Metagenome / Metatranscriptome Family F045293

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F045293
Family Type	Metagenome / Metatranscriptome
Number of Sequences	153
Average Sequence Length	46 residues
Representative Sequence	DLRFETSAIQWDKNVAPTVGQRLSYDVGQTNDRQPCALNLQTI
Number of Associated Samples	111
Number of Associated Scaffolds	153

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	3.29 %
% of genes near scaffold ends (potentially truncated)	96.08 %
% of genes from short scaffolds (< 2000 bps)	90.20 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (67.320 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (15.033 % of family members)
Environment Ontology (ENVO)	Unclassified (68.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (81.046 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.45% β-sheet: 11.27% Coil/Unstructured: 80.28%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 153 Family Scaffolds
PF13581	HATPase_c_2	4.58
PF09722	Xre_MbcA_ParS_C	4.58
PF02518	HATPase_c	2.61
PF08448	PAS_4	1.96
PF00072	Response_reg	1.31
PF00313	CSD	1.31
PF13443	HTH_26	0.65
PF02423	OCD_Mu_crystall	0.65
PF00574	CLP_protease	0.65
PF10546	P63C	0.65
PF13305	TetR_C_33	0.65
PF00009	GTP_EFTU	0.65
PF00873	ACR_tran	0.65
PF07508	Recombinase	0.65
PF07568	HisKA_2	0.65
PF01988	VIT1	0.65
PF13676	TIR_2	0.65
PF03060	NMO	0.65

COG ID	Name	Functional Category	% Frequency in 153 Family Scaffolds
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.31
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.31
COG0516	IMP dehydrogenase/GMP reductase	Nucleotide transport and metabolism [F]	0.65
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.65
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.65
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.65
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.65
COG2070	NAD(P)H-dependent flavin oxidoreductase YrpB, nitropropane dioxygenase family	General function prediction only [R]	0.65
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.65
COG3920	Two-component sensor histidine kinase, HisKA and HATPase domains	Signal transduction mechanisms [T]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	67.32 %
Unclassified	root	N/A	32.68 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	67.32 %
Unclassified	root	N/A	32.68 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	67.32 %
Unclassified	root	N/A	32.68 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	65.36 %
Unclassified	root	N/A	32.68 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	64.71 %
Unclassified	root	N/A	32.68 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	52.94 %
Unclassified	root	N/A	32.68 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.65 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	52.94 %
Unclassified	root	N/A	32.68 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.65 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	49.02 %
Unclassified	root	N/A	32.68 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.68 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	1.96 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	1.31 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1.31 %
Azospirillum baldaniorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum baldaniorum	0.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	32.68 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	1.96 %
Sphingomonas segetis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	1.31 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	0.65 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	0.65 %
Azospirillum baldaniorum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum baldaniorum	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573000\|GPBTN7E02FR1KA	Not Available	510	Open in IMG/M
3300001989\|JGI24739J22299_10199687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	587	Open in IMG/M
3300002074\|JGI24748J21848_1057841	Not Available	514	Open in IMG/M
3300002239\|JGI24034J26672_10004459	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1987	Open in IMG/M
3300004081\|Ga0063454_100665769	Not Available	776	Open in IMG/M
3300004114\|Ga0062593_102286456	Not Available	608	Open in IMG/M
3300004463\|Ga0063356_100450260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1680	Open in IMG/M
3300004463\|Ga0063356_100744580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1356	Open in IMG/M
3300004480\|Ga0062592_101443070	Not Available	657	Open in IMG/M
3300005093\|Ga0062594_100082743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1829	Open in IMG/M
3300005093\|Ga0062594_100154332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1511	Open in IMG/M
3300005327\|Ga0070658_10454824	Not Available	1103	Open in IMG/M
3300005327\|Ga0070658_11372244	Not Available	613	Open in IMG/M
3300005327\|Ga0070658_11726831	Not Available	542	Open in IMG/M
3300005328\|Ga0070676_10906873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	657	Open in IMG/M
3300005335\|Ga0070666_10868319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	666	Open in IMG/M
3300005338\|Ga0068868_101067977	Not Available	741	Open in IMG/M
3300005339\|Ga0070660_101503460	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	572	Open in IMG/M
3300005341\|Ga0070691_10006762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	5248	Open in IMG/M
3300005344\|Ga0070661_100677235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	839	Open in IMG/M
3300005345\|Ga0070692_11223283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	536	Open in IMG/M
3300005353\|Ga0070669_100691014	Not Available	861	Open in IMG/M
3300005353\|Ga0070669_100805890	Not Available	798	Open in IMG/M
3300005356\|Ga0070674_101242052	Not Available	663	Open in IMG/M
3300005356\|Ga0070674_101442191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	617	Open in IMG/M
3300005366\|Ga0070659_101082581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	706	Open in IMG/M
3300005438\|Ga0070701_10690762	Not Available	685	Open in IMG/M
3300005440\|Ga0070705_100450608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	965	Open in IMG/M
3300005457\|Ga0070662_100242102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1447	Open in IMG/M
3300005457\|Ga0070662_100612271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	917	Open in IMG/M
3300005459\|Ga0068867_101586452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	611	Open in IMG/M
3300005530\|Ga0070679_100899275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	829	Open in IMG/M
3300005539\|Ga0068853_100047951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3667	Open in IMG/M
3300005564\|Ga0070664_101101313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	748	Open in IMG/M
3300005564\|Ga0070664_102322835	Not Available	509	Open in IMG/M
3300005577\|Ga0068857_101534045	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	650	Open in IMG/M
3300005614\|Ga0068856_100005840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	12131	Open in IMG/M
3300005614\|Ga0068856_100057657	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3834	Open in IMG/M
3300005614\|Ga0068856_100225828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1888	Open in IMG/M
3300005614\|Ga0068856_101454308	Not Available	699	Open in IMG/M
3300005614\|Ga0068856_102448050	Not Available	529	Open in IMG/M
3300005615\|Ga0070702_100314153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1089	Open in IMG/M
3300005616\|Ga0068852_101341171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	737	Open in IMG/M
3300005617\|Ga0068859_101748425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	687	Open in IMG/M
3300005617\|Ga0068859_101981095	Not Available	643	Open in IMG/M
3300005617\|Ga0068859_102713763	Not Available	544	Open in IMG/M
3300005718\|Ga0068866_10146167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1363	Open in IMG/M
3300005840\|Ga0068870_10198388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1215	Open in IMG/M
3300005840\|Ga0068870_11335492	Not Available	523	Open in IMG/M
3300005842\|Ga0068858_100974735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	830	Open in IMG/M
3300005843\|Ga0068860_101978638	Not Available	604	Open in IMG/M
3300005843\|Ga0068860_102284079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	561	Open in IMG/M
3300006173\|Ga0070716_101401844	Not Available	568	Open in IMG/M
3300006237\|Ga0097621_100947071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	804	Open in IMG/M
3300006880\|Ga0075429_101374579	Not Available	615	Open in IMG/M
3300009098\|Ga0105245_11181333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	813	Open in IMG/M
3300009168\|Ga0105104_10631224	Not Available	611	Open in IMG/M
3300009174\|Ga0105241_12399197	Not Available	526	Open in IMG/M
3300009176\|Ga0105242_10404485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1275	Open in IMG/M
3300009177\|Ga0105248_10213641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2173	Open in IMG/M
3300009177\|Ga0105248_10378186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1594	Open in IMG/M
3300009177\|Ga0105248_13062854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	532	Open in IMG/M
3300009545\|Ga0105237_10565012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1144	Open in IMG/M
3300009551\|Ga0105238_12158076	Not Available	592	Open in IMG/M
3300010396\|Ga0134126_10180209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2541	Open in IMG/M
3300010401\|Ga0134121_10314931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1390	Open in IMG/M
3300011119\|Ga0105246_10004152	All Organisms → cellular organisms → Bacteria → Proteobacteria	8797	Open in IMG/M
3300011119\|Ga0105246_11275799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	680	Open in IMG/M
3300012212\|Ga0150985_116228090	Not Available	616	Open in IMG/M
3300012469\|Ga0150984_109442211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum baldaniorum	928	Open in IMG/M
3300012908\|Ga0157286_10326899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	571	Open in IMG/M
3300012951\|Ga0164300_10555367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	668	Open in IMG/M
3300012986\|Ga0164304_10881429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	698	Open in IMG/M
3300012989\|Ga0164305_11102455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	682	Open in IMG/M
3300013100\|Ga0157373_10059036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2718	Open in IMG/M
3300013100\|Ga0157373_10063118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2624	Open in IMG/M
3300013100\|Ga0157373_10406580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	976	Open in IMG/M
3300013100\|Ga0157373_10596306	Not Available	804	Open in IMG/M
3300013102\|Ga0157371_10072695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2435	Open in IMG/M
3300013102\|Ga0157371_10164513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1584	Open in IMG/M
3300013102\|Ga0157371_10563957	Not Available	845	Open in IMG/M
3300013102\|Ga0157371_11406713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	542	Open in IMG/M
3300013102\|Ga0157371_11523037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	522	Open in IMG/M
3300013102\|Ga0157371_11592509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	511	Open in IMG/M
3300013104\|Ga0157370_10172808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2008	Open in IMG/M
3300013105\|Ga0157369_11057182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	830	Open in IMG/M
3300013105\|Ga0157369_11648578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	652	Open in IMG/M
3300013296\|Ga0157374_12046519	Not Available	599	Open in IMG/M
3300013297\|Ga0157378_11862227	Not Available	650	Open in IMG/M
3300013306\|Ga0163162_12304315	Not Available	619	Open in IMG/M
3300013307\|Ga0157372_11725264	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300013307\|Ga0157372_12385200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	607	Open in IMG/M
3300013308\|Ga0157375_10206627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2120	Open in IMG/M
3300014969\|Ga0157376_11099139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	821	Open in IMG/M
3300015371\|Ga0132258_13423377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1089	Open in IMG/M
3300015374\|Ga0132255_103874204	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300020070\|Ga0206356_10016647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1558	Open in IMG/M
3300025903\|Ga0207680_10336154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1059	Open in IMG/M
3300025904\|Ga0207647_10010940	All Organisms → cellular organisms → Bacteria	6382	Open in IMG/M
3300025907\|Ga0207645_10427409	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300025908\|Ga0207643_10191293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1242	Open in IMG/M
3300025908\|Ga0207643_10976479	Not Available	548	Open in IMG/M
3300025909\|Ga0207705_10208521	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1482	Open in IMG/M
3300025909\|Ga0207705_11076403	Not Available	620	Open in IMG/M
3300025911\|Ga0207654_11389263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	512	Open in IMG/M
3300025913\|Ga0207695_11200221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	639	Open in IMG/M
3300025917\|Ga0207660_10300185	Not Available	1279	Open in IMG/M
3300025917\|Ga0207660_10495590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas segetis	991	Open in IMG/M
3300025919\|Ga0207657_10459656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	999	Open in IMG/M
3300025920\|Ga0207649_10135326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1679	Open in IMG/M
3300025920\|Ga0207649_11025536	Not Available	650	Open in IMG/M
3300025920\|Ga0207649_11472922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	539	Open in IMG/M
3300025923\|Ga0207681_10649303	Not Available	875	Open in IMG/M
3300025925\|Ga0207650_11321690	Not Available	614	Open in IMG/M
3300025925\|Ga0207650_11591476	Not Available	555	Open in IMG/M
3300025932\|Ga0207690_10006278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	7039	Open in IMG/M
3300025932\|Ga0207690_10579627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	914	Open in IMG/M
3300025933\|Ga0207706_11343416	Not Available	589	Open in IMG/M
3300025936\|Ga0207670_10756617	Not Available	807	Open in IMG/M
3300025941\|Ga0207711_10529325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1099	Open in IMG/M
3300025941\|Ga0207711_10552391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1074	Open in IMG/M
3300025944\|Ga0207661_11812736	Not Available	556	Open in IMG/M
3300025945\|Ga0207679_10153666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1876	Open in IMG/M
3300025945\|Ga0207679_10226761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1575	Open in IMG/M
3300025945\|Ga0207679_12051730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	520	Open in IMG/M
3300025960\|Ga0207651_10213308	Not Available	1555	Open in IMG/M
3300025981\|Ga0207640_10206771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1492	Open in IMG/M
3300025981\|Ga0207640_10682772	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	878	Open in IMG/M
3300026023\|Ga0207677_12192531	Not Available	514	Open in IMG/M
3300026067\|Ga0207678_10501026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1058	Open in IMG/M
3300026078\|Ga0207702_10186331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1914	Open in IMG/M
3300026078\|Ga0207702_11411720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	690	Open in IMG/M
3300026089\|Ga0207648_11599388	Not Available	612	Open in IMG/M
3300026142\|Ga0207698_10448496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1245	Open in IMG/M
3300026142\|Ga0207698_11941490	Not Available	603	Open in IMG/M
3300027725\|Ga0209178_1220165	Not Available	678	Open in IMG/M
3300028379\|Ga0268266_10767931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	930	Open in IMG/M
3300028381\|Ga0268264_12121609	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	570	Open in IMG/M
3300028590\|Ga0247823_10158464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1727	Open in IMG/M
3300028608\|Ga0247819_10367947	Not Available	822	Open in IMG/M
3300028889\|Ga0247827_11352288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	500	Open in IMG/M
3300031740\|Ga0307468_101976282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	558	Open in IMG/M
3300031824\|Ga0307413_10444963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1027	Open in IMG/M
3300031858\|Ga0310892_10917536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	614	Open in IMG/M
3300031943\|Ga0310885_10466863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	683	Open in IMG/M
3300031944\|Ga0310884_10050541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1862	Open in IMG/M
3300031996\|Ga0308176_10860479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	950	Open in IMG/M
3300032000\|Ga0310903_10439645	Not Available	671	Open in IMG/M
3300032004\|Ga0307414_11289390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	677	Open in IMG/M
3300032005\|Ga0307411_11544180	Not Available	611	Open in IMG/M
3300032013\|Ga0310906_11168281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	559	Open in IMG/M
3300032211\|Ga0310896_10816406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	75.16%
Environmental	Environmental	24.84%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	75.16%
Terrestrial	Environmental → Terrestrial	24.18%
Aquatic	Environmental → Aquatic	0.65%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	48.37%
Rhizoplane	Host-Associated → Plants → Rhizoplane	26.14%
Soil	Environmental → Terrestrial → Soil	24.18%
Freshwater	Environmental → Aquatic → Freshwater	0.65%
Roots	Host-Associated → Plants → Roots	0.65%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	24.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	24.18%
Soil	Host-Associated → Plants → Rhizosphere → Soil	24.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	16.34%
Loam	Environmental → Terrestrial → Soil → Loam	7.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.96%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	24.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	24.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	24.18%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.19%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	4.58%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.96%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.65%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.65%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.65%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	15.03%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	10.46%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	9.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.19%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.88%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.27%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.61%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.61%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.61%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.96%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.31%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.31%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.31%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.65%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.65%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573000	Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO 1O1 lysis 0-21cm (T0 for microcosms)	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300002074	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1	Host-Associated	Open in IMG/M
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028608	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Xylose_Day6	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031943	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
N55_10667680	2189573000	Grass Soil	EKSAISWDKNVAPTLGQRLSYERGTSASHQPCALNLMTI
JGI24739J22299_101996871	3300001989	Corn Rhizosphere	RFERSAFSWDNDSVPTVGQRLSYDVGTSKESHPCALNLATI*
JGI24748J21848_10578412	3300002074	Corn, Switchgrass And Miscanthus Rhizosphere	AKGLGEIKPEVAGNDIRFETSAILWDKKVPPVVGQRLSYDVGTGSDRQPTALNLQTI*
JGI24034J26672_100044593	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	IKPETGGNDLGFEKSSIQWDKNIAPTVGQRLSYDVGTNNERQPCALNLQTV*
Ga0063454_1006657691	3300004081	Soil	PLRFEVGAIMWDKKIAPVIGQRLSYDVGQGVDRQPTALNLQTI*
Ga0062593_1022864561	3300004114	Soil	QGRGEIKPETGGNDLPFEKSAIQWDKNVDPTVGQRLSYDVGQTSERHPCALNLQTI*
Ga0063356_1004502603	3300004463	Arabidopsis Thaliana Rhizosphere	TGGDMLGFERSAFSWENGSVPTVGQRLSYDVGTSKDRHPCALNLATI*
Ga0063356_1007445802	3300004463	Arabidopsis Thaliana Rhizosphere	TQEAGGDDLRFEKSAISWDKDIAPTLGQRLSYERGTSNDRQPCALNLMTI*
Ga0062592_1014430702	3300004480	Soil	MKYFGTVTSYDPVKGNGELKQEVGGTDLPFEKTAFQWDKDVAPSIGQRLSYDIGQSSDRRSCALNLQTI*
Ga0062594_1000827437	3300005093	Soil	QETGGNDLPFEKSAIQWDQNVDPTIGQRLSYDVGQTSERRPCAINLQTI*
Ga0062594_1001543321	3300005093	Soil	KGHGEIKQEAGGNDLRFETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNLQTI*
Ga0070658_104548242	3300005327	Corn Rhizosphere	GNDLRFETAAIMWDKNIAPVIGQRLSYDVGQNAERHPRALNLQTI*
Ga0070658_113722441	3300005327	Corn Rhizosphere	NDLRFETSAIMWDKNVAPVIGQRLSYDVGQSPERHPCALNVQTI*
Ga0070658_117268312	3300005327	Corn Rhizosphere	KPETGGDMLRFERSAFSWENNAVPTVGQRLSYDVGTNPERQPCALNLQTI*
Ga0070676_109068731	3300005328	Miscanthus Rhizosphere	GDAIRFETSAIMWDKNVAPTIGQRLSYDVGTNNERQPRALNLMTI*
Ga0070666_108683191	3300005335	Switchgrass Rhizosphere	EAGGNDLPFEKSAIAWAKNIVPTLGQRLSYDVGTGTDRQPCALNLQTV*
Ga0068868_1010679772	3300005338	Miscanthus Rhizosphere	PLRFEIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV*
Ga0070660_1015034601	3300005339	Corn Rhizosphere	GEIKQEAGGNDLGFEKAAISWDKNIAPTIGQRLSYDLGTTTDRKPCALNLQTI*
Ga0070691_100067621	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	IKGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI*
Ga0070661_1006772353	3300005344	Corn Rhizosphere	QEAGGNDLPFETSAIQWDKNVAPAVGQRLSYDVGQTRERAPCALNLQTI*
Ga0070692_112232831	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	GGNDLRFETSAIMWDKNVAPVIGQRLSYDVGQSPERHPCALNVQTI*
Ga0070669_1006910143	3300005353	Switchgrass Rhizosphere	PEVAGNPLRFEIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV*
Ga0070669_1008058901	3300005353	Switchgrass Rhizosphere	KGHGEIKPEAGGNDLPFETSAIQWDKTVAPTVGQRLSYDVGQTSARAPCALNLQTI*
Ga0070674_1012420521	3300005356	Miscanthus Rhizosphere	LPFEKSAIAWAKNIVPTLGQRLSYDVGTGTDRQPCALNLQTV*
Ga0070674_1014421911	3300005356	Miscanthus Rhizosphere	DMLGFERSAFAWTGDTIPTVGQRLSYDVGTNEQRQPCALNLQTI*
Ga0070659_1010825811	3300005366	Corn Rhizosphere	RFETSAIQWDKNIAPTIGQRLSYDVGQSSDRQPCALNLQTI*
Ga0070701_106907621	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	FDVTQGRGEIKPETGGNDLPFEKSAIQWDKNVDPTVGQRLSYDVGQTSERHPCALNLQTI
Ga0070705_1004506082	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	DMLRFERSAFSWENDSVPTVGQRLSYDVGTSKESHPCALNLATI*
Ga0070662_1002421024	3300005457	Corn Rhizosphere	KPETGGDMLRFERSAFSWEKNAVPTVGQRLSYDVGTNTQRQPCALNLQTI*
Ga0070662_1006122713	3300005457	Corn Rhizosphere	FDTIKGHGEIKQEAGGNDLRFETSAIMWDKNVAPVIGQRLSYDVGQTPERHPCALNLQTI
Ga0068867_1015864521	3300005459	Miscanthus Rhizosphere	GGNDLPFEKSAIAWAKNIVPTLGQRLSYDVGTGTDRQPCALNLQTV*
Ga0070679_1008992752	3300005530	Corn Rhizosphere	IKQEAGGNDLPFETAAISWDKKVAPTVGQRLSYDVGTNTERQPCALNLQTI*
Ga0068853_1000479511	3300005539	Corn Rhizosphere	GDMLRFESSAFSWEDKSVPMVGQRLSYDVGTTKERQPCALNLETI*
Ga0070664_1011013132	3300005564	Corn Rhizosphere	MLRFERSAFSWEKNAVPTVGQRLSYDVGTNTQRQPCALNLQTI*
Ga0070664_1023228351	3300005564	Corn Rhizosphere	GHGEIKQEAGGNDLPFETSAIQWDKTVAPTIGQRLSYDVGQSSQRQPCALNLQTI*
Ga0068857_1015340453	3300005577	Corn Rhizosphere	FERSAFSWENDSVPAVGQRLSYDVGTSKDRQPCALNLATI*
Ga0068856_1000058401	3300005614	Corn Rhizosphere	QEAGGNDLPFETSAIQWDKNVAPTVGQRLSYDVGQTSERVPCALNLQTI*
Ga0068856_1000576571	3300005614	Corn Rhizosphere	RFERGAFSWENKAVPTVGQRLSYDVGTTNERQPCALNLQTI*
Ga0068856_1002258284	3300005614	Corn Rhizosphere	TGGDMLRFERGAFSWENKAVPTVGQRLSYDVGTNNERQPCALNLQTI*
Ga0068856_1014543083	3300005614	Corn Rhizosphere	NPEVAGNPIRFEVGAILWDKEVSPVIGQRLSYDVGQGVDRQPTALNLQTI*
Ga0068856_1024480503	3300005614	Corn Rhizosphere	SWDKNIAPTIGQRLSYDLGTTTDRKPCALNLQTI*
Ga0070702_1003141531	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	GNDIRFETSAILWDKKVPPVVGQRLSYDVGTGSDRQPTALNLQTI*
Ga0068852_1013411712	3300005616	Corn Rhizosphere	LRFEKSAIAWDKNIHPTVGQRLSYDVGTSTDRQPCALNLQTI*
Ga0068859_1017484251	3300005617	Switchgrass Rhizosphere	SWDKNIAPTVGQRLSYDVGTNNERQPCALNLMTV*
Ga0068859_1019810953	3300005617	Switchgrass Rhizosphere	IKQEAGGNDLPFETSAIQWDKTVAPTIGQRLSYDVGQSSQRQPCALNLQTI*
Ga0068859_1027137632	3300005617	Switchgrass Rhizosphere	EKSAIAWDNDIAPTLGQRLSYEKGTSADHKPCALNLMTI*
Ga0068866_101461673	3300005718	Miscanthus Rhizosphere	IKQEAGGNDLRFETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNFQTI*
Ga0068870_101983883	3300005840	Miscanthus Rhizosphere	GGNDLRFETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNLQTI*
Ga0068870_113354923	3300005840	Miscanthus Rhizosphere	EAGGNDLPFETSAIQWDKTVAPTIGQRLSYDVGQSSQRQPCALNLQTI*
Ga0068858_1009747353	3300005842	Switchgrass Rhizosphere	SWDKDTLPTVGQRLSYDVGTNNERQPCALNLQTI*
Ga0068860_1019786381	3300005843	Switchgrass Rhizosphere	EVAGNDIRFETSAILWDKKVPPVVGQRLSYDVGTGSDRQPTALNLQTI*
Ga0068860_1022840791	3300005843	Switchgrass Rhizosphere	RFEKSAISWDKNIAPTVGQRLSYDVGTNNERQPCALNLMTV*
Ga0070716_1014018441	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	GNDLRFETSAIMWDKNVAPVIGQRLSYDVGQTPERHPCALNLQTI*
Ga0097621_1009470712	3300006237	Miscanthus Rhizosphere	VKSFDTIKGHGEIKQEAGGNDLPFKTSAILWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI*
Ga0075429_1013745792	3300006880	Populus Rhizosphere	SAFSWENNNVPTVGQRLSYDVGTTKERQPCALNLATI*
Ga0105245_111813331	3300009098	Miscanthus Rhizosphere	RFEKSAISWDKNVAPTEGQRLSYERGTAADHKPCALNLMTI*
Ga0105104_106312242	3300009168	Freshwater Sediment	ERSAFSWENGSVPAVGQRLSYDVGTSKESLPCALNLATI*
Ga0105241_123991971	3300009174	Corn Rhizosphere	MLRFERGAFSWENKAVPTVGQRLSYDVGTNNERQPCALNLQTI*
Ga0105242_104044851	3300009176	Miscanthus Rhizosphere	SSIQWDKNIAPTVGQRLSYDVGTNNERQPCALNLQTV*
Ga0105248_102136411	3300009177	Switchgrass Rhizosphere	IQWDKSVAPTVGQRLSYDVGQSSESQPCALNLQTI*
Ga0105248_103781863	3300009177	Switchgrass Rhizosphere	EAGGNDLRFEKSAIAWDKNIHPTVGQRLSYDVGTSTDRQPCALNLQTI*
Ga0105248_130628541	3300009177	Switchgrass Rhizosphere	SWDKNVAPTVGQRLSYERGTSASHQPCALNLMTI*
Ga0105237_105650122	3300009545	Corn Rhizosphere	NDLGFEKSSIQWDKNIAPTVGQRLSYDVGTNHERQPCALNVQTV*
Ga0105238_121580761	3300009551	Corn Rhizosphere	MWDKNIAPVIGQRLGYDVGQTPERHPCALNLQTI*
Ga0134126_101802097	3300010396	Terrestrial Soil	QWDKNVAPTIGQRLSYDVGQTSERQACALNLQTI*
Ga0134121_103149315	3300010401	Terrestrial Soil	LPFETSAIQWDKNVAPTVGQRLSYDVGQTGERQPCALNLQTI*
Ga0105246_1000415213	3300011119	Miscanthus Rhizosphere	DPRHDIPVEAGGNDLRFETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNLQTI*
Ga0105246_112757991	3300011119	Miscanthus Rhizosphere	KSAISWDKNVAPTVGQRLSYERGTSASHQPCALNLMTI*
Ga0150985_1162280901	3300012212	Avena Fatua Rhizosphere	VGAILWDKKIAPVIGQRLSYDVGHGVDRQPTALKLQTI*
Ga0150984_1094422111	3300012469	Avena Fatua Rhizosphere	GAILWDKKIAPVIGQRLSYDVGHGVDRQPTALNVQTI*
Ga0157286_103268992	3300012908	Soil	RSAFSWDNDSVPTVGQRLSYDVGTSKESHPCALNLATI*
Ga0164300_105553672	3300012951	Soil	GEIKQEAGGNDLGFQKSAIGWDKNIAPTVGQRLSYDVGTNNERQPCALNLQTI*
Ga0164304_108814291	3300012986	Soil	DLRFEKSAIAWDKNIHPTVGQRLSYDVGTSTDRQPCALNLQTI*
Ga0164305_111024552	3300012989	Soil	DLSTGHGEIKQEAGGNDLRFEKSAIAWDKNIHPTVGQRLSYDVGTSTDRQPCALNLQTI*
Ga0157373_100590361	3300013100	Corn Rhizosphere	PETGGDMLRFERGAFSWENKAVPTVGQRLSYDVGTNNERQPCALNLQTI*
Ga0157373_100631188	3300013100	Corn Rhizosphere	FETSAIMWDKNVAPVIGQRLSYDVGQTPERHPCALNLQTI*
Ga0157373_104065801	3300013100	Corn Rhizosphere	NDLRFETSAIQWDKSIAPTVGQRLSYDVGQSSDRAPCALNLQKI*
Ga0157373_105963061	3300013100	Corn Rhizosphere	QEAGGDDLRFEKGVISWDKTVAPTVGQRLSYERGTSADHKPCALNLMTI*
Ga0157371_100726951	3300013102	Corn Rhizosphere	IKQEAGGNDLRFETSAIMWDKNVAPVIGQRLSYDVGQSPERHPCALNVQTI*
Ga0157371_101645135	3300013102	Corn Rhizosphere	GEIKPETGGNDLPFEKSAIQWDKNVDPTVGQRLSYDVGQTSERHPCALNLQTI*
Ga0157371_105639571	3300013102	Corn Rhizosphere	IKGHGEIKQEAGGNDLRFETSAIQWDKNIAPTIGQRLSYDVGQSSDRQPCALNLQTI*
Ga0157371_114067131	3300013102	Corn Rhizosphere	KSAISWDKNVAPTQGQRLSYERGTSADRKPCALNLMTI*
Ga0157371_115230372	3300013102	Corn Rhizosphere	SAISWDKDIAPTLGQRLSYERGTSNDRQPCALNLMTI*
Ga0157371_115925091	3300013102	Corn Rhizosphere	RFEKSAISWDKNVAPTQGQRLSYERGTAADHKPCALNLMTI*
Ga0157370_101728081	3300013104	Corn Rhizosphere	IMWDKNVAPVIGQRLSYDVGQTPERHPCALNLQTI*
Ga0157369_110571822	3300013105	Corn Rhizosphere	GEIIQEAGGNDLRFETSAIQWDKNIAPKVGQRLSYDVGQSSNRAPCALNLQTI*
Ga0157369_116485782	3300013105	Corn Rhizosphere	ETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNLQTI*
Ga0157374_120465191	3300013296	Miscanthus Rhizosphere	GEIKQEAGGNDLPFETSAIQWDKSVAPTVGQRLSYDVGQTSERAPCALNLQTI*
Ga0157378_118622271	3300013297	Miscanthus Rhizosphere	TGGNDLPFEKSAIQWDKNVDPTVGQRLSYDVGQTSERHPCALNLQTI*
Ga0163162_123043151	3300013306	Switchgrass Rhizosphere	TSAIQWDKNVAPTVGQRLSYDVGQSNERLPCALNLQTI*
Ga0157372_117252643	3300013307	Corn Rhizosphere	EAGGNDLHFNKSAIAWGKEIAPVVGQRLSYDVGTDTDRQPCALNLQTI*
Ga0157372_123852002	3300013307	Corn Rhizosphere	DLRFETSAIQWDKNVAPTVGQRLSYDVGQTNDRQPCALNLQTI*
Ga0157375_102066271	3300013308	Miscanthus Rhizosphere	EIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV*
Ga0157376_110991391	3300014969	Miscanthus Rhizosphere	GEIKQEAGGNDLPFETGAIQWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI*
Ga0132258_134233771	3300015371	Arabidopsis Rhizosphere	KPEAGGDMLRFERSAFSWENDSVPTVGQRLSYDVGTTSERQPCALNLATI*
Ga0132255_1038742042	3300015374	Arabidopsis Rhizosphere	KPEAGGDMLRFERSAFSWDNDSVPTVGQRLSYDVGTSKESHPCALNLATI*
Ga0206356_100166471	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	TIKGHGEIKQEAGGNDLRFETSAIMWDKNVAPVIGQRLSYDVGQSPERHPCALNLQTI
Ga0207680_103361541	3300025903	Switchgrass Rhizosphere	AFSWENDSVPTVGQRLSYDVGTSKESHPCALNLATI
Ga0207647_100109401	3300025904	Corn Rhizosphere	IKGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSYDVGQNSERVPCALNLQTI
Ga0207645_104274091	3300025907	Miscanthus Rhizosphere	AFSWEKNAVPTVGQRLSYDVGTNTQRQPCALNLQTI
Ga0207643_101912931	3300025908	Miscanthus Rhizosphere	GHGEIKQEAGGNDLRFETSAIKWDKNVAPTIGQRLSYDIGQNSERQPCALNLQTI
Ga0207643_109764793	3300025908	Miscanthus Rhizosphere	SAIQWDKTVAPTIGQRLSYDVGQSSQRQPCALNLQTI
Ga0207705_102085211	3300025909	Corn Rhizosphere	IKQEAGGNDLRFETSAIQWDKNIAPTVGQRLSYDVGQTSDRAPCALNLQTI
Ga0207705_110764032	3300025909	Corn Rhizosphere	DMLRFERSAFSWKNDAVPSVGQRLSYDVGTNTERQPCALNLQTI
Ga0207654_113892631	3300025911	Corn Rhizosphere	KSFDTIKGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI
Ga0207695_112002212	3300025913	Corn Rhizosphere	MLRFERSAFSWENNAVPTVGQRLSYDVGTTPQRQPCALNLQTI
Ga0207660_103001852	3300025917	Corn Rhizosphere	LRFETSAIMWDKNVAPVIGQRLSYDVGQSPERHPCALNVQTI
Ga0207660_104955901	3300025917	Corn Rhizosphere	IQWDKNVAPTVGQRLSYDVGQNSERAPCALNLQTI
Ga0207657_104596561	3300025919	Corn Rhizosphere	FEKSAISWDKNVAPTVGQRLSYERGTSASHQPCALNLMTI
Ga0207649_101353265	3300025920	Corn Rhizosphere	KGHGEIKQEAGGNDLPFETSAIQWDKNVAPAVGQRLSYDVGQTRERAPCALNLQTI
Ga0207649_110255361	3300025920	Corn Rhizosphere	ETGGNDLPFEKSAIAWGNDVDPTLGQRLSYDVGQSSDRQPCALNLQTI
Ga0207649_114729221	3300025920	Corn Rhizosphere	GHGEIKQEAGGNDLRFETSAIQWDKNVAPTVGQRLSYDVGQTNDRQPCALNLQTI
Ga0207681_106493031	3300025923	Switchgrass Rhizosphere	LRFEIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV
Ga0207650_113216901	3300025925	Switchgrass Rhizosphere	FSWKNDHVPTVGQRLSYDVGTTKERQPCALNLATI
Ga0207650_115914761	3300025925	Switchgrass Rhizosphere	MKYFGTVTSYDPVKGNGELKQEVGGTDLPFEKTAFQWDKDVAPSIGQRLSYDIGQSSDRRSCALNLQTI
Ga0207690_100062781	3300025932	Corn Rhizosphere	LRFEKSAISWDKNVAPTPGQRLSYERGTATDHKPCALNLMTI
Ga0207690_105796271	3300025932	Corn Rhizosphere	RSAFSWEKNTVPTVGQRLSYEVGTNPQRQPCALNLQTI
Ga0207706_113434161	3300025933	Corn Rhizosphere	DLPFEKSAIQWDQNVDPTIGQRLSYDVGQTSERRPCAINLQTI
Ga0207670_107566173	3300025936	Switchgrass Rhizosphere	IQWDKTVAPTVGQRLSYDVGQTSARAPCALNLQTI
Ga0207711_105293255	3300025941	Switchgrass Rhizosphere	IQWDKTVAPTIGQRLSYDVGQSSQRQPCALNLQTI
Ga0207711_105523914	3300025941	Switchgrass Rhizosphere	AIQWDKSVAPTVGQRLSYDVGQSSESQPCALNLQTI
Ga0207661_118127361	3300025944	Corn Rhizosphere	KQEAGGDDLHFDKSAIAWDQSVAPTQGQRISYERGIMPDRQPCALNLQTI
Ga0207679_101536664	3300025945	Corn Rhizosphere	RFEKSAIAWDNDIAPTLGQRLSYEKGTSADHKPCALNLMTI
Ga0207679_102267613	3300025945	Corn Rhizosphere	KGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSYDVGQNSERVPCALNLQTI
Ga0207679_120517301	3300025945	Corn Rhizosphere	MLRFERSAFSWEKNAVPTVGQRLSYDVGTNTQRQPCALNLQTI
Ga0207651_102133084	3300025960	Switchgrass Rhizosphere	SPLRFEIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV
Ga0207640_102067711	3300025981	Corn Rhizosphere	AGGNDLPFETSAIQWDKNVAPAVGQRLSYDVGQTRERAPCALNLQTI
Ga0207640_106827722	3300025981	Corn Rhizosphere	LRFETSAIQWDKNIAPKVGQRLSYDVGQSSDRAPCALNLQTI
Ga0207677_121925312	3300026023	Miscanthus Rhizosphere	FETSAILWDKKVPPVVGQRLSYDVGTGSDRQPTALNLQTI
Ga0207678_105010263	3300026067	Corn Rhizosphere	KGLGEITQEAGGDDLRFDKSAIQWDQNVAPTVGQRLTYDRGIMADRQPCAMNLMTI
Ga0207702_101863314	3300026078	Corn Rhizosphere	IKPETGGDMLRFERGAFSWENKAVPTVGQRLSYDVGTNNERQPCALNLQTI
Ga0207702_114117201	3300026078	Corn Rhizosphere	TSAIQWDKNVAPTVGQRLSYDVGQTGERQPCALNLQTI
Ga0207648_115993882	3300026089	Miscanthus Rhizosphere	GGNDLPFEKSAIAWAKNIVPTLGQRLSYDVGTGTDRQPCALNLQTV
Ga0207698_104484961	3300026142	Corn Rhizosphere	STGHGEIKQEAGGNDLRFEKSAIAWDKNIHPTVGQRLSYDVGTSTDRQPCALNLQTI
Ga0207698_119414901	3300026142	Corn Rhizosphere	EVAGSPLRFEIGAIMWDKKVAPVIGQRLSYDVGQGTDRQPTALNLQTV
Ga0209178_12201651	3300027725	Agricultural Soil	HGEIKQEAGGNDLPFETSAIQWEKNVAPTVGQRLSYDVGQTSERQPCALNLQTI
Ga0268266_107679311	3300028379	Switchgrass Rhizosphere	AIAWDQSVAPTQGQRISYERGIMPDRQPCALNLQTI
Ga0268264_121216091	3300028381	Switchgrass Rhizosphere	ELRFEKSAISWDKNIAPTVGQRLSYDVGTNNERQPCALNLMTV
Ga0247823_101584641	3300028590	Soil	RSAFSWDNDSVPTVGQRLSYDVGTSKESHPCALNLATI
Ga0247819_103679472	3300028608	Soil	AFSWPKDIVPTIGQRLSYDVGTNNQLSCALNLQTI
Ga0247827_113522881	3300028889	Soil	FEKSAIQWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI
Ga0307468_1019762821	3300031740	Hardwood Forest Soil	ERSAFSWEKNSVPTVGQRLSYDVGTNKERQPCALNLQTI
Ga0307413_104449631	3300031824	Rhizosphere	FERSAFSWEDNSVPTVGQRLSYDVGTTKERQPCALNLETI
Ga0310892_109175362	3300031858	Soil	VSWAENAAPTVGQRLSYDVGTNGQRQPCALNLQTI
Ga0310885_104668633	3300031943	Soil	SAFTWDKDVVPTVGQRLSYDKGTSNEQPAALNLQSI
Ga0310884_100505416	3300031944	Soil	TIKGHGEIKQEAGGNDLPFEKSAIQWDKNVAPTVGQRLSYDVGQTSERAPCALNLQTI
Ga0308176_108604792	3300031996	Soil	LRFERGAFSWEKNAVPTVGQRLSYDVGTDTARQPCALNLQTI
Ga0310903_104396452	3300032000	Soil	GNDLPFEKSAIQWDQNVDPTIGQRLSYDVGQTSERRPCAINLQTI
Ga0307414_112893901	3300032004	Rhizosphere	GGDDLRFEKSAISWDKDIAPTLGQRLSYERGTSNDRQPCALNLMTI
Ga0307411_115441802	3300032005	Rhizosphere	GAFSWAENSVPAVGQRLSYDRGTDKDRQPCAVNLETI
Ga0310906_111682811	3300032013	Soil	PETGGDPLRFERAAVSWAENAAPTVGQRLSYDVGTNGQRQPCALNLQTI
Ga0308173_101709131	3300032074	Soil	ITQETGGDDLRFETTAIMWDKKIAPVIGQRLSYERGANDERQPRALNLMTI
Ga0310896_108164062	3300032211	Soil	QEAGGDMLPFDRSAFTWDKDVVPTVGQRLSYDKGTSNEQPAALNLQSI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F045293

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences