NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F045135

Metagenome / Metatranscriptome Family F045135

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F045135
Family Type Metagenome / Metatranscriptome
Number of Sequences 153
Average Sequence Length 46 residues
Representative Sequence YRRLHEAPVQNLTALRDAAQRLDQLDRGRAALLRDLKALAD
Number of Associated Samples 139
Number of Associated Scaffolds 153

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.04 %
% of genes from short scaffolds (< 2000 bps) 89.54 %
Associated GOLD sequencing projects 132
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (80.392 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(34.641 % of family members)
Environment Ontology (ENVO) Unclassified
(22.222 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(47.712 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.07%    β-sheet: 0.00%    Coil/Unstructured: 44.93%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 153 Family Scaffolds
PF02016Peptidase_S66 60.13
PF02962CHMI 5.23
PF05960DUF885 2.61
PF14255Cys_rich_CPXG 1.96
PF05433Rick_17kDa_Anti 1.31
PF05843Suf 0.65
PF01963TraB_PrgY_gumN 0.65
PF02698DUF218 0.65
PF00665rve 0.65
PF02195ParBc 0.65
PF13450NAD_binding_8 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 153 Family Scaffolds
COG1619Muramoyltetrapeptide carboxypeptidase LdcA (peptidoglycan recycling)Cell wall/membrane/envelope biogenesis [M] 60.13
COG32325-carboxymethyl-2-hydroxymuconate isomeraseAmino acid transport and metabolism [E] 5.23
COG4805Uncharacterized conserved protein, DUF885 familyFunction unknown [S] 2.61
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.65
COG1916Pheromone shutdown protein TraB, contains GTxH motif (function unknown)Function unknown [S] 0.65
COG2801Transposase InsO and inactivated derivativesMobilome: prophages, transposons [X] 0.65
COG2826Transposase and inactivated derivatives, IS30 familyMobilome: prophages, transposons [X] 0.65
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.65
COG3316Transposase (or an inactivated derivative), DDE domainMobilome: prophages, transposons [X] 0.65
COG4584TransposaseMobilome: prophages, transposons [X] 0.65


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms81.05 %
UnclassifiedrootN/A18.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459010|GIO7OMY02FP28YAll Organisms → cellular organisms → Bacteria → Proteobacteria517Open in IMG/M
3300001661|JGI12053J15887_10020488All Organisms → cellular organisms → Bacteria → Proteobacteria3699Open in IMG/M
3300002909|JGI25388J43891_1063499All Organisms → cellular organisms → Bacteria → Proteobacteria559Open in IMG/M
3300002916|JGI25389J43894_1070134All Organisms → cellular organisms → Bacteria → Proteobacteria604Open in IMG/M
3300005178|Ga0066688_10440559All Organisms → cellular organisms → Bacteria → Proteobacteria843Open in IMG/M
3300005180|Ga0066685_10254180All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1212Open in IMG/M
3300005181|Ga0066678_10362383All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales957Open in IMG/M
3300005187|Ga0066675_10583572All Organisms → cellular organisms → Bacteria → Proteobacteria839Open in IMG/M
3300005518|Ga0070699_101078590All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales737Open in IMG/M
3300005529|Ga0070741_10377695All Organisms → cellular organisms → Bacteria1308Open in IMG/M
3300005529|Ga0070741_11279873All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005534|Ga0070735_10667831All Organisms → cellular organisms → Bacteria615Open in IMG/M
3300005537|Ga0070730_10452805All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300005544|Ga0070686_100034340All Organisms → cellular organisms → Bacteria → Proteobacteria3125Open in IMG/M
3300005576|Ga0066708_11031560All Organisms → cellular organisms → Bacteria → Proteobacteria510Open in IMG/M
3300005610|Ga0070763_10692514All Organisms → cellular organisms → Bacteria → Proteobacteria596Open in IMG/M
3300005617|Ga0068859_100146505All Organisms → cellular organisms → Bacteria → Proteobacteria2436Open in IMG/M
3300005712|Ga0070764_11059064All Organisms → cellular organisms → Bacteria → Proteobacteria513Open in IMG/M
3300005764|Ga0066903_109045106All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria504Open in IMG/M
3300006354|Ga0075021_10405645All Organisms → cellular organisms → Bacteria → Proteobacteria855Open in IMG/M
3300006797|Ga0066659_10842811All Organisms → cellular organisms → Bacteria → Proteobacteria762Open in IMG/M
3300007258|Ga0099793_10194183All Organisms → cellular organisms → Bacteria → Proteobacteria972Open in IMG/M
3300009093|Ga0105240_11202446Not Available803Open in IMG/M
3300009093|Ga0105240_12386338All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300009098|Ga0105245_13179078All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300009545|Ga0105237_12156052All Organisms → cellular organisms → Bacteria567Open in IMG/M
3300010048|Ga0126373_13296497All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300010303|Ga0134082_10088452All Organisms → cellular organisms → Bacteria → Proteobacteria1217Open in IMG/M
3300010322|Ga0134084_10451873All Organisms → cellular organisms → Bacteria → Proteobacteria512Open in IMG/M
3300010371|Ga0134125_12448237Not Available567Open in IMG/M
3300010373|Ga0134128_12107611All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300010373|Ga0134128_12848383All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300010376|Ga0126381_103429486Not Available623Open in IMG/M
3300010396|Ga0134126_10609961All Organisms → cellular organisms → Bacteria → Proteobacteria1248Open in IMG/M
3300011106|Ga0151489_1456669Not Available573Open in IMG/M
3300012361|Ga0137360_11868723All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria506Open in IMG/M
3300012362|Ga0137361_10216951All Organisms → cellular organisms → Bacteria → Proteobacteria1735Open in IMG/M
3300012918|Ga0137396_10042888All Organisms → cellular organisms → Bacteria → Proteobacteria3066Open in IMG/M
3300012924|Ga0137413_10031404All Organisms → cellular organisms → Bacteria → Proteobacteria2919Open in IMG/M
3300012929|Ga0137404_10313984All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1363Open in IMG/M
3300012951|Ga0164300_10334764All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia806Open in IMG/M
3300012988|Ga0164306_11220913All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales631Open in IMG/M
3300014168|Ga0181534_10208943All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1022Open in IMG/M
3300014325|Ga0163163_11693718All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300014658|Ga0181519_10528042All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300014968|Ga0157379_10525971All Organisms → cellular organisms → Bacteria → Proteobacteria1098Open in IMG/M
3300014969|Ga0157376_11587402All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300015242|Ga0137412_10710435All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Basidiomycota → Agaricomycotina → Agaricomycetes747Open in IMG/M
3300016270|Ga0182036_10542048All Organisms → cellular organisms → Bacteria → Proteobacteria926Open in IMG/M
3300016371|Ga0182034_11965180All Organisms → cellular organisms → Bacteria517Open in IMG/M
3300016387|Ga0182040_10235242All Organisms → cellular organisms → Bacteria → Proteobacteria1368Open in IMG/M
3300017924|Ga0187820_1032597All Organisms → cellular organisms → Bacteria → Proteobacteria1357Open in IMG/M
3300017927|Ga0187824_10251315All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales614Open in IMG/M
3300017937|Ga0187809_10123712All Organisms → cellular organisms → Bacteria881Open in IMG/M
3300017961|Ga0187778_10046893All Organisms → cellular organisms → Bacteria → Proteobacteria2639Open in IMG/M
3300017970|Ga0187783_10861286All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300017972|Ga0187781_10342720All Organisms → cellular organisms → Bacteria → Proteobacteria1063Open in IMG/M
3300017999|Ga0187767_10156333All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300018044|Ga0187890_10565913All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300018060|Ga0187765_10302952All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales959Open in IMG/M
3300018062|Ga0187784_10971522All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria675Open in IMG/M
3300018085|Ga0187772_10190359All Organisms → cellular organisms → Bacteria → Proteobacteria1374Open in IMG/M
3300019786|Ga0182025_1277295All Organisms → cellular organisms → Bacteria → Proteobacteria800Open in IMG/M
3300020580|Ga0210403_11113726Not Available613Open in IMG/M
3300020582|Ga0210395_10529058All Organisms → cellular organisms → Bacteria → Proteobacteria887Open in IMG/M
3300020583|Ga0210401_10710603Not Available866Open in IMG/M
3300021170|Ga0210400_11480993All Organisms → cellular organisms → Bacteria → Proteobacteria539Open in IMG/M
3300021171|Ga0210405_10488709Not Available965Open in IMG/M
3300021171|Ga0210405_10526390All Organisms → cellular organisms → Bacteria925Open in IMG/M
3300021178|Ga0210408_10009916All Organisms → cellular organisms → Bacteria → Proteobacteria7980Open in IMG/M
3300021178|Ga0210408_10138136All Organisms → cellular organisms → Bacteria → Proteobacteria1927Open in IMG/M
3300021180|Ga0210396_11730335Not Available507Open in IMG/M
3300021181|Ga0210388_10208002All Organisms → cellular organisms → Bacteria1712Open in IMG/M
3300021404|Ga0210389_11116130Not Available609Open in IMG/M
3300021405|Ga0210387_11299790Not Available629Open in IMG/M
3300021420|Ga0210394_10375185Not Available1251Open in IMG/M
3300021420|Ga0210394_11019165All Organisms → cellular organisms → Bacteria → Proteobacteria716Open in IMG/M
3300021433|Ga0210391_10455836All Organisms → cellular organisms → Bacteria → Proteobacteria1004Open in IMG/M
3300021477|Ga0210398_10828443All Organisms → cellular organisms → Bacteria → Proteobacteria744Open in IMG/M
3300021477|Ga0210398_11211378Not Available596Open in IMG/M
3300021559|Ga0210409_10016343All Organisms → cellular organisms → Bacteria → Proteobacteria7306Open in IMG/M
3300021560|Ga0126371_12578890Not Available616Open in IMG/M
3300022721|Ga0242666_1114632Not Available634Open in IMG/M
3300024330|Ga0137417_1017623All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300025911|Ga0207654_11020045All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300025912|Ga0207707_10485847All Organisms → cellular organisms → Bacteria → Proteobacteria1054Open in IMG/M
3300025913|Ga0207695_10345089All Organisms → cellular organisms → Bacteria → Proteobacteria1376Open in IMG/M
3300026326|Ga0209801_1376604All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300026340|Ga0257162_1017464All Organisms → cellular organisms → Bacteria → Proteobacteria855Open in IMG/M
3300026496|Ga0257157_1025330All Organisms → cellular organisms → Bacteria → Proteobacteria971Open in IMG/M
3300027480|Ga0208993_1007609All Organisms → cellular organisms → Bacteria → Proteobacteria1840Open in IMG/M
3300027562|Ga0209735_1099051All Organisms → cellular organisms → Bacteria635Open in IMG/M
3300027610|Ga0209528_1005175Not Available2769Open in IMG/M
3300027738|Ga0208989_10001961All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria6628Open in IMG/M
3300027855|Ga0209693_10438931All Organisms → cellular organisms → Bacteria628Open in IMG/M
3300027894|Ga0209068_10434261All Organisms → cellular organisms → Bacteria → Proteobacteria752Open in IMG/M
3300027895|Ga0209624_10709276Not Available664Open in IMG/M
3300028792|Ga0307504_10217854All Organisms → cellular organisms → Bacteria → Proteobacteria684Open in IMG/M
3300028906|Ga0308309_10893636All Organisms → cellular organisms → Bacteria → Proteobacteria771Open in IMG/M
3300029943|Ga0311340_11224729All Organisms → cellular organisms → Bacteria → Proteobacteria603Open in IMG/M
3300029951|Ga0311371_12204426All Organisms → cellular organisms → Bacteria → Proteobacteria574Open in IMG/M
3300030058|Ga0302179_10387089Not Available616Open in IMG/M
3300030687|Ga0302309_10567634Not Available535Open in IMG/M
3300030738|Ga0265462_10270409Not Available1027Open in IMG/M
3300030906|Ga0302314_11067182All Organisms → cellular organisms → Bacteria → Proteobacteria772Open in IMG/M
3300030937|Ga0138302_1163928All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria995Open in IMG/M
3300031561|Ga0318528_10520691All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300031616|Ga0307508_10716755All Organisms → cellular organisms → Bacteria → Proteobacteria611Open in IMG/M
3300031668|Ga0318542_10367611All Organisms → cellular organisms → Bacteria → Proteobacteria741Open in IMG/M
3300031708|Ga0310686_107594440All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300031708|Ga0310686_118841103Not Available710Open in IMG/M
3300031715|Ga0307476_10164308All Organisms → cellular organisms → Bacteria → Proteobacteria1600Open in IMG/M
3300031720|Ga0307469_10312585All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1300Open in IMG/M
3300031723|Ga0318493_10679682All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300031747|Ga0318502_10114838All Organisms → cellular organisms → Bacteria → Proteobacteria1507Open in IMG/M
3300031751|Ga0318494_10316189All Organisms → cellular organisms → Bacteria → Proteobacteria902Open in IMG/M
3300031753|Ga0307477_10946041Not Available567Open in IMG/M
3300031754|Ga0307475_11139357All Organisms → cellular organisms → Bacteria → Proteobacteria609Open in IMG/M
3300031770|Ga0318521_10643750Not Available642Open in IMG/M
3300031770|Ga0318521_11019184Not Available508Open in IMG/M
3300031793|Ga0318548_10201566All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales976Open in IMG/M
3300031796|Ga0318576_10066647All Organisms → cellular organisms → Bacteria1593Open in IMG/M
3300031796|Ga0318576_10089706All Organisms → cellular organisms → Bacteria → Proteobacteria1392Open in IMG/M
3300031819|Ga0318568_10178102All Organisms → cellular organisms → Bacteria → Proteobacteria1307Open in IMG/M
3300031819|Ga0318568_10188939All Organisms → cellular organisms → Bacteria → Proteobacteria1269Open in IMG/M
3300031823|Ga0307478_10192828All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1636Open in IMG/M
3300031823|Ga0307478_11501326All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium558Open in IMG/M
3300031831|Ga0318564_10329499All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300031833|Ga0310917_10408702All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales923Open in IMG/M
3300031833|Ga0310917_10908540All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300031845|Ga0318511_10038690All Organisms → cellular organisms → Bacteria1864Open in IMG/M
3300031859|Ga0318527_10300158Not Available684Open in IMG/M
3300031860|Ga0318495_10499871All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300031879|Ga0306919_10065950All Organisms → cellular organisms → Bacteria → Proteobacteria2450Open in IMG/M
3300031880|Ga0318544_10319042Not Available603Open in IMG/M
3300031880|Ga0318544_10345409All Organisms → cellular organisms → Bacteria578Open in IMG/M
3300031945|Ga0310913_10663459All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales738Open in IMG/M
3300032008|Ga0318562_10365814All Organisms → cellular organisms → Bacteria → Proteobacteria838Open in IMG/M
3300032009|Ga0318563_10540084All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300032042|Ga0318545_10279984All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300032068|Ga0318553_10020856All Organisms → cellular organisms → Bacteria → Proteobacteria3047Open in IMG/M
3300032089|Ga0318525_10022923All Organisms → cellular organisms → Bacteria → Proteobacteria2984Open in IMG/M
3300032090|Ga0318518_10313539Not Available805Open in IMG/M
3300032180|Ga0307471_101879449Not Available748Open in IMG/M
3300032205|Ga0307472_100197043All Organisms → cellular organisms → Bacteria → Proteobacteria1527Open in IMG/M
3300032770|Ga0335085_11549018All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300032782|Ga0335082_11357942All Organisms → cellular organisms → Bacteria → Proteobacteria580Open in IMG/M
3300032828|Ga0335080_10130657All Organisms → cellular organisms → Bacteria → Proteobacteria2786Open in IMG/M
3300032898|Ga0335072_10295359All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium1820Open in IMG/M
3300033158|Ga0335077_10368244All Organisms → cellular organisms → Bacteria → Proteobacteria1552Open in IMG/M
3300033290|Ga0318519_10161119All Organisms → cellular organisms → Bacteria → Proteobacteria1260Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil34.64%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.23%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.58%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.58%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.92%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.27%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil3.27%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.27%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.27%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.61%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.61%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil2.61%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.96%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.96%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog1.31%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.31%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.31%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.31%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.65%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.65%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.65%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.65%
EctomycorrhizaHost-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459010Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)EnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005180Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134EnvironmentalOpen in IMG/M
3300005181Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005576Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006354Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300011106Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMC (Metagenome Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012988Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MGEnvironmentalOpen in IMG/M
3300014168Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaGEnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017937Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017999Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MGEnvironmentalOpen in IMG/M
3300018044Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022721Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025913Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300026496Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-AEnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027562Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027894Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029951III_Palsa_N1 coassemblyEnvironmentalOpen in IMG/M
3300030058Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1EnvironmentalOpen in IMG/M
3300030687Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1EnvironmentalOpen in IMG/M
3300030738Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assemblyEnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300030937Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031616Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EMHost-AssociatedOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031723Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23EnvironmentalOpen in IMG/M
3300031747Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031769Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24EnvironmentalOpen in IMG/M
3300031770Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031831Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031845Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031880Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300032008Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032068Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032090Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300032898Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
F62_085487802170459010Grass SoilHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
JGI12053J15887_1002048813300001661Forest SoilRTAYRRLHAAPVKNLSALRDAAQRLEQLDRGRAALRSDLKALSP*
JGI25388J43891_106349933300002909Grasslands SoilRITRLWLAAHHAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD*
JGI25389J43894_107013433300002916Grasslands SoilLAAHNAYRRLHAAPVTNLTALRDAARRLEQLERGRAALRSDLKALAD*
Ga0066688_1044055933300005178SoilYRRLHRAPVTNLIALRDAAQRLDRLDRGRAALLRDLKALSD*
Ga0066685_1025418033300005180SoilRLHDAPVPDLPALRDAARRLDRLERGRAALMSDLKALSD*
Ga0066678_1036238333300005181SoilRWRTAANTCRRLHDAQVPDLPALRDAARRLDRLERGRAALMSDMKALSD*
Ga0066675_1058357223300005187SoilTRLWLAAHHAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD*
Ga0070699_10107859013300005518Corn, Switchgrass And Miscanthus RhizosphereRKAYRRLHAAPVQDLDELRSAAQRLDALDRDRATLLSDLKALSR*
Ga0070741_1037769513300005529Surface SoilNTYRRLHDAPVKNIIALRNAAARLDQLDRGRAALMRDLKALSD*
Ga0070741_1127987313300005529Surface SoilTRQWLVARTTWRRLHEAPVKNITALRDAARRLDQLERGRAALLRDLKALAD*
Ga0070735_1066783113300005534Surface SoilYRRLHEAPVKNITALRDAARRLDQLERGRAALLRDLKALAD*
Ga0070730_1045280533300005537Surface SoilVRVNRLWVTARNTYQRLHQAPVQDLQALRQAAQRLARLDRGRALLRRDLKALSD*
Ga0070686_10003434013300005544Switchgrass RhizosphereTRQWLAARNTYRRLHDAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0066708_1103156013300005576SoilAAHHAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD*
Ga0070763_1069251423300005610SoilLAARNAYRRLHDQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD*
Ga0068859_10014650533300005617Switchgrass RhizosphereLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0070764_1105906413300005712SoilYASTTRQWLAARNAYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD*
Ga0066903_10904510613300005764Tropical Forest SoilARYARLTRQWVTARNAYRRLYGAPVQNLIELRDAAQRLSRLDRGRAALLSDLKSLSD*
Ga0075021_1040564513300006354WatershedsWLAARTAYRRLHVAPVKNLSALRNAAQRLEQLDRGRAALRSDLKALSD*
Ga0066659_1084281113300006797SoilAARYARVTRRWRTAHNACRRLHDAPVPDLPALRDAARRLDRLERGRAALMSDLKALSD*
Ga0099793_1019418333300007258Vadose Zone SoilDVAARYSSMTRLLLAAHNAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD
Ga0105240_1120244623300009093Corn RhizosphereQWLAARNTYRRLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0105240_1238633813300009093Corn RhizosphereAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0105245_1317907813300009098Miscanthus RhizosphereRNTYRRLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0105237_1215605223300009545Corn RhizosphereWLAARNTYRRLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0126373_1329649723300010048Tropical Forest SoilHAAPVQDLSELRRAAERLDQLDRGRAALRRDLKALSD*
Ga0134082_1008845223300010303Grasslands SoilLAAHHAYRRLHASPVKNLTALRDAARRLEQLDRGRAALRSDLKALAD*
Ga0134084_1045187313300010322Grasslands SoilPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD*
Ga0134125_1244823723300010371Terrestrial SoilRYASTTRQWLAARNAYRRLNEQPVKNIIALRDAAQRLDQLDRGRAALLRDLKALSD*
Ga0134128_1210761123300010373Terrestrial SoilQWLAARNAYRRLHEQPVKNFMALREAAQRLDQLDRGRAALMRDLKALSD*
Ga0134128_1284838323300010373Terrestrial SoilLHEAPVKNITALHDAASRLDRLERGRAALLRDLKALAD*
Ga0126381_10342948613300010376Tropical Forest SoilPVQNLTELRAAAERLEQLDRGRAALRRDLKALSD*
Ga0134126_1060996133300010396Terrestrial SoilRRLHEAPVKNITALRDAARRLDQLERGRAALLRDLKALAD*
Ga0151489_145666913300011106SoilERINRLWLSARTAYRRLNDAPVQNLRALRGAAQRLDQLAAGRAALMRDLKALSD*
Ga0137360_1186872323300012361Vadose Zone SoilMTRLWLAAHNAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD*
Ga0137361_1021695113300012362Vadose Zone SoilNAYRRLHAAPVKNFSALRDAAQRLDQLDRGRAALLSDLKALSD*
Ga0137396_1004288813300012918Vadose Zone SoilLHAAPVKNLSALRDAAQRLEQLDRGRAALRSDLKALSD*
Ga0137413_1003140463300012924Vadose Zone SoilARYASTTRQWLAARNAYRRLHEQPVKNIIALRDAALRLDQLDRGRAALMRDIKALSD*
Ga0137404_1031398433300012929Vadose Zone SoilWQAARNAYRRLHKAPVTNLIALRDAAERLDRLDRGRAALLRDLKALSD*
Ga0164300_1033476433300012951SoilLSARTAYRRLNDAPVQNLRALRGAAQRLDQLTAGRAALMRDLKALSD*
Ga0164306_1122091313300012988SoilKAYRRLHAAPVQDLDELRSAAQRLDALDRDRATLLSDLKALSR*
Ga0181534_1020894313300014168BogRLNEAPVQNLGALRSAAARLDELARGRAALLRDLKALAD*
Ga0163163_1169371823300014325Switchgrass RhizosphereRQWLAARNAYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALLRDLKALSD*
Ga0181519_1052804223300014658BogAARNAYRRLHEQPVKNIIALREAAQRLDQLDRGRAALMRDLKALSD*
Ga0157379_1052597113300014968Switchgrass RhizospherePVKNIIALRDAAQRLDQLDRGRAALLRDLKALSD*
Ga0157376_1158740223300014969Miscanthus RhizosphereRQWLAARNTYRRLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD*
Ga0137412_1071043533300015242Vadose Zone SoilTTRQWLAARNAYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALMRDIKALSD*
Ga0182036_1054204813300016270SoilRIQRLWVAARNAYRRAHQAPVQNLNELRAAAERLEQLDRGRAALRRDLKALSD
Ga0182034_1196518033300016371SoilARNAYRRAHRAPVQDLAELRAAAERLEQLDRGRAALRRDLKALSD
Ga0182040_1023524213300016387SoilARIQRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELGRGRAALRRDLKALSD
Ga0187820_103259713300017924Freshwater SedimentYRRLHEAPVQNLTALRDAAQRLDQLDRGRAALLRDLKALAD
Ga0187824_1025131513300017927Freshwater SedimentRLWHAARKAYYRLHKAQVQDLTELRSAAQRLDELDRDRATLLSDLKALSR
Ga0187809_1012371233300017937Freshwater SedimentRNAYRRAHQAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD
Ga0187778_1004689313300017961Tropical PeatlandVTARNSYRRLHEAPVKNLSALRAAAQRLDELARGRAALRRDLKALSD
Ga0187783_1086128623300017970Tropical PeatlandLWVSARNLYRRLHSAPVQDLTALRAAAERLDQLDRDRAALRRDLKALAD
Ga0187781_1034272023300017972Tropical PeatlandARNSYRRLHEAPVKNLSALRAAAQRLDELARGRAALRRDLKALSD
Ga0187767_1015633333300017999Tropical PeatlandLWVTARNAYRRLHEAPVQNLSALRAAAQRLARLDRGRAALRRDLKALSD
Ga0187890_1056591313300018044PeatlandSTTRQWLAARNAYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD
Ga0187765_1030295233300018060Tropical PeatlandRKTYRRLHAQPVQNLTELRTAAQRLDELDRDRATLLSDLKALSR
Ga0187784_1097152213300018062Tropical PeatlandAAPVQDLAALRAAAQRLDRLDRGRAALRRDLKALAD
Ga0187772_1019035913300018085Tropical PeatlandNAYRRLHAAPVQNLAALRAAAERLDQLDRGRSALRRDLKALSD
Ga0182025_127729533300019786PermafrostNAYRRLNEAPVQNLTAMRAAAQRLDQLTRGRAALLSDLKALSD
Ga0210403_1111372623300020580SoilWLAARNTYRRLHDAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
Ga0210395_1052905813300020582SoilRRLNEAPVQNLMAMRAAAQRLDQLAQGRASLLSDLKALSD
Ga0210401_1071060313300020583SoilTAARYERVNRLWLMACTAYRRLNEAPVQNLRALRDAAARLDQLSRGRAALRRDLKALAD
Ga0210400_1148099313300021170SoilHQAPVQNLAALRAAAQRLDQLDRGRAALRRDLKALAD
Ga0210405_1048870933300021171SoilAPVQNLSALRDAAQRLDQLARGRAALLRDLKALSD
Ga0210405_1052639033300021171SoilDRLWLTARNAYRRLHDAPVQDLLALRNAAQRLDQLDRGRAALRSDLKALAY
Ga0210408_1000991613300021178SoilRMNRLWLAARAAYRRLHAAPVKNFSALRDAAQRLERLDRGRAALRSDLKALSD
Ga0210408_1013813613300021178SoilRTAYRRLHAAPVKNLSALRDAAQRLEQLDRERAALRSDLKALSD
Ga0210396_1173033513300021180SoilTARNAYRRLNEAQVQDLNALRSAAQRLDQLDRGRAALLSDLKALAD
Ga0210388_1020800233300021181SoilRYASTTRQWLAARNAYRRLHEQPVKNIIALRDAALRLDQLDRGRAALMRDLKALAD
Ga0210389_1111613023300021404SoilSHVKDLFALRDAAQRLDQVERGRNALLRDLKALSD
Ga0210387_1129979023300021405SoilRLHESHVKDLFALRDAAQRLDQVERGRNALLRDLKALAD
Ga0210394_1037518513300021420SoilSHVKDLFALRDAAHRLDQVERGRNALLRDLKALSD
Ga0210394_1101916533300021420SoilRLHEAPVQNLSALRDAAQRLDHLDRGRAALLRDMKALAD
Ga0210391_1045583613300021433SoilLHEQPVKNIIALRDAALRLDQLDRGRAALMRDLKALAD
Ga0210398_1082844313300021477SoilAARNAYRRLHEQPVKNIIALRDAALRLDQLDRGRAALMRDLKALAD
Ga0210398_1121137813300021477SoilYRRLHDSHVKDLFALRDAAHRLDQVERGRNALLRDLKALSD
Ga0210409_10016343103300021559SoilWLTARNAYRRLHEAPVQDLLALRNAAQRLDQLDRGRAALRSDLKALAY
Ga0126371_1257889033300021560Tropical Forest SoilRNAYRRAHAAPVQDLSELRRAAERLDQLDRGRAALRRDLKALSD
Ga0242666_111463213300022721SoilRIYRLWVTARNAYRRLHAAPVQNLPALRAAAARLDQLDRGRAALRRDLKALSD
Ga0137417_101762333300024330Vadose Zone SoilTTRLWLAARNAYRRLHAAPVKNLSALRGAAQRLEQLDRGRAALRSDLKALSD
Ga0207654_1102004523300025911Corn RhizosphereLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
Ga0207707_1048584723300025912Corn RhizosphereRRLHEQPVKNIIALRDAAQRLDQLDRGRAALLRDLKALSD
Ga0207695_1034508913300025913Corn RhizosphereYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALLRDLKALAD
Ga0209801_137660423300026326SoilHHAYRRLHAAPVKNLTALRDAAQRLEQLDRGRAALRSDLKALAD
Ga0257162_101746413300026340SoilMTRLWLAARNAYRRLHAAPVKNFSALRDAAQRLDQLDRGRAALLSDLKALSD
Ga0257157_102533013300026496SoilRRLHAAPVKNFSALRDAAQRLDQLDRGRAALLSDLKALSD
Ga0208993_100760913300027480Forest SoilLAARNAYRRLHAAPVKNLSALRDAAQRLDQLDRGRAALLSDLKALSP
Ga0209735_109905113300027562Forest SoilYRRLHAAPVKNFSALRDAAQRLDQLDRGRAALLSDLKALSD
Ga0209528_100517543300027610Forest SoilLAARNTYRRLHDAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
Ga0208989_1000196193300027738Forest SoilPRLWLAARTAYRRLHAAPVKNLSALRDAAQRLEQLDRGRAALRSDLKALSP
Ga0209693_1043893113300027855SoilTRQWLAARNAYRRLHDQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD
Ga0209068_1043426113300027894WatershedsWLAARTAYRRLHVAPVKNLSALRNAAQRLEQLDRGRAALRSDLKALSD
Ga0209624_1070927613300027895Forest SoilATRQWLAARAAYRRLHESHVKDLFALRDAAHRLDQVERGRNALLRDLKALAD
Ga0307504_1021785433300028792SoilAAPVKNFSALRHAAQRLDQLDRGRAALLSDLKALSD
Ga0308309_1089363633300028906SoilTARTTYRRLNEAPVQNLPALRSAAARLDQLTRGREALLRDLKALAD
Ga0311340_1122472923300029943PalsaQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD
Ga0311371_1220442613300029951PalsaYRRLHDQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD
Ga0302179_1038708933300030058PalsaYRRLNEAPVQNLSALRSAAARLDQLARGRAALLRDLKALAD
Ga0302309_1056763413300030687PalsaEAPVQNLSALRSAAARLDQLARGRAALLRDLKALAD
Ga0265462_1027040913300030738SoilRLWHTARNAYRRLNEAPVQNLMEMRAAAQRLDQLARGRASLLSDLKALSD
Ga0302314_1106718223300030906PalsaYRRLHEQPVKNIIALRDAAQRLDQLDRGRAALMRDLKALAD
Ga0138302_116392833300030937SoilYDSHVKDLFALRDAAQRLDQVERGRNALLRDLKALSD
Ga0318528_1052069133300031561SoilHRLWVAARNAYRRAHQAPVQDLTQLRQAAERLEQLDRGRAALRRDLKALSD
Ga0307508_1071675523300031616EctomycorrhizaQWLAARNTYRRLHDAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
Ga0318542_1036761133300031668SoilAYRRAHQAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD
Ga0310686_10759444033300031708SoilAYRRLNEAPVQNLMAMRAAAQRLDQLARGRAALLSDLKALSD
Ga0310686_11884110313300031708SoilYRRLHDSHVKDLFALRDAAQRLDQVERGRNALLRDLKALAD
Ga0307476_1016430843300031715Hardwood Forest SoilATYRRLHESHVKDLFALRDAAQRLDQVERGRNALLRDLKALSD
Ga0307469_1031258513300031720Hardwood Forest SoilHAARKAYRRLHTAPVQDLDELRSAAQRLDELDRDRTTLLSDLKALSR
Ga0318493_1067968223300031723SoilRVQRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELDRGRAALRRDLKALSD
Ga0318502_1011483813300031747SoilRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELGRGRAALRRDLKALSD
Ga0318494_1031618923300031751SoilRIQRLWVAARNAYRRAYRAPVQDLSELRAAAERLEQLDRGRAALRRELKALSD
Ga0307477_1094604133300031753Hardwood Forest SoilLHAAPVQNLPALRAAAARLDQLDRGRAALRRDLKALSD
Ga0307475_1113935713300031754Hardwood Forest SoilLTARSAYRRLHDAPVQDLGALRSAAQRLDQLDRGREALLRDLKALAD
Ga0318526_1016553833300031769SoilLWVAARNAYRRAHQAPVQDLEQLRQAAERLDQLERGRAALRRDLKALSD
Ga0318521_1064375013300031770SoilARNAYRRAHRAPVQNLTELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318521_1101918433300031770SoilLAERHARLTRLWLAARNAYRRLNEAPVQNLNALRQAAQRLDELSRGRAALMSDLKALSD
Ga0318548_1020156613300031793SoilIQRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELDRGRAALRRDLKALSD
Ga0318576_1006664743300031796SoilLAARYARIQRLWVAARNAYRRAHEAPIQDLAELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318576_1008970633300031796SoilAARYVRIQRLWVAARNAYRRAHQAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD
Ga0318568_1017810213300031819SoilQRLWVAARNAYRRAHEAPIQDLAELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318568_1018893923300031819SoilRAHQAPVQDLTQLRQAAERLEQLDRGRAALRRDLKALSD
Ga0318567_1089453313300031821SoilAYRRAYRAPVQDLSELRAAAERLEQLDRGRAALRRELKALSD
Ga0307478_1019282843300031823Hardwood Forest SoilRNVYRRLHQAPVQNLAALREAAQRLDQLDRGRAALRRDLKALAD
Ga0307478_1150132613300031823Hardwood Forest SoilRRWLTARNACRRLHDAPVADLMALRDAARRLDRLERGRAALMSDLKALSD
Ga0318564_1032949913300031831SoilAPVQNLNELRAAAERLEQLDRGRAALRRDLKALSD
Ga0310917_1040870213300031833SoilARNAYRRAHQAPVQDLTQLRQAAERLDELDRGRAALRRDLKALSD
Ga0310917_1090854033300031833SoilRIQRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELGRGRAALRRDLKALSD
Ga0318511_1003869033300031845SoilARIQRLWVAARNAYRRAHQAPVQDLTQLRQAAERLEQLDRGRAALRRDLKALSD
Ga0318527_1030015813300031859SoilVAARNAYRRAHQAPVQDLTELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318495_1049987113300031860SoilAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD
Ga0306919_1006595013300031879SoilNAYRRAHEAPIQDLAELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318544_1031904223300031880SoilRLWVAARNAYRRAHQAPVQNLNELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318544_1034540933300031880SoilRLWVAARNAYRRAHQAPVQDLTQLRQAAERLDELDRGRAALRRDLKALSD
Ga0310913_1066345933300031945SoilNAYRRAHQAPVQDLTQLRQAAERLDELDRGRAALRRDLKALSD
Ga0318562_1036581433300032008SoilLWVAARNAYRRAHQAPVQDLSELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318563_1054008413300032009SoilRLWVAARNAYRRAYRAPVQDLSELRAAAERLEQLDRGRAALRRELKALSD
Ga0318545_1027998413300032042SoilWVAARNAYRRAYRAPVQDLSELRAAAERLEQLDRGRAALRRELKALSD
Ga0318553_1002085643300032068SoilAYRRAHEAPIQDLAELRAAAERLEQLDRGRAALRRDLKALSD
Ga0318525_1002292343300032089SoilQRLWVAARNAYRRAHQAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD
Ga0318518_1031353933300032090SoilQRLWVAARNAYRRAHQAPVQNLNELRAAAERLEQLDRGRAALRRDLKALSD
Ga0307471_10187944923300032180Hardwood Forest SoilIDRLWLTARNAYRRLHEAPVQDLLALRNAAQRLDQLDRGRAALRSDLKALAY
Ga0307472_10019704313300032205Hardwood Forest SoilAPVQNLPALRDAAQRLNQLDRGRAALLSDLKSLSD
Ga0335085_1154901833300032770SoilHEAPIHDFIALRDAALRLDQLDRGRAALLRDLKALAD
Ga0335082_1135794223300032782SoilYRRLHEAPVKNIIALRDAAQRLDQLDRGRASLMRDLKALSD
Ga0335080_1013065733300032828SoilTAYRRLNQAPVQNLNALREAAARLDQLARGREALMRDLKALAD
Ga0335072_1029535913300032898SoilRLHEAPVKNITALRDAARRLDQLERGRAALLRDLKALAD
Ga0335077_1036824443300033158SoilYRRLHEAPVQNLSALRAAAQRLARLDRGRAALRRDLKALSD
Ga0318519_1016111913300033290SoilARYVRIQRLWVAARNAYRRAHQAPVQDLEELRQAAKRLDELDRGRAALRRDLKALSD


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