010398	Tropical Forest Soil	LLPWIGTSVLILAAAVSAGATLLSRFGRTGTVAI*
Ga0126383_125685721	3300010398	Tropical Forest Soil	KTAVKTVALGGVVLALVGLIPWIGTAVLLLAAAIAAGAALLSRFGRTAVVAV*
Ga0134123_129012612	3300010403	Terrestrial Soil	FVLVGLIPWLGTAALILAAAFSAGATLLSRFGRTRAVAV*
Ga0137399_113477821	3300012203	Vadose Zone Soil	QEKTPVKTVALGGVVLALVSLVPWIGTSVVIIVAAIAAGATLISRFGRTVAVAV*
Ga0137360_114179711	3300012361	Vadose Zone Soil	LLQEKTPVKTVALGGAVFVLVGLIPWIGTAALVLAAAFSPGATLLSRCGRTQAAAG*
Ga0137390_104986082	3300012363	Vadose Zone Soil	QEKTPIKTVALGGAVFALVGLVPWIGTVTLILAAAVSVGATLLSRFGRTPAVAV*
Ga0137397_100121861	3300012685	Vadose Zone Soil	LPLLQEKTPVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGAMLLSRFGRTQAAAG*
Ga0137397_105916412	3300012685	Vadose Zone Soil	LPLLQEKTPVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0137396_102001861	3300012918	Vadose Zone Soil	KAVALGGVVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV*
Ga0137394_100970671	3300012922	Vadose Zone Soil	VKTVALGGVVFVLVGLIPWIGSAALILAAAFSAGATLLSRFGRTPAVAV*
Ga0137410_112355302	3300012944	Vadose Zone Soil	GERLPFLQEKTPVKAVALGGAVFVLVGLIPWIGTTALILVAAFSAGATLLSRFGRTPAVAV*
Ga0126375_101417422	3300012948	Tropical Forest Soil	ILVVVGLVPWFGTAALVLTAAISAGATLLSRFGRTVAVAV*
Ga0126369_101572093	3300012971	Tropical Forest Soil	EKTPVKTVALGGILLIVVGLVPWIGTLLLVSAAAVSAGATLLSRFGRHAAIAV*
Ga0126369_118566011	3300012971	Tropical Forest Soil	QENRTPVKSVARGGAVLAVIGLLPWIGTIVLILAAAVSAGAALLSRFGRRTEMAA*
Ga0126369_120823732	3300012971	Tropical Forest Soil	LVGLIPWLGTAVLVLVAAIPAGAALLSRFGRTAAIAV*
Ga0126369_128759741	3300012971	Tropical Forest Soil	LGGAILVVVGLLPWIGTSVLILAAAVSAGATLLSRFGRAGTVAV*
Ga0134076_101681212	3300012976	Grasslands Soil	VVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA*
Ga0137409_104819972	3300015245	Vadose Zone Soil	KTPVKTVALGGIILALVSLVPWIGTSVIVLVAAIAAGATLISRFGRRAEVAV*
Ga0134072_104932992	3300015357	Grasslands Soil	LVVVGLLRWIGTAALILTAAVSAGAALLSRFGRKVAIASAA*
Ga0132255_1005624744	3300015374	Arabidopsis Rhizosphere	GGVVLALVGLVPWIGTAALILVAAIAAGATLISRFGRRVAVAV*
Ga0182041_112412492	3300016294	Soil	MPWLSEKTPVKTVALGGVVLALVSLLPWLGTAALMLVAAFAAGAALLSRFGRTGVVTV
Ga0182034_106426751	3300016371	Soil	TAVKTVALGGAVLALVGLIPWIGTAVLLLAAAIAAGAALLSRFGRTVVVAV
Ga0182034_111686672	3300016371	Soil	ERMPWLSEKTPVKTVALGGVVLALVSLLPWLGTAALMLVAAFAAGAALLSRFGRTGVVTV
Ga0182039_110208222	3300016422	Soil	LIGLIPWIGTAVLLLAAAIAAGAALLSRFGRSVVVAV
Ga0187765_109200211	3300018060	Tropical Peatland	WGGAILVVVSLVPWIGTLALIIVAAIAAGATLLSRFGRTAAVAV
Ga0187773_105123882	3300018064	Tropical Peatland	AVLALAGLIPWLGTAVLVVAAALAAGAALLSRFGRTAAITV
Ga0193713_10190961	3300019882	Soil	LGERLPFLQGTTPVKAVALGGAVFVLVGLIPWIGAAALILAAAFSAGATLLSRFGRTQAVAV
Ga0193727_11472232	3300019886	Soil	PFLREKTPVKAVALGGVVFVLVGLIPWIGTAALILAAAFSAGATLLSRFGRTPAVAV
Ga0193735_11480601	3300020006	Soil	LPFLQGKTPVKTVALGGAVFVLVGLIPWIGTAVLILAAAFSAGATLLSRFGRTPAVAV
Ga0210377_102197321	3300021090	Groundwater Sediment	VRRRRPGPPVKYSFLQESKSPLKAVALGGAILAVVGLIPWIGTPAVVAAALVAAGATLLSRFGRRVEAAV
Ga0210083_10048403	3300025521	Natural And Restored Wetlands	PFLEEKTPVKAVALGGAVFVLVGLIPWIGTAALILAGAFSAGATLLSRFGRTPAVAV
Ga0207685_105242971	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	KTPLKSVAGGGAILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVAVAA
Ga0207695_104893501	3300025913	Corn Rhizosphere	TPVKAVAWGGAILAVVGLVPWIGTTMLILVAAVSAGAALLSRFGRTAPVTV
Ga0207663_103847102	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VKTVALGGVVFVLVGLIPWIGTVALMLAAAFSAGATLLSRFGRTPAVAV
Ga0207660_104435212	3300025917	Corn Rhizosphere	VKTVALGGGAFVLVALIPWVGTAALILAAAFSAGATLLSRFGRTQTVVV
Ga0207691_100203221	3300025940	Miscanthus Rhizosphere	KAVAWGGAILAVVGLVPWIGTTMLILVAAVSAGAALLSRFGRTAPVTV
Ga0207640_100690094	3300025981	Corn Rhizosphere	AVVGLVPWIGTTMLILVAAVSAGAALLSRFGRTAPVTV
Ga0209237_10753514	3300026297	Grasslands Soil	TPFKAVALGGVVLVIVGLVPWIGTLAIVLAASVSAGATLLSRFGRRVEVPA
Ga0209265_12249082	3300026308	Soil	GGAVLVVVGLLPWIGTAALILTAAVSAGAALLSRFGRKVAIASAA
Ga0209470_11224322	3300026324	Soil	KTVALGGVVLALVGLVPWIGTAALILVAAFSAGATLLSRFGRSAAVTV
Ga0209377_13375991	3300026334	Soil	GGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA
Ga0257147_10019094	3300026475	Soil	GLIPWIGTAALVLAAAFSAGATLLSRCGRTQAAAG
Ga0257159_10188732	3300026494	Soil	GVVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAAAG
Ga0257156_10683582	3300026498	Soil	LGGAVFVLVGLIPWIGTAALILAAAFSAGATLLSRFGRTQAAAG
Ga0209157_11643052	3300026537	Soil	FKAVALGGVVLVIVGLVPWIGTLAIVLAASVSAGATLLSRFGRRVEVPA
Ga0209648_104378221	3300026551	Grasslands Soil	LGERLPFLQEKTPVKTVTLGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAAAG
Ga0209388_10001921	3300027655	Vadose Zone Soil	PVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAAAG
Ga0209388_10284051	3300027655	Vadose Zone Soil	EKIPVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV
Ga0209588_10805122	3300027671	Vadose Zone Soil	VGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV
Ga0209689_11724581	3300027748	Soil	NKTPLRTVALGGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVEVAA
Ga0209811_100119181	3300027821	Surface Soil	IKDKTPVKTVALGGVVLALVSLVPWIGTSVVVLVAAIAAGATLVSRFGRTEAATV
Ga0209814_100107861	3300027873	Populus Rhizosphere	VKSVAIGGAILVLVGLVPWFGTAVLILAAAVSAGATLLSRFGRTLTVAV
Ga0209382_102701693	3300027909	Populus Rhizosphere	LGERMPAGQAQRTPVKTVAWGGAILAVVGLVPWIGTTVLILVAAVSAGAALLSRFGRTAPVTV
Ga0137415_107506371	3300028536	Vadose Zone Soil	KAVALGGVVFVLVALIPWIGTVALILAAALSAGATLLSRFGRTQAAAG
Ga0247821_105412972	3300028596	Soil	PRRMAVGQAQRTPVKAVAWGGAILAVVGLVPWIGTTVLILVAAVSAGAALLSRFGRTAPVTV
Ga0307301_102199201	3300028719	Soil	KAVALGGAVFVLVGLIPWIGTAVLILAAAFSAGATLLSRFGRTPVVAV
Ga0307323_102400702	3300028787	Soil	LQEKTPVKAVALGGAVFVLVGLIPWIGTAVLILAAAFSAGATLLSRFGRTPVVAV
Ga0307504_104650522	3300028792	Soil	TPVKTVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAVQVS
Ga0307312_104516191	3300028828	Soil	QEKTPVKAVALGGAVFVLVGLIPWIGTAVLILAAAFSAGATLLSRFGRTPVVAV
Ga0307495_100159021	3300031199	Soil	FLRENRTPLRTVALGGVVLVLVGLIPWIGTVVVVLAAVVAAGATLLSRFGRRVAVAA
Ga0318528_102702552	3300031561	Soil	KTVALGGAVLALVGLIPWIGTAVLLLAAAIAAGAALLSRFGRTVVVAV
Ga0307469_108696981	3300031720	Hardwood Forest Soil	VGLLPWIGTAALILAAAISAGATLLSRFGRTVAVAA
Ga0307468_1008452771	3300031740	Hardwood Forest Soil	GLLPWIGTAALTLAAAISAGATLLSRFGRTVAVAA
Ga0318521_104437991	3300031770	Soil	LALVGLIPWIGTAVLLLAAAIAAGAALLSRFGRTVVVAV
Ga0318548_102462161	3300031793	Soil	GGAIFVVVGLLPWIGTSVLILVAAISAGATLLSRFGRTGTVAV
Ga0307473_105380092	3300031820	Hardwood Forest Soil	PFLRDKTPVKTVALGGVVLALVGLIPWLGTAVLVLVAAFPAGAALLSRFGRTAAIAV
Ga0307473_110069681	3300031820	Hardwood Forest Soil	AGGGAILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVGVAA
Ga0307473_114085361	3300031820	Hardwood Forest Soil	GGAVFVLVGLIPWIGTVALILAAAVSAGATLLSRFGRTPAVDV
Ga0318517_101242021	3300031835	Soil	LGERMPWLSEKTPVKTVALGGVVLALVSLLPWLGTAALMLVAAFAAGAALLSRFGRTGVVTV
Ga0318511_101857741	3300031845	Soil	LALIGLIPWIGTAVLLLAAAIAAGAALLSRFGRTVVVAV
Ga0306919_108542582	3300031879	Soil	TENRTPAKSVALGGAIFVVVGLLPWIGTSVLILVAAISAGATLLSRFGRTGTVAV
Ga0318551_105544972	3300031896	Soil	GVVLALVSLLPWLGTAALMLVAAFAAGAALLSRFGRTGVVTV
Ga0310900_115552372	3300031908	Soil	KTPVKTVALGGVLLAVVGLIPWLGTTALILAAAISAGAALLSRFGRRPAVVTV
Ga0306923_100298501	3300031910	Soil	VGTENRTPAKSVALGGAIFVVVGLLPWIGTSVLILVAAISAGATLLSRFGRTGTVAV
Ga0310884_101285621	3300031944	Soil	VALGGVVLAVVSLVPWIGTSVVVLVAAIAAGATLVSRFGRTEAATV
Ga0318531_103630722	3300031981	Soil	TPAKSVALGGAIFVVVGLLPWIGTSVLILVAAISAGATLLSRFGRTGTVAV
Ga0310903_102600702	3300032000	Soil	KTPVKTVALGGVLLAVVGLIPWLGTTALILVAAISAGAALLSRFGRRPAVVTV
Ga0318563_102948841	3300032009	Soil	VKTVALGGVVLALVSLLPWLGTAALMLVAAFAAGAALLSRFGRTGVVTV
Ga0310906_113697982	3300032013	Soil	AVVGLIPWLGTTALILAAAISAGAALLSRFGRRPVAVTV
Ga0307470_111769152	3300032174	Hardwood Forest Soil	EKTPVKTVALGGVLLAVVGLIPWLGTTALILAAAISAGAALLSRFGRRPAVVTV
Ga0307470_116407241	3300032174	Hardwood Forest Soil	QEKTPVKAVALGGLVLALVGLIPWVGAPVLVLVAAFPAGAALLSRFGRTAAVAV
Ga0307471_1007510533	3300032180	Hardwood Forest Soil	VVFVLVGLIPWIGTVALILAAAVSAGATLLSRFGRTPAVAV
Ga0307471_1014538911	3300032180	Hardwood Forest Soil	AGLALVGLIPWIGTLAIFLAAMMAAGATLLSRFGRRGGVPA
Ga0307471_1029019752	3300032180	Hardwood Forest Soil	KTPVKAVALGGAVFALVGLIPWIGTVALILAAAFSAGATLLSRFGRTQAVDITGIG
Ga0307471_1032405752	3300032180	Hardwood Forest Soil	ARGGAILVVVGLLPWIGTAALILAAAISAGATLLSRFGRTVAVAV
Ga0307471_1037789061	3300032180	Hardwood Forest Soil	VKAVARGGALLVVVGLIPWIGTVALIFVAAVSAGATLLSRFGRRAEIAAA
Ga0307472_1002951723	3300032205	Hardwood Forest Soil	MGAPVKAVALGGVVFVLVALIPWIGTVALILAAAFSAGATLLSRFGRTQAVVV
Ga0307472_1026437231	3300032205	Hardwood Forest Soil	VLVLVGLIPWFGTLAITLAAVLSGGAALLSRFGRRVQAAA
Ga0326726_106632682	3300033433	Peat Soil	GEKLPFLQEKTPVKTVALGGVVLALVSLVPWIGTSVIILVAGIAAGATLISRFGRTVVVT
Ga0247830_102532222	3300033551	Soil	VKTVAWGGAILAVVGLVPWIGTTVLILVAAVSAGAALLSRFGRTAPVTV
Ga0370495_0189154_527_661	3300034257	Untreated Peat Soil	LGGVVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRAQAVAV
Ga0364943_0327184_1_153	3300034354	Sediment	PVKTVALGGVVFVLVGLIPWIGTVALILAAAFSAGATLLSRFGRTPAVAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F046037

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences