Metagenome / Metatranscriptome Family F045634

Basic Information
Family ID	F045634
Family Type	Metagenome / Metatranscriptome
Number of Sequences	152
Average Sequence Length	41 residues
Representative Sequence	HADRIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGEIA
Number of Associated Samples	122
Number of Associated Scaffolds	152

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	98.03 %
% of genes from short scaffolds (< 2000 bps)	93.42 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Most Common Taxonomy
Group	Bacteria (85.526 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (11.842 % of family members)
Environment Ontology (ENVO)	Unclassified (47.368 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.158 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.29% β-sheet: 20.29% Coil/Unstructured: 59.42%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 152 Family Scaffolds
PF00005	ABC_tran	86.84
PF12704	MacB_PCD	6.58
PF00072	Response_reg	2.63
PF07228	SpoIIE	1.97
PF00118	Cpn60_TCP1	0.66
PF09992	NAGPA	0.66
PF03928	HbpS-like	0.66

COG ID	Name	Functional Category	% Frequency in 152 Family Scaffolds
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	0.66

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.18 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.18 %
Unclassified	root	N/A	13.82 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.53 %
Unclassified	root	N/A	13.82 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	9.87 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	6.58 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.58 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.92 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	0.66 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	6.58 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.26 %
Blastocatellales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales	0.66 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.26 %
Pyrinomonadaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae	0.66 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	1.97 %
Pyrinomonas	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas	0.66 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
asterids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
campanulids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Asterales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Asteraceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Asteroideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Anthemideae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Anthemidinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Tanacetum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	13.82 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	6.58 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1.97 %
Tanacetum cinerariifolium	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	0.66 %
Pyrinomonas methylaliphatogenes	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	0.66 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1205969	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300000574\|JGI1357J11328_10113362	All Organisms → cellular organisms → Bacteria → Acidobacteria	822	Open in IMG/M
3300000890\|JGI11643J12802_10468592	All Organisms → cellular organisms → Bacteria	798	Open in IMG/M
3300000953\|JGI11615J12901_10624104	Not Available	813	Open in IMG/M
3300004157\|Ga0062590_101192501	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300005093\|Ga0062594_100757453	Not Available	889	Open in IMG/M
3300005093\|Ga0062594_102315801	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	584	Open in IMG/M
3300005290\|Ga0065712_10286982	Not Available	884	Open in IMG/M
3300005331\|Ga0070670_100184170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1813	Open in IMG/M
3300005334\|Ga0068869_100444282	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300005339\|Ga0070660_100764068	Not Available	812	Open in IMG/M
3300005343\|Ga0070687_100416530	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300005345\|Ga0070692_11020052	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005354\|Ga0070675_100659606	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300005406\|Ga0070703_10567383	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300005437\|Ga0070710_11273230	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005444\|Ga0070694_100984100	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300005444\|Ga0070694_101642437	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300005459\|Ga0068867_100827274	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	828	Open in IMG/M
3300005467\|Ga0070706_101821589	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005468\|Ga0070707_100992710	All Organisms → cellular organisms → Bacteria	805	Open in IMG/M
3300005547\|Ga0070693_100869017	All Organisms → cellular organisms → Bacteria	673	Open in IMG/M
3300005549\|Ga0070704_100005036	All Organisms → cellular organisms → Bacteria	7682	Open in IMG/M
3300005552\|Ga0066701_10162557	All Organisms → cellular organisms → Bacteria	1351	Open in IMG/M
3300005564\|Ga0070664_101746344	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300005598\|Ga0066706_11248740	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005842\|Ga0068858_100602977	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1065	Open in IMG/M
3300005844\|Ga0068862_101701672	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300005874\|Ga0075288_1032597	Not Available	771	Open in IMG/M
3300006049\|Ga0075417_10397474	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300006797\|Ga0066659_10502917	All Organisms → cellular organisms → Bacteria	972	Open in IMG/M
3300006797\|Ga0066659_11382552	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300006806\|Ga0079220_10636737	Not Available	767	Open in IMG/M
3300006845\|Ga0075421_102562940	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300006852\|Ga0075433_10674862	Not Available	906	Open in IMG/M
3300006854\|Ga0075425_102973126	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300006871\|Ga0075434_101029233	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	837	Open in IMG/M
3300006881\|Ga0068865_100128299	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1897	Open in IMG/M
3300006881\|Ga0068865_101829902	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300007076\|Ga0075435_100253637	All Organisms → cellular organisms → Bacteria	1498	Open in IMG/M
3300009094\|Ga0111539_10453925	All Organisms → cellular organisms → Bacteria	1492	Open in IMG/M
3300009094\|Ga0111539_13303358	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300009101\|Ga0105247_10907380	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300009137\|Ga0066709_103920825	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300009148\|Ga0105243_11032803	Not Available	826	Open in IMG/M
3300009148\|Ga0105243_11120591	Not Available	796	Open in IMG/M
3300009156\|Ga0111538_13019073	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300009162\|Ga0075423_11120556	Not Available	838	Open in IMG/M
3300009162\|Ga0075423_13176537	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300009553\|Ga0105249_10035944	All Organisms → cellular organisms → Bacteria → Acidobacteria	4493	Open in IMG/M
3300009553\|Ga0105249_10834482	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	987	Open in IMG/M
3300009553\|Ga0105249_12851520	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300010043\|Ga0126380_11228182	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300010045\|Ga0126311_10051546	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2647	Open in IMG/M
3300010146\|Ga0126320_1407251	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300010335\|Ga0134063_10014237	All Organisms → cellular organisms → Bacteria	3182	Open in IMG/M
3300010362\|Ga0126377_12438810	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300010397\|Ga0134124_10279968	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1546	Open in IMG/M
3300010397\|Ga0134124_12818495	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300010398\|Ga0126383_13437479	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300010399\|Ga0134127_12571677	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300010400\|Ga0134122_10332382	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300010401\|Ga0134121_10034684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4100	Open in IMG/M
3300010401\|Ga0134121_10837291	Not Available	887	Open in IMG/M
3300010403\|Ga0134123_10541313	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300010403\|Ga0134123_10909721	Not Available	887	Open in IMG/M
3300010403\|Ga0134123_11062555	Not Available	830	Open in IMG/M
3300011119\|Ga0105246_11308873	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300011119\|Ga0105246_11834708	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300011119\|Ga0105246_12135685	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300012200\|Ga0137382_10592677	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300012201\|Ga0137365_11033956	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300012202\|Ga0137363_10007836	All Organisms → cellular organisms → Bacteria	6698	Open in IMG/M
3300012202\|Ga0137363_10137941	All Organisms → cellular organisms → Bacteria	1903	Open in IMG/M
3300012203\|Ga0137399_10959966	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300012207\|Ga0137381_10861923	All Organisms → cellular organisms → Bacteria	784	Open in IMG/M
3300012353\|Ga0137367_10792689	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300012354\|Ga0137366_10126463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1929	Open in IMG/M
3300012355\|Ga0137369_10666010	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300012360\|Ga0137375_11102837	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300012469\|Ga0150984_119721379	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300012681\|Ga0136613_10794471	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300012918\|Ga0137396_11146284	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300012922\|Ga0137394_10442167	All Organisms → cellular organisms → Bacteria	1107	Open in IMG/M
3300012923\|Ga0137359_10000359	All Organisms → cellular organisms → Bacteria → Acidobacteria	34610	Open in IMG/M
3300012923\|Ga0137359_10331743	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1353	Open in IMG/M
3300012925\|Ga0137419_11369874	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300012929\|Ga0137404_10254988	All Organisms → cellular organisms → Bacteria → Acidobacteria	1507	Open in IMG/M
3300012944\|Ga0137410_10005646	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes	8512	Open in IMG/M
3300012948\|Ga0126375_11583684	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300012955\|Ga0164298_11037017	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300012955\|Ga0164298_11708241	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012957\|Ga0164303_10234089	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1041	Open in IMG/M
3300013297\|Ga0157378_10453739	All Organisms → cellular organisms → Bacteria	1273	Open in IMG/M
3300013297\|Ga0157378_11253705	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300013297\|Ga0157378_11850403	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300013297\|Ga0157378_12953755	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300013308\|Ga0157375_11888799	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300014326\|Ga0157380_11370339	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300014326\|Ga0157380_11690252	Not Available	690	Open in IMG/M
3300015262\|Ga0182007_10257361	All Organisms → cellular organisms → Bacteria	628	Open in IMG/M
3300015373\|Ga0132257_100320851	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300015373\|Ga0132257_101376863	Not Available	897	Open in IMG/M
3300016422\|Ga0182039_12122500	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300017792\|Ga0163161_10206381	All Organisms → cellular organisms → Bacteria	1516	Open in IMG/M
3300018061\|Ga0184619_10137141	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1113	Open in IMG/M
3300018084\|Ga0184629_10327797	Not Available	806	Open in IMG/M
3300018422\|Ga0190265_12758504	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300018422\|Ga0190265_13507288	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300018422\|Ga0190265_13571298	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300018468\|Ga0066662_11398695	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300018469\|Ga0190270_12718703	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300019377\|Ga0190264_12100161	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300020003\|Ga0193739_1038768	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300020059\|Ga0193745_1077637	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300021412\|Ga0193736_1024360	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	809	Open in IMG/M
3300025911\|Ga0207654_11390450	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300025913\|Ga0207695_11556288	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300025914\|Ga0207671_10088105	All Organisms → cellular organisms → Bacteria	2335	Open in IMG/M
3300025918\|Ga0207662_10644358	Not Available	740	Open in IMG/M
3300025918\|Ga0207662_11183674	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300025919\|Ga0207657_10478220	Not Available	976	Open in IMG/M
3300025926\|Ga0207659_10482291	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1048	Open in IMG/M
3300025933\|Ga0207706_11224026	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → asterids → campanulids → Asterales → Asteraceae → Asteroideae → Anthemideae → Anthemidinae → Tanacetum → Tanacetum cinerariifolium	623	Open in IMG/M
3300025937\|Ga0207669_10976335	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300025944\|Ga0207661_11458463	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300025945\|Ga0207679_10443918	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300025945\|Ga0207679_11896089	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300025945\|Ga0207679_12142561	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300025961\|Ga0207712_12098934	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300025993\|Ga0208415_1013311	Not Available	780	Open in IMG/M
3300026088\|Ga0207641_10312900	All Organisms → cellular organisms → Bacteria	1487	Open in IMG/M
3300026089\|Ga0207648_10686315	All Organisms → cellular organisms → Bacteria	948	Open in IMG/M
3300026305\|Ga0209688_1041197	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300026555\|Ga0179593_1212261	All Organisms → cellular organisms → Bacteria	2643	Open in IMG/M
3300027748\|Ga0209689_1163452	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300027909\|Ga0209382_11893664	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300028380\|Ga0268265_12655490	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300028381\|Ga0268264_10711323	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	998	Open in IMG/M
3300028381\|Ga0268264_11510405	All Organisms → cellular organisms → Bacteria	682	Open in IMG/M
3300028578\|Ga0272482_10326461	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300031538\|Ga0310888_10859367	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031562\|Ga0310886_10549365	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031716\|Ga0310813_10653665	Not Available	935	Open in IMG/M
3300031716\|Ga0310813_10977811	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300031901\|Ga0307406_10464908	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300031908\|Ga0310900_10510771	Not Available	936	Open in IMG/M
3300032017\|Ga0310899_10129313	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1056	Open in IMG/M
3300032075\|Ga0310890_11754054	All Organisms → cellular organisms → Bacteria	516	Open in IMG/M
3300032211\|Ga0310896_10642729	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300033412\|Ga0310810_11207609	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300034165\|Ga0364942_0274127	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	59.87%
Host-Associated	Host-Associated	40.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	56.58%
Plants	Host-Associated → Plants	40.13%
Aquatic	Environmental → Aquatic	3.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.26%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.87%
Freshwater	Environmental → Aquatic → Freshwater	1.97%
Sediment	Environmental → Aquatic → Sediment	1.32%
Floodplain	Environmental → Terrestrial → Floodplain	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	46.05%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.37%
Loam	Environmental → Terrestrial → Soil → Loam	8.55%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	7.89%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.97%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.32%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.32%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.32%
Ice	Environmental → Aquatic → Freshwater → Ice	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.66%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	30.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.37%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.55%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	7.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.95%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.32%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.32%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.66%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.66%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.66%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.66%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.66%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.66%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.21%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.95%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.95%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	2.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.97%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.97%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.97%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.97%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.32%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.32%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	1.32%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.32%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.32%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.66%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.66%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.66%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.66%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.66%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.66%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.66%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.66%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.66%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.66%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.66%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.66%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.66%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000574	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005874	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010146	Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015262	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300020059	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a2	Environmental	Open in IMG/M
3300021412	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m1	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025993	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404 (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026305	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300034165	Sediment microbial communities from East River floodplain, Colorado, United States - 19_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F045634

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_12059691	2228664022	Soil	YAQHADRIVHLFDGLIVEEETGANRREIEEAKQELRESGFTEVQ
JGI1357J11328_101133621	3300000574	Groundwater	VHLFDGLIIEEEAGANRREIEEAKRELKESGFGEIA*
JGI11643J12802_104685922	3300000890	Soil	VHLFDGLIVEEEAGADRREIQEARRELAESGFGAIS*
JGI11615J12901_106241042	3300000953	Soil	QHADRIVHLFDGLIVEEEAGSDRREIQEAKRELAESGFGAIQ*
Ga0062590_1011925011	3300004157	Soil	DRIVHLFDGLIVEEEAGANRREVEDAKREGKENGFGAIG*
Ga0062594_1007574532	3300005093	Soil	QHADRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS*
Ga0062594_1023158011	3300005093	Soil	DPRYAHQADRIVHLFDGLIVEEEAGANRREIEEAKQDLRESGFTEVQ*
Ga0065712_102869822	3300005290	Miscanthus Rhizosphere	QHADRIVHLFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ*
Ga0070670_1001841701	3300005331	Switchgrass Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGANRREVEEARRAIGEDVRGAIG*
Ga0068869_1004442823	3300005334	Miscanthus Rhizosphere	DRIVHLFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ*
Ga0070660_1007640682	3300005339	Corn Rhizosphere	AQHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS*
Ga0070687_1004165301	3300005343	Switchgrass Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS*
Ga0070692_110200521	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	RYAQHADRIVHLFDGLIVEEETGSASRKAEIEAAKKELKESGFTEVQ*
Ga0070675_1006596061	3300005354	Miscanthus Rhizosphere	ARYAQHADRIVHLFDGVIVEEEAGANRREVADGKRDGQENGLGAIG*
Ga0070703_105673832	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	QHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIQ*
Ga0070710_112732302	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	QHADRIVHLFDGLIVEEEAGANRRQIEEAKHELRESGFTEVQ*
Ga0070694_1009841002	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	YAQHADRIVHLFDGLIVEEEAGSERREIHEQQLKEAGFGAIS*
Ga0070694_1016424371	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	AQHADRIVHLFDGLIVEEETGANRRQIEEAKQELRESGFVEVQ*
Ga0068867_1008272742	3300005459	Miscanthus Rhizosphere	DRIVHLFDGLIVEEEAGANRREVEDAKREAKENGFGAIG*
Ga0070706_1018215892	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	AQHADRIVHLFDGLIVEEEAGAHRREIEEAKRELKESGFGDIA*
Ga0070707_1009927101	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	ADRIVHLFDGLIVEEETGANRRQIEEAKQELRESGFVEVK*
Ga0070693_1008690172	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	AQHADRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIQ*
Ga0070704_1000050361	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	PRYAQHADRIVHLFDGLIVEEETGSASRKAEIEAAKKELKESGFTEVQ*
Ga0066701_101625573	3300005552	Soil	ADRIVHLFDGLIVEEEAGAHRREIEEAKRELKESGFGDIA*
Ga0070664_1017463442	3300005564	Corn Rhizosphere	LFDGLIVEEEAGSERREIQEAKRELAESGFGVIQ*
Ga0066706_112487402	3300005598	Soil	IVHLFDGLIVEEEAGANRREVEDARREAKENGFGAKG*
Ga0068858_1006029773	3300005842	Switchgrass Rhizosphere	HADRIVHLFDGLIVEEETGSASRKAEIEAAKKELKESGFTEVQ*
Ga0068862_1017016722	3300005844	Switchgrass Rhizosphere	ADRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS*
Ga0075288_10325971	3300005874	Rice Paddy Soil	ADRIVHLFDGLIVEEEAGANRREIEEAKQELRESGFTEVQ*
Ga0075417_103974742	3300006049	Populus Rhizosphere	VHLFDGLIVEEETGSASRAAEIEQAKRELKESGFKEVV*
Ga0066659_105029173	3300006797	Soil	HLFDGLIVEEEAGANRREIEEAKRELRESGFTEVQ*
Ga0066659_113825522	3300006797	Soil	RIVHLFDGLIVEEEPGSHRREIEEAKRELKESGFGEIP*
Ga0079220_106367371	3300006806	Agricultural Soil	HLFDGLIVEEEAGADRREIREAKRELAESGFGAIS*
Ga0075421_1025629402	3300006845	Populus Rhizosphere	HADRIVHLFDGLIVEEEAGANRREIEEAKQELRESGFTEVQ*
Ga0075433_106748622	3300006852	Populus Rhizosphere	DRIVHLFDGQIVEEEQGAERREIMERELKESGFGAIS*
Ga0075425_1029731261	3300006854	Populus Rhizosphere	QHADRIVHLFDGLIVKEETGANRRQIEEAKQELRESGFTEVQ*
Ga0075434_1010292331	3300006871	Populus Rhizosphere	LFDGLIVEEETGANRREIEEAKKELRESGFTEVQ*
Ga0068865_1001282991	3300006881	Miscanthus Rhizosphere	HADRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS*
Ga0068865_1018299022	3300006881	Miscanthus Rhizosphere	HLFDGLIVEEEAGANRREIEDAKKELRESGFTEVQ*
Ga0075435_1002536373	3300007076	Populus Rhizosphere	LFDGLIVEEETGSASRAAEIEQAKRELKESGFKEVV*
Ga0111539_104539253	3300009094	Populus Rhizosphere	YAQQADRIVHLFEGLIVEEEAGSERREIHEQQLKEAGFGAIS*
Ga0111539_133033582	3300009094	Populus Rhizosphere	YAQHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS*
Ga0105247_109073802	3300009101	Switchgrass Rhizosphere	YAQHADRIVHLFDGLIVEEEAGADRREIIEAKRELAQSGFGEIA*
Ga0066709_1039208251	3300009137	Grasslands Soil	YAQHADRIVHLFDGLIVEEETGSASRRAEIEAAKRELKESGFGDIQ*
Ga0105243_110328032	3300009148	Miscanthus Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGANRREVEDAKREKKENGLGAIG*
Ga0105243_111205912	3300009148	Miscanthus Rhizosphere	DARYAQHADRIVHLFDGVIVEEEAGANRREVADDKRDGKENSLGAIG*
Ga0111538_130190732	3300009156	Populus Rhizosphere	FDGLIVEEETGSASRKAEIEAAKRELKESGFTEVQ*
Ga0075423_111205561	3300009162	Populus Rhizosphere	VHLFDGLIVEEEAGAARREIQEAKRELAESGFGAIQ*
Ga0075423_131765371	3300009162	Populus Rhizosphere	VHLFDGLIVEEEAGSERREIHEQQLKEAGFGAIS*
Ga0105249_100359444	3300009553	Switchgrass Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGANRREVEDARRDAKENGRGAIG*
Ga0105249_108344823	3300009553	Switchgrass Rhizosphere	LFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ*
Ga0105249_128515201	3300009553	Switchgrass Rhizosphere	IVHLFDGLIVEEEAGANRREVEDAKREKKENGFGAIG*
Ga0126380_112281821	3300010043	Tropical Forest Soil	HLFDGLIVEEETGANRREIEEAKQELRESGFTEVQ*
Ga0126311_100515464	3300010045	Serpentine Soil	QHADRIVHLFDGLIVEEEAGSERREIREARRELAESGFGAIQ*
Ga0126320_14072512	3300010146	Soil	ADRIVHLFDGLIVEEEAGSERREIREAKRELAESGFGAIS*
Ga0134063_100142371	3300010335	Grasslands Soil	IVHLFDGLIVEEEAGANRREIEEAKRELKESGFGEIP*
Ga0126377_124388101	3300010362	Tropical Forest Soil	DRIVHLFDGLIVEEEAGSDRREIQEAKRELAESGFGAIS*
Ga0134124_102799683	3300010397	Terrestrial Soil	YAQHADRIVHLFDGLIVEEEAGANRRQIEEAKQELRESGFTEVQ*
Ga0134124_128184952	3300010397	Terrestrial Soil	LFDGLIVEEEAGADRREIREAKRELAESGFGAIS*
Ga0126383_134374792	3300010398	Tropical Forest Soil	AQHADRIVHLFDGLIVEEETGSASRRAEIEEAKRELKESGFGDIQ*
Ga0134127_125716772	3300010399	Terrestrial Soil	RYAQHADRIVHLFDSLIVEEEAGSERREIHEQQLKEAGFGAIG*
Ga0134122_103323821	3300010400	Terrestrial Soil	IVHLFDGLIVEEETGSASRKAEIEAAKKELKESGFTEVQ*
Ga0134121_100346841	3300010401	Terrestrial Soil	HADRIVHLFDGLIVEEEAGANRREIEDAKKELRESGFTEVQ*
Ga0134121_108372912	3300010401	Terrestrial Soil	HLFDGLIVEEEAGANRREVEDARRDARESGLGAIG*
Ga0134123_105413133	3300010403	Terrestrial Soil	ARYAQHADRIVHLFDGLIVEEEAGANRREVEDARRDAKENGRGAIG*
Ga0134123_109097211	3300010403	Terrestrial Soil	IVHLFDGVIVEEEAGANRREVADAKGDGKENGLGAIG*
Ga0134123_110625551	3300010403	Terrestrial Soil	LFDGLIVEEEAGADRREIQEAKRELAESGFGAIQ*
Ga0105246_113088731	3300011119	Miscanthus Rhizosphere	PRYAQHADRIVHLFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ*
Ga0105246_118347081	3300011119	Miscanthus Rhizosphere	DARYAQHADRIVHLFDGLIVEEEAGANRREVEDAKREGKENGFGAIG*
Ga0105246_121356851	3300011119	Miscanthus Rhizosphere	AQHADRIVHLFDGVIVEEEAGANRREVADAKGDGKENGLGAIG*
Ga0137382_105926771	3300012200	Vadose Zone Soil	IVHLFDGLIVEEEAGANRREIEEAKKELRESGFTEVQ*
Ga0137365_110339561	3300012201	Vadose Zone Soil	HLFDGLIVEEEAGSNRREILEAKRELKESGFGEIA*
Ga0137363_100078361	3300012202	Vadose Zone Soil	RIVHMFDGLIVEEETGANRREIEDAKRELKESGFGDIA*
Ga0137363_101379411	3300012202	Vadose Zone Soil	IVHMFDGLIVEEEAGANRREIEDAKRELKESGFGDIA*
Ga0137399_109599661	3300012203	Vadose Zone Soil	QHADRIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGDIA*
Ga0137381_108619232	3300012207	Vadose Zone Soil	QHADRIVHLFDGLIVEEETGSASRRAEIEAAKRELKESGFGDIQ*
Ga0137367_107926891	3300012353	Vadose Zone Soil	HLFDGLIVEEEAGANRREIEDAKRELRESGFGAIA*
Ga0137366_101264631	3300012354	Vadose Zone Soil	QHADRIVQLFDELIVEEETGAQRLAGERELKESGFGEVSLSA*
Ga0137369_106660101	3300012355	Vadose Zone Soil	LFDGLIVEEEAGSHRREIEDAKRELKESGFGEIP*
Ga0137375_111028372	3300012360	Vadose Zone Soil	AQHADRIVHLFDGLIVEEEAGSHRREIEDAKRELKESGFGEIP*
Ga0150984_1197213792	3300012469	Avena Fatua Rhizosphere	AQHADRIVHLFDGLIVEEETGANRRQIEEAKQELRESGFVEVK*
Ga0136613_107944712	3300012681	Polar Desert Sand	ADRIVHLFDGLIVEEEPGANRREIEDAKRELKESGFGAIA*
Ga0137396_111462842	3300012918	Vadose Zone Soil	ADRIGRLVDGLIWEGEAGANRRECEDAKRELKESGFGDIA*
Ga0137394_104421673	3300012922	Vadose Zone Soil	VHLFDGLIVEEEAGTNRRAVVDAKRADKDDGFGAIG*
Ga0137359_100003591	3300012923	Vadose Zone Soil	IVHLFDGLIVEEEAGANRREIEEAKRELKESGFGEIA*
Ga0137359_103317433	3300012923	Vadose Zone Soil	DRIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGDIA*
Ga0137419_113698742	3300012925	Vadose Zone Soil	HADRIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGEIA*
Ga0137404_102549883	3300012929	Vadose Zone Soil	YAQHADRIVHLFDGLIVEEEAGANRREIEEAKKELRESGFTEVQ*
Ga0137410_100056469	3300012944	Vadose Zone Soil	DRIVHLFDGLIVEEEAGTNRRAVVDAKRGGKDDGFGAIG*
Ga0126375_115836842	3300012948	Tropical Forest Soil	AQHADRIVHLFDGLIVEEEAGADRREIIEAKRELKESGFGAIG*
Ga0164298_110370172	3300012955	Soil	VHLFDGLIVEEEAGANRREIEDAKKELRESGFTEVQ*
Ga0164298_117082412	3300012955	Soil	RIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIQ*
Ga0164303_102340891	3300012957	Soil	RIVHLFDGLIVEEEAGADRREIIEAKRELAQSGFGEIA*
Ga0157378_104537391	3300013297	Miscanthus Rhizosphere	QHADRIVHLFDGLIVEEEAGANRREVEDAKRASNGDGRGAAG*
Ga0157378_112537051	3300013297	Miscanthus Rhizosphere	IVHLFDGLIVEEEAGANRREIEEAKQDLRESGFTEVQ*
Ga0157378_118504032	3300013297	Miscanthus Rhizosphere	YAQHADRIVHLFDGVIVEEEAGANRREVEDAKREAKENGFGAIG*
Ga0157378_129537552	3300013297	Miscanthus Rhizosphere	RIVHLFDGLIVEEEAGSERREIQEAKRELAESGFGVIQ*
Ga0157375_118887991	3300013308	Miscanthus Rhizosphere	LRYAQHADRIVHLFDGLIVEEEAGADRREIREAKRELAGRGFGAIS*
Ga0157380_113703391	3300014326	Switchgrass Rhizosphere	ADRIVHLFDGLIVEEEAGSQRREIHEQQLKEAGFGAIS*
Ga0157380_116902521	3300014326	Switchgrass Rhizosphere	LFDGLIVEEEAGSERREIREAKRELAESGFGAIQ*
Ga0182007_102573611	3300015262	Rhizosphere	DRIVHLFDGLIVEEEAGSERREIQEAKKELAESGFGVIQ*
Ga0132257_1003208513	3300015373	Arabidopsis Rhizosphere	YAQHADRIVHLFDGLIVEEEVGSERREIHEQQLKEAGFGAIS*
Ga0132257_1013768632	3300015373	Arabidopsis Rhizosphere	HADRIVHLFDGLIVEEEAGSERREIREAKRELAESGFGAIQ*
Ga0182039_121225002	3300016422	Soil	VHLFDGLIVEEESGANRREIEEAKQELRESGFTEVQ
Ga0163161_102063811	3300017792	Switchgrass Rhizosphere	DRIVHLFDGLIVEEEAGSERREIREAKRELAESGFGAIQ
Ga0184619_101371411	3300018061	Groundwater Sediment	DRIVHLFDGLIVEEEAGSNRREILEAKRELKESGFGEIA
Ga0184629_103277972	3300018084	Groundwater Sediment	YAQHADRIVHLFDGLIVEEEAGANRREVEDAKRDAKENGFGAIR
Ga0190265_127585041	3300018422	Soil	VHLFDGLIVEEEAGSERREIREAKRELAESGFGAIS
Ga0190265_135072881	3300018422	Soil	HDARYAQHADRIVHLFDGLIVEEEAGANRREVEDARRANENGLGAIG
Ga0190265_135712982	3300018422	Soil	RIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGAIA
Ga0066662_113986952	3300018468	Grasslands Soil	HLFDGLIVEEEAGANRREIEEAKRELRESGFTEVQ
Ga0190270_127187032	3300018469	Soil	DARYAQHADRIVHLFDGVIVEEEAGANRRELEEAKREPKENGFGAIG
Ga0190264_121001611	3300019377	Soil	ADRIVHLFDGLIVEEEAGANRREIEDAKRELKESGFGDV
Ga0193739_10387681	3300020003	Soil	YAQHADRIVHLFDGLIVEEETGSASRKAEMEAAKRELKESGFTEVQ
Ga0193745_10776372	3300020059	Soil	QHADRIVHLFDGLIVEEEAGANRREIEEAKKELRESGFTEVQ
Ga0193736_10243602	3300021412	Soil	HLFDGLIVEEEAGANRREIEEARRAIGEDGLGAAG
Ga0207654_113904502	3300025911	Corn Rhizosphere	DRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIQ
Ga0207695_115562882	3300025913	Corn Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGSERREIHEQQLKEAGFGAIS
Ga0207671_100881054	3300025914	Corn Rhizosphere	YAQHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS
Ga0207662_106443582	3300025918	Switchgrass Rhizosphere	IVHLFDGLIVEEEAGSERREIREAKRELAESGFGAIQ
Ga0207662_111836741	3300025918	Switchgrass Rhizosphere	RYAQHADRIVHLFDGLIVEEEAGANRREIEDAKKELRESGFTEVQ
Ga0207657_104782202	3300025919	Corn Rhizosphere	AQHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS
Ga0207659_104822911	3300025926	Miscanthus Rhizosphere	DARYAQHADRIVHLFDGVIVEEEAGANRREVADGKRDGQENGLGAIG
Ga0207706_112240261	3300025933	Corn Rhizosphere	VHLFDGLIVEEETGSASRKAEIEAAKRELKESGFTEVQ
Ga0207669_109763352	3300025937	Miscanthus Rhizosphere	AQHADRIVHLFDGLIVEDETGSASRKAEIEAAKRELKESGFTEVQ
Ga0207661_114584632	3300025944	Corn Rhizosphere	VHLFDGLIVEEEAGSERREIREAKRELEESGFGAIS
Ga0207679_104439183	3300025945	Corn Rhizosphere	ADRIIHLFDGLIVEEEAGSERREIQEAKRELAESGFGVIQ
Ga0207679_118960892	3300025945	Corn Rhizosphere	IVHLFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ
Ga0207679_121425611	3300025945	Corn Rhizosphere	DRIVHLFDGLIVEEEAGSERREIHEQQLKEAGFGAIS
Ga0207712_120989342	3300025961	Switchgrass Rhizosphere	HHADRIVHLFDGLIVEEEAGANRREVEDAKREKKENGFGAIG
Ga0208415_10133112	3300025993	Rice Paddy Soil	ADRIVHLFDGLIVEEEAGANRREIEEAKQELRESGFTEVQ
Ga0207641_103129001	3300026088	Switchgrass Rhizosphere	HLFDGLIVEEEAGSDRREIREAKRELAESGFGAIQ
Ga0207648_106863153	3300026089	Miscanthus Rhizosphere	DRIVHLFDGVIVEEEAGANRREVADGKRDGQENGLGAIG
Ga0209688_10411972	3300026305	Soil	HDDRIVHLFDGLIVEEEAGAHRREIEEAKRELKESGFGEIP
Ga0179593_12122614	3300026555	Vadose Zone Soil	MAQHADRIVHMFDGLIVEEETGANRREIEDAKRELKESGFGDIA
Ga0209689_11634521	3300027748	Soil	HADRIVHLFDGLIVEEEAGAHRREIEEAKRELKESGFGEIP
Ga0209382_118936642	3300027909	Populus Rhizosphere	HADRIVHLFDGLIVEEEAGANRREIEEAKQELRESGFTEVQ
Ga0268265_126554901	3300028380	Switchgrass Rhizosphere	AQHADRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS
Ga0268264_107113232	3300028381	Switchgrass Rhizosphere	HLFDGLIVEEEAGADRREIREAKRELAESGFGAIQ
Ga0268264_115104051	3300028381	Switchgrass Rhizosphere	PRYAQHADRIVHLFDGLIVEEEAGADRREIQDAKRELAESGFGAIQ
Ga0272482_103264611	3300028578	Soil	AQHADRIVHLFDGLIVEEEAGANRREIEEAKRELKESGFGDIK
Ga0310888_108593672	3300031538	Soil	QHADRIVHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS
Ga0310886_105493652	3300031562	Soil	YAQHADRIVHLFDGLIVEEETGSASRKAEIEAAKRELKESGFTEVQ
Ga0310813_106536651	3300031716	Soil	VHLFDGLIVEEETGANRRQIEEAKQELRESGFVEVQ
Ga0310813_109778111	3300031716	Soil	YAQHADRIVHLFDGLIVEEETGANRRQIEEAKQELRESGFVEVQ
Ga0307406_104649081	3300031901	Rhizosphere	VHLFDGLIVEEEAGANRREIEDAKRELKESGFGAIA
Ga0310900_105107711	3300031908	Soil	DRIVHLFDGLIVEEEAGADRREIREAKRELAESGFGAIQ
Ga0310899_101293133	3300032017	Soil	AQHADRIVHLFDGLIVEEEAGANRREVEDARRDARENGRGATG
Ga0310890_117540542	3300032075	Soil	AQHADRIIHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS
Ga0310896_106427291	3300032211	Soil	IIHLFDGLIVEEEAGADRREIREAKRELAESGFGAIS
Ga0310810_112076092	3300033412	Soil	DRIIHLFDGLIVEEEAGADRREIQEAKRELAESGFGAIS
Ga0364942_0274127_2_145	3300034165	Sediment	DARYAQHADRIVHLFDGLIVEEEAGANRREVEDAKREAKENGLGAIG

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign