Metagenome / Metatranscriptome Family F045776

Basic Information
Family ID	F045776
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	46 residues
Representative Sequence	VRRLPATTVYYGLSFGLRLPTWVVMSVYLVSELHLSPLQLVLMG
Number of Associated Samples	130
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	55.92 %
% of genes near scaffold ends (potentially truncated)	99.34 %
% of genes from short scaffolds (< 2000 bps)	97.37 %
Associated GOLD sequencing projects	126
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (87.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.026 % of family members)
Environment Ontology (ENVO)	Unclassified (30.263 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.632 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1OU_00395130 2AL20A1W_12245903 3JGI1027J12803_1096092321 4JGI10216J12902_1040570561 5JGI10216J12902_1081244272 6JGI10216J12902_1127028381 7Ga0063454_1001111293 8Ga0062590_1018635101 9Ga0062595_1008359092 10Ga0066807_10381561 11Ga0066674_105293572 12Ga0066690_109293731 13Ga0066388_1018988002 14Ga0070677_105788721 15Ga0070682_1017984351 16Ga0070667_1015525232 17Ga0070701_100904101 18Ga0070700_1018497682 19Ga0070708_1006403592 20Ga0070708_1007361381 21Ga0070681_119127902 22Ga0066695_106267731 23Ga0066692_101504311 24Ga0066698_110271212 25Ga0066670_104977472 26Ga0068855_1002396321 27Ga0068855_1022141082 28Ga0068857_1025496741 29Ga0068856_1021565152 30Ga0068856_1023036252 31Ga0066905_1021459472 32Ga0066903_1009029443 33Ga0066903_1057032691 34Ga0068858_1023129532 35Ga0075288_10574861 36Ga0070717_113274142 37Ga0075368_101873001 38Ga0066652_1014504131 39Ga0066652_1015883381 40Ga0068871_1023751742 41Ga0074059_121232981 42Ga0074057_112901462 43Ga0079222_123953361 44Ga0066653_107609391 45Ga0075421_1000066981 46Ga0075421_1011617962 47Ga0075420_1001894511 48Ga0105240_127172951 49Ga0105245_125074451 50Ga0066709_1004030483 51Ga0066709_1037885401 52Ga0105243_126722432 53Ga0105242_101780911 54Ga0105242_120162861 55Ga0126307_115701181 56Ga0126374_115220762 57Ga0126304_102710653 58Ga0126314_102487181 59Ga0126380_103564881 60Ga0126310_110900421 61Ga0134084_102147971 62Ga0134080_106510251 63Ga0126378_104387921 64Ga0134066_100653692 65Ga0126379_114030351 66Ga0134127_106675002 67Ga0134123_108517641 68Ga0120163_10804062 69Ga0120152_11849741 70Ga0137374_104264561 71Ga0137374_106630531 72Ga0137380_109584241 73Ga0137380_111241531 74Ga0137376_110798961 75Ga0137366_104227231 76Ga0137366_105896032 77Ga0137369_104280301 78Ga0137371_108131511 79Ga0137375_106675221 80Ga0137375_114599162 81Ga0157305_100895251 82Ga0157283_100610381 83Ga0157286_104137151 84Ga0157297_104576332 85Ga0157302_100621751 86Ga0164298_108491421 87Ga0164308_108547611 88Ga0164304_112469911 89Ga0164304_118242681 90Ga0164305_110098031 91Ga0157373_109210601 92Ga0157372_131231541 93Ga0120181_10759761 94Ga0134081_100895313 95Ga0157377_111021452 96Ga0132256_1005666181 97Ga0132256_1012375602 98Ga0132257_1037314971 99Ga0132255_1003681904 100Ga0066655_106605611 101Ga0066667_118388042 102Ga0190270_126085872 103Ga0173481_104990102 104Ga0173482_102552821 105Ga0193701_10261171 106Ga0193724_10929332 107Ga0247802_10092031 108Ga0247661_10909911 109Ga0247671_10266591 110Ga0207663_108828591 111Ga0207646_115462361 112Ga0207687_110681422 113Ga0207664_118615072 114Ga0207709_102853723 115Ga0207651_117736682 116Ga0207640_109620332 117Ga0207708_106760572 118Ga0207683_104881341 119Ga0207683_108965211 120Ga0209811_102116851 121Ga0209382_103405234 122Ga0268265_114146652 123Ga0265337_11653362 124Ga0307276_101233222 125Ga0307291_10054331 126Ga0307293_102226811 127Ga0307303_100176093 128Ga0307303_101533771 129Ga0307318_101668992 130Ga0307316_101367842 131Ga0307320_101780002 132Ga0307323_100622463 133Ga0307323_103458881 134Ga0307284_101067102 135Ga0307284_101189303 136Ga0307310_101691211 137Ga0307310_102258123 138Ga0307314_101369662 139Ga0307278_102630021 140Ga0307300_102506361 141Ga0307308_101911042 142Ga0307495_101733151 143Ga0308194_100777751 144Ga0318573_107254992 145Ga0318529_104743702 146Ga0307413_118463402 147Ga0310904_111916012 148Ga0310904_112226411 149Ga0308174_115800131 150Ga0316583_102314592 151Ga0310896_106616502 152Ga0364945_0195248_1_111
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66 1OU_00395130 2AL20A1W_12245903 3JGI1027J12803_1096092321 4JGI10216J12902_1040570561 5JGI10216J12902_1081244272 6Ga0062590_1018635101 7Ga0062595_1008359092 8Ga0066807_10381561 9Ga0066674_105293572 10Ga0070701_100904101 11Ga0070708_1006403592 12Ga0070681_119127902 13Ga0066670_104977472 14Ga0068856_1021565152 15Ga0066903_1057032691 16Ga0075288_10574861 17Ga0075368_101873001 18Ga0105245_125074451 19Ga0066709_1004030483 20Ga0126304_102710653 21Ga0134080_106510251 22Ga0134127_106675002 23Ga0120163_10804062 24Ga0120152_11849741 25Ga0137374_104264561 26Ga0137374_106630531 27Ga0137380_109584241 28Ga0137369_104280301 29Ga0157283_100610381 30Ga0157297_104576332 31Ga0164304_118242681 32Ga0132256_1005666181 33Ga0132256_1012375602 34Ga0066655_106605611 35Ga0190270_126085872 36Ga0307276_101233222 37Ga0307320_101780002 38Ga0307310_102258123 39Ga0307314_101369662 40Ga0318529_104743702
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44 1Ga0307300_102506361 2OU_00395130 3AL20A1W_12245903 4JGI1027J12803_1096092321 5JGI10216J12902_1040570561 6JGI10216J12902_1081244272 7Ga0062590_1018635101 8Ga0062595_1008359092 9Ga0066807_10381561 10Ga0066388_1018988002 11Ga0070682_1017984351 12Ga0070708_1006403592 13Ga0066695_106267731 14Ga0066670_104977472 15Ga0068855_1002396321 16Ga0068857_1025496741 17Ga0068856_1021565152 18Ga0066905_1021459472 19Ga0066903_1009029443 20Ga0066903_1057032691 21Ga0070717_113274142 22Ga0075421_1011617962 23Ga0105240_127172951 24Ga0105245_125074451 25Ga0066709_1004030483 26Ga0126307_115701181 27Ga0126374_115220762 28Ga0126304_102710653 29Ga0126380_103564881 30Ga0126310_110900421 31Ga0126378_104387921 32Ga0120163_10804062 33Ga0120152_11849741 34Ga0137374_104264561 35Ga0137374_106630531 36Ga0137380_109584241 37Ga0137380_111241531 38Ga0137376_110798961 39Ga0137366_104227231 40Ga0137366_105896032 41Ga0137369_104280301 42Ga0137371_108131511 43Ga0137375_114599162 44Ga0157286_104137151 45Ga0157297_104576332 46Ga0157302_100621751 47Ga0164304_112469911 48Ga0164304_118242681 49Ga0120181_10759761 50Ga0134081_100895313 51Ga0132256_1005666181 52Ga0132256_1012375602 53Ga0173482_102552821 54Ga0193724_10929332 55Ga0207646_115462361 56Ga0207664_118615072 57Ga0207709_102853723 58Ga0209382_103405234 59Ga0265337_11653362 60Ga0307276_101233222 61Ga0307293_102226811 62Ga0307318_101668992 63Ga0307316_101367842 64Ga0307320_101780002 65Ga0307323_103458881 66Ga0307284_101067102 67Ga0307284_101189303 68Ga0307310_101691211 69Ga0307314_101369662 70Ga0307278_102630021 71Ga0318573_107254992 72Ga0316583_102314592 73Ga0310896_106616502
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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 47.22% β-sheet: 0.00% Coil/Unstructured: 52.78%
Feature Viewer
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF00583	Acetyltransf_1	35.53
PF01061	ABC2_membrane	22.37
PF13649	Methyltransf_25	9.21
PF08241	Methyltransf_11	4.61
PF12847	Methyltransf_18	2.63
PF13673	Acetyltransf_10	2.63
PF13489	Methyltransf_23	2.63
PF00005	ABC_tran	1.97
PF13672	PP2C_2	0.66
PF01833	TIG	0.66

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	87.50 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.66 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.66 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	68.42 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	36.84 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.66 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	5.26 %
Deinococcus-Thermus	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus	1.32 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.66 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	25.00 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.66 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.32 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.66 %
Unclassified	root	N/A	12.50 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	5.26 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.66 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.26 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.32 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	1.32 %
Unclassified	root	N/A	12.50 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	16.45 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.66 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.66 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.26 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.32 %
Kribbellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae	1.32 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.66 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.26 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.32 %
Kribbella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella	1.32 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.66 %
Unclassified	root	N/A	12.50 %

Name	Rank	Taxonomy	Distribution
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.32 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	16.45 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.66 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5.26 %
Deinococci	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Deinococcus-Thermus → Deinococci	1.32 %
Kribbella catacumbae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella catacumbae	1.32 %
Planctomycetota bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetota bacterium	0.66 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.66 %
Unclassified	root	N/A	12.50 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908016\|OU_2_1_1_newblercontig63040	All Organisms → cellular organisms → Bacteria	770	Open in IMG/M
3300000880\|AL20A1W_1224590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1330	Open in IMG/M
3300000955\|JGI1027J12803_109609232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	570	Open in IMG/M
3300000956\|JGI10216J12902_104057056	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300000956\|JGI10216J12902_108124427	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300000956\|JGI10216J12902_112702838	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300004081\|Ga0063454_100111129	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300004157\|Ga0062590_101863510	All Organisms → cellular organisms → Bacteria	619	Open in IMG/M
3300004479\|Ga0062595_100835909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	765	Open in IMG/M
3300005161\|Ga0066807_1038156	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M

Showing 1 to 10 of 152 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.32%
Host-Associated	Host-Associated	23.68%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	23.68%
Terrestrial	Environmental → Terrestrial	75.66%
Unclassified	Environmental → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Floodplain	Environmental → Terrestrial → Floodplain	0.66%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.47%
Roots	Host-Associated → Plants → Roots	1.32%
Soil	Environmental → Terrestrial → Soil	75.00%
Unclassified	Environmental → Unclassified → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.66%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.26%
Loam	Environmental → Terrestrial → Soil → Loam	10.53%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.66%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.95%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.32%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.32%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified	0.66%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.66%

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.63%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.24%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	11.18%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	2.63%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.66%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	42.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.26%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.95%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.32%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.66%
Unclassified	Environmental → Unclassified → Unclassified → Unclassified → Unclassified	0.66%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.66%

Habitat	Taxonomy	Distribution
	Environmental → Unclassified → Unclassified → Unclassified → Unclassified →	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.66%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.32%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	3.95%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.32%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.66%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.26%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.63%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.32%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.66%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	2.63%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.66%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.66%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.66%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	8.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.66%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.32%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.32%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.63%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.24%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908016	Sample 642	Environmental	Open in IMG/M
3300000880	Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A35-65cm-20A)- 1 week illumina	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M

Showing 1 to 10 of 130 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
OU_00395130	2124908016		VRRLPATTIYYGLNVVLRMPTWVVMAVYLVRELHLSPLQLVLMGTAMEAAVFLF
AL20A1W_12245903	3300000880	Permafrost	VRRADATRLYYMLQFIQYLPTWVVMAVYLVRTLHLSPLQLVLM
JGI1027J12803_1096092321	3300000955	Soil	VGLAEAVKRVGAEKLYYALELVLSTPTWIVMSLYLVSDLNLSPLQLVLMGTAMEA
JGI10216J12902_1040570561	3300000956	Soil	MRRVDAEKLYYALEFLLSTPTWVVTSLYLVSVLDLSPLQLVLMGTAMEASVFLC
JGI10216J12902_1081244272	3300000956	Soil	VRRADPERLYYVLQVLLAIPTWVAMAVYLVKVVDMSPLQLVLMGTAMEAT
JGI10216J12902_1127028381	3300000956	Soil	MRRVDAEKLYYALEFFLSTPTWVVTSLYLVSVLHLSPLQLVLMGTAMEASVFLC
Ga0063454_1001111293	3300004081	Soil	MRRVDAEKLYYALEFFLATPTWVVTSLYLVSVLDLSPLQLVLMGTAMEGAVFLFE
Ga0062590_1018635101	3300004157	Soil	MKRLPATTVFYGLELLLSFPTFVVMAVYLVRELHFTPLELVLMGTAME
Ga0062595_1008359092	3300004479	Soil	VKRPSAETLYYALSFALRMPTWVVMAVYLVRTLHLSPLQLVLM
Ga0066807_10381561	3300005161	Soil	MRRLPATAVFYGLEFLLSMPTWVVVAVYLVQELDFSPLQLVLMGTAMEAAVSCARFRPE*
Ga0066674_105293572	3300005166	Soil	VRRLPATTVYYGLSFGSRLPTWVVAAVYLVRELHLSPLQLVLMGT
Ga0066690_109293731	3300005177	Soil	MKRLPATTVYYGLTFGLRLPTWVVMAVYLVRELHFSPLQLVLMGTAME
Ga0066388_1018988002	3300005332	Tropical Forest Soil	MRRFRATTVYYGLSFGGYMPTWVVMAVYLVQELHLSPLQLVLMGTAMEA
Ga0070677_105788721	3300005333	Miscanthus Rhizosphere	VRRLPATAVYFGLQLGAHLPTWVVMAVYLVRELHLSPLQLVLMGTAMEA
Ga0070682_1017984351	3300005337	Corn Rhizosphere	VTRLPAKTVYYGLCFGLRLPTWVVMAVYLVRELHFSPLQLVLM
Ga0070667_1015525232	3300005367	Switchgrass Rhizosphere	VRRLPATAVYFGLQLGAHLPTWVVMAVYLVRELHLSPLQLVL
Ga0070701_100904101	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLPATTVYYGLELLLSMPTWVVMSVYLVSELDLSPLQLVLM
Ga0070700_1018497682	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MRGLRATTVYYGLSFGGYMPTWVVMAVYLVNELHLSPLQLVL
Ga0070708_1006403592	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VRRLPATAVYFGLQLGAHLPTWVVMAVYLVRELHFSPLQLVLMGTAMEAA
Ga0070708_1007361381	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	VKRLPATTVYYGLSFGLHLPTWVVMAVYLVRELHFSPLQL
Ga0070681_119127902	3300005458	Corn Rhizosphere	MRRFGATTVYYGLSFGGYMPTWVVMSVYLVSELHLSPLQLVLMGTAMEAAV
Ga0066695_106267731	3300005553	Soil	MRRLPARPVYYGLNFVLRMPTWVVMAVYLVQELHFSPLQLVLMG
Ga0066692_101504311	3300005555	Soil	MRRLPARPVYFGLSFVLRMPTWVVMAVYLVQELHFSPLQLVLMGTAMEA
Ga0066698_110271212	3300005558	Soil	MKRLPATTVYYGLTFGLRLPTWVVMAVYLVRELHFSPLQLVLMGTAMEAAVFLFE
Ga0066670_104977472	3300005560	Soil	VKRADPTRLYYSLEFLLSMPTWVAMAVFLVSVLHFSPLQLVLMGTAME
Ga0068855_1002396321	3300005563	Corn Rhizosphere	MRPLPARGVYFALQFGAHLSTWVVMAVYLVRELHFSPLQLVLMGTAMEAAVFL
Ga0068855_1022141082	3300005563	Corn Rhizosphere	VRRLPATAVYFGLQLGAHLPTWVVMAVYLVRELHFSPLQLVLMGTAMEAAVFL
Ga0068857_1025496741	3300005577	Corn Rhizosphere	MRPLPPRAVYFGLQFGSHLPTWVVMSVYLVRELHFSPLQLVLMGTAME
Ga0068856_1021565152	3300005614	Corn Rhizosphere	VKPLPATRVYYGICCFGLHLPTWVVMAVYLVRDLHLTPLQL
Ga0068856_1023036252	3300005614	Corn Rhizosphere	VRRAEPTRLYYSLEFLLSMPTWVAMAVYLVSVLHFSPLQLVLMGTAME
Ga0066905_1021459472	3300005713	Tropical Forest Soil	VRRADAEKLYYALELATSMPTWIVMSLYLVSVLELTPLQLVLMGTAMEAAVFL
Ga0066903_1009029443	3300005764	Tropical Forest Soil	MKRLPARTVYYGLELLLRVPTWVVMSVYLVQELHLSPLQLVLMGTAME
Ga0066903_1057032691	3300005764	Tropical Forest Soil	VKRPGAERLYYWLTFVLSMPTWVVVAVYLVRDLHLTPLQLVLMGTAMEA
Ga0068858_1023129532	3300005842	Switchgrass Rhizosphere	LRPLPARAVYFGLQLGAHLPTWVVMSVYLVRELHFSPLQLVLMGTAMEAA
Ga0075288_10574861	3300005874	Rice Paddy Soil	VRPLPARPVYYGLQFGAHLPTWVVMAVYLVRELHFSP
Ga0070717_113274142	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	VRRVGAEKLYYSLEFFLSMPTWVVVSLYLVSVLHLTPFQLVLMGTAMEASIFLFE
Ga0075368_101873001	3300006042	Populus Endosphere	MRGLRATTVYYGLSFGGYMPTWVVMAVYLVSELHL
Ga0066652_1014504131	3300006046	Soil	MKRLSATTVYYGLSFGLRMPTWVVMAVYLVRELHLSPLQLVLMGTAMEAAVF
Ga0066652_1015883381	3300006046	Soil	MRRLPATTVFYGLELLGRLPTWVVMSVYLVRELHLSPLQLVLMGTAM
Ga0068871_1023751742	3300006358	Miscanthus Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHLSPLQLVLMGTAMEAA
Ga0074059_121232981	3300006578	Soil	LRRADATRLYYALQILLSMPTWVVMAVYLVQELHLSPLQLVLMG
Ga0074057_112901462	3300006605	Soil	MRRLPATTVYYGLELLVSMPTWVVMSVYLVSELDLSPLQLVLMGT
Ga0079222_123953361	3300006755	Agricultural Soil	VKRLPATTIYYGLSFGLQLPTWVVMSVYLVSELHLSPLQLVLMGTAMEGAVFLF
Ga0066653_107609391	3300006791	Soil	MRRLPATTVFYGLELLGRLPTWVVMSVYLVRELHLSPLQLVLMGTAMEGAVF
Ga0075421_1000066981	3300006845	Populus Rhizosphere	MRRLPATTVYYGLSFGLRTPTWVVMAVYLVRELHF
Ga0075421_1011617962	3300006845	Populus Rhizosphere	MKRLPATTVFYGLEFFLSWPTWVVMAVYLVNELHLSPLQLVLMGTAMEAAV
Ga0075420_1001894511	3300006853	Populus Rhizosphere	MKRLPATTVFYGLEFFLSWPTWVVMAVYLVNELHFSPLQLVLMGT
Ga0105240_127172951	3300009093	Corn Rhizosphere	VRRADPTRLYYVLEFLLAMPTWVAMAVYLVSVLHFSPLQLVLMVTA
Ga0105245_125074451	3300009098	Miscanthus Rhizosphere	MRRAEPTRLYYALQILLSMPTWVVMAVYLVKELHLLPLQLLLMGTAMEAAVFL
Ga0066709_1004030483	3300009137	Grasslands Soil	VRRADATRLYFELQILLSMPTWVVMSVYLVQELHFPPLQLVLMGL
Ga0066709_1037885401	3300009137	Grasslands Soil	VKRADPTRLYYSLEFLLSMPTWVAMAVFLVSVLHFSPLQLVLMGTA
Ga0105243_126722432	3300009148	Miscanthus Rhizosphere	MRKADATRLYYALQILSGVPTWVVMSVYLVQELHLSPLQLVLMGT
Ga0105242_101780911	3300009176	Miscanthus Rhizosphere	MRRADATRLYYALQILLSMPTWVVMAVYLVQELHLSPLQLVLMGTA
Ga0105242_120162861	3300009176	Miscanthus Rhizosphere	VRRVDAEKLYYWLEFFLATPTWVVTSLYLVSVLDLSPLQLVLMGTAMEATVFLC
Ga0126307_115701181	3300009789	Serpentine Soil	VKRLPATTVYYGLELLLSTPTWVVVSIYLVRELHLSPLELLLM
Ga0126374_115220762	3300009792	Tropical Forest Soil	MRRLSATTVYYGLSFGTRMPTWVVMAVYLVRELHLSPLQLVLMGTAMEAAVFLF
Ga0126304_102710653	3300010037	Serpentine Soil	VKRFPATPVYYGLELALRVPTWVVMAVYLVSELHLSPVGLVLMGTAMEAAV
Ga0126314_102487181	3300010042	Serpentine Soil	MRRLSPTTVYYGLSFGGYMPTWVVMAVYLVQELHLSPLQLVLMGT
Ga0126380_103564881	3300010043	Tropical Forest Soil	MKRLAATSVYYGLSFGTNMPTWVVMAVYLVRDLHLSPLQLVLIGTAMEAAVFLFE
Ga0126310_110900421	3300010044	Serpentine Soil	VRRLPATSVYFGLELVLRVPTWVVMAVYLVSELHLSPLELVL
Ga0134084_102147971	3300010322	Grasslands Soil	MRRLSATPVYYGLSFGTRMPTWVVMAVYLVRELHFSPLHLVLM
Ga0134080_106510251	3300010333	Grasslands Soil	MIRIRRLPATTVFYGLELLDRVPTWVVMSVYLVRELHLSPLQLVLMGTAMEAS
Ga0126378_104387921	3300010361	Tropical Forest Soil	VRRFPATAVYYGLSFGGHLPTWVVMSVYLVRELHLSPLQLV
Ga0134066_100653692	3300010364	Grasslands Soil	VKRPSAETLYYGLSFALRMPTWVVMAVYLVRTLHLSPL
Ga0126379_114030351	3300010366	Tropical Forest Soil	MRRLRATTVYYGLSFVGYMPTWVVIAVYLVSELHLSPLQLVLMGTAMEAAVFA
Ga0134127_106675002	3300010399	Terrestrial Soil	MRRLPATTVYYGLELLLSAPTFVVVAVYLVSDLDLSPLQLVLMGTAMEATVF
Ga0134123_108517641	3300010403	Terrestrial Soil	MRRFGATTVYYGLSFGGYMPTWVVMSVYLVSELHLSP
Ga0120163_10804062	3300012003	Permafrost	VRRLPATSVFYALELLLRLPTWVAAAVYLVRELHFSPLQL
Ga0120152_11849741	3300012011	Permafrost	VRRLPPLRVYYGLEFFLAMPTWIVISIYLVRELHLSPL
Ga0137374_104264561	3300012204	Vadose Zone Soil	MRRPSATTVFYGLEFLLSAPAWVVIAIYLVRDLHLSPLQLVLMGTAMEASVFLFE
Ga0137374_106630531	3300012204	Vadose Zone Soil	VKRLPAVPVYYGLELLLRVPTWIVMAVYLVRELHL
Ga0137380_109584241	3300012206	Vadose Zone Soil	VTRLPALKVFYGLEFFLSMPTWIVISIYLVRDLHLSPLQLVLMGTSM
Ga0137380_111241531	3300012206	Vadose Zone Soil	VRRPSAETLYYGFSFGLRMPTWVVLAVYLVRTLHLSPLQLVLMGTAMEGA
Ga0137376_110798961	3300012208	Vadose Zone Soil	MKRLPATTVYYGLTFGLRLPTWVVMAVYLVRELHLTPLQLVLMGTAMEAAVFLF
Ga0137366_104227231	3300012354	Vadose Zone Soil	VRRADATRLYYVLQVLLFVPTWVVMAVYLVRVVHLSPLQLILMGTAMEAAVFL
Ga0137366_105896032	3300012354	Vadose Zone Soil	VRRLPATTVYYGIEFVDRLPTWVVMAVYLVRELHFSPLQLVLMGT
Ga0137369_104280301	3300012355	Vadose Zone Soil	VRRLPATSVYYALECARATPTWVVMSLYLVQVLHLSP
Ga0137371_108131511	3300012356	Vadose Zone Soil	VRRLPATTVFYGLELLDRVPTWVVMSVFLVRELHLSPLQLVLMGTAME
Ga0137375_106675221	3300012360	Vadose Zone Soil	VRRLPATSVYYALEFALATPTWVVMSLYLVQVLHLS
Ga0137375_114599162	3300012360	Vadose Zone Soil	MRRFPATTVFYGLEFFLRWPTWVVMAVYLVRELDLSPLQLVLIGTAMEGAVFLS
Ga0157305_100895251	3300012891	Soil	VRGLRATTVYYGLSFGGYMPTWVVMAVYLVNELHLSPLQLVLMGT
Ga0157283_100610381	3300012907	Soil	VRRADATRLYYVLQVLLFMPTWVVMAVYLVQTVHLSPL
Ga0157286_104137151	3300012908	Soil	MRRLPATTVYYGLELLLSAPTFVVVAVYLVSDLELSPLQLVLMGTA
Ga0157297_104576332	3300012914	Soil	MRNADATRLYYALQILSGVPTWVVMSVYLVQELHLSPLQLVLMGTAMEG
Ga0157302_100621751	3300012915	Soil	VRRPNAETLYYSLSFLSGMPTWVVMAVYLVRELHLTPLQLVLMGTA
Ga0164298_108491421	3300012955	Soil	VRRLPATAVYFGLQLGAHLPTWVVMAVYLVRELHFSPLQLVLM
Ga0164308_108547611	3300012985	Soil	MRRFGATTVYYGLSFGGYMPTWVVMSVYLVSELHLSPLQ
Ga0164304_112469911	3300012986	Soil	MRRADATRLYYALQILLSMPTWVVMAVYLVQELHLSPLQLVLMGTAM
Ga0164304_118242681	3300012986	Soil	VRRVDAERLYYALQLLLSMPTWVVVSVYLVSDLHLSP
Ga0164305_110098031	3300012989	Soil	MRHVAAEKLYYALEFFLSTPTWVVTSLYLVSVLDLTPLQLVLMGTAMEASVFLCE
Ga0157373_109210601	3300013100	Corn Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHL
Ga0157372_131231541	3300013307	Corn Rhizosphere	MRPLPARGVYFALQFGAHLPTWVVMAVYLVRELHFSP
Ga0120181_10759761	3300013766	Permafrost	MRRADPTRLYYTLQFLLFMPTWVVVAVYLVRVAHLSPLQLVLM
Ga0134081_100895313	3300014150	Grasslands Soil	VRRADAEKLYYALEFFLATPTWVVTSLYLVSVLHLSPLQLVLMGTVMEASIFLCEFP
Ga0157377_111021452	3300014745	Miscanthus Rhizosphere	MRGLRATTVYYGLSFGGYMPTWVVMAVYLVNELHLSPLQLVLMGTAMEA
Ga0132256_1005666181	3300015372	Arabidopsis Rhizosphere	VTRLPAIRVFYALEFVLATPAWVVVSLYLVRDLHLSPLELVLMGTAMEAAV
Ga0132256_1012375602	3300015372	Arabidopsis Rhizosphere	MRRLRATTFFYALELLLALPTWVVVSIYLVRELQLSPLQLVLMGTAMEA
Ga0132257_1037314971	3300015373	Arabidopsis Rhizosphere	MRRLRATTVFYALELLLALPTWVVVSIYLVRELQLSPLQLVLMGTAMEA
Ga0132255_1003681904	3300015374	Arabidopsis Rhizosphere	MRRFRATTVYYGLSFGGYMPTWVVMAVYLVQELHLSPLQLVLMGTAMEAAVFVF
Ga0066655_106605611	3300018431	Grasslands Soil	MRRLPARPVYYGLSFVLRMPTWVVMAVYLVQELHFSPLQLVLMGTVMEGV
Ga0066667_118388042	3300018433	Grasslands Soil	VRRADAEKLYYALEFFLATPTWVVTSLYLVSVLHLSPLQLVLMGTVME
Ga0190270_126085872	3300018469	Soil	MRRPSATNVYYGLQFLLYMPTWVVMAVYLVRELDLS
Ga0173481_104990102	3300019356	Soil	MKRLPATTVFYGLELLLSFPTFVVMAVYLVRELHFTPLELVLMGTAMEG
Ga0173482_102552821	3300019361	Soil	MRRADATRLYYVLQVLLFMPTWVVMAVYLVQTVHLSPL
Ga0193701_10261171	3300019875	Soil	VRLPATTVYYGLSFGSRLPTWVVMAVYLVRELHLSPLQLVLMGTAMEAAVFLF
Ga0193724_10929332	3300020062	Soil	VRPFPARAVYFGLQFGAHLPTWVVMAVYLVRELHFSPL
Ga0247802_10092031	3300023077	Soil	MRRADATRLYYVLQVLLFMPTWVVMAVYLVQTVHL
Ga0247661_10909911	3300024254	Soil	MRRFGATTVYYGLSFGGYMPTWVVMSVYLVSELHLSPLQLVLM
Ga0247671_10266591	3300024284	Soil	VKRPGAERLYYSLTFVLSMPTWVVMAVYLVRDLHLTPLQL
Ga0207663_108828591	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MRRVDAEKLYYALEFFLATPTWVVTSLYLVSVLDLSPLQLVLMGTAMEAS
Ga0207646_115462361	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	VRRPSAESLYYALTFGLRMPTWVVMAVYLVRELHLSPLQLVLMGTAM
Ga0207687_110681422	3300025927	Miscanthus Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHLSPLQLVLMGTA
Ga0207664_118615072	3300025929	Agricultural Soil	VRRLPALKLFYALEVLLSMPTWVVVSIYLVRDLHLSPLQLVLMGTAMEAAVF
Ga0207709_102853723	3300025935	Miscanthus Rhizosphere	VRRLPATTVYYGLELLLSMPTWVVMSVYLVSELDLSPLQLVLMGTA
Ga0207651_117736682	3300025960	Switchgrass Rhizosphere	MRRVDAEKLYYGLEFFLATPTWVVTSLYLVSVLHLSPLQLVLMGTAM
Ga0207640_109620332	3300025981	Corn Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHLSPLQL
Ga0207708_106760572	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHFSPLQLVLMGTAMEAAIFLCE
Ga0207683_104881341	3300026121	Miscanthus Rhizosphere	MRRLPATTVYYGLELLLSAPTFVVVAVYLVSDLDLSPLQLVLMGTAMEAT
Ga0207683_108965211	3300026121	Miscanthus Rhizosphere	MRPLPARAVYFGLQFGAHLPTWVVMSVYLVRELHLSPLQLVLMGTAMEA
Ga0209811_102116851	3300027821	Surface Soil	VRRLPPTAVYFGLQLGAHLPTWVVMAVYLVRELHFS
Ga0209382_103405234	3300027909	Populus Rhizosphere	MRRLPATTVYYGLSFGLRTPTWVVMAVYLVRELHFSPL
Ga0268265_114146652	3300028380	Switchgrass Rhizosphere	MRRLPATTVYYGLELLLSAPTFVVVAVYLVSDLELSPLQLVLMGTAMEATVFL
Ga0265337_11653362	3300028556	Rhizosphere	VRRPGPEGLYYALTFVLRMPTWVVMAVYLVQKLHLTPLQLVLMGTAME
Ga0307276_101233222	3300028705	Soil	MKRLPATDVYYGLCFGLHLPTWVVMAVYLVREVHFSPLQLVL
Ga0307291_10054331	3300028707	Soil	VRRADATRLYYALKILVSMPTWVVMAVYLVQELHLSPLQL
Ga0307293_102226811	3300028711	Soil	VRRADAERLYYALELLLSAPTWVVASLYLVTELHLSPLQLVLMGTAMEGTVFL
Ga0307303_100176093	3300028713	Soil	VRPLPPRAVYFGLQFGAHLPTWVVMSVYLVRELHFSPL
Ga0307303_101533771	3300028713	Soil	VRRADATRLYYALQILVSMPTWVVMAVYLVQELHLSPLQ
Ga0307318_101668992	3300028744	Soil	MRRPAATNVYYGLQFLLYMPTWVVMAVYLVRELDLSPLELILMGT
Ga0307316_101367842	3300028755	Soil	VRRADATRLYYVLQVLLLMPTWVVMAVYLVRELNLSPLELSLIG
Ga0307320_101780002	3300028771	Soil	MTRLRATTVFYGLEFFLSWTTFVVMAVYLVNELHL
Ga0307323_100622463	3300028787	Soil	MRRLPARPVYYGLNFVLRLPTWVVMAVYLVQELHFSPLQLVLMG
Ga0307323_103458881	3300028787	Soil	MQRLPARTVYYGLEFFLRFPTWVVMAVYLVRELHFSPLQLVLMGTAMEAAVFLFEI
Ga0307284_101067102	3300028799	Soil	MRRLPATTVYYGLQVLLFVPTWVVMAVYLVRVAHLSPLQLVLMGT
Ga0307284_101189303	3300028799	Soil	VKRLPATTVYYGICNFGLHLPTWVVMAVYLVRELHFSPLQLVLMG
Ga0307310_101691211	3300028824	Soil	VRRADATRLYYALQFLLFMPTWVVVAVYLVRVLHLS
Ga0307310_102258123	3300028824	Soil	MRRLPATTVYYGLTFGLRLPTWVVMAVYLVRDLHF
Ga0307314_101369662	3300028872	Soil	MRRADPTRLYYILQLLLFVPTWVVMAVYLVRVVHL
Ga0307278_102630021	3300028878	Soil	VRRLPATTVYYGLEFALAMPTWVVISVYLVRDLHLSPLELVLMGTAMEA
Ga0307300_102506361	3300028880	Soil	VRRLPATTVYYGLSFGLRLPTWVVMSVYLVSELHLSPLQLVLMG
Ga0307308_101911042	3300028884	Soil	VKRADATRLYYALQVLLFMPTWVVMAVYLVRVLHLSPLQLILMGT
Ga0307495_101733151	3300031199	Soil	VRPLPARAVYFGIQFGAHLPTWVVMAVYLVRELHFSPLQLVLMGTAME
Ga0308194_100777751	3300031421	Soil	MRRLPARPVYYGLNFVLRLPTWVVMAVYLVQELHFSPLQLVLMGTAMEAAVFLFE
Ga0318573_107254992	3300031564	Soil	VRRADPERLYYAIEFFASTPTWVVMSLYLVSVLDLSPLQLVLMGTAMEASVF
Ga0318529_104743702	3300031792	Soil	VRRADPERLYYAIEFFASTPTWVVMSLYLVSVLDLSPLQLVLMGTAME
Ga0307413_118463402	3300031824	Rhizosphere	MRRADATRLYYALQILLSMPTWVVMSVYLVQELHLSPLQLVL
Ga0310904_111916012	3300031854	Soil	MRGLRATTVYYGLSFGGYMPTWVVMAVYLVNELHLS
Ga0310904_112226411	3300031854	Soil	MRRLPATTVYYGLELLLSAPTFVVVAVYLVSDLDLSPLQLVLMGTAMEATV
Ga0308174_115800131	3300031939	Soil	MRRLPATTVYYGLSVGSRLPTWVVMAVYLVRELHLSPLQLVLMGTAMEAA
Ga0316583_102314592	3300032133	Rhizosphere	VRRPSAETLYYGLSFGLRMPTWVVLAVYFVRELHFSPLQLI
Ga0310896_106616502	3300032211	Soil	MRRFSATAVYYGLSFGAYMPTWVVMSVYLVSELHLSPLQLVL
Ga0364945_0195248_1_111	3300034115	Sediment	MRRPSATNVYYGLQFLLYMPTWVVIAVYLVRELDLSP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F045776

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences