Metagenome Family F045958

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045958
Family Type	Metagenome
Number of Sequences	152
Average Sequence Length	78 residues
Representative Sequence	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQD
Number of Associated Samples	103
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.76 %
% of genes near scaffold ends (potentially truncated)	27.63 %
% of genes from short scaffolds (< 2000 bps)	75.66 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.77

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.737 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (23.026 % of family members)
Environment Ontology (ENVO)	Unclassified (35.526 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.632 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.33% β-sheet: 17.48% Coil/Unstructured: 60.19%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.77
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.77
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.110.2.1: GAF domain	d1mc0a1	1mc0	0.60616
d.110.2.0: automated matches	d6p58a_	6p58	0.54669
d.110.2.0: automated matches	d7ckva1	7ckv	0.54014
d.110.2.1: GAF domain	d1mc0a2	1mc0	0.53618
d.145.1.4: CorC/HlyC domain-like	d2p3ha1	2p3h	0.52935

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF01061	ABC2_membrane	6.58
PF00753	Lactamase_B	5.92
PF02515	CoA_transf_3	5.26
PF13436	Gly-zipper_OmpA	3.29
PF00691	OmpA	3.29
PF12698	ABC2_membrane_3	3.29
PF05685	Uma2	3.29
PF13488	Gly-zipper_Omp	2.63
PF12705	PDDEXK_1	2.63
PF02668	TauD	2.63
PF04519	Bactofilin	2.63
PF12695	Abhydrolase_5	1.97
PF13744	HTH_37	1.97
PF13361	UvrD_C	1.97
PF00296	Bac_luciferase	1.97
PF07690	MFS_1	1.97
PF12697	Abhydrolase_6	1.32
PF13533	Biotin_lipoyl_2	1.32
PF03631	Virul_fac_BrkB	1.32
PF00529	CusB_dom_1	0.66
PF01425	Amidase	0.66
PF10518	TAT_signal	0.66
PF00326	Peptidase_S9	0.66
PF00575	S1	0.66
PF01244	Peptidase_M19	0.66
PF13711	DUF4160	0.66
PF02082	Rrf2	0.66
PF13441	Gly-zipper_YMGG	0.66
PF09350	DJC28_CD	0.66
PF00990	GGDEF	0.66
PF13304	AAA_21	0.66
PF12146	Hydrolase_4	0.66
PF00486	Trans_reg_C	0.66
PF16576	HlyD_D23	0.66
PF01734	Patatin	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	5.26
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	3.29
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	2.63
COG2175	Taurine dioxygenase, alpha-ketoglutarate-dependent	Secondary metabolites biosynthesis, transport and catabolism [Q]	2.63
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.97
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	1.32
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.66
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.66
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.66
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.66
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.66
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.66
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.66
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.66
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.66
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.66
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.66
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.66
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.74 %
Unclassified	root	N/A	5.26 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.03 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	15.13 %
Unclassified	root	N/A	5.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.32 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	15.13 %
Unclassified	root	N/A	5.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.29 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.32 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.32 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.66 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	15.13 %
Unclassified	root	N/A	5.26 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	1.32 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.66 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	11.84 %
Unclassified	root	N/A	5.26 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1.32 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.66 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.84 %
Unclassified	root	N/A	5.26 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.66 %
Methyloterricola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloterricola	0.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.66 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.84 %
Unclassified	root	N/A	5.26 %
Methyloterricola oryzae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloterricola → Methyloterricola oryzae	0.66 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.66 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.66 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.66 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101591877	All Organisms → cellular organisms → Bacteria	4072	Open in IMG/M
3300000955\|JGI1027J12803_108243037	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300002558\|JGI25385J37094_10029760	All Organisms → cellular organisms → Bacteria	1929	Open in IMG/M
3300002562\|JGI25382J37095_10000502	All Organisms → cellular organisms → Bacteria	9898	Open in IMG/M
3300002908\|JGI25382J43887_10042861	All Organisms → cellular organisms → Bacteria	2460	Open in IMG/M
3300003324\|soilH2_10003947	All Organisms → cellular organisms → Bacteria → Proteobacteria	8958	Open in IMG/M
3300005166\|Ga0066674_10046809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1944	Open in IMG/M
3300005167\|Ga0066672_10218023	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300005174\|Ga0066680_10092221	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1842	Open in IMG/M
3300005174\|Ga0066680_10172343	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300005176\|Ga0066679_10226307	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300005176\|Ga0066679_10299923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1044	Open in IMG/M
3300005176\|Ga0066679_10904834	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300005177\|Ga0066690_10137280	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300005181\|Ga0066678_10544908	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	770	Open in IMG/M
3300005184\|Ga0066671_10140458	All Organisms → cellular organisms → Bacteria	1395	Open in IMG/M
3300005186\|Ga0066676_10005666	All Organisms → cellular organisms → Bacteria → Proteobacteria	5782	Open in IMG/M
3300005187\|Ga0066675_10010503	All Organisms → cellular organisms → Bacteria	4842	Open in IMG/M
3300005187\|Ga0066675_11260100	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	547	Open in IMG/M
3300005332\|Ga0066388_100089638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3492	Open in IMG/M
3300005332\|Ga0066388_100482217	All Organisms → cellular organisms → Bacteria → Proteobacteria	1878	Open in IMG/M
3300005332\|Ga0066388_100626223	All Organisms → cellular organisms → Bacteria	1695	Open in IMG/M
3300005332\|Ga0066388_100823309	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300005332\|Ga0066388_107069103	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300005406\|Ga0070703_10525579	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300005445\|Ga0070708_100016878	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6071	Open in IMG/M
3300005445\|Ga0070708_100098962	All Organisms → cellular organisms → Bacteria → Proteobacteria	2667	Open in IMG/M
3300005445\|Ga0070708_100115321	All Organisms → cellular organisms → Bacteria → Proteobacteria	2473	Open in IMG/M
3300005446\|Ga0066686_10036361	All Organisms → cellular organisms → Bacteria	2921	Open in IMG/M
3300005447\|Ga0066689_10001830	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7712	Open in IMG/M
3300005450\|Ga0066682_10017859	All Organisms → cellular organisms → Bacteria	3945	Open in IMG/M
3300005454\|Ga0066687_10392629	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	801	Open in IMG/M
3300005467\|Ga0070706_101870070	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300005468\|Ga0070707_100796734	All Organisms → cellular organisms → Bacteria	909	Open in IMG/M
3300005518\|Ga0070699_100303432	All Organisms → cellular organisms → Bacteria → Proteobacteria	1433	Open in IMG/M
3300005518\|Ga0070699_101846738	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	553	Open in IMG/M
3300005536\|Ga0070697_100161532	All Organisms → cellular organisms → Bacteria → Proteobacteria	1893	Open in IMG/M
3300005536\|Ga0070697_100814907	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	826	Open in IMG/M
3300005536\|Ga0070697_101222324	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300005540\|Ga0066697_10070460	All Organisms → cellular organisms → Bacteria	2006	Open in IMG/M
3300005546\|Ga0070696_100530765	All Organisms → cellular organisms → Bacteria → Proteobacteria	940	Open in IMG/M
3300005546\|Ga0070696_101155495	All Organisms → cellular organisms → Bacteria → Proteobacteria	653	Open in IMG/M
3300005549\|Ga0070704_100716150	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300005554\|Ga0066661_10460017	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	776	Open in IMG/M
3300005557\|Ga0066704_10389198	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	928	Open in IMG/M
3300005559\|Ga0066700_10157977	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300005559\|Ga0066700_10268674	All Organisms → cellular organisms → Bacteria	1196	Open in IMG/M
3300005559\|Ga0066700_10582757	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	780	Open in IMG/M
3300006049\|Ga0075417_10013196	All Organisms → cellular organisms → Bacteria → Proteobacteria	3129	Open in IMG/M
3300006049\|Ga0075417_10177300	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300006049\|Ga0075417_10222493	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300006173\|Ga0070716_100526073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	877	Open in IMG/M
3300006804\|Ga0079221_10877511	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300006844\|Ga0075428_100872278	All Organisms → cellular organisms → Bacteria	955	Open in IMG/M
3300006845\|Ga0075421_101363608	All Organisms → cellular organisms → Bacteria	782	Open in IMG/M
3300006852\|Ga0075433_10218209	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300006854\|Ga0075425_101451745	All Organisms → cellular organisms → Bacteria	775	Open in IMG/M
3300006871\|Ga0075434_101062681	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	823	Open in IMG/M
3300006871\|Ga0075434_102073331	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300006904\|Ga0075424_101488157	All Organisms → cellular organisms → Bacteria	719	Open in IMG/M
3300006904\|Ga0075424_102270427	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300006954\|Ga0079219_10006638	All Organisms → cellular organisms → Bacteria	3601	Open in IMG/M
3300006969\|Ga0075419_10015319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4723	Open in IMG/M
3300007076\|Ga0075435_101840867	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300007265\|Ga0099794_10061459	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1825	Open in IMG/M
3300009012\|Ga0066710_101412016	All Organisms → cellular organisms → Bacteria → Proteobacteria	1078	Open in IMG/M
3300009012\|Ga0066710_104283744	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300009038\|Ga0099829_10902998	Not Available	733	Open in IMG/M
3300009089\|Ga0099828_10056531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methyloterricola → Methyloterricola oryzae	3277	Open in IMG/M
3300009090\|Ga0099827_10687186	All Organisms → cellular organisms → Bacteria → Proteobacteria	884	Open in IMG/M
3300009090\|Ga0099827_10749189	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	845	Open in IMG/M
3300009100\|Ga0075418_10033895	All Organisms → cellular organisms → Bacteria	5550	Open in IMG/M
3300009137\|Ga0066709_102170469	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300009137\|Ga0066709_102646892	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300009137\|Ga0066709_103179771	Not Available	599	Open in IMG/M
3300009147\|Ga0114129_10017055	All Organisms → cellular organisms → Bacteria	10339	Open in IMG/M
3300009147\|Ga0114129_11094726	Not Available	998	Open in IMG/M
3300009147\|Ga0114129_11971710	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300009162\|Ga0075423_12344325	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300009162\|Ga0075423_12361525	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300009777\|Ga0105164_10014662	All Organisms → cellular organisms → Bacteria → Proteobacteria	4484	Open in IMG/M
3300010046\|Ga0126384_10005032	All Organisms → cellular organisms → Bacteria	8063	Open in IMG/M
3300010046\|Ga0126384_10155419	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300010046\|Ga0126384_10434612	All Organisms → cellular organisms → Bacteria	1117	Open in IMG/M
3300010048\|Ga0126373_10355286	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300010301\|Ga0134070_10001545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6903	Open in IMG/M
3300010304\|Ga0134088_10016499	All Organisms → cellular organisms → Bacteria	3224	Open in IMG/M
3300010320\|Ga0134109_10505155	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300010359\|Ga0126376_10110860	All Organisms → cellular organisms → Bacteria → Proteobacteria	2116	Open in IMG/M
3300010359\|Ga0126376_10705491	All Organisms → cellular organisms → Bacteria	971	Open in IMG/M
3300010359\|Ga0126376_10983257	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010359\|Ga0126376_13203018	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300010360\|Ga0126372_10292782	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300010376\|Ga0126381_101248644	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1074	Open in IMG/M
3300010398\|Ga0126383_10996962	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300012096\|Ga0137389_10758812	Not Available	833	Open in IMG/M
3300012199\|Ga0137383_10512261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	879	Open in IMG/M
3300012205\|Ga0137362_10170175	All Organisms → cellular organisms → Bacteria	1869	Open in IMG/M
3300012208\|Ga0137376_10701193	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	873	Open in IMG/M
3300012285\|Ga0137370_10157146	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300012362\|Ga0137361_10004456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9279	Open in IMG/M
3300012362\|Ga0137361_10769225	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	877	Open in IMG/M
3300012362\|Ga0137361_11802456	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300012685\|Ga0137397_10202145	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300012922\|Ga0137394_10164453	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300012922\|Ga0137394_10267921	All Organisms → cellular organisms → Bacteria → Proteobacteria	1461	Open in IMG/M
3300012922\|Ga0137394_11094682	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	660	Open in IMG/M
3300012922\|Ga0137394_11473437	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300012923\|Ga0137359_10450882	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300012948\|Ga0126375_10577871	Not Available	854	Open in IMG/M
3300012971\|Ga0126369_11738523	All Organisms → cellular organisms → Bacteria	713	Open in IMG/M
3300017959\|Ga0187779_10596704	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300017966\|Ga0187776_10558745	Not Available	791	Open in IMG/M
3300018431\|Ga0066655_10039906	All Organisms → cellular organisms → Bacteria	2355	Open in IMG/M
3300018433\|Ga0066667_10063934	All Organisms → cellular organisms → Bacteria	2292	Open in IMG/M
3300018433\|Ga0066667_11031034	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300018433\|Ga0066667_11132360	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300018468\|Ga0066662_10496430	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1110	Open in IMG/M
3300018482\|Ga0066669_10000603	All Organisms → cellular organisms → Bacteria → Proteobacteria	11926	Open in IMG/M
3300018482\|Ga0066669_10135140	All Organisms → cellular organisms → Bacteria	1785	Open in IMG/M
3300018482\|Ga0066669_11020865	All Organisms → cellular organisms → Bacteria → Proteobacteria	747	Open in IMG/M
3300019883\|Ga0193725_1000121	All Organisms → cellular organisms → Bacteria → Proteobacteria	26296	Open in IMG/M
3300024284\|Ga0247671_1062759	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300025173\|Ga0209824_10012899	All Organisms → cellular organisms → Bacteria → Proteobacteria	3574	Open in IMG/M
3300025910\|Ga0207684_10177258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1838	Open in IMG/M
3300026298\|Ga0209236_1035065	All Organisms → cellular organisms → Bacteria	2640	Open in IMG/M
3300026313\|Ga0209761_1066557	All Organisms → cellular organisms → Bacteria	1932	Open in IMG/M
3300026318\|Ga0209471_1176960	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	847	Open in IMG/M
3300026318\|Ga0209471_1228565	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	672	Open in IMG/M
3300026324\|Ga0209470_1127388	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300026332\|Ga0209803_1002182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12358	Open in IMG/M
3300026524\|Ga0209690_1045778	All Organisms → cellular organisms → Bacteria	1989	Open in IMG/M
3300026532\|Ga0209160_1098556	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300026536\|Ga0209058_1030419	All Organisms → cellular organisms → Bacteria	3342	Open in IMG/M
3300027748\|Ga0209689_1037671	All Organisms → cellular organisms → Bacteria → Proteobacteria	2811	Open in IMG/M
3300027748\|Ga0209689_1228505	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300027748\|Ga0209689_1236881	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	766	Open in IMG/M
3300027873\|Ga0209814_10014169	All Organisms → cellular organisms → Bacteria	3176	Open in IMG/M
3300027875\|Ga0209283_10240142	Not Available	1202	Open in IMG/M
3300027882\|Ga0209590_10307041	All Organisms → cellular organisms → Bacteria → Proteobacteria	1019	Open in IMG/M
3300027909\|Ga0209382_10369446	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
(restricted) 3300031248\|Ga0255312_1090443	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300031720\|Ga0307469_10615303	Not Available	973	Open in IMG/M
3300031720\|Ga0307469_10800339	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300031720\|Ga0307469_11871790	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300031720\|Ga0307469_12520860	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	503	Open in IMG/M
3300031740\|Ga0307468_100371774	All Organisms → cellular organisms → Bacteria → Proteobacteria	1077	Open in IMG/M
3300031820\|Ga0307473_10164466	All Organisms → cellular organisms → Bacteria	1279	Open in IMG/M
3300032180\|Ga0307471_100046943	All Organisms → cellular organisms → Bacteria	3524	Open in IMG/M
3300032180\|Ga0307471_102929839	All Organisms → cellular organisms → Bacteria → Proteobacteria	606	Open in IMG/M
3300032180\|Ga0307471_103558115	All Organisms → cellular organisms → Bacteria	551	Open in IMG/M
3300032205\|Ga0307472_100328815	All Organisms → cellular organisms → Bacteria → Proteobacteria	1244	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.18%
Host-Associated	Host-Associated	13.82%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.87%
Plants	Host-Associated → Plants	13.82%
Aquatic	Environmental → Aquatic	1.32%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.82%
Freshwater	Environmental → Aquatic → Freshwater	1.32%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.08%
Loam	Environmental → Terrestrial → Soil → Loam	13.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.82%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.32%
Sand	Environmental → Terrestrial → Soil → Sand	0.66%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	34.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.82%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.53%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	7.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.29%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.97%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	1.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.32%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	23.03%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	13.82%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	13.82%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	11.84%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.29%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.97%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	1.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.32%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.66%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.66%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002562	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005176	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09082015	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019883	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2	Environmental	Open in IMG/M
3300024284	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK12	Environmental	Open in IMG/M
3300025173	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026298	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026318	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)	Environmental	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031248 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1015918778	3300000364	Soil	VPFARIPFWQLRRHGVVEEAVRGGTRRRVVGRDWALPEAVREPLRALLEPLGFDVDRSITVRELADENTLEFRQDESP*
JGI1027J12803_1082430372	3300000955	Soil	AVRPRTRRVATPVPFARIPFWQLRRHGVVEEAVRGGTRRRVVGRDWALPEAVREPLRALLEPLGFDVDRSITVRELADENT
JGI25385J37094_100297602	3300002558	Grasslands Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRCRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
JGI25382J37095_1000050210	3300002562	Grasslands Soil	MPVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLEPLGFELRRPILVSEPEDENALEFRQDDGGDGD*
JGI25382J43887_100428612	3300002908	Grasslands Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
soilH2_100039478	3300003324	Sugarcane Root And Bulk Soil	MPVARIPFWRLRAQGVVEEAVRGGSRRRVTDREWPLPDAVRDKMRGMLEPLGFDLARVVTVREPAGEEALEFHQD*
Ga0066674_100468092	3300005166	Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRRRIGGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
Ga0066672_102180232	3300005167	Soil	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQDG*
Ga0066680_100922213	3300005174	Soil	MALARIPFWRLRAHGVVEEAVRGGSRRRLLGHEWPLPDGVRERMRGLLEPLGFDLARPVAVREPEGEDALEFSQDA*
Ga0066680_101723432	3300005174	Soil	MPVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLEPLGFELRRPILVSEPEDENALEFRQDDGGDG
Ga0066679_102263071	3300005176	Soil	ARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQDVQEGNNGPNHG*
Ga0066679_102999232	3300005176	Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV*
Ga0066679_109048342	3300005176	Soil	MPVARIPFWQLRRQGVVEEAIRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDVQGEQ*
Ga0066690_101372801	3300005177	Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDVQGEQ*
Ga0066678_105449082	3300005181	Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEF
Ga0066671_101404583	3300005184	Soil	MPVTRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPEGVRERMRELLAPLGFDLGRPIFVREPEGEDALEFRQDA*
Ga0066676_100056665	3300005186	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVFERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDV*
Ga0066675_100105033	3300005187	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVLERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDV*
Ga0066675_112601002	3300005187	Soil	MPITRIPFWQLRRHGVVEEAIRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEGEDALEFRQDGDPAVV*
Ga0066388_1000896383	3300005332	Tropical Forest Soil	VRPWRGSVATCRRYSERMPVTRIPFWRLRAQGVVEEAVRGGSRRRATDHDWPLPDAVREKMRGVLEPLGFDLARAVTVREPSGEDALEFQQD*
Ga0066388_1004822174	3300005332	Tropical Forest Soil	VSVATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPESVREPLRALLEPLGFDVGRSISVREPEGENALEFRQE*
Ga0066388_1006262233	3300005332	Tropical Forest Soil	MPVTRIPFWQLRRHGVVEEAVRGGHRRRIVGRDWLLPDAVRDRVREMLEPLGFDVGRPILVREPDGEDALEFRQDDT
Ga0066388_1008233091	3300005332	Tropical Forest Soil	VSVATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPESVREPLRALLEPLGFDVGRSISVREPEGENALEFRQD*
Ga0066388_1070691031	3300005332	Tropical Forest Soil	VSVATAVPFARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADENTLEFRQD*
Ga0070703_105255792	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	VSVATPVPITRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDSVRERMRDLLEPLGFDVARSIIVRELEDENALEFRQD*
Ga0070708_1000168783	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRALLEPLGFELDRPILVREPEGEDALEFRQDGV*
Ga0070708_1000989623	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VPIALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPEPVRERVRPLLEPLGFDLTRPISVREPANQDALEFTQPE*
Ga0070708_1001153211	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VSVTPAVPITRIPFWELRRHGVVEEAVRGGSRRRVVGRDWPLPDSVRDRMRDLLEPLGFDVARAIMVRELEDQNALEFRQD*
Ga0066686_100363613	3300005446	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPEAVLERVRELLEPLGFDLGRPIFVREPEGEDERT*
Ga0066689_100018302	3300005447	Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGADGD*
Ga0066682_100178593	3300005450	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVFERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDVIDG*
Ga0066687_103926291	3300005454	Soil	MPVARIPFWQLRRQGVVEEAIRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGLELGRPILVREPEGEDALEFRQDVQGEQ*
Ga0070706_1018700702	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VSVTPAVPITRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDSVRERMRDLLEPLGFDVARPIMVRELEDQNALE
Ga0070707_1007967342	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPVALIPFWRLRQHAVSEEAIRGGSRRRALDRTWPLPDAVKERMRDLLEPLGFDLDRPISVNEPANQDALEFTQPE*
Ga0070699_1003034322	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VPVALIPFWRLRQHAASEEAVRGGSRRRVLDRTWPLPDAVKERLRPLLEPLGFDVDQPVSVSEPVGQDALEFTQP*
Ga0070699_1018467381	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MPVTRIPFWQLRRHGVAEEAVRGGSRRRILGRDWPLPEPVRERLRALLEPLGFDLQRPVSVREPEGEDALEFSQS
Ga0070697_1001615321	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	ARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRTLLEPLGFELDRPILVREPEGEDALEFRQDGV*
Ga0070697_1008149072	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MTALARIPFWRLRAHGVVEEAVRGGSRRRQIGHEWLLPAGVRERMRGLLEPLGFDLARPVAVREPEGEDALEFSQDA*
Ga0070697_1012223242	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	VSVTPAVPITRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDSVRERMRDLLEPLGFDVARPIMVRELEDQNALEFRQD*
Ga0066697_100704604	3300005540	Soil	PFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV*
Ga0070696_1005307652	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VPVTRIPFWRLRAHGVVEEAVRGGTRRRLVGRDWTLPDAVHERVRGLLEPLGFDLGRPVSVREPEGEDALEFRQD*
Ga0070696_1011554951	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MPVTRIPFWQLRRHGVAEEAVRGGSRRRILGRDWPLPEPVRERLRALLEPLGFDLQRPVSVREPEGEDALEFSQS*
Ga0070704_1007161502	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VPVALIPFWRLRQHAASEEAVRGGSRRRVLDRTWPLPDAVKERLRPLLEPLGFDVDQPVSVSEPANQDALEFTQP*
Ga0066661_104600171	3300005554	Soil	MPVARIPFWQLRRQGVVEEAIRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPGVV*
Ga0066704_103891982	3300005557	Soil	VTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLEPLGFELRRPILVSEPEDENALEFRQDDGGDGN*
Ga0066700_101579772	3300005559	Soil	MPVARIPFWQLRRQGVVEEAIRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVCEPEGEDALEFRQDVQGEQ*
Ga0066700_102686742	3300005559	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVLERVRELLEPLGFDLGRPIFVREPEGEEPSAVSNSRH*
Ga0066700_105827572	3300005559	Soil	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQD
Ga0075417_100131963	3300006049	Populus Rhizosphere	VPATRIPFWQLRRHGVAEEAVRGGSRRRIVGRDWPLPDGVRERLRGLLEPIGFDLARPIVVREPHGEDALEFQQD*
Ga0075417_101773004	3300006049	Populus Rhizosphere	VSVATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPASVREPLRALLEPLGFDVGRSISVREPEDENALEFRQD*
Ga0075417_102224933	3300006049	Populus Rhizosphere	GGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0070716_1005260731	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV*
Ga0079221_108775111	3300006804	Agricultural Soil	MARARGRGAACRSRTSRVTRVPIARIPFWQLRRHGVVEEAVRGGTRRRIVGRDWPLPDAVRETMRGLLEPLGFDLGRAISVREPDGEEALE
Ga0075428_1008722783	3300006844	Populus Rhizosphere	AAGPRPRGLAAPVPATRIPFWQLRRHGVAEEAVRGGSRRRIVGRDWPLPDGVRERLRGLLEPIGFDLARPIVVREPHGEDALEFQQD*
Ga0075421_1013636083	3300006845	Populus Rhizosphere	LATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVTRSIIVRELGDDNALEFRQD*
Ga0075433_102182093	3300006852	Populus Rhizosphere	VSVATAVPSARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSINVRELADDNTLEFRQD*
Ga0075425_1014517453	3300006854	Populus Rhizosphere	WQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSINVRELADDNTLEFRQD*
Ga0075434_1010626812	3300006871	Populus Rhizosphere	MPVTRVPFWRLRAQGVVEEAVRGGTRRRVRGHDWPLPEAVRDRMREVLEPLGFDLARPVSVREPEGEDALEFSQDEPGPGGECRGS*
Ga0075434_1020733313	3300006871	Populus Rhizosphere	WQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0075424_1014881571	3300006904	Populus Rhizosphere	VPLARIPFWQLRRHGVVEEAVRGGTRRRVVGRDWALPEAVREPLRALLEPLGFDVDRSISVRELADENTLEFRQDESG*
Ga0075424_1022704273	3300006904	Populus Rhizosphere	LRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0079219_100066387	3300006954	Agricultural Soil	PIARIPFWQLRRHGVVEEAVRGGTRRRIVGRDWPLPDAVRETMRGLLEPLGFDLGRAISVREPDGEEALEFRQDAGGH*
Ga0075419_100153194	3300006969	Populus Rhizosphere	VSVATSVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPASVREPLRALLEPLGFDVGRSISVREPEDENALEFRQD*
Ga0075435_1018408671	3300007076	Populus Rhizosphere	SRIPFWQLRRHGVVEEAVRGGARRRIVGRDWPLPDAVRERMRGLLEPVGFDFARPILVREPDGEDALEFRQD*
Ga0099794_100614593	3300007265	Vadose Zone Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEG
Ga0066710_1014120162	3300009012	Grasslands Soil	MPVTRIPFWQLRRHGVAEEAVRGGSRRRILGRDWPLPEAVHERVRTLLEPLGFDLERPVSVREPEDEDALEFRQDDGQN
Ga0066710_1042837441	3300009012	Grasslands Soil	MPITRIPFWQLRRHGVVEEAIRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEGEDALEFRQDGDPAVV
Ga0099829_109029982	3300009038	Vadose Zone Soil	MPIARIPFWELRRHGVAEEAVRGGVRTRILDREWPLPDATRERLRELLEPLGFDLARPVSVREPAGEDALEFRQEEPPA*
Ga0099828_100565314	3300009089	Vadose Zone Soil	VPIALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERMRNLLEPLGFDLDRPISVREPANQDALEFIQPE*
Ga0099827_106871862	3300009090	Vadose Zone Soil	VPIALIPFWRLRQHAVSEEAVRGGSRRRALDRTWSLPEPVRERMRPLLEPLGFDLDRPISVREPANQDALEFIQPE*
Ga0099827_107491893	3300009090	Vadose Zone Soil	MTALARIPFWRLRAHGVFEEAVRGGSRRRQIGHEWPLPDGVRERMRGLLEPLGFDLARPVAVREPEGEDALEFSQ
Ga0075418_1003389510	3300009100	Populus Rhizosphere	VPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPASVREPLRALLEPLGFDVGRSISVREPEDENALEFRQD*
Ga0066709_1021704692	3300009137	Grasslands Soil	MALARIPFWRLRAHGVVEEAVRGGSRRRLVGREWPLPAGVRERMRGLLEPFGFDLARPVAVREPEGEDALEFSQDA*
Ga0066709_1026468922	3300009137	Grasslands Soil	MPVARIPFWQLRRQGVVEEAIRGGNRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVCEPEGEDALEFRQDVQGEQ*
Ga0066709_1031797711	3300009137	Grasslands Soil	MALARIPFWRLRAHGVVEEAVRGGSRRRLIGHEWPLPEGVREGLRGLLEPLGFDLGRTVAVREPEGEDALE
Ga0114129_100170557	3300009147	Populus Rhizosphere	VSVATAVPSARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0114129_110947262	3300009147	Populus Rhizosphere	MPVTRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPEAVRERMRELLAPLGFDLGRPIFVREPEGEDALEFRQDA*
Ga0114129_119717103	3300009147	Populus Rhizosphere	VSLATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVTRSIIVRELGDDNALEFRQD*
Ga0075423_123443253	3300009162	Populus Rhizosphere	FWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSINVRELADDNTLEFRQD*
Ga0075423_123615253	3300009162	Populus Rhizosphere	FWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0105164_100146623	3300009777	Wastewater	VPTALIPFWRLRQHAVTEEAVRGGSRRRALDQSWPLPATVTERLRPLLEPLGFDVDRPVSVREPAGQDALEFTQDQ*
Ga0126384_1000503211	3300010046	Tropical Forest Soil	MPITRIPFWQLRRHGVVEEAVRGGHRRRIVGRDWPLPDAVRERVRELLEPLGFDVGRPILVREPDGEDALEFRQD*
Ga0126384_101554194	3300010046	Tropical Forest Soil	VSVATAVPFARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTLEFRQD*
Ga0126384_104346123	3300010046	Tropical Forest Soil	VVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRDLLEPLGFDVARSITVRELGDDNALEFQQD*
Ga0126373_103552862	3300010048	Tropical Forest Soil	VVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVARSITVRELGDDNALEFQQD*
Ga0134070_100015457	3300010301	Grasslands Soil	MPTMLVTRIPFWRLRQHGVVEEAVRGGSRRRIGGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
Ga0134088_100164993	3300010304	Grasslands Soil	MPTMLVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
Ga0134109_105051551	3300010320	Grasslands Soil	MPTMLVTRIPFWRLRQHGVVEEAVRGGSRRRIGGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDVGGDGD*
Ga0126376_101108604	3300010359	Tropical Forest Soil	VPSARIPFWQLRSHGVVEEAVRGGTRRRVVGRDWALPEAVREPLRALLEPLGFDVERSISVRELADENTLEFRQD*
Ga0126376_107054912	3300010359	Tropical Forest Soil	VPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVTRSIIVRELGDDNALEFRQD*
Ga0126376_109832574	3300010359	Tropical Forest Soil	VSVATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPESVREPLRALLEPLGFDVGRSISVREPEGGNA
Ga0126376_132030181	3300010359	Tropical Forest Soil	VSVATAVPFARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRSFLEPLGFDFDRSISVRELADDNTLEFRQD*
Ga0126372_102927822	3300010360	Tropical Forest Soil	VVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVARSIMVRELGDDNALEFRQD*
Ga0126381_1012486441	3300010376	Tropical Forest Soil	VSVATAVPFARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADDNTL
Ga0126383_109969622	3300010398	Tropical Forest Soil	VSVATAVPSARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVSRSISVRELADENTLEFRQD*
Ga0137389_107588122	3300012096	Vadose Zone Soil	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERVRPLLEPLGFDLDKPISVSEPTNEDALEFTQPE*
Ga0137383_105122611	3300012199	Vadose Zone Soil	MPTMLVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDG
Ga0137362_101701752	3300012205	Vadose Zone Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEGEDALEFRQDGDPAVV*
Ga0137376_107011932	3300012208	Vadose Zone Soil	MPVARVPFWQLRRHGVVEEAVRGGSRRRLVGREWPLPEAVREGLRALLEPLGFDLGRPISVREPDGEDALEFLQADVPEPPQAP*
Ga0137370_101571463	3300012285	Vadose Zone Soil	MPVARVPFWQLRRHGVVEEAVRGGSRRRLVGREWPLPEAVREGLRALLEPLGFDLGRPISVREPDGEDALEFLQADVPEPPEAP*
Ga0137361_100044568	3300012362	Vadose Zone Soil	MPTMPVTRVPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD*
Ga0137361_107692251	3300012362	Vadose Zone Soil	MTALARIPFWRLRAHGVVEEAVRGGSRRRQIGHEWPLPDGVRERMRGLLEPLGFDLARPVAVREPEGEDALEFSQ
Ga0137361_118024562	3300012362	Vadose Zone Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV*
Ga0137397_102021453	3300012685	Vadose Zone Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEGEDALEFRQDGGT*
Ga0137394_101644533	3300012922	Vadose Zone Soil	PFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRELLEPLGFELDRPILVREPEGEDALEFRQDGGT*
Ga0137394_102679212	3300012922	Vadose Zone Soil	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERMRPLLEPLGFDLARPVSVSEPAHQDALEFTQAE*
Ga0137394_110946822	3300012922	Vadose Zone Soil	MPVIRVPFWQLRRHGVVEEAVRGGTRRRIVGRDWLLPEAVRERMRELLEPLGFDLARPVSVREPEGEDALEFRQDDSPA*
Ga0137394_114734372	3300012922	Vadose Zone Soil	MPVARFPFWQLRRHGVVEEAIRGGSRRRIVGRDWMLPEAVRERMRELLEPLGFELGRPIVVREPEGEDALEFRQDGDPAVV*
Ga0137359_104508823	3300012923	Vadose Zone Soil	MPITRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQDGDPAVV*
Ga0126375_105778712	3300012948	Tropical Forest Soil	MPVTRIPFWRLRAQGVVEEAVRGGTRRRVTGHDWPLPNAVRDRLRAMLEPLGFDLGRPVSVREPEGEDTLEFSQD*
Ga0126369_117385231	3300012971	Tropical Forest Soil	VSVATAVPSARIPFWQLRRHGVVEEAVRGGTRRRVVGREWALPEAVREPLRALLEPLGFDVDRSISVRELADENTLEFRQD*
Ga0187779_105967042	3300017959	Tropical Peatland	MPVARIPFWRLRAQGVVEEAVRGGTRRRLTGQSWPLPETVRAGLRAVLEPLGFDLARPVSVGEPADEDALEFSQD
Ga0187776_105587451	3300017966	Tropical Peatland	VPVARLAFWELRRHNVAEEAVRGGVRRRIHDRAWPLPEAVRERLRVVLEPLGFDLARPVSVREPEGADALEFSQDEPRA
Ga0066655_100399062	3300018431	Grasslands Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRRRIGGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD
Ga0066667_100639343	3300018433	Grasslands Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD
Ga0066667_110310341	3300018433	Grasslands Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV
Ga0066667_111323602	3300018433	Grasslands Soil	MALARIPFWRLRAHGVVEEAVRGGSRRRLIGHEWPLPEGVREGLRGLLEPLGFDLGRTVAVREPEGE
Ga0066662_104964301	3300018468	Grasslands Soil	AERIITAMALARIPFWRLRAHGVVEEAVRGGSRRRQLGHEWPLPDGVRERMRGLLEPLGFDLARPVAVREPEGEDALEFSQDA
Ga0066669_100006035	3300018482	Grasslands Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVLERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDV
Ga0066669_101351402	3300018482	Grasslands Soil	MLVTRIPFWRLRQNGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD
Ga0066669_110208652	3300018482	Grasslands Soil	MARARIPFWRLRAHGVVEEAVRGGSRRRLIGHEWPLPEGVREGLRGLLEPLGFDLGRTVAVREPEGEDALEFSQDA
Ga0193725_10001216	3300019883	Soil	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPEPVRERLRPLLEPLGFDLARPVSVSEPAGQDALRFDQQDAAG
Ga0247671_10627591	3300024284	Soil	MPVTRVPFWRLRAQGVVEEAVRGGTRRRVRGHDWPLPEAVRDRMREVLEPLGFDLARPVSVREPEGEDALEFSQDEPGPGGECRG
Ga0209824_100128993	3300025173	Wastewater	VPTALIPFWRLRQHAVTEEAVRGGSRRRALDQSWPLPATVTERLRPLLEPLGFDVDRPVSVREPAGQDALEFTQDQ
Ga0207684_101772582	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVKERMRDLLEPLGFDLNRPISVSEPANQDALEFTQPE
Ga0209236_10350652	3300026298	Grasslands Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRCRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD
Ga0209761_10665572	3300026313	Grasslands Soil	MLVTRIPFWRLRQNGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLEPLGFELRRPILVSEPEDENALEFRQDDGGDGD
Ga0209471_11769602	3300026318	Soil	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRGLLEPLGFELDRPILVREPEGEDALEFRQDG
Ga0209471_12285652	3300026318	Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEFRQ
Ga0209470_11273881	3300026324	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVFERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDVIDG
Ga0209803_10021822	3300026332	Soil	MLVTRIPFWRLRQHGVVEEAVRGGSRCRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGADGD
Ga0209690_10457783	3300026524	Soil	MRRSSFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPEAVLERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDV
Ga0209160_10985563	3300026532	Soil	MPPMPVTRIPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLEPLGFELRRPILVSEPEDENALEFRQDDGGDGN
Ga0209058_10304192	3300026536	Soil	VTSRIPFWQLRRHGVVEEAVRGGSRRRIVGRDWPLPDAVFERVRELLEPLGFDLGRPIFVREPEGEDALEFRQDV
Ga0209689_10376714	3300027748	Soil	IPFWRLRQHGVVEEAVRGGSRRRIVGRDWPLPEPVRERMRGLLAPLGFDLMRPILVAEPEDENALEFRQDDGGDGD
Ga0209689_12285052	3300027748	Soil	MPVARIPFWQLRRQGVVEEAIRGGSRRRIVGRDWVLPEAMRDRMRELLEPLGFELGRPILVCEPEGEDALEFRQDVQGEQ
Ga0209689_12368812	3300027748	Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWALPEAVRDRMRELLEPLGFELGRPILVREPEGEDALEFRQDGDP
Ga0209814_100141694	3300027873	Populus Rhizosphere	VPATRIPFWQLRRHGVAEEAVRGGSRRRIVGRDWPLPDGVRERLRGLLEPIGFDLARPIVVREPHGEDALEFQQD
Ga0209283_102401422	3300027875	Vadose Zone Soil	VPIALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERMRNLLEPLGFDLDRPISVREPANQDALEFIQPE
Ga0209590_103070411	3300027882	Vadose Zone Soil	WPRPARSELASGSDRVPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERMRNLLEPLGFDLDRPISVREPANQDALEFIQPE
Ga0209382_103694464	3300027909	Populus Rhizosphere	VPLATPVPVTRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDAVREPLRGLLEPLGFDVTRSIIVRELGDDNALEFRQD
(restricted) Ga0255312_10904433	3300031248	Sandy Soil	MPRALIPFWRLRQHAASEEAVRGGSRRRAVDRSWPLPEAVTERLRPLLEPLGFDLARPITVSEPAGQDALQFDQPDPD
Ga0307469_106153032	3300031720	Hardwood Forest Soil	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPDAVRERMRDVLEPLGFDLDRPISVSEPANKDALEFTQPE
Ga0307469_108003392	3300031720	Hardwood Forest Soil	MPVTRVPFWRLRAQGVVEEAVRGGTRRRVRGHDWPLPEAVRDRMREVLEPLGFDLARPVSVREPEGEDALEFSQDEPGPGGECRGS
Ga0307469_118717901	3300031720	Hardwood Forest Soil	VPVALIPFWRLRQHAVSEEAVRGGSRRRALDRTWPLPEPVRERLRPLLEPLGFDLARPISVSEPPGQDALQFDQP
Ga0307469_125208602	3300031720	Hardwood Forest Soil	ARIPYWRLRAQAVAEEAVRGGTRRRLTEREWLLPEAVRDRLRDVLEPLGFDLARPVSVREAEGEDALEFSQDEGHKE
Ga0307468_1003717742	3300031740	Hardwood Forest Soil	VPLARIPYWRLRAQAVAEEAVRGGTRRRLTEREWLLPEAVRDRLRDVLEPLGFDLARPVSVREAEGEDALEFSQDEGNKE
Ga0307473_101644662	3300031820	Hardwood Forest Soil	MPVARIPFWQLRRHGVVEEAIRGGSRRRIVGRDWVLPEAVRERMRDLLEPLGFELGRPILVREPEGEDALEFRQDGDPAVV
Ga0307471_1000469434	3300032180	Hardwood Forest Soil	MPVARIPFWQLRRHGVVEEAVRGGSRRRIVGRDWVLPEAVRERMRTLLEPLGFELDRPILVREPEGEDALEFRQDGV
Ga0307471_1029298392	3300032180	Hardwood Forest Soil	MPTTRIPFWELRRHGVVEEAVRGGSRRRIVGRDWPLPEAVRERMGALLAPLGFDLGRPIVVREPDGEDALEFSQE
Ga0307471_1035581151	3300032180	Hardwood Forest Soil	AVPITRIPFWELRRHGVVEEAVRGGTRRRVVGRDWPLPDSVRERMRDLLEPLGFDVARPIMVRELEDQNALEFRQD
Ga0307472_1003288152	3300032205	Hardwood Forest Soil	MPVTRIPFWRLRSQGVAEEAVRGGSRRRLTGRDWPLPDEVRDRMRGVLEPLGFDLGRPVSVREPEGEDAREFSQD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters