Metagenome Family F045908

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045908
Family Type	Metagenome
Number of Sequences	152
Average Sequence Length	57 residues
Representative Sequence	VKKSTGRHPKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRKG
Number of Associated Samples	117
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.89 %
% of genes near scaffold ends (potentially truncated)	28.29 %
% of genes from short scaffolds (< 2000 bps)	78.95 %
Associated GOLD sequencing projects	106
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.026 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (39.474 % of family members)
Environment Ontology (ENVO)	Unclassified (45.395 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.658 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.41% β-sheet: 0.00% Coil/Unstructured: 70.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF00027	cNMP_binding	25.66
PF00011	HSP20	3.95
PF09723	Zn-ribbon_8	3.29
PF00118	Cpn60_TCP1	1.97
PF00483	NTP_transferase	1.97
PF00733	Asn_synthase	1.32
PF01841	Transglut_core	1.32
PF00216	Bac_DNA_binding	1.32
PF14534	DUF4440	1.32
PF13189	Cytidylate_kin2	1.32
PF01145	Band_7	1.32
PF00496	SBP_bac_5	1.32
PF00072	Response_reg	1.32
PF07690	MFS_1	0.66
PF00291	PALP	0.66
PF08241	Methyltransf_11	0.66
PF13649	Methyltransf_25	0.66
PF07077	DUF1345	0.66
PF07589	PEP-CTERM	0.66
PF01471	PG_binding_1	0.66
PF02313	Fumarate_red_D	0.66
PF02826	2-Hacid_dh_C	0.66
PF13518	HTH_28	0.66
PF01842	ACT	0.66
PF04972	BON	0.66
PF00676	E1_dh	0.66
PF11127	DUF2892	0.66
PF01434	Peptidase_M41	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	3.95
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.97
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	1.32
COG0465	ATP-dependent Zn proteases	Posttranslational modification, protein turnover, chaperones [O]	0.66
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.66
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.66
COG3080	Fumarate reductase subunit D	Energy production and conversion [C]	0.66
COG4291	Uncharacterized membrane protein	Function unknown [S]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	73.03 %
Unclassified	root	N/A	26.97 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	73.03 %
Unclassified	root	N/A	26.97 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.03 %
Unclassified	root	N/A	26.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	19.08 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	13.82 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.87 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19.08 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	13.82 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.26 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.32 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.66 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	19.08 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	12.50 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.26 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.32 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.66 %
candidate division NC10	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10	0.66 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	19.08 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	11.84 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.32 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.66 %
unclassified candidate division NC10	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10	0.66 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.84 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	4.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.32 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.66 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	0.66 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	26.97 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	19.08 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.84 %
Olavius sp. associated proteobacterium Delta 1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	4.61 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.32 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.66 %
candidate division NC10 bacterium CSP1-5	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	0.66 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.66 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2199352025\|deepsgr__Contig_167444	Not Available	781	Open in IMG/M
2209111019\|2221126068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300000550\|F24TB_10806338	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2337	Open in IMG/M
3300000559\|F14TC_100402295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1773	Open in IMG/M
3300001661\|JGI12053J15887_10490996	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	586	Open in IMG/M
3300002120\|C687J26616_10015117	All Organisms → cellular organisms → Bacteria	2974	Open in IMG/M
3300002122\|C687J26623_10045332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1185	Open in IMG/M
3300002124\|C687J26631_10023186	All Organisms → cellular organisms → Bacteria	2205	Open in IMG/M
3300002243\|C687J29039_10345032	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	511	Open in IMG/M
3300004633\|Ga0066395_10092160	Not Available	1443	Open in IMG/M
3300005178\|Ga0066688_10067081	All Organisms → cellular organisms → Bacteria	2120	Open in IMG/M
3300005181\|Ga0066678_10104583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1719	Open in IMG/M
3300005186\|Ga0066676_10302184	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1059	Open in IMG/M
3300005295\|Ga0065707_11155363	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	504	Open in IMG/M
3300005332\|Ga0066388_100193304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2651	Open in IMG/M
3300005332\|Ga0066388_105336734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	652	Open in IMG/M
3300005439\|Ga0070711_101248805	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300005450\|Ga0066682_10040211	All Organisms → cellular organisms → Bacteria	2797	Open in IMG/M
3300005467\|Ga0070706_100207063	All Organisms → cellular organisms → Bacteria	1832	Open in IMG/M
3300005468\|Ga0070707_100309785	All Organisms → cellular organisms → Bacteria	1534	Open in IMG/M
3300005468\|Ga0070707_101656475	Not Available	607	Open in IMG/M
3300005558\|Ga0066698_10165856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1499	Open in IMG/M
3300005586\|Ga0066691_10966436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	501	Open in IMG/M
3300005843\|Ga0068860_101733318	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300006175\|Ga0070712_100609592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	925	Open in IMG/M
3300006852\|Ga0075433_10270213	All Organisms → cellular organisms → Bacteria	1507	Open in IMG/M
3300006854\|Ga0075425_100050014	All Organisms → cellular organisms → Bacteria → Proteobacteria	4681	Open in IMG/M
3300006871\|Ga0075434_100278889	Not Available	1691	Open in IMG/M
3300006903\|Ga0075426_10144908	All Organisms → cellular organisms → Bacteria	1712	Open in IMG/M
3300006904\|Ga0075424_100798149	Not Available	1007	Open in IMG/M
3300007255\|Ga0099791_10145282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1106	Open in IMG/M
3300007255\|Ga0099791_10157996	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300007258\|Ga0099793_10006471	All Organisms → cellular organisms → Bacteria → Proteobacteria	4314	Open in IMG/M
3300007258\|Ga0099793_10243274	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	867	Open in IMG/M
3300007258\|Ga0099793_10380533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300007265\|Ga0099794_10123754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1303	Open in IMG/M
3300007265\|Ga0099794_10253099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	908	Open in IMG/M
3300007265\|Ga0099794_10325230	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	798	Open in IMG/M
3300009012\|Ga0066710_101683194	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300009038\|Ga0099829_10028169	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	3970	Open in IMG/M
3300009038\|Ga0099829_10274368	All Organisms → cellular organisms → Bacteria	1379	Open in IMG/M
3300009038\|Ga0099829_10897489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	735	Open in IMG/M
3300009088\|Ga0099830_11085630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	664	Open in IMG/M
3300009089\|Ga0099828_10524783	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1067	Open in IMG/M
3300009089\|Ga0099828_11808774	Not Available	536	Open in IMG/M
3300009090\|Ga0099827_10687969	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300009090\|Ga0099827_10813539	Not Available	809	Open in IMG/M
3300009090\|Ga0099827_11432486	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	601	Open in IMG/M
3300009090\|Ga0099827_11582176	Not Available	571	Open in IMG/M
3300009143\|Ga0099792_10522935	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → candidate division NC10 → unclassified candidate division NC10 → candidate division NC10 bacterium CSP1-5	746	Open in IMG/M
3300009177\|Ga0105248_11078916	Not Available	907	Open in IMG/M
3300009792\|Ga0126374_10069454	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1877	Open in IMG/M
3300010047\|Ga0126382_12266337	Not Available	524	Open in IMG/M
3300010358\|Ga0126370_10059632	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2471	Open in IMG/M
3300010359\|Ga0126376_10443471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1184	Open in IMG/M
3300010359\|Ga0126376_13177001	Not Available	508	Open in IMG/M
3300010360\|Ga0126372_10330191	Not Available	1357	Open in IMG/M
3300010360\|Ga0126372_11017261	All Organisms → cellular organisms → Bacteria	841	Open in IMG/M
3300010403\|Ga0134123_12926362	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300011269\|Ga0137392_10302935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1321	Open in IMG/M
3300011271\|Ga0137393_11666105	Not Available	527	Open in IMG/M
3300012096\|Ga0137389_11000552	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	717	Open in IMG/M
3300012189\|Ga0137388_11598988	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300012201\|Ga0137365_10308338	Not Available	1172	Open in IMG/M
3300012202\|Ga0137363_10014847	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	5089	Open in IMG/M
3300012202\|Ga0137363_10047679	All Organisms → cellular organisms → Bacteria	3055	Open in IMG/M
3300012202\|Ga0137363_10677235	Not Available	873	Open in IMG/M
3300012202\|Ga0137363_11217753	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300012203\|Ga0137399_10233529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1504	Open in IMG/M
3300012204\|Ga0137374_10047554	All Organisms → cellular organisms → Bacteria	4459	Open in IMG/M
3300012205\|Ga0137362_11623351	Not Available	533	Open in IMG/M
3300012206\|Ga0137380_10162165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2038	Open in IMG/M
3300012206\|Ga0137380_10477853	Not Available	1100	Open in IMG/M
3300012210\|Ga0137378_10194692	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1887	Open in IMG/M
3300012357\|Ga0137384_10063057	All Organisms → cellular organisms → Bacteria	3074	Open in IMG/M
3300012361\|Ga0137360_10154697	All Organisms → cellular organisms → Bacteria	1821	Open in IMG/M
3300012362\|Ga0137361_11559751	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300012363\|Ga0137390_11908106	Not Available	522	Open in IMG/M
3300012685\|Ga0137397_10004793	All Organisms → cellular organisms → Bacteria	9375	Open in IMG/M
3300012917\|Ga0137395_10202379	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300012918\|Ga0137396_10051371	All Organisms → cellular organisms → Bacteria	2829	Open in IMG/M
3300012922\|Ga0137394_10208393	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300012925\|Ga0137419_10018396	All Organisms → cellular organisms → Bacteria → Proteobacteria	4016	Open in IMG/M
3300012925\|Ga0137419_10222401	Not Available	1409	Open in IMG/M
3300012925\|Ga0137419_10364943	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M
3300012929\|Ga0137404_10878260	Not Available	817	Open in IMG/M
3300012929\|Ga0137404_11153516	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	712	Open in IMG/M
3300012929\|Ga0137404_11632203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	598	Open in IMG/M
3300012944\|Ga0137410_10906542	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	746	Open in IMG/M
3300012944\|Ga0137410_11296207	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	630	Open in IMG/M
3300013296\|Ga0157374_12663233	Not Available	528	Open in IMG/M
3300014885\|Ga0180063_1008689	All Organisms → cellular organisms → Bacteria	2717	Open in IMG/M
3300015264\|Ga0137403_10082180	All Organisms → cellular organisms → Bacteria	3253	Open in IMG/M
3300015357\|Ga0134072_10218988	Not Available	669	Open in IMG/M
3300015371\|Ga0132258_10120594	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	6231	Open in IMG/M
3300015371\|Ga0132258_11031476	All Organisms → cellular organisms → Bacteria	2079	Open in IMG/M
3300015372\|Ga0132256_102741536	Not Available	592	Open in IMG/M
3300017657\|Ga0134074_1362632	Not Available	536	Open in IMG/M
3300018063\|Ga0184637_10548464	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300018063\|Ga0184637_10641686	Not Available	592	Open in IMG/M
3300018078\|Ga0184612_10373036	Not Available	721	Open in IMG/M
3300018433\|Ga0066667_10383625	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300019789\|Ga0137408_1239341	Not Available	930	Open in IMG/M
3300021090\|Ga0210377_10131536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1647	Open in IMG/M
3300021560\|Ga0126371_10743303	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1128	Open in IMG/M
3300021560\|Ga0126371_11309756	Not Available	858	Open in IMG/M
3300025159\|Ga0209619_10088690	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300025160\|Ga0209109_10218877	Not Available	933	Open in IMG/M
3300025160\|Ga0209109_10295935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	774	Open in IMG/M
3300025318\|Ga0209519_10295709	Not Available	940	Open in IMG/M
3300025318\|Ga0209519_10417233	Not Available	765	Open in IMG/M
3300025322\|Ga0209641_10061311	All Organisms → cellular organisms → Bacteria	2895	Open in IMG/M
3300025325\|Ga0209341_11110158	Not Available	570	Open in IMG/M
3300026313\|Ga0209761_1156261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1069	Open in IMG/M
3300026329\|Ga0209375_1053304	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2004	Open in IMG/M
3300026334\|Ga0209377_1040634	All Organisms → cellular organisms → Bacteria	2143	Open in IMG/M
3300026340\|Ga0257162_1045163	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	555	Open in IMG/M
3300026358\|Ga0257166_1011301	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300026360\|Ga0257173_1060590	Not Available	548	Open in IMG/M
3300026371\|Ga0257179_1000902	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1943	Open in IMG/M
3300026446\|Ga0257178_1032809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	650	Open in IMG/M
3300026482\|Ga0257172_1023675	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1091	Open in IMG/M
3300026498\|Ga0257156_1014098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1549	Open in IMG/M
3300026524\|Ga0209690_1124744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1006	Open in IMG/M
3300027654\|Ga0209799_1069419	Not Available	792	Open in IMG/M
3300027654\|Ga0209799_1075591	Not Available	759	Open in IMG/M
3300027655\|Ga0209388_1194353	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300027671\|Ga0209588_1192303	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	638	Open in IMG/M
3300027846\|Ga0209180_10089865	All Organisms → cellular organisms → Bacteria	1742	Open in IMG/M
3300027846\|Ga0209180_10149431	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1346	Open in IMG/M
3300027875\|Ga0209283_10173666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1430	Open in IMG/M
3300027882\|Ga0209590_10052788	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2273	Open in IMG/M
3300027903\|Ga0209488_10098783	All Organisms → cellular organisms → Bacteria	2186	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1021096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1341	Open in IMG/M
(restricted) 3300031197\|Ga0255310_10009357	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2523	Open in IMG/M
3300031231\|Ga0170824_112769555	Not Available	562	Open in IMG/M
3300031231\|Ga0170824_113839162	All Organisms → cellular organisms → Bacteria	1982	Open in IMG/M
3300031446\|Ga0170820_13519817	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1005	Open in IMG/M
3300031446\|Ga0170820_15010836	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1826	Open in IMG/M
3300031469\|Ga0170819_11136161	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031474\|Ga0170818_101249381	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Olavius sp. associated proteobacterium Delta 1	1681	Open in IMG/M
3300031572\|Ga0318515_10317419	Not Available	836	Open in IMG/M
3300031740\|Ga0307468_101948110	Not Available	561	Open in IMG/M
3300031945\|Ga0310913_10944647	Not Available	606	Open in IMG/M
3300031965\|Ga0326597_10006954	All Organisms → cellular organisms → Bacteria	15431	Open in IMG/M
3300031965\|Ga0326597_10136899	All Organisms → cellular organisms → Bacteria → Proteobacteria	2939	Open in IMG/M
3300031965\|Ga0326597_10195702	All Organisms → cellular organisms → Bacteria	2375	Open in IMG/M
3300032060\|Ga0318505_10180035	Not Available	986	Open in IMG/M
3300032180\|Ga0307471_100232870	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300032205\|Ga0307472_101334616	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300033814\|Ga0364930_0032842	All Organisms → cellular organisms → Bacteria	1756	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.76%
Host-Associated	Host-Associated	7.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.47%
Plants	Host-Associated → Plants	7.24%
Aquatic	Environmental → Aquatic	3.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.82%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.26%
Sediment	Environmental → Aquatic → Sediment	2.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.97%
Freshwater	Environmental → Aquatic → Freshwater	0.66%
Floodplain	Environmental → Terrestrial → Floodplain	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	12.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.61%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.63%
Sand	Environmental → Terrestrial → Soil → Sand	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.32%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	53.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	12.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.95%
Unclassified	Environmental → Terrestrial → Soil → Loam → Unclassified	3.95%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.63%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.32%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	39.47%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.95%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.95%
Soil	Environmental → Terrestrial → Soil → Loam → Unclassified → Soil	3.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.29%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.29%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.29%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.97%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.97%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.32%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	1.32%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.32%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.66%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.66%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.66%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.66%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2199352025	Soil microbial communities from Rothamsted, UK, for project Deep Soil - DEEP SOIL	Environmental	Open in IMG/M
2209111019	Grass soil microbial communities from Rothamsted Park, UK - FP1 and FP2 (Mercury 0.2g/kg) assembled	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002120	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2	Environmental	Open in IMG/M
3300002122	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_2	Environmental	Open in IMG/M
3300002124	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_3	Environmental	Open in IMG/M
3300002243	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014885	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10D	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015357	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_0_1 metaG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300017657	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015	Environmental	Open in IMG/M
3300018063	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025159	Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 3	Environmental	Open in IMG/M
3300025160	Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 2	Environmental	Open in IMG/M
3300025318	Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1	Environmental	Open in IMG/M
3300025322	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1 (SPAdes)	Environmental	Open in IMG/M
3300025325	Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 13_2 (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026358	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-B	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026371	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300026524	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027671	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031197 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033814	Sediment microbial communities from East River floodplain, Colorado, United States - 55_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
deepsgr_02806880	2199352025	Soil	VKKITGRHSKTLSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRKG
2221865322	2209111019	Grass Soil	VKKITGRHSKTLSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG
F24TB_108063383	3300000550	Soil	LAWHVKKNTGRHRKAPSLYRLAFXXXXXXXXXXKPAELAEKANQKAGARPKKAKKESRRKG*
F14TC_1004022952	3300000559	Soil	LAWHVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKANQKAGARPKKAKKESRRKG*
JGI12053J15887_104909962	3300001661	Forest Soil	VKKSTGKHSKALSLYRLAFEDAVSGLIKAKQADISDISEKATQKVGARPKKTKKGSRRNG
C687J26616_100151174	3300002120	Soil	VKKNTGRNRKALSLYRLAFEDAVSGLLSAKPTDLSEKAARTAGARPKKGKKGSRRKG*
C687J26623_100453323	3300002122	Soil	VKKHTGRHRKTLSLYRLAFEDAVSGLLSAKPADISEKAARKAGARPTKAKKGSRRKG*
C687J26631_100231861	3300002124	Soil	VKKNTGRHRKALSLYRLAFEDAVSGLLSAKPADLSEKAARTAGARPKKGKKGSRRKG*
C687J29039_103450322	3300002243	Soil	VKKNTGRNRKALSLYRLAFEDAVSGLLSAKPTDLSEKAARTAGARPK
Ga0066395_100921603	3300004633	Tropical Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0066688_100670812	3300005178	Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKTKKGSRRNG*
Ga0066678_101045833	3300005181	Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKAKNGSRRKG*
Ga0066676_103021843	3300005186	Soil	MKKSTGRHRKAPSLYRLAFEDAVSGLIKAMPADISEKAARKVGARPKKAKNGSRRKG*
Ga0065707_111553632	3300005295	Switchgrass Rhizosphere	HVKNSTGRHDKAPSLYRLAFEEAVSGLLSAKPADLSEKAPQKAGARPKKAKKGSRRKG*
Ga0066388_1001933044	3300005332	Tropical Forest Soil	MKKNTGRPRKVLSLYRLAFEEVVSSLRKAKPADTSKKVAQRAGTRPKKAKKGPSRKG*
Ga0066388_1053367341	3300005332	Tropical Forest Soil	VKKNTRRRSKALSLYRLAFEDAVYDLLKVKSADIATKAAQKGEARPKEAKKGSKRKG*
Ga0070711_1012488052	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	VKKSTGRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGTRPKTAKKGSRRKG*
Ga0066682_100402113	3300005450	Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAAQKVGARPKKTKKGSRRNG*
Ga0070706_1002070633	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKTAKKESRRKG*
Ga0070707_1003097853	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKKNTGRHRKAPSLYRLAFEDAVSDLLKVKPADTAETAAQKAEARPKKAKKGSRRKG*
Ga0070707_1016564752	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	VKKNTGGHRRTLSLYRLAFEEAVSGLLSAKPADLSEKAARKAGARPKKAKKGSRRKG*
Ga0066698_101658561	3300005558	Soil	MKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISEKAARKVGARPKKAKNGSRRKG*
Ga0066691_109664362	3300005586	Soil	MKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADSSQNVAQKVGARPK
Ga0068860_1017333183	3300005843	Switchgrass Rhizosphere	LAWQVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELSEKANQKAGARPKTAKKESRRKGWPRPDRGLPQAVILA
Ga0070712_1006095921	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	RKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGTRPKTAKKGSRRKG*
Ga0075433_102702132	3300006852	Populus Rhizosphere	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKAAQKAGARPKKAKKESRRKG*
Ga0075425_1000500148	3300006854	Populus Rhizosphere	LAWHVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKAAQKAGARPKKAKKESRRKG*
Ga0075434_1002788891	3300006871	Populus Rhizosphere	NTGRHRKAPSLYRLAFEDVVSGLLSAKPADLSEKANQKTGARPKKAKKESRRKG*
Ga0075426_101449082	3300006903	Populus Rhizosphere	LAWHVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0075424_1007981491	3300006904	Populus Rhizosphere	LAWHVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKANQKTGARPKKAKKESRRKG*
Ga0099791_101452822	3300007255	Vadose Zone Soil	MKKSTGRHRKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKT
Ga0099791_101579962	3300007255	Vadose Zone Soil	VKKNTGRHSKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0099793_100064717	3300007258	Vadose Zone Soil	VKKSTGKHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGPRPKKTKKGSRRNG*
Ga0099793_102432742	3300007258	Vadose Zone Soil	VKKSTGRHPKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRKG*
Ga0099793_103805332	3300007258	Vadose Zone Soil	VKKSTGRHPKAPSLYRLAFEDAVSGLIKAKQADISDKAVQKVGAQPKRAKKGSRRKG*
Ga0099794_101237542	3300007265	Vadose Zone Soil	VKKSTGRHRKALSLYRLAFEDAVFGLIKAKQADISENVAQKVGARSKKAKKGSRRKG*
Ga0099794_102530992	3300007265	Vadose Zone Soil	VKKNTGRHSKAPSLYRLAFEEVVSGLLSAKPVDLSEKAAQKAGARPKKAKKESRRKG*
Ga0099794_103252302	3300007265	Vadose Zone Soil	VKKNTGRDRKAPSLYRLAFEDVVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRKG*
Ga0066710_1016831941	3300009012	Grasslands Soil	KAPSLYRLAFEDAVSGLIKAKPADISEKAAQKPGARPKKAKKGSRRKG
Ga0099829_100281693	3300009038	Vadose Zone Soil	VKKITGRHSKAPSLYRLAFEEAVSALIKAKQADISENVAQKVGARPKKAKKGSRQKG*
Ga0099829_102743682	3300009038	Vadose Zone Soil	MRRGRHWHVKKKSTGRHRKAPSLYRLAFEDAVSGLIKAKPADISDKAAQKVGARPKKAKNGSRRKG*
Ga0099829_108974891	3300009038	Vadose Zone Soil	VKKITGRHRKAPSLYRLAFEDAVFGLIKAKQADISENVAQKVGARFKKAKKGSRRKG*
Ga0099830_110856301	3300009088	Vadose Zone Soil	VKKNTGRHSKTFSLYRLAFEEVVCGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0099828_105247831	3300009089	Vadose Zone Soil	VKKNTGGHRRTLSLYRLAFEEAVSGLLSAKPAHLSEKAARKAGARPKKATKGSRRKG*
Ga0099828_118087742	3300009089	Vadose Zone Soil	VKKISGRHRKAPSLYRLAFEDAVSALIKAKQLDISENVAHKVGARPKKVKKGSRRKG*
Ga0099827_106879691	3300009090	Vadose Zone Soil	VKKITRHSKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKVGARPKKAKKGSR
Ga0099827_108135392	3300009090	Vadose Zone Soil	VKKITGRHSKTPSLYRLAFEEAVSGLIKAKQADISEKAAQKVGARPKKAKKGSRRKG*
Ga0099827_114324861	3300009090	Vadose Zone Soil	VKKITGRHRKAPSLYRLAFEDAVSGLIKAKQADISENVAQKVGARSKKAKKGSRRKG*
Ga0099827_115821761	3300009090	Vadose Zone Soil	TGKHRRTLSLYRLAFEEAVSGLLSAKPADLSGKAARKAGARPKKAKKGSRRKG*
Ga0099792_105229351	3300009143	Vadose Zone Soil	KAPSLYRLAFEEAVSRLLSEKPAAISAKAAQKAGARPKKAQKGSRRKG*
Ga0105248_110789161	3300009177	Switchgrass Rhizosphere	KAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKW*
Ga0126374_100694541	3300009792	Tropical Forest Soil	KKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0126382_122663371	3300010047	Tropical Forest Soil	LAWHVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSENAAQKAGARPKKAKKESRRKG*
Ga0126370_100596324	3300010358	Tropical Forest Soil	MKKNTGRPRKVLSLYRLAFEEVVSSLRKAKPADTSKKVAQRADTRPKKAKKGPSRKG*
Ga0126376_104434711	3300010359	Tropical Forest Soil	KVLSLYRLAFEEVVSSLRKAKPADTSKKVAQRADTRPKKARKGPSRKG*
Ga0126376_131770012	3300010359	Tropical Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVCGLLSAKPADLSEKAAQKAGARLKKAKKESRRKG*
Ga0126372_103301911	3300010360	Tropical Forest Soil	VKKNTGKHKAPSLYRLAFEDAVSGLLSAKPADLSENAAEKVGAQPKKAKKGSGRKR*
Ga0126372_110172612	3300010360	Tropical Forest Soil	MKKNTGRPRKVLSLYRLAFEEVVSSLRKAKPADTSKKVAQRADTRPKKARKGPSRKG*
Ga0134123_129263621	3300010403	Terrestrial Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAEFSEKAIQKAGARPKTAKKGSRRK
Ga0137392_103029352	3300011269	Vadose Zone Soil	MRRGRHWHVKKKSTGRHRKAPSLYRLAFEEAVSGLIKAKPADISDKAAQKVGARPKKAKNGSRRKG*
Ga0137393_116661052	3300011271	Vadose Zone Soil	VKKKSTGRHRKAPSLYRLAFEDAVSGLIKAKPADISDKAAQKVGARPKKAKNGSRRKG*
Ga0137389_110005521	3300012096	Vadose Zone Soil	VKKITGRHRKAQSLYRLAFEDAVSGLIKAKPADISEKAARKVGARPKKAKKGSRRK
Ga0137388_115989882	3300012189	Vadose Zone Soil	KRSTGRHSKAPSLYRLAFEDAVSGLIKAKQADISEKAAQKVGARPKKTKKGSRRKE*
Ga0137365_103083383	3300012201	Vadose Zone Soil	VKKNTGKHRRTLSLYRLAFEEAVSGLLSAKPADLSEKAAQKAGAQSKKAKKGSRRKR*
Ga0137363_100148471	3300012202	Vadose Zone Soil	VKKNTGRHSKTFSLYRLAFEEVVCGLLSAKPADLSGKAAQKAGARPKKAKKESRRKG*
Ga0137363_100476796	3300012202	Vadose Zone Soil	VKKHTGRHRGTLSLYRLAFEEAVSGLLSAKPADLSEKAARKAGARPKKAKKGSRRKG*
Ga0137363_106772352	3300012202	Vadose Zone Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKAAQKAGARPKKATKESRRKG*
Ga0137363_112177531	3300012202	Vadose Zone Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGPRPKKTKKGSRRNG*
Ga0137399_102335293	3300012203	Vadose Zone Soil	VKKSTGRHPKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG*
Ga0137374_100475545	3300012204	Vadose Zone Soil	VKKNAGRHRKAPSLYRLAFEEVVSGLLSAMPADLSEKAAQKAGARPKKVKKESRRKG*
Ga0137362_116233512	3300012205	Vadose Zone Soil	VKKITGRHRKAPSLYRLAFEDAVSGLIKAKQADLSEKAARKVGPRPKKTKKGSRRNG*
Ga0137380_101621654	3300012206	Vadose Zone Soil	VKKNTGRHGKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGAQSKKARKGSRRKR*
Ga0137380_104778531	3300012206	Vadose Zone Soil	VKKITRHSKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKVGARPKKAKKGSRRKG*
Ga0137378_101946925	3300012210	Vadose Zone Soil	VKKNTGRHGKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGAQSKKAKKGSRRKR*
Ga0137384_100630577	3300012357	Vadose Zone Soil	VKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISEKAARKVGARPKKAKKGSRRKG*
Ga0137360_101546974	3300012361	Vadose Zone Soil	MKKSTGRHRKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGPRPKKTKKGSRRNG*
Ga0137361_115597511	3300012362	Vadose Zone Soil	RHPKAPSLYRLAFEDAVSGLIKAKPADISEKAAQKPGARPKKAKKGSRRKG*
Ga0137390_119081061	3300012363	Vadose Zone Soil	VKRSTGRHSKAPSLYRLAFEDAVSGLIKAKQADISEKAAQKAGARPKKTKKGSRRKG*
Ga0137397_100047939	3300012685	Vadose Zone Soil	VKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISDKAVQKVGAQPKRAKKGSRRKG*
Ga0137395_102023793	3300012917	Vadose Zone Soil	VKKSTGRHSKALSLYRLAYEDAVSGLIKAKQADLSEKAAQKVGAQPKKTKKGSRRNG*
Ga0137396_100513713	3300012918	Vadose Zone Soil	VKKSTGRHRKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKTKKGSRRNG*
Ga0137394_102083932	3300012922	Vadose Zone Soil	VKKSTGRHRKVPSLYRLAFEDAVSGLIKRKQADISDKAVQKVGAQPKRAKKGSRRKG*
Ga0137359_102302431	3300012923	Vadose Zone Soil	APSLYRLAFEEAVSALIKAKQAEFSENVAQKVGARPKKAKKGSRQKG*
Ga0137419_100183961	3300012925	Vadose Zone Soil	MKKSTGRHRKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKTKKGSRRNG*
Ga0137419_102224012	3300012925	Vadose Zone Soil	VKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISDISEKAAQKAGARPKKTKKGSRRNG
Ga0137419_103649431	3300012925	Vadose Zone Soil	VKKSTGRHRKAPSLYRLAFEDTVSGLIKAKQADISENVAQKVGARPKKAKKGSRQKG*
Ga0137404_108782603	3300012929	Vadose Zone Soil	VKKITGRHSKTFSLYRLAFEEAVSGLLSAKPADLSEKAAQKAAARPKKTKKGSRRKG*
Ga0137404_111535161	3300012929	Vadose Zone Soil	VKKITGRHRKAPSLYRLAFEDAVFGLIKAKQADISENVAQKVGARSKKAKKGSRRKG*
Ga0137404_116322031	3300012929	Vadose Zone Soil	VKKNTGRHSKAPSLYRLAFEEVVCGLLSAKPADLSEKAAQKAGARPKKAKKESRRK
Ga0137410_109065422	3300012944	Vadose Zone Soil	VKKSTGRHRKAPSLYRLAFEDTVSGLIKAKQADISENVAQKVGARPKKAKKGSRRKG*
Ga0137410_112962071	3300012944	Vadose Zone Soil	VKKITGRHSKTLSLYRLAFEEAVSGLLSAKPADLSEKATQKAGARPKKAKKGSRRKG*
Ga0157374_126632331	3300013296	Miscanthus Rhizosphere	KAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRQKG*
Ga0180063_10086892	3300014885	Soil	VKKNTGRHRKAPSLYRLAFEDAVSGLLSAKPADISAKAARKAGARPKKAKKGSRRKG*
Ga0137403_100821804	3300015264	Vadose Zone Soil	VKKSSGRHRKVPSLYRLAFEDAVSGLIKRKQADISDKAVQKVGAQPKRAKKGSRRKG*
Ga0134072_102189882	3300015357	Grasslands Soil	SKALSLYRLAFEDAVSGLIKAKQADLSEKAAQKVGARPKKTKKGSRRNG*
Ga0132258_101205943	3300015371	Arabidopsis Rhizosphere	VKKITGRHSKTLSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRRG*
Ga0132258_110314762	3300015371	Arabidopsis Rhizosphere	VKKNTGRHRKAPSLYRIAFEEVVSGLLSAKPAELAEKANQKAGARPKKAKKESRRKG*
Ga0132256_1027415362	3300015372	Arabidopsis Rhizosphere	VKKITGRHSKTLSLYRLAFEDAVSGLLSAKPADLSEKAAQKAGARPK
Ga0134074_13626321	3300017657	Grasslands Soil	VKKNTGRHSKAPSLYRLAFEDAVSGLIKAKQADLSEKAAQKVGARPKKTKKGSRRNG
Ga0184637_105484641	3300018063	Groundwater Sediment	VKKNTGRHSKALSLYRLAFEEAVSGLLSAKPADISEKAARKAGARAKKAKKGSRRKG
Ga0184637_106416861	3300018063	Groundwater Sediment	VKKNTGRHSKAPSLYRLAFEDAVSDLLKVKPADTAETAAQKAEARPKKAKKG
Ga0184612_103730361	3300018078	Groundwater Sediment	VKKNTGRHSKALSLYRLAFEDAVSSLLSAKPADISEKAARKAGARAKKAKKGSRRKG
Ga0066667_103836251	3300018433	Grasslands Soil	MKKSTGRHREAPSLYRFAFEDAVSGLIKAMPADISEKAARKVGARPKKAKNGSRRKG
Ga0137408_12393412	3300019789	Vadose Zone Soil	RKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG
Ga0210377_101315364	3300021090	Groundwater Sediment	VKKNTGRHRKALSLYRLAFEDAVSGLLSAKPADLSEKAVGKAGARRKKAKKGSR
Ga0126371_107433034	3300021560	Tropical Forest Soil	MKKNTGRPRKVLSLYRLAFEEVVSSLRKAKPADTSKKVAQRADTRPKKARKGPSRKG
Ga0126371_113097562	3300021560	Tropical Forest Soil	LAWYVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRK
Ga0209619_100886901	3300025159	Soil	VKKNTGRHRKALSLYRLAFEDAVSGLLSAKPADLSEKAARTAGARPKKGKK
Ga0209109_102188771	3300025160	Soil	GRHPKTLSLYRLAFEDAVSGLLSAKPAYISEKGGRKAGPRPKKTKKGSRRKGSLGAA
Ga0209109_102959351	3300025160	Soil	MRRGRHPTYAPGARQARGRHRKALSLYRLAFEDAVSGLLSAKPAYISEKGGRKAG
Ga0209519_102957091	3300025318	Soil	HPTHRKTLSLYRLAFEDAVSGLLSAKPAYISEKGARKVGARPKKTKKGSRRKGSQGP
Ga0209519_104172331	3300025318	Soil	GHSVLKALSLYRLAFEDAVSGLLSAKPTDLSEKAARTAGARPKKGKKGSRRKG
Ga0209641_100613112	3300025322	Soil	MRRGRHPTYAPGARQARGRHRKALSLYRLAFEDAVSGLLSAKPAYISEKGGRKAGARPKKTKKGSRRKGSRGRLGVV
Ga0209341_111101581	3300025325	Soil	CETYGGRVGWVMRRGRHPTYAPGARQARGRHRKALSLYRLAFEDAVSGLLSAKPAYISEKGGRKAGARPKKTKKGSRRKGSRGRLGVV
Ga0209761_11562612	3300026313	Grasslands Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKTKKGSRRNG
Ga0209375_10533043	3300026329	Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAAQKVGARPKKTKKGSRRNG
Ga0209377_10406343	3300026334	Soil	MKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISEKAARKVGARPKKAKNGSRRKG
Ga0257162_10451631	3300026340	Soil	VKKHTGRHRRALSLYRLAFEEAVSGLLSAKPSDLSGKAARKGGARPKKATKGS
Ga0257166_10113012	3300026358	Soil	VKRSTGRHSKAPSLYRLAFEDAVSGLIKAKQADISEKAAQKVGARPKKTKKGSRRKE
Ga0257173_10605901	3300026360	Soil	VKKSTGRHRKAPSLYRLAFEEALSGPIKRKQADISDKAVQKVGARPKKAKKGSRRKG
Ga0257179_10009023	3300026371	Soil	VKKISGRHRKAPSLYRLAFEDAVSALIKAKQLDISENVAHKVGARPKKVKKGSRRKG
Ga0257178_10328091	3300026446	Soil	VKKSTGRHRKAPSLYRLAFEDAVSGLIKAKQADISEKAAQKAGARPKKTKKGSRRKG
Ga0257172_10236753	3300026482	Soil	VKKSTGRHSKAPSLYRLAFEDAVSGLIKAKQADISEKAAQKVGARPKKGK
Ga0257156_10140982	3300026498	Soil	VKKNTGRHSKVPSLYRLAFEEVVSGLLSAKPADLSEKAAPKAGARPKKTKKGSRRKG
Ga0209690_11247442	3300026524	Soil	VKKSTGRHSKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGARPKKTKKGSRRN
Ga0209799_10694191	3300027654	Tropical Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVCGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG
Ga0209799_10755912	3300027654	Tropical Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARLKKAKKESRRKG
Ga0209388_11943532	3300027655	Vadose Zone Soil	MKKSTGRHRKALSLYRLAFEDAVSGLIKAKQADLSEKAARKVGPRPKKTK
Ga0209588_11923031	3300027671	Vadose Zone Soil	VKKNTGRDRKAPSLYRLAFEDVVSGLLSAKPADLSEKAAQKAGARPKKAKKGSRRKG
Ga0209180_100898652	3300027846	Vadose Zone Soil	VKKKSTGRHRKAPSLYRLAFEDAVSGLIKAKPADISDKAAQKVGARPKKAKNGSRRKG
Ga0209180_101494312	3300027846	Vadose Zone Soil	VKKITGRHSKAPSLYRLAFEEAVSALIKAKQADISENVAQKVGARPKKAKKGSRQKG
Ga0209283_101736663	3300027875	Vadose Zone Soil	VKKITGRHRKAPSLYRLAFEDAVFGLIKAKQADISENVAQKVGARFKKAKKGSRRKG
Ga0209590_100527881	3300027882	Vadose Zone Soil	VKKITRHSKAPSLYRLAFEDAVSGLLSAKPADLSEKAAQKVGARPKKAKKGSRQKA
Ga0209488_100987832	3300027903	Vadose Zone Soil	VKRSTGRHSKAPSLYRLAFEDAVSGLIKAKPADISDKAAQKVGARPKKAKNGSRRKG
(restricted) Ga0255311_10210961	3300031150	Sandy Soil	VKRSTGRHSRAPSLYRLAFEDAVSGLIKAKQADISEKAAQKAGARPKKTKKGSRRKE
(restricted) Ga0255310_100093574	3300031197	Sandy Soil	VKKSTGRHRKAPSLYRLAFEEALSGLIKRKQADISDKAVQKVGARPKKAKKGSRRKRGSQGRLGVA
Ga0170824_1127695551	3300031231	Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKAAQKAGARPKKAKKESRRKG
Ga0170824_1138391623	3300031231	Forest Soil	VKKSTDRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGARPKTAKKGPRRKG
Ga0170820_135198172	3300031446	Forest Soil	VKKSTGRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGARPKTAKKGSRRKG
Ga0170820_150108363	3300031446	Forest Soil	VKKNTGRHRKAPSLYRLAFEEVVSRLLSAKPAELAEKANQRAGARPKKAKKESRRKG
Ga0170819_111361611	3300031469	Forest Soil	VKKSTGRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGARPKTAKKGPRRKG
Ga0170818_1012493812	3300031474	Forest Soil	VKKSTDRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGARPKTAKKGSRRKG
Ga0318515_103174192	3300031572	Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESSRKG
Ga0307468_1019481101	3300031740	Hardwood Forest Soil	SHCRLAWQVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPAELAEKAAQKAGARPKKAKKESRRKG
Ga0310913_109446471	3300031945	Soil	HVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG
Ga0326597_1000695417	3300031965	Soil	VKKISGRHRKALSLYRLAFEDAVSGLLSAKPADLSEKAAQKVGARPKKAKTGSRRKV
Ga0326597_101368993	3300031965	Soil	VKKNTGRHRKVPSLYRLAFEDAVSGLLSAKPADLSEKAARKAGAPPKKAKKGSRRKR
Ga0326597_101957022	3300031965	Soil	MRRGRHPTHRKTLSLYRLAFEDAVSGLLSAKPAYISEKGARKVGARPKKTKKGSRRKGSQGP
Ga0318505_101800352	3300032060	Soil	VKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPK
Ga0307471_1002328703	3300032180	Hardwood Forest Soil	RVKKNTGRHRKAPSLYRLAFEEVVSGLLSAKPADLSEKAAQKAGARPKKAKKESRRKG
Ga0307472_1013346163	3300032205	Hardwood Forest Soil	VKKSTGRHDKAPSLYRLAFEEVVSGLLSAKPAELSEKAIQKAGTRPKT
Ga0364930_0032842_1589_1756	3300033814	Sediment	HRKALSLYRLAFEDAVSGLLSAKPADISEKAARKAGARPKKVKKGSRRKGVAKGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters