Metagenome Family F044808

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044808
Family Type	Metagenome
Number of Sequences	154
Average Sequence Length	44 residues
Representative Sequence	MPSYDRALWALRTWLDSWPGIGHVAVGMHRQGYDLQLTQYDE
Number of Associated Samples	106
Number of Associated Scaffolds	154

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	38.51 %
% of genes near scaffold ends (potentially truncated)	74.03 %
% of genes from short scaffolds (< 2000 bps)	87.01 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (92.208 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (24.026 % of family members)
Environment Ontology (ENVO)	Unclassified (34.416 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (59.740 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.43% β-sheet: 0.00% Coil/Unstructured: 48.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 154 Family Scaffolds
PF04392	ABC_sub_bind	40.91
PF00383	dCMP_cyt_deam_1	2.60
PF02371	Transposase_20	1.95
PF00583	Acetyltransf_1	1.30
PF00589	Phage_integrase	1.30
PF01914	MarC	1.30
PF01068	DNA_ligase_A_M	1.30
PF13419	HAD_2	1.30
PF14337	Abi_alpha	0.65
PF03200	Glyco_hydro_63	0.65
PF13673	Acetyltransf_10	0.65
PF01654	Cyt_bd_oxida_I	0.65
PF10282	Lactonase	0.65
PF09594	GT87	0.65
PF09851	SHOCT	0.65
PF01548	DEDD_Tnp_IS110	0.65
PF13676	TIR_2	0.65
PF01244	Peptidase_M19	0.65
PF07040	DUF1326	0.65
PF05494	MlaC	0.65
PF00239	Resolvase	0.65
PF02563	Poly_export	0.65
PF07076	DUF1344	0.65
PF12746	GNAT_acetyltran	0.65
PF06537	DHOR	0.65
PF02727	Cu_amine_oxidN2	0.65
PF08483	Obsolete Pfam Family	0.65
PF13180	PDZ_2	0.65
PF01575	MaoC_dehydratas	0.65
PF01738	DLH	0.65
PF03576	Peptidase_S58	0.65
PF13379	NMT1_2	0.65
PF13432	TPR_16	0.65

COG ID	Name	Functional Category	% Frequency in 154 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	40.91
COG3547	Transposase	Mobilome: prophages, transposons [X]	2.60
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.30
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.30
COG2095	Small neutral amino acid transporter SnatA, MarC family	Amino acid transport and metabolism [E]	1.30
COG3191	L-aminopeptidase/D-esterase	Amino acid transport and metabolism [E]	1.30
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.65
COG1596	Periplasmic protein Wza involved in polysaccharide export, contains SLBB domain of the beta-grasp fold	Cell wall/membrane/envelope biogenesis [M]	0.65
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.65
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.65
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.65
COG2854	Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter Mla	Cell wall/membrane/envelope biogenesis [M]	0.65
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.65
COG3733	Cu2+-containing amine oxidase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.65
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	92.21 %
Unclassified	root	N/A	7.79 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	92.21 %
Unclassified	root	N/A	7.79 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	92.21 %
Unclassified	root	N/A	7.79 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	17.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.44 %
Unclassified	root	N/A	7.79 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.30 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.30 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	17.53 %
Unclassified	root	N/A	7.79 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5.19 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.30 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.30 %
unclassified Terrabacteria group	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group	0.65 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.65 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	17.53 %
Unclassified	root	N/A	7.79 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.30 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.65 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.65 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.65 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.65 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	16.23 %
Unclassified	root	N/A	7.79 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.30 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.65 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.65 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.65 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.65 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.23 %
Unclassified	root	N/A	7.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.60 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.30 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.65 %
Methylomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas	0.65 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.65 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.65 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.23 %
Unclassified	root	N/A	7.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.30 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.65 %
unclassified Methylomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas	0.65 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.65 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.65 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.65 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	16.23 %
Unclassified	root	N/A	7.79 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.30 %
Methylomonas sp. LWB	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LWB	0.65 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.65 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.65 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.65 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.65 %
Terrabacteria group bacterium ANGP1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0723655	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300000443\|F12B_10153236	All Organisms → cellular organisms → Bacteria	1922	Open in IMG/M
3300000787\|JGI11643J11755_11663807	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300000955\|JGI1027J12803_100118802	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300000956\|JGI10216J12902_110847921	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300001431\|F14TB_100083495	All Organisms → cellular organisms → Bacteria	1998	Open in IMG/M
3300001431\|F14TB_102258733	All Organisms → cellular organisms → Bacteria	1000	Open in IMG/M
3300002558\|JGI25385J37094_10179311	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300002908\|JGI25382J43887_10097919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1554	Open in IMG/M
3300002912\|JGI25386J43895_10156108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	570	Open in IMG/M
3300004633\|Ga0066395_10053841	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300005167\|Ga0066672_10124017	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300005174\|Ga0066680_10759029	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300005178\|Ga0066688_10892584	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300005180\|Ga0066685_10887505	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300005332\|Ga0066388_102962254	Not Available	868	Open in IMG/M
3300005332\|Ga0066388_104430666	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300005445\|Ga0070708_100716323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	941	Open in IMG/M
3300005447\|Ga0066689_10988487	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300005451\|Ga0066681_10742977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	595	Open in IMG/M
3300005468\|Ga0070707_100439872	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300005468\|Ga0070707_100451156	All Organisms → cellular organisms → Bacteria	1247	Open in IMG/M
3300005468\|Ga0070707_100525845	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1145	Open in IMG/M
3300005526\|Ga0073909_10320781	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005540\|Ga0066697_10676007	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300005558\|Ga0066698_11024829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	524	Open in IMG/M
3300005561\|Ga0066699_10267869	All Organisms → cellular organisms → Bacteria	1210	Open in IMG/M
3300005713\|Ga0066905_100134342	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300005764\|Ga0066903_100228627	All Organisms → cellular organisms → Bacteria	2833	Open in IMG/M
3300005764\|Ga0066903_100881113	All Organisms → cellular organisms → Bacteria	1616	Open in IMG/M
3300005764\|Ga0066903_101331749	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300005764\|Ga0066903_103463107	All Organisms → cellular organisms → Bacteria	851	Open in IMG/M
3300005764\|Ga0066903_108321871	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	530	Open in IMG/M
3300006058\|Ga0075432_10367004	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300006796\|Ga0066665_10183723	Not Available	1611	Open in IMG/M
3300006796\|Ga0066665_11561491	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006797\|Ga0066659_11165454	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300006844\|Ga0075428_100675968	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1100	Open in IMG/M
3300006844\|Ga0075428_102245656	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300006852\|Ga0075433_11403517	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300006854\|Ga0075425_100831458	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1057	Open in IMG/M
3300006854\|Ga0075425_101920561	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300006854\|Ga0075425_102665026	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006904\|Ga0075424_101781005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → unclassified Terrabacteria group → Terrabacteria group bacterium ANGP1	651	Open in IMG/M
3300007076\|Ga0075435_100402413	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1177	Open in IMG/M
3300007076\|Ga0075435_100404955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1174	Open in IMG/M
3300009012\|Ga0066710_100311422	All Organisms → cellular organisms → Bacteria	2311	Open in IMG/M
3300009100\|Ga0075418_10099194	All Organisms → cellular organisms → Bacteria	3094	Open in IMG/M
3300009100\|Ga0075418_11571259	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300009137\|Ga0066709_100468659	All Organisms → cellular organisms → Bacteria	1766	Open in IMG/M
3300009147\|Ga0114129_11226120	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300009147\|Ga0114129_11490564	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	832	Open in IMG/M
3300009156\|Ga0111538_12356199	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	668	Open in IMG/M
3300009162\|Ga0075423_11191204	All Organisms → cellular organisms → Bacteria	813	Open in IMG/M
3300010043\|Ga0126380_10271317	All Organisms → cellular organisms → Bacteria	1188	Open in IMG/M
3300010043\|Ga0126380_10392693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylomonas → unclassified Methylomonas → Methylomonas sp. LWB	1027	Open in IMG/M
3300010043\|Ga0126380_11531262	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300010043\|Ga0126380_11558629	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300010046\|Ga0126384_11889233	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300010046\|Ga0126384_12316942	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300010047\|Ga0126382_10819220	Not Available	796	Open in IMG/M
3300010048\|Ga0126373_11400171	All Organisms → cellular organisms → Bacteria	765	Open in IMG/M
3300010336\|Ga0134071_10150891	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1130	Open in IMG/M
3300010359\|Ga0126376_10292812	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300010360\|Ga0126372_10065285	All Organisms → cellular organisms → Bacteria	2556	Open in IMG/M
3300010360\|Ga0126372_10259914	All Organisms → cellular organisms → Bacteria	1496	Open in IMG/M
3300010360\|Ga0126372_10384688	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1274	Open in IMG/M
3300010360\|Ga0126372_10882833	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300010360\|Ga0126372_11945607	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300010361\|Ga0126378_11478075	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	770	Open in IMG/M
3300010362\|Ga0126377_10246753	All Organisms → cellular organisms → Bacteria	1736	Open in IMG/M
3300010362\|Ga0126377_10423247	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300010362\|Ga0126377_10463270	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1292	Open in IMG/M
3300010362\|Ga0126377_10542496	All Organisms → cellular organisms → Bacteria	1200	Open in IMG/M
3300010362\|Ga0126377_11084164	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300010362\|Ga0126377_11877138	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300010366\|Ga0126379_11774181	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300010366\|Ga0126379_13741761	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300010376\|Ga0126381_102847007	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010398\|Ga0126383_10332430	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300010398\|Ga0126383_10779520	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300010398\|Ga0126383_11117335	Not Available	878	Open in IMG/M
3300010398\|Ga0126383_11488384	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	767	Open in IMG/M
3300010868\|Ga0124844_1131867	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300012199\|Ga0137383_11222641	All Organisms → cellular organisms → Bacteria	539	Open in IMG/M
3300012210\|Ga0137378_10030542	All Organisms → cellular organisms → Bacteria	4774	Open in IMG/M
3300012210\|Ga0137378_10804923	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	852	Open in IMG/M
3300012211\|Ga0137377_10233177	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1768	Open in IMG/M
3300012211\|Ga0137377_11305004	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300012351\|Ga0137386_10274273	All Organisms → cellular organisms → Bacteria → Proteobacteria	1213	Open in IMG/M
3300012357\|Ga0137384_11056272	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300012948\|Ga0126375_10466670	All Organisms → cellular organisms → Bacteria	932	Open in IMG/M
3300012948\|Ga0126375_11092322	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300012948\|Ga0126375_11397637	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300012971\|Ga0126369_10164179	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2104	Open in IMG/M
3300012971\|Ga0126369_10614988	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1158	Open in IMG/M
3300013306\|Ga0163162_10648250	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1180	Open in IMG/M
3300015371\|Ga0132258_10383119	All Organisms → cellular organisms → Bacteria	3488	Open in IMG/M
3300015371\|Ga0132258_10770274	All Organisms → cellular organisms → Bacteria	2425	Open in IMG/M
3300015371\|Ga0132258_12610303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1262	Open in IMG/M
3300015372\|Ga0132256_100492795	All Organisms → cellular organisms → Bacteria	1335	Open in IMG/M
3300015373\|Ga0132257_100564681	All Organisms → cellular organisms → Bacteria	1403	Open in IMG/M
3300015373\|Ga0132257_102274389	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	702	Open in IMG/M
3300016319\|Ga0182033_10242860	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300016319\|Ga0182033_11766390	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300016387\|Ga0182040_10944685	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300018082\|Ga0184639_10107053	All Organisms → cellular organisms → Bacteria	1478	Open in IMG/M
3300021560\|Ga0126371_10600508	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300021560\|Ga0126371_11105249	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	932	Open in IMG/M
3300025922\|Ga0207646_10198475	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300025938\|Ga0207704_10541530	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300026297\|Ga0209237_1060643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1836	Open in IMG/M
3300026301\|Ga0209238_1157156	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300026313\|Ga0209761_1089974	All Organisms → cellular organisms → Bacteria	1563	Open in IMG/M
3300026317\|Ga0209154_1068173	All Organisms → cellular organisms → Bacteria	1551	Open in IMG/M
3300026328\|Ga0209802_1008743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6129	Open in IMG/M
3300026332\|Ga0209803_1036361	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2278	Open in IMG/M
3300026333\|Ga0209158_1199272	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300026532\|Ga0209160_1176134	All Organisms → cellular organisms → Bacteria	906	Open in IMG/M
3300027561\|Ga0209887_1035516	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1123	Open in IMG/M
3300027874\|Ga0209465_10430108	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027880\|Ga0209481_10384777	All Organisms → cellular organisms → Bacteria → Proteobacteria	718	Open in IMG/M
3300027909\|Ga0209382_10193601	All Organisms → cellular organisms → Bacteria	2334	Open in IMG/M
3300027909\|Ga0209382_11393731	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300028878\|Ga0307278_10017480	All Organisms → cellular organisms → Bacteria	3325	Open in IMG/M
3300031226\|Ga0307497_10027468	All Organisms → cellular organisms → Bacteria	1825	Open in IMG/M
3300031543\|Ga0318516_10510958	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031544\|Ga0318534_10773388	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300031545\|Ga0318541_10802395	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300031562\|Ga0310886_10830686	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	583	Open in IMG/M
3300031680\|Ga0318574_10578383	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300031720\|Ga0307469_10146134	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1761	Open in IMG/M
3300031751\|Ga0318494_10303469	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300031764\|Ga0318535_10498369	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300031770\|Ga0318521_10949175	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300031795\|Ga0318557_10377296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	652	Open in IMG/M
3300031796\|Ga0318576_10113717	Not Available	1244	Open in IMG/M
3300031820\|Ga0307473_10622719	Not Available	748	Open in IMG/M
3300031896\|Ga0318551_10596449	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300031910\|Ga0306923_10127131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2898	Open in IMG/M
3300031912\|Ga0306921_10228105	All Organisms → cellular organisms → Bacteria	2182	Open in IMG/M
3300031941\|Ga0310912_10211518	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1485	Open in IMG/M
3300031954\|Ga0306926_11282002	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	856	Open in IMG/M
3300032054\|Ga0318570_10423082	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300032059\|Ga0318533_10490266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	901	Open in IMG/M
3300032180\|Ga0307471_100998104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1004	Open in IMG/M
3300032180\|Ga0307471_101320317	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300032261\|Ga0306920_103487541	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.82%
Host-Associated	Host-Associated	18.18%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.17%
Plants	Host-Associated → Plants	18.18%
Aquatic	Environmental → Aquatic	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.64%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.55%
Sediment	Environmental → Aquatic → Sediment	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.53%
Loam	Environmental → Terrestrial → Soil → Loam	12.99%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.65%
Sand	Environmental → Terrestrial → Soil → Sand	0.65%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.82%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	18.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.99%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.14%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.25%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	2.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.30%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.65%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	13.64%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.99%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.44%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.14%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	5.19%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.55%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.25%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.25%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	2.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.30%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.30%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.65%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000443	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.2B clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300002558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm	Environmental	Open in IMG/M
3300002908	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_40cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005174	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005451	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005540	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026297	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026301	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cm (SPAdes)	Environmental	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026317	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026332	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026532	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)	Environmental	Open in IMG/M
3300027561	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_07236551	2228664022	Soil	MPPCYRDLWALRIWLDSWSGIGHLAVWMHRQGFDLQ
F12B_101532361	3300000443	Soil	MPAYDRALHALRTWLDSWSGIGHVVVGMAHQGFDLQLIRYDERGWR
F14TC_1004014161	3300000559	Soil	VFHALLRPRAPRGALRSWLDTWPGIGHVAVGLHRQGYDLQLTQYDER
JGI11643J11755_116638071	3300000787	Soil	MPSYDRALHALRTWLDSWAGIGHVAVGMHCQGYDLQLTQYGERGW
JGI1027J12803_1001188021	3300000955	Soil	MPSHDRALSALRTLLDSWIGVGHVAIGMHRQGFDLQLTQYDERGW
JGI10216J12902_1108479213	3300000956	Soil	MPSYDRALWALRTWLDSWSGIGHVTVGMTRQGYASS*
F14TB_1000834951	3300001431	Soil	MPAYDRALHALRTWLDSWSGIGHVVVGMAHQGFDL
F14TB_1022587332	3300001431	Soil	MPPYDRALWALRTWLDSWFGIAHVAVDMHRQGFDLQLTQYDER
JGI25385J37094_101793111	3300002558	Grasslands Soil	MLSYDRALHALRTWLDCWSGIGHVAVGMARQGYDLQLTRYDD
JGI25382J43887_100979193	3300002908	Grasslands Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDERG
JGI25386J43895_101561081	3300002912	Grasslands Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDERGGDDFRYAG
Ga0066395_100538412	3300004633	Tropical Forest Soil	MPSYDRALWALRKWLDSWPGIGHIAVGMHRQGFDLQLTQYDDSGWRASEQV*
Ga0066672_101240173	3300005167	Soil	MVGCAGCSMPSYDRALHALRSWSDSWSGIGHVAVGMARQGCDLQLTRYDEK
Ga0066680_107590291	3300005174	Soil	MPSYDRARHALRSWLDSLVWDGHVTVGMARQDYDLQLTRYDEKGWRATF*
Ga0066688_108925842	3300005178	Soil	MTDQRGRLLVAALGFAGCSMPSYDRALHALGTVGMARQGYDLQLTRYDEKGW
Ga0066685_108875052	3300005180	Soil	SMPSYDRALHALRTWLDSWSGIGHVTVGMARRGYDLQLTRYDEKG*
Ga0066388_1029622542	3300005332	Tropical Forest Soil	MPSYNRALWTLRPPSSASWPGIDPVAVGMHRQGYDLQLTQYDD
Ga0066388_1044306663	3300005332	Tropical Forest Soil	MPSYDPALRLLRSWLDTWPGIGRVAVGMHRQGLNLQLTQYDQRGWGSMTGAVKR*
Ga0070708_1007163232	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDERGGDDFRYAGRSVSRFTAIVQ*
Ga0066689_109884871	3300005447	Soil	MPSYDRALHALRSWSDSWSGIGHVAVGMARQGCDLQLTRYD
Ga0066681_107429771	3300005451	Soil	MPSYDRALHALRIWLDSWSGIGHVAVRMARQGYDLQLTRYDTTRR
Ga0070707_1004398721	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPSYDRALHALRSWLDCWSGIGHVAVGMARQGYDLQLTRYD
Ga0070707_1004511563	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPSYDRALHALRSWLDSWEGIGHVAVGMHRQGFDLQLTPYDDRGWRA
Ga0070707_1005258452	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MPSYDRALHALRTWLDSWSGRADSWSGIGHVTVGMARQGY
Ga0073909_103207811	3300005526	Surface Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYND
Ga0066697_106760071	3300005540	Soil	HALRTWLDSWAGIGHVAVGMDRQGYDLQLTQYDD*
Ga0066698_110248292	3300005558	Soil	MSSYDRSLHALRSWLDSWAGIGHVAVGMHRQGYDLQLTQYD
Ga0066699_102678692	3300005561	Soil	MVGCAGCSMPSYDRALHALRSWSDSWSGIGHVAVGMARQGYDLQLTRYDEK
Ga0066905_1001343426	3300005713	Tropical Forest Soil	YDRALWALRIWLDSWSGSGHVAVGMLRQGFDQLTQYDERG*
Ga0066903_1002286275	3300005764	Tropical Forest Soil	MLSYNRALHALRSWLDSWSGVGHVAVGMHRQGYDLQLTQYDDRG*
Ga0066903_1008811131	3300005764	Tropical Forest Soil	MPSNDRALWALLTWLDSWPGIGHVAVGMHRQSFDLQLTQYDERGWRAMFL
Ga0066903_1013317491	3300005764	Tropical Forest Soil	LSDDRAPHALRTWLDSGPGIGHVAVGMPPKGYDLQLTQYDDRGWRARF*
Ga0066903_1034631072	3300005764	Tropical Forest Soil	LVSRSRRPSYNRALWALRTRLDSWSGIGRVAFAMAHHGFDL
Ga0066903_1083218711	3300005764	Tropical Forest Soil	VGFAGCSMPSYDRALWALRTWLDSWPGIRHVAVGMHRQGFDLQLTHSRARDRQMGR*
Ga0075432_103670042	3300006058	Populus Rhizosphere	MSSYDRALWALRTWLDSWAGIGRIAVGMASQGYKLQLTQYDDRDWHAQLGANY*
Ga0066665_101837231	3300006796	Soil	LGFAGCSLPSYDRELHALRTWMDSWSGIGHIAVGMHRQGFDLQLTQYDERGWRATF
Ga0066665_115614911	3300006796	Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDCN*
Ga0066659_111654543	3300006797	Soil	LPPVLHALHRWLDSWLGIGLVPVGTARECYDLQLTRYDEQGW*
Ga0075428_1006759681	3300006844	Populus Rhizosphere	DRALWALRTWLDSWAGIGRIAVGMASQGYKLQLTQYDDRDWHAQLGANY*
Ga0075428_1022456562	3300006844	Populus Rhizosphere	MSSYDRALHALRTWLDSWAGIGHVVVGMHRQGYDLQVTQHHDRSG
Ga0075433_114035171	3300006852	Populus Rhizosphere	MPSYDRSLHALRTWLDSWAGIGRIAAGMHRQGFDLQLTQYD
Ga0075425_1008314581	3300006854	Populus Rhizosphere	MPSYDRALHAHRTWLDSWSGTGHVAVGMHRQGFDLQLTQYDERGWRA
Ga0075425_1019205611	3300006854	Populus Rhizosphere	MAPLGFAGCALPSYDCALWALRTWLDSWPGVGHVAVGMHRQGYDLQLTQY
Ga0075425_1026650261	3300006854	Populus Rhizosphere	MPSYDRALWALRTWLDSWPGVGRVAVGMHRQGFDLQLTQYDDRGW
Ga0075424_1017810052	3300006904	Populus Rhizosphere	YDRALWALRTWLDSWPGIGHVAVGMHRQSYDLQLTQYDHRG*
Ga0075435_1004024132	3300007076	Populus Rhizosphere	MLSYDSALWTLRTWLDSWSGVGYVAVGMHRQGYDLQLTQYDDR
Ga0075435_1004049552	3300007076	Populus Rhizosphere	MPSYDRTLWALRTWLDRWSGIGHVTVGMHRQGYDPQLTQY
Ga0066710_1003114222	3300009012	Grasslands Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDERGGDDFRYAGRSVSRFTAIVQ
Ga0075418_100991945	3300009100	Populus Rhizosphere	MPSYDRTLWALRKWLDSWPGIGHVAAGMHRQGFDLQLTVCHGVLAE*
Ga0075418_115712591	3300009100	Populus Rhizosphere	MTALWALRKWLDSWSSVDHVAVGMHRQGFDLQLTQ
Ga0066709_1004686594	3300009137	Grasslands Soil	MPSYDRVLHALRLYLDSWAGIGRLAVGMARQGYDLQLTRYDERG
Ga0114129_112261202	3300009147	Populus Rhizosphere	MPSYDRVLHALRTWLDSWSGIGHVAVGMHRQGFDLH*
Ga0114129_114905644	3300009147	Populus Rhizosphere	GFARCSMPSYDRTLWALRKWLDSWPGIGHVAAGMHRQGFDLQLTVCHGVLAE*
Ga0111538_123561991	3300009156	Populus Rhizosphere	MPSYDRALWALRTWLDSWSGIGHVAVGMHRQVFDLQLTQYDDRG*
Ga0075423_111912042	3300009162	Populus Rhizosphere	MAALGFAGCSMPSYDRALWALRSWLDSWSGIGHVAVGMHRFGLQLDQ
Ga0126380_102713171	3300010043	Tropical Forest Soil	MPSYDRALWALRSWLDSRSGIGHVAVGMHRQGFDLQLTQYDERG
Ga0126380_103926932	3300010043	Tropical Forest Soil	CSAPSYDRALWAVRIWLDSWPGIGHVAVGMHRQGYDLQLTQYDESVLRAMTC*
Ga0126380_115312622	3300010043	Tropical Forest Soil	DRALWALRRWLDSWSGVGHVAVGMHRQGFDLQLTQYDERG*
Ga0126380_115586293	3300010043	Tropical Forest Soil	MPSRHPALHALRSYLDSWAGIGRIAAGMHRQGYDLQLTQYDERG*
Ga0126380_117453282	3300010043	Tropical Forest Soil	MPSYDRALWALRSWLDSWPGIGYVAVGMHRQGYDLQLTQYDERGRARDFLHDRDG
Ga0126384_118892332	3300010046	Tropical Forest Soil	LCGRPEGKPRYDHLLWALRSRLDAWAGTGRVAASMAHQGFDLQLARYDERGWRAT
Ga0126384_123169421	3300010046	Tropical Forest Soil	MTRALWALRTYLDSWAGIGRVAAGMHRQGYDLQLTQYDERG*
Ga0126382_108192201	3300010047	Tropical Forest Soil	RSYDCALWALRSYLDSWAGIGRVAVGDASPGYDLQLTQRR*
Ga0126373_114001712	3300010048	Tropical Forest Soil	MAAIGFAGCSMLSYDRALHALRSWLDSWPGTGHVAVGIHRQGLDLQLTQYDERGW
Ga0134071_101508911	3300010336	Grasslands Soil	RALHALRTWLDSWAWIGHVTVGMARQGYDLQLTRYDERG*
Ga0126376_102928122	3300010359	Tropical Forest Soil	MPSYDRALRALRTRLDSWSGVGHVAAGIHRQGFDLQFTQYDKHSWRATI*
Ga0126376_109813852	3300010359	Tropical Forest Soil	MTRAPWALRTYLDSWAGIGRVPAGMHRQGYDLQLTQYDERG*
Ga0126372_100652851	3300010360	Tropical Forest Soil	MLSYDRALWALRTWLDAWPGIGHVAVGMHRQGFDL*
Ga0126372_102599143	3300010360	Tropical Forest Soil	MPSYYRALWALRAWLDSWPGIGHVAAGTHRQGFDLQLTQYDEHGWRA
Ga0126372_103846882	3300010360	Tropical Forest Soil	MPSYDRALWALRTWLDSSSGVGHVAVGMHRQGFDLQLTQYDGRGGRAYLQL
Ga0126372_108828332	3300010360	Tropical Forest Soil	MPSYDRALWALRTWLDSWPGIGHVAVGMAHQGYDLQLTRYDERG*
Ga0126372_119456072	3300010360	Tropical Forest Soil	MLSYDRVLHALRTWLDSWPGIGHVAVGMHRQGYDLQLT
Ga0126378_114780751	3300010361	Tropical Forest Soil	MPSYDRALWALRTWLDSWPGIGHVAVGMHRQGYDLQLTQYDE
Ga0126377_102467532	3300010362	Tropical Forest Soil	MPSHDRALSALRTWLDSWFGIGHVVVGMARQGYDLEPTR*
Ga0126377_104232472	3300010362	Tropical Forest Soil	MPSYDHALHALHSWLDSWSGIGHIAVGMHWQGFDLQLTYYD
Ga0126377_104632704	3300010362	Tropical Forest Soil	VGFPRPSYDRSLWALRTWLDSWAGIGRVAVGMAHQGFDLQLTRYDERG*
Ga0126377_105424962	3300010362	Tropical Forest Soil	MLSYDHALWALRRWLDSWSGVGHVAVGMHRQGFDLQLTRYDERGWRA
Ga0126377_110841642	3300010362	Tropical Forest Soil	MPAYDRALWALRTWLGSWPGVGHVAVGMHRQGFDLQL
Ga0126377_118771381	3300010362	Tropical Forest Soil	MPSYDRALWALRTWLDSWTGIGRIAVGMHRQGYDLQLT
Ga0126379_117741812	3300010366	Tropical Forest Soil	RPVGYAGCSMPSYDRALHALRTWLDSWSGIGRVAVGMPRHGYDLHSVR*
Ga0126379_137417611	3300010366	Tropical Forest Soil	MPSYDRALWALRSYVDSWDGIGRVAVGMHRQRMTYS*
Ga0126381_1028470072	3300010376	Tropical Forest Soil	MPSYDRVLWALRTWLDSWPGIGHVTVGMHHQGFDLQLTQYD
Ga0126383_103324304	3300010398	Tropical Forest Soil	LPSYDRALWALRTWLDSWLGVGRIAVGMHRQGFDLQLTQYDD
Ga0126383_107795201	3300010398	Tropical Forest Soil	MLSYDRALWALRTWLDSWSGIGHIAVGMHRQGFDLQLTQYDDRG
Ga0126383_111173351	3300010398	Tropical Forest Soil	LPSSDRALWALRTWLDSWSGVGHVAVGMHRQGFDLQLTQYDDRGW
Ga0126383_114883841	3300010398	Tropical Forest Soil	RALWALRTWLDSWPGIGHVAVGMHHQGFDLQLTLCHSVLAE*
Ga0124844_11318672	3300010868	Tropical Forest Soil	KRSLWALRTWLDSWPGVGHVAAGMHRQGFELQFTQYDERSWRATI*
Ga0137383_112226412	3300012199	Vadose Zone Soil	MSSYDRALWALRTWLDSWPGIGHVAVGMHRQRCYDLQLTQYDERGWRASARPCSS*
Ga0137378_100305428	3300012210	Vadose Zone Soil	MSSYDRALWALRTWLDSWPGIGHAAVGMHRQRCYDLQLTQYDERGWRASARPCSS*
Ga0137378_108049232	3300012210	Vadose Zone Soil	MSSYDRALHALRSWLDSWSGIGHVAVGMARQGYDLQL
Ga0137377_102331772	3300012211	Vadose Zone Soil	MPSYDCALHALRTWLDSWSGIGHVAVGMARQGYDLQVTR*
Ga0137377_113050041	3300012211	Vadose Zone Soil	MLSYDRALHALRTWLDCWSGIGHVVVGMARQGYDLQLTRYDEK
Ga0137386_102742731	3300012351	Vadose Zone Soil	MPSYDRALHALRTWLDSWSGIGRVAVGMAHQGYDLQLTRYDE
Ga0137384_110562721	3300012357	Vadose Zone Soil	MPSYDRALHALRTWIDSWTGIGHVTVGMHRQGYDLQLTQYDE
Ga0126375_104666702	3300012948	Tropical Forest Soil	VLHALRALWALRTWLDSWPGVGHVAVGMHRQGFDLQLTQYDERGWRASEQV*
Ga0126375_110923222	3300012948	Tropical Forest Soil	MLSHDRALYAMRSWLDSRPGIGHVAVGMQRQASICN*
Ga0126375_113976372	3300012948	Tropical Forest Soil	LPSYDRALWALRTWLDSWPGIGHIAVGMHRQGFDLQLTQYDDSGWRASEQV*
Ga0126369_101641792	3300012971	Tropical Forest Soil	MLSYDRALHALRSGLDPWSGISHVAVGRHRQDFDLQLTQYDARGWRAQLGDKS*
Ga0126369_106149881	3300012971	Tropical Forest Soil	MPSYDRALWALRTWLDSWTGIGHVAVGMHRQGYGLQ
Ga0163162_106482502	3300013306	Switchgrass Rhizosphere	MPSYDRALWALRTWLDSWSGVGHVAVGMHRQGYDLQLTQYDE
Ga0132258_103831191	3300015371	Arabidopsis Rhizosphere	MLSYEPALRTLRTWLDSWPGVGHVAVGMHRQSYDL*
Ga0132258_107702743	3300015371	Arabidopsis Rhizosphere	MTSYDRALWALRTWVDSWTGIGHVAVGMHRQDTTYS*
Ga0132258_126103032	3300015371	Arabidopsis Rhizosphere	MPSYDRALWALRTWLSWSGIGHVVVGMRRQGFDLQLT
Ga0132256_1004927952	3300015372	Arabidopsis Rhizosphere	MPSYDRALWALRTWLDSWPGIGSVAVGMHRQGYDLQLTQY
Ga0132257_1005646811	3300015373	Arabidopsis Rhizosphere	MPSYDRALWALRTWLDSWPGIGRVAVSMHRQGFDLQLTQYDD
Ga0132257_1022743892	3300015373	Arabidopsis Rhizosphere	MPSYDRALWALRTWLDSWPRIGHVSVGMHRQGFDLQLTQYDDRG*
Ga0182033_102428601	3300016319	Soil	MPSYDRALWALRTWLDSWTGIGHVAVGMHRQGFDLPLTQYDD
Ga0182033_117663902	3300016319	Soil	MPSYDRALWALRSWLDSWSGIGHVAVGMHRQGFDLQLTQYDERG
Ga0182040_109446851	3300016387	Soil	MPSYDRALWALRTLLDSWSGIGHVAVGMYRQGFDLQLTQYDER
Ga0134112_105155881	3300017656	Grasslands Soil	LQTWLDSWEGIGQVAVGMHRQGYDLQLTQYDESWLACDLLHDGDGALAH
Ga0184639_101070534	3300018082	Groundwater Sediment	VRLLSYDRALWALRFWLDSWSGIGHVAVGMAREGYDLQLTRYD
Ga0126371_106005083	3300021560	Tropical Forest Soil	MLSCDRALWALRIWLDSWSGVGRVAVGMHRQGFDL
Ga0126371_111052492	3300021560	Tropical Forest Soil	MPSSDRALHALRTWPDSWPAIGHVAVGMHRQGFDLQLT
Ga0207646_101984752	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	SYDRALQALCTWLDSWSGIGHVTVGMARQGFDLQLTRYDEKG
Ga0207704_105415303	3300025938	Miscanthus Rhizosphere	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDDK
Ga0209237_10606433	3300026297	Grasslands Soil	MPSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDERGGDDFRYAGRSVS
Ga0209238_11571562	3300026301	Grasslands Soil	MPSYDRALHALRTWLDSWSGIGHVAVGMARQDATTLDGH
Ga0209761_10899745	3300026313	Grasslands Soil	VGFTGYSMRSYDRSSTPSRTWLDSWSGIGHVTVGMARQGYDL
Ga0209154_10681731	3300026317	Soil	MPSYDRALHALRSWSDSWSGIGHVAVGMARQGCDLQLTRYDEKLAGHVL
Ga0209802_10087435	3300026328	Soil	MPSYDRALWALRTWLDSWSGIGHVAVGMHRQGFDLQLTQYDDRG
Ga0209803_10363611	3300026332	Soil	MPSYDRALHALRSWLDSWSGIGHVTVGMARQGYDLQLTRYD
Ga0209158_11992721	3300026333	Soil	MPSYDRALHALRSWLDSWSGIGHVTVGMARQGYDLQL
Ga0209160_11761342	3300026532	Soil	MVGCAGCSMPSYDRALHALRSWSDSWSGIGHVAVGMARQGCD
Ga0209887_10355162	3300027561	Groundwater Sand	VIDHRALSALRFWLDSWSGIGVIAAGMARQARALQLTRYD
Ga0209465_104301081	3300027874	Tropical Forest Soil	MAAVGFAGCSMLSYDRALWALRSWLDSWPGVGHLVAGMHRQGFDVQLTQY
Ga0209481_103847773	3300027880	Populus Rhizosphere	LPSHERALHALRTWLDSWSGIGHVAVGMYRQGFDLQLTRQ
Ga0209382_101936012	3300027909	Populus Rhizosphere	MPSYDRTLWALRKWLDSWPGIGHVAAGMHRQGFDLQLTVCHGVLAE
Ga0209382_107530271	3300027909	Populus Rhizosphere	VTLRAAPRHPALAAAHGCLDSWRGIGDVVVGMHRQGYDVQLTQYDARG
Ga0209382_113937311	3300027909	Populus Rhizosphere	MPSYDRALWALRWWLDLWAGIGHVEVGMHRQGYDLQLTQYDERGW
Ga0307278_100174802	3300028878	Soil	MLSYDRALWALRFWLDSWPGIGAIATGMARQGYEIQLTRYDEKG
Ga0307497_100274682	3300031226	Soil	MAALGFAGCSMLSYDRALHALRTWLDSWEGIGHVAVGMHRQGYDLQLTQYDD
Ga0318516_105109582	3300031543	Soil	MPSYDRALWALRTWLDSWSGIGRIAVGMARQGYDLQLTR
Ga0318534_107733881	3300031544	Soil	MLSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDDRGKRD
Ga0318541_108023951	3300031545	Soil	MIGRWALRTWLDSWPGVGHVAVGMHRQGYDLQLPQYDDS
Ga0310886_108306861	3300031562	Soil	MPSYDRALWALCTWLDSWSGIGRVAVGMHRQGFDLQLTQ
Ga0318574_105783832	3300031680	Soil	MLSYGRAPWALRAWLDSWPGVGHVAVGMHRHGYDLQLTQYDERAWCTSEQ
Ga0307469_101461342	3300031720	Hardwood Forest Soil	MPSYDRALHALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDD
Ga0307469_102631301	3300031720	Hardwood Forest Soil	MIVSLWALRFRLESLEGIGRVMVGMARQGFDLELTRYE
Ga0318494_103034691	3300031751	Soil	MLSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLTQYDDRGKRDLLH
Ga0318535_104983691	3300031764	Soil	MAALGFAGCSMLSYDRALHALRAWLDSWAGIGRVAVGMHRQGFDLQLTQY
Ga0318521_109491752	3300031770	Soil	MLSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQLT
Ga0318557_103772961	3300031795	Soil	MPSNDRALHALRSWLDSWSGVGRVAVGMHRQGFDLQLTQYDDQGW
Ga0318576_101137171	3300031796	Soil	MLSYDRALWALRTWLDSWAGIGHVAVGMHRQGYDLQ
Ga0307473_106227191	3300031820	Hardwood Forest Soil	MPSYDRALWALRTWLDSWSGIGHVAVGMARQSYDLQLTRYDEKGWRATF
Ga0318551_105964491	3300031896	Soil	MIGRWALRTWLDSWPGVGHVAVGMHRQGYDLQLPQYDD
Ga0306923_101271312	3300031910	Soil	MLSYGRAPWALRAWLDSWPGVGHVAVGMHRHGYDLQLTQYDERAWCTSEQV
Ga0306921_102281051	3300031912	Soil	MPTSDRALHALRFWLDSWPGIGHVAVGMHRQGFDLQLTQYDERGWRASFY
Ga0310912_102115182	3300031941	Soil	MAAVGFAGCSMPSNHRALWALRKWLDSWPGFGHVAVGMHSQDFDLQLTQYDDRG
Ga0306926_112820021	3300031954	Soil	SMLSCDRALHALRSWLNSWSGVGHVAVGMHRQGHDLQLTQYDERAVAGDVLS
Ga0318570_104230821	3300032054	Soil	MPSYDRALWALRTWLDSWPGIGHVAVGMHRQGFDLQLTQYDERGWRATF
Ga0318533_104902661	3300032059	Soil	MPSYDRALWALRTWLDSWTGIGHVAVGMHRQGFDL
Ga0307471_1009981042	3300032180	Hardwood Forest Soil	MPSNRALWALRAWLDSWSGIGHIAVGMHRQGFDLQLTQYDERGWRATF
Ga0307471_1013203173	3300032180	Hardwood Forest Soil	MLSYDRALHALRAWLDSWTGIGHVAAGMHRQGYDLQLTQYGGR
Ga0306920_1034875411	3300032261	Soil	MFPSSDLWALRSWLDSWPGIGHVAAGMHRQGFDLQLTQ

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F044808

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences