NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F044757

Metagenome / Metatranscriptome Family F044757

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F044757
Family Type Metagenome / Metatranscriptome
Number of Sequences 154
Average Sequence Length 41 residues
Representative Sequence LRLGVALWHGGLPVDVLPAEGFLDVHLGEENSAWPPE
Number of Associated Samples 126
Number of Associated Scaffolds 154

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 91.56 %
% of genes from short scaffolds (< 2000 bps) 89.61 %
Associated GOLD sequencing projects 117
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (92.208 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(34.416 % of family members)
Environment Ontology (ENVO) Unclassified
(36.364 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(39.610 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 18.46%    Coil/Unstructured: 81.54%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 154 Family Scaffolds
PF03551PadR 3.90
PF02239Cytochrom_D1 3.25
PF00793DAHP_synth_1 2.60
PF10077DUF2314 0.65
PF13620CarboxypepD_reg 0.65
PF03544TonB_C 0.65
PF00009GTP_EFTU 0.65
PF05016ParE_toxin 0.65
PF08530PepX_C 0.65
PF08264Anticodon_1 0.65
PF00400WD40 0.65
PF03065Glyco_hydro_57 0.65
PF13590DUF4136 0.65
PF10282Lactonase 0.65
PF01661Macro 0.65
PF00069Pkinase 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 154 Family Scaffolds
COG1695DNA-binding transcriptional regulator, PadR familyTranscription [K] 3.90
COG1733DNA-binding transcriptional regulator, HxlR familyTranscription [K] 3.90
COG1846DNA-binding transcriptional regulator, MarR familyTranscription [K] 3.90
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 2.60
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.65
COG2110O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domainTranslation, ribosomal structure and biogenesis [J] 0.65
COG2936Predicted acyl esteraseGeneral function prediction only [R] 0.65

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms92.21 %
UnclassifiedrootN/A7.79 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2032320005|FACEOR_FY84VJD01DK7CUAll Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21517Open in IMG/M
2032320006|FACEOR_FYWIORV02I6JZAAll Organisms → cellular organisms → Bacteria514Open in IMG/M
3300001593|JGI12635J15846_10311121All Organisms → cellular organisms → Bacteria981Open in IMG/M
3300002245|JGIcombinedJ26739_101238272All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300002245|JGIcombinedJ26739_101754305All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300004080|Ga0062385_10276359All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300004091|Ga0062387_101377430All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300004152|Ga0062386_100560300All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300005167|Ga0066672_10496328All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300005187|Ga0066675_10250735All Organisms → cellular organisms → Bacteria → Acidobacteria1264Open in IMG/M
3300005187|Ga0066675_11092202All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300005434|Ga0070709_11188766All Organisms → cellular organisms → Bacteria612Open in IMG/M
3300005534|Ga0070735_10489837All Organisms → cellular organisms → Bacteria733Open in IMG/M
3300005553|Ga0066695_10907129All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300005557|Ga0066704_10744670All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium613Open in IMG/M
3300005560|Ga0066670_10372483All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium872Open in IMG/M
3300005843|Ga0068860_100400830All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211357Open in IMG/M
3300006031|Ga0066651_10814128All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21507Open in IMG/M
3300006059|Ga0075017_100455946All Organisms → cellular organisms → Bacteria966Open in IMG/M
3300006163|Ga0070715_10357611All Organisms → cellular organisms → Bacteria799Open in IMG/M
3300006173|Ga0070716_100010632All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4618Open in IMG/M
3300006804|Ga0079221_10936075All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300007258|Ga0099793_10027694All Organisms → cellular organisms → Bacteria → Acidobacteria2382Open in IMG/M
3300007258|Ga0099793_10448019All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300007265|Ga0099794_10425090All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium695Open in IMG/M
3300009038|Ga0099829_10973859All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300009088|Ga0099830_10996746All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300009089|Ga0099828_11027896All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300009089|Ga0099828_11803912All Organisms → cellular organisms → Bacteria537Open in IMG/M
3300009098|Ga0105245_10759719All Organisms → cellular organisms → Bacteria1006Open in IMG/M
3300009623|Ga0116133_1138618All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21633Open in IMG/M
3300009635|Ga0116117_1194157All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300010343|Ga0074044_10274158All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1112Open in IMG/M
3300010398|Ga0126383_11835926All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300011270|Ga0137391_10224039All Organisms → cellular organisms → Bacteria1633Open in IMG/M
3300011270|Ga0137391_10906586All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium721Open in IMG/M
3300012096|Ga0137389_10913100All Organisms → cellular organisms → Bacteria753Open in IMG/M
3300012096|Ga0137389_11234378All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300012189|Ga0137388_12034699All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300012199|Ga0137383_10547851All Organisms → cellular organisms → Bacteria847Open in IMG/M
3300012203|Ga0137399_11135368All Organisms → cellular organisms → Bacteria658Open in IMG/M
3300012206|Ga0137380_11550336All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300012208|Ga0137376_11116272All Organisms → cellular organisms → Bacteria674Open in IMG/M
3300012351|Ga0137386_10498103All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300012351|Ga0137386_10923871All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium624Open in IMG/M
3300012356|Ga0137371_10471574All Organisms → cellular organisms → Bacteria970Open in IMG/M
3300012361|Ga0137360_11395604All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300012362|Ga0137361_11106984All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium713Open in IMG/M
3300012363|Ga0137390_10705733All Organisms → cellular organisms → Bacteria971Open in IMG/M
3300012363|Ga0137390_11878636All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300012582|Ga0137358_10332661All Organisms → cellular organisms → Bacteria1030Open in IMG/M
3300012582|Ga0137358_10752345All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300012922|Ga0137394_10732582All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300012922|Ga0137394_11630817All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21501Open in IMG/M
3300012923|Ga0137359_10061617All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3270Open in IMG/M
3300012925|Ga0137419_10438623All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300012925|Ga0137419_10893801All Organisms → cellular organisms → Bacteria731Open in IMG/M
3300012927|Ga0137416_10414313All Organisms → cellular organisms → Bacteria1144Open in IMG/M
3300012927|Ga0137416_10988550All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300012927|Ga0137416_11575601All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300012929|Ga0137404_11283632All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300012929|Ga0137404_11605861All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300012931|Ga0153915_13493505All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300012944|Ga0137410_12134544All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium500Open in IMG/M
3300012964|Ga0153916_12166766All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300012976|Ga0134076_10195849All Organisms → cellular organisms → Bacteria846Open in IMG/M
3300013503|Ga0120127_10083277All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300014154|Ga0134075_10460291All Organisms → cellular organisms → Bacteria566Open in IMG/M
3300014638|Ga0181536_10400833All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21613Open in IMG/M
3300015053|Ga0137405_1220065All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21519Open in IMG/M
3300015054|Ga0137420_1044430All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300015168|Ga0167631_1072382All Organisms → cellular organisms → Bacteria565Open in IMG/M
3300015241|Ga0137418_10834167All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300015241|Ga0137418_10836061All Organisms → cellular organisms → Bacteria685Open in IMG/M
3300016387|Ga0182040_10137500All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211721Open in IMG/M
3300017948|Ga0187847_10457231All Organisms → cellular organisms → Bacteria705Open in IMG/M
3300017955|Ga0187817_10189879All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211309Open in IMG/M
3300017973|Ga0187780_10872346All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300017975|Ga0187782_11348098All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300018013|Ga0187873_1234707All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter680Open in IMG/M
3300018019|Ga0187874_10256182All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300018062|Ga0187784_10613386All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21874Open in IMG/M
3300018088|Ga0187771_11842267All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21514Open in IMG/M
3300019786|Ga0182025_1208479All Organisms → cellular organisms → Bacteria1778Open in IMG/M
3300020061|Ga0193716_1077719All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211476Open in IMG/M
3300021170|Ga0210400_10696736All Organisms → cellular organisms → Bacteria835Open in IMG/M
3300021171|Ga0210405_10211675Not Available1536Open in IMG/M
3300021181|Ga0210388_10369666All Organisms → cellular organisms → Bacteria1261Open in IMG/M
3300021420|Ga0210394_10820293All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium812Open in IMG/M
3300021432|Ga0210384_10514869All Organisms → cellular organisms → Bacteria1077Open in IMG/M
3300021432|Ga0210384_10984322All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300021479|Ga0210410_10306638All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211425Open in IMG/M
3300022557|Ga0212123_10818350All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium558Open in IMG/M
3300024288|Ga0179589_10385496All Organisms → cellular organisms → Bacteria641Open in IMG/M
3300025912|Ga0207707_10917975All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300025914|Ga0207671_10263511All Organisms → cellular organisms → Bacteria1357Open in IMG/M
3300025915|Ga0207693_11174845All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia580Open in IMG/M
3300026285|Ga0209438_1077563All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300026298|Ga0209236_1081130All Organisms → cellular organisms → Bacteria1504Open in IMG/M
3300026304|Ga0209240_1287113All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21508Open in IMG/M
3300026318|Ga0209471_1147428All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300026332|Ga0209803_1148303All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium910Open in IMG/M
3300026514|Ga0257168_1098180All Organisms → cellular organisms → Bacteria651Open in IMG/M
3300026538|Ga0209056_10016880All Organisms → cellular organisms → Bacteria7208Open in IMG/M
3300026557|Ga0179587_11119341All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300027587|Ga0209220_1060958All Organisms → cellular organisms → Bacteria1004Open in IMG/M
3300027643|Ga0209076_1034639All Organisms → cellular organisms → Bacteria1413Open in IMG/M
3300027671|Ga0209588_1096645All Organisms → cellular organisms → Bacteria951Open in IMG/M
3300027678|Ga0209011_1064067All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300027725|Ga0209178_1264937All Organisms → cellular organisms → Bacteria624Open in IMG/M
3300027824|Ga0209040_10426814All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21609Open in IMG/M
3300027829|Ga0209773_10229850All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21775Open in IMG/M
3300027846|Ga0209180_10438558All Organisms → cellular organisms → Bacteria737Open in IMG/M
3300027846|Ga0209180_10512225All Organisms → cellular organisms → Bacteria671Open in IMG/M
3300027857|Ga0209166_10436662All Organisms → cellular organisms → Bacteria677Open in IMG/M
3300027862|Ga0209701_10274378All Organisms → cellular organisms → Bacteria → Acidobacteria977Open in IMG/M
3300027911|Ga0209698_10799806All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300028047|Ga0209526_10365603All Organisms → cellular organisms → Bacteria964Open in IMG/M
3300028145|Ga0247663_1052098All Organisms → cellular organisms → Bacteria690Open in IMG/M
3300028673|Ga0257175_1095685All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300029636|Ga0222749_10797793All Organisms → cellular organisms → Bacteria516Open in IMG/M
3300030520|Ga0311372_10229734Not Available3044Open in IMG/M
3300031708|Ga0310686_105883923All Organisms → cellular organisms → Bacteria559Open in IMG/M
3300031720|Ga0307469_10404792All Organisms → cellular organisms → Bacteria1166Open in IMG/M
3300031820|Ga0307473_10668887All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300031823|Ga0307478_10203722All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1593Open in IMG/M
3300031823|Ga0307478_11536838All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300031941|Ga0310912_10621820All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300031942|Ga0310916_10707962All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21852Open in IMG/M
3300031945|Ga0310913_10107297All Organisms → cellular organisms → Bacteria → Acidobacteria1896Open in IMG/M
3300031962|Ga0307479_10863671All Organisms → cellular organisms → Bacteria878Open in IMG/M
3300031962|Ga0307479_11929071All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300032035|Ga0310911_10043945All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2299Open in IMG/M
3300032160|Ga0311301_10362091All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2256Open in IMG/M
3300032160|Ga0311301_10700623All Organisms → cellular organisms → Bacteria1424Open in IMG/M
3300032180|Ga0307471_100947979All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300032180|Ga0307471_101445151All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium847Open in IMG/M
3300032180|Ga0307471_103886341All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300032261|Ga0306920_100493088All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211818Open in IMG/M
3300032893|Ga0335069_10842589All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidipila → unclassified Acidipila → Acidipila sp.1029Open in IMG/M
3300033290|Ga0318519_10144193All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_211326Open in IMG/M
3300033804|Ga0314863_082416All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_58_21669Open in IMG/M
3300033806|Ga0314865_201637Not Available535Open in IMG/M
3300033983|Ga0371488_0187737All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1051Open in IMG/M
3300034125|Ga0370484_0185594All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium566Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil34.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.39%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.49%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil5.84%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.90%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.25%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.60%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.60%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.95%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.95%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland1.30%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.30%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.30%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.30%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.30%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.30%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.30%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.30%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.30%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.30%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland1.30%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.65%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.65%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.65%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.65%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.65%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.65%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.65%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.65%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.65%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil0.65%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.65%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.65%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2032320005Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-EnvironmentalOpen in IMG/M
2032320006Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+EnvironmentalOpen in IMG/M
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005534Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1EnvironmentalOpen in IMG/M
3300005553Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005843Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2Host-AssociatedOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009623Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10EnvironmentalOpen in IMG/M
3300009635Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012206Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaGEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300013503Permafrost microbial communities from Nunavut, Canada - A23_5cm_12MEnvironmentalOpen in IMG/M
3300014154Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09212015EnvironmentalOpen in IMG/M
3300014638Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015168Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G4A, Ice margin, adjacent to proglacial lake)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300017948Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10EnvironmentalOpen in IMG/M
3300017955Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2EnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018012Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5EnvironmentalOpen in IMG/M
3300018013Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300020061Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1EnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025915Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026332Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138 (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026854Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)EnvironmentalOpen in IMG/M
3300027587Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027678Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028145Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK04EnvironmentalOpen in IMG/M
3300028673Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-BEnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030520III_Palsa_N2 coassemblyEnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031942Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033804Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_0_20EnvironmentalOpen in IMG/M
3300033806Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20EnvironmentalOpen in IMG/M
3300033983Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB23AN SIP fractionEnvironmentalOpen in IMG/M
3300034125Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
FACEORA_48401802032320005SoilVNRGELSLKGQKSLRLGVALWHGGLPVDVLPAEGFLEIPLGDELHSWPLEN
FACEORE_18849602032320006SoilKKEMLQLRGLQRLRIGVALWHGGLPMDVLPAEGFLDISLGDENSVWPLEPAI
JGI12635J15846_1031112113300001593Forest SoilRLGVALWHGGLPVDVLPAEGFLDVNLGEDNSAWPPE*
JGIcombinedJ26739_10123827213300002245Forest SoilPLKGQQKLRLGVALWHGGLPVDVLPAEGFLEISLGDESSWPIENS*
JGIcombinedJ26739_10175430523300002245Forest SoilQKSLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQYSWPLID*
Ga0062385_1027635913300004080Bog Forest SoilLKVGVALWHGGLPVDVLPSEALLEIPLGEDNAAWPLEQTQT*
Ga0062387_10137743023300004091Bog Forest SoilGLKSLRVGVALWHGGLPVDVLPSEALLEVPLGEENAAWTLE*
Ga0062386_10056030013300004152Bog Forest SoilGVSKLKVGVALWHGGLPVDILPSEAFLEIPLGEENASWPIEPA*
Ga0066672_1049632823300005167SoilKDQTRLKLGVALWHGGLPVDVLPAEGFLDILLGEDNFAWCPE*
Ga0066675_1025073523300005187SoilINLKGQTKLRLGVALWHGGLPVDVLPAEGFLNVDLGEDHSAWPPE*
Ga0066675_1109220223300005187SoilSLRLGVALWHGGLPVDVLPAEGFLEIALGDEQHSWPLEIAESSSAKTT*
Ga0070709_1118876613300005434Corn, Switchgrass And Miscanthus RhizosphereRSELNLKGQNKLRLGVALWHGGLPIDVLPAEGFLEIPLGDEFSWPVE*
Ga0070735_1048983713300005534Surface SoilHKLRLGVALWHGGLPVDVLPSEGFLEIPLGEEASWPIEDS*
Ga0066695_1090712913300005553SoilQLDLKGQSKLRLGVALWHGGLPVDMLPAEGFLDVPLGEDNFAWLPE*
Ga0066704_1074467023300005557SoilGVALWQGGLPVDVLPAEGWLEVKLGADNFAWPSEND*
Ga0066670_1037248313300005560SoilGVALWHGGLPVDVLPAEGFLDVSLGEENWAWPPEW*
Ga0068860_10040083023300005843Switchgrass RhizosphereVALWHGGLPVDVLPAEGILDVPLGEDNFAWPLEPLS*
Ga0066651_1081412823300006031SoilVAIHRGQLDLKGQSKLRLGVALWHGGLPVDMLPAEGFLDVPLGEDNFAWLPE*
Ga0075017_10045594623300006059WatershedsRLGVALWHGGLPVDVLPAEGFLDVNLGEENSAWTPES*
Ga0070715_1035761113300006163Corn, Switchgrass And Miscanthus RhizosphereLRLGVALWHGGLPVDVLPAEGFLEIALGDEQASWPIENA*
Ga0070716_10001063263300006173Corn, Switchgrass And Miscanthus RhizosphereVQKLRVGVALWHGGLPVDVLPAEGFLDVNLGEENSAWPVEPPL*
Ga0079221_1093607523300006804Agricultural SoilQAKLKLGVALWHGGLPVDVLPAEGALEIQLGEDNFAWPLVSNV*
Ga0099793_1002769413300007258Vadose Zone SoilKLRLGVALWHGGLPVDVLPAAGFLDVLLGEDHAAWPPE*
Ga0099793_1044801923300007258Vadose Zone SoilSFRLGVVLWHGGLPVDVLPAEGFLEVKLGEENFAWPLV*
Ga0099794_1042509013300007265Vadose Zone SoilSKLRLGVALWHGGLPVDVLPAEGFLDVNLGEENSAWPPE*
Ga0099829_1081717813300009038Vadose Zone SoilSGLPVDVLPAEGFLDVLLGEENSAWPPEDEKNSPER*
Ga0099829_1097385913300009038Vadose Zone SoilLKGQSNLRLGVALWHGGLPVDVLPAEGFLDVNLGEDHSAWPPES*
Ga0099830_1099674613300009088Vadose Zone SoilQINLKGQSNLRLGVALWHGGLPVDVLPAEGFLDVNLGEDHSAWPLES*
Ga0099828_1102789613300009089Vadose Zone SoilQTKLRLGVALWHGGLPVDVLPAEGFLDVNLGEDHSAWPPE*
Ga0099828_1180391213300009089Vadose Zone SoilQTKLKLVVALWHGGLPVDVLPVEGYLEVNLGEEHSAWPVEPAT*
Ga0099828_1185114023300009089Vadose Zone SoilALWHSGLPVDVLPAEGFLDVILGEENSAWPLESEKSSPE*
Ga0105245_1075971913300009098Miscanthus RhizosphereLWHGGLPVDVLPAEGILDVPLGEENFAWPLEPLA*
Ga0116133_113861823300009623PeatlandVALWHGGLPIDVLPAEGFLEVNLGEENSAWPVQSAD*
Ga0116117_119415723300009635PeatlandAKLRVGVALWHGGLPVDVLPSEALLEIPLGEENAAWAVASQQT*
Ga0074044_1027415813300010343Bog Forest SoilKGQSKIRLGVALWHGGLPIDVMPAEGFLEVGLGEENAAWGAE*
Ga0126378_1342510313300010361Tropical Forest SoilLWHGGLPVDVLPAEGFFDVPLGEENAAWAVEKEKAESR*
Ga0126383_1183592613300010398Tropical Forest SoilQAQKGLRLGVALWHGGLPVDVLPAEGFLEIPLGDDQHSWPVEP*
Ga0137391_1022403913300011270Vadose Zone SoilKLRLGVALWHGGLPVDVLPAEGILDVNLGEDHFAWQAE*
Ga0137391_1090658613300011270Vadose Zone SoilQSKLRLGVALWHGGLPVDVLPAEGFLDVNLGEENSAWPPE*
Ga0137389_1091310013300012096Vadose Zone SoilKGQTKLKLGVALWHGGLPVDVLPVEGYLEVNLGEEHSAWPVEPAT*
Ga0137389_1123437823300012096Vadose Zone SoilKGQTHLRLGVALWHGGLPVDVLPASGFLEVPLGEEHAAWLPE*
Ga0137388_1023703623300012189Vadose Zone SoilWHGGLPVDVLPAEGNLQVMLGEENAAWGVEEEVKK*
Ga0137388_1203469923300012189Vadose Zone SoilEKDQINVEGQTKLKLGVALWHGGLPVDVLPAEGFLDVDLGEETSSWPLK*
Ga0137383_1054785123300012199Vadose Zone SoilKLGVALWHGGLPVDVLPAEGFLDVPLGDDNFAWPCE*
Ga0137399_1113536813300012203Vadose Zone SoilLRLGVALWHGGLPVDVLPAEGFLDVHLGEENSAWPPE*
Ga0137380_1155033613300012206Vadose Zone SoilIKKDQINLEGQLRLKLGVALWHGGLPVDVLPAEGFLDVDLGEETSSWPLK*
Ga0137376_1111627223300012208Vadose Zone SoilRLGVALWHGGLPVDMLPAEGFLDVPLGEDNFAWLPE*
Ga0137386_1049810313300012351Vadose Zone SoilQTKLRLGVALWHGGLPVDVLPAEGFLDVNLGEDHSAWSPET*
Ga0137386_1092387113300012351Vadose Zone SoilQSKLRLGVALWHGGLPVDVLPAEGFLDVNLGEENWAWPPE*
Ga0137371_1047157423300012356Vadose Zone SoilLRVGVALWHGGLPVDVLPASGVLEIKLGEENTWAAESGP*
Ga0137360_1139560413300012361Vadose Zone SoilLGVALWHGGLPVDVLPAEGFLYVDLGEASSWPLK*
Ga0137361_1110698423300012362Vadose Zone SoilDQINLTGQTKLRLGVALWHGGLPVDVLPAAGFLDVLLGEDHAAWLPE*
Ga0137390_1067706113300012363Vadose Zone SoilLPVDVLPAEGFLDVLLGEENSAWPPEDEKSSPER*
Ga0137390_1070573323300012363Vadose Zone SoilRLGVALWHSGLPVDVLPAEGFLDVILGEENSAWPLESEKSSPE*
Ga0137390_1107013513300012363Vadose Zone SoilLWHSGLPVDVLPAEGFLDVTLGEEDSAWPTEDESRPGEQ*
Ga0137390_1187863613300012363Vadose Zone SoilKLKLGVALWHGGLPVDVLPAEGFLDVDLGEETSSWPLK*
Ga0137358_1033266113300012582Vadose Zone SoilALWHGGLPVDVLPAEGVLDMQLGEENFAWAIEPLAL*
Ga0137358_1075234513300012582Vadose Zone SoilKLRLGVALWHGGLPVDVLPAEGFLDVNLGEENWAWPPES*
Ga0137358_1106443813300012582Vadose Zone SoilLWHSGLPVDVLPSEGFLDVLLGEENSAWPPEDEKSSPER*
Ga0137394_1073258213300012922Vadose Zone SoilIQKDQINLTGQTKLRLGVALWHGGLPVDVLPAAGFLDVPLGEDHAAWLPE*
Ga0137394_1163081723300012922Vadose Zone SoilNRSEINLKGQSTLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPLET*
Ga0137359_1006161743300012923Vadose Zone SoilLGVALWHGGLPVDVLPAAGFLDVPLGEDHAAWLPE*
Ga0137419_1043862313300012925Vadose Zone SoilKLRLGVALWHGGLPVDVLPAEGFLDVHLGEENSAWPPE*
Ga0137419_1089380113300012925Vadose Zone SoilQTKLRLGVALWHGGLPVDVLPAAGFLDVLLGEDHAAWRPE*
Ga0137416_1041431323300012927Vadose Zone SoilAIHKDQINLTGQSKLRLGVALWHGGLPVDVLPAAGFLDVLLGEDHAAWLPE*
Ga0137416_1098855013300012927Vadose Zone SoilQINLKGQTHLRLGVALWHGGLPVDVLPASGFLDVPLGEEHAAWLPE*
Ga0137416_1157560113300012927Vadose Zone SoilKLRLGVALWHGGLPVDVLPAEGFLDVNLGEEHSAWPPEL*
Ga0137404_1128363213300012929Vadose Zone SoilKLRLGVALWHCGLPVDVLPAEGFLDVSLGEDHSAWPAE*
Ga0137404_1160586113300012929Vadose Zone SoilQINLKGQTHLRLGVALWHGGLPVDVLPASGFLEVPLGEEHAAWLPE*
Ga0153915_1349350523300012931Freshwater WetlandsLAGQTHLRLGAALWHGGLPVDVLPAEGTLDVSLGEEDSTWPLEPAS*
Ga0137410_1213454413300012944Vadose Zone SoilGVALWHGGLPVDVLPAAGFLDVPLGEDHAAWLPE*
Ga0153916_1216676613300012964Freshwater WetlandsHLRLGAALWHGGLPVDVLPAEGTLEASLGEEDSSWPLEPAS*
Ga0134076_1019584913300012976Grasslands SoilLRLGVALWHGGLPVDVLPAEGFLNVDLGEDHSAWPPE*
Ga0120127_1008327723300013503PermafrostVALWHGGLPVDVLPASGYLEVSLGEEHGAWAVQEKVLGN*
Ga0134075_1046029123300014154Grasslands SoilLKLGVALWHGGLPVDVLPAEGFLDVDLGEETSSWPLK*
Ga0181536_1040083323300014638BogGVALWHGGLPIDVLPAEGFLDVNLGEENSAWPVEGAG*
Ga0137405_122006523300015053Vadose Zone SoilVALWHEGLPVDVLPAEGYLDVNLGEENSAWPIEPPI*
Ga0137420_104443013300015054Vadose Zone SoilSTSKASQTKLRLGVALWHGGLPVDVLPAEGFLDVNLGEDHSAWPTE*
Ga0167631_107238223300015168Glacier Forefield SoilRCALNLKGQKTLRLGVALWHGGLPIDVLPAEGHLEVALGDEQSSWPIENA*
Ga0137418_1083416713300015241Vadose Zone SoilDQLNLNGQSKMKLGVALWHSGLPVDVLPAEGYLDVNLGEDFGAWPTE*
Ga0137418_1083606123300015241Vadose Zone SoilKGQKTLRLGVELWHGGLPVDVLPAEGFLEVALGDEQSSWPIENA*
Ga0182040_1013750013300016387SoilLNRFRLGVALWHGGLPIDVLPAEGYLEVLLGEENSAWAVE
Ga0187847_1045723133300017948PeatlandVALWHGGLPVDILPSEAFLEIPLGEENASWPLEAALP
Ga0187817_1018987923300017955Freshwater SedimentLRLGVALWHGGLPVDVLPAEGFLDIALGDEQASWPIETDEA
Ga0187780_1087234623300017973Tropical PeatlandALWHGGLPVDVLPAEGILDIDLGEENSAWPVEASS
Ga0187782_1134809823300017975Tropical PeatlandLRLGVALWHGGLPVDVLPAEGFLEIALGDEQSSWAIES
Ga0187810_1013463123300018012Freshwater SedimentGLPVDVLPAEGFFDVYLGEEHCAWAVEKEKSSAEPR
Ga0187873_123470723300018013PeatlandLVSIAIWSGGLPVDVLPVEGMLQVPLGEENFAWPAE
Ga0187874_1025618223300018019PeatlandGVALWHGGLPIDVLPAEGFLEINLGEENSAWAVEPAE
Ga0187784_1061338613300018062Tropical PeatlandKFTLGVALWHGGLPIDVMPAERFLEVQLGEENAAWAVEQ
Ga0187771_1184226713300018088Tropical PeatlandIGVALWHGGLPIDVLPADGFLEVNLGEENSAWAVEPAE
Ga0182025_120847943300019786PermafrostLKGQNTLRLGVALWHGGLPVDVLPAEGSLEIRAGDEQSSWPIETV
Ga0193716_107771933300020061SoilQTQLRLGVALWHAGLPVDVLPAEGFLNVSLGEDNSAWQFE
Ga0210400_1069673623300021170SoilRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPVEE
Ga0210405_1021167513300021171SoilIPLKGQKSLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHAWPIEN
Ga0210388_1036966623300021181SoilMTKFPIGVALWHGGLPVDVLPAEGFLDVSLGEEHSGWAVEEK
Ga0210394_1082029323300021420SoilGRTRFTVGVALWHGGLPIDVLPAEGFFDVQLGEEHSAWPAEP
Ga0210384_1051486913300021432SoilRLGVALWHGGLPVDVLPAEGFLEIALGDEQASWPIENS
Ga0210384_1098432213300021432SoilRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPLED
Ga0210410_1030663813300021479SoilLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQYSWPIEN
Ga0212123_1081835013300022557Iron-Sulfur Acid SpringKFKLGVALWHSGLPIDVLPAEGFLEVQLGEENAAWAVETAAS
Ga0179589_1038549613300024288Vadose Zone SoilGQNSLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPLES
Ga0207707_1091797513300025912Corn RhizosphereGVALWHGGLPVDVLPAEGFLEVNLGDEHFAWPPEEKP
Ga0207671_1026351123300025914Corn RhizosphereVRRSEINFKGQQKLRLGVALWHGGLPIDVLPAEGFLEIPLGEEASWPVENS
Ga0207693_1117484523300025915Corn, Switchgrass And Miscanthus RhizosphereSLKGQKSLRLGVALWHAGLPVDVLPAEGGLEIPLGDELASWPIENGPNSG
Ga0209438_107756313300026285Grasslands SoilRSELCLKGQKTLRLGVALWHGGLPVDVLPAEGFLEIPLGDEHHSWPLEE
Ga0209236_108113023300026298Grasslands SoilQSKLRLGVALWHSGLPVDVLPVEGFLDVSLGEEDSAWPTEA
Ga0209240_128711313300026304Grasslands SoilVGVALWHGGLPIDVLPAEGFFDVQLGEEHSAWPVDL
Ga0209471_114742823300026318SoilRDQLNLRGQSRLRLGVALWHGGLPVDVLPAESFLDVNLGEDHSAWPPE
Ga0209803_114830333300026332SoilLGVALWQGGLPVDVLPAEGWLEVKLGADNFAWPSEND
Ga0257168_109818013300026514SoilLRLGVALWHGGLPVDVLPAEGFLDVHLGEENSAWPPE
Ga0209056_1001688083300026538SoilGVALWHAGLPVDVLPAEGFLDVNLGEENSAWPPEP
Ga0179587_1111934113300026557Vadose Zone SoilALWHGGLPVDVLPAEGVLDVQLGEENFAWLIVPLTL
Ga0207727_10403213300026854Tropical Forest SoilKLTLGVALWHGGLPIDVMPAEGHLDVVLGEENAAWEMEKES
Ga0209220_106095823300027587Forest SoilRLGVALWHGGLPVDVLPAEGFLDVNLGEDNSAWPPE
Ga0209076_103463923300027643Vadose Zone SoilSKLRLGVALWHGGLPVDVLPAEGFLDVNLGEENWAWPPES
Ga0209588_109664523300027671Vadose Zone SoilRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPLVE
Ga0209011_106406713300027678Forest SoilQKTLRLGVALWHGGLPVDVLPAEGFLEVALGDEQHSWPIKD
Ga0209178_126493723300027725Agricultural SoilLKLGVALWHGGLPVDVLPAEGALEIQLGEDNFAWPLVSNV
Ga0209040_1042681423300027824Bog Forest SoilIGVALWHGGLPIDVLPAEGFLEVNLGEENSAWAVENAG
Ga0209773_1022985023300027829Bog Forest SoilRLTLGVALWHGGLPIDVMPAEGFIEVALGEENAAWPTE
Ga0209180_1043855813300027846Vadose Zone SoilKLRLGVALWHGGLPVDVLPAEGILHVNLGEEHSAWPLEE
Ga0209180_1051222513300027846Vadose Zone SoilLRLGVALWHGGLPVDVLPAEGFLDVNLGEEHSAWPPQ
Ga0209166_1043666223300027857Surface SoilKLRVGVALWNGGLPVDVLPAEGYLDILLGEEAFAWLVESAL
Ga0209701_1027437813300027862Vadose Zone SoilVALWQGGLPVDVLPAEGWLEVKLGADNFAWPTEND
Ga0209698_1079980613300027911WatershedsSKDDLGLKGQTRLKLGVALWHGGLPVDVLPAEGYLEVQLGEEHGAWPIE
Ga0209526_1036560313300028047Forest SoilELNLKGQKSLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPIEN
Ga0247663_105209823300028145SoilALWHAGLPVDVLPAEGILDVQLGEDNFAWPLEPLA
Ga0257175_109568513300028673SoilLSVALWHGGLPVDVLPAEGALHVAIGEEHFAWPVEPLAP
Ga0222749_1079779323300029636SoilRLGVALWHGGLPVDVLPAEGFLDVNLGEEHSAWLPED
Ga0311372_1022973413300030520PalsaEHIKLKGQKTLRLGIALWHGGLPVDVLPAAGFLEIPLGEDDCAWPIEE
Ga0310686_10588392323300031708SoilIQRSELLLKGQTKLKLGVALWHGGLPVDVLPAEGFLEVQLGEDHAAWPPEENS
Ga0307469_1040479213300031720Hardwood Forest SoilDQINLKGQTQLRLGVALWHGGLPVDVLPASGFLDVPLGEEHAAWLPE
Ga0307473_1066888713300031820Hardwood Forest SoilQINLAGQTKLRLGVALWHGGLPVDVLPASGFLDVMLGEDHAAWLPE
Ga0307478_1020372213300031823Hardwood Forest SoilVNRGEISLKGQKSLRLGVALWHGGLPVDVLPAEGFLEIPLGDEQHSWPIEN
Ga0307478_1153683813300031823Hardwood Forest SoilTSLRLGVALWHGGLPVDVLPAEGFLEIPLGEEQHAWPVEN
Ga0310912_1062182023300031941SoilVALWHGGLPVDVLPAEGIVDVPLGEEHFAWPNEPLAT
Ga0310916_1070796223300031942SoilNRFRLGVALWHGGLPIDVLPAEGFLEVLLGEEHSAWPVE
Ga0310913_1010729713300031945SoilSLGVALWHGGLPIDVLPAEGFLDVYLGEENSAWAVG
Ga0307479_1086367123300031962Hardwood Forest SoilGVALWHGGLPVDVLPSEAFLDVQLGEENSAWPVEPAQ
Ga0307479_1192907123300031962Hardwood Forest SoilVGVALWNGGLPVDVLPAEGYLDIQLGEEAFAWAIEPIL
Ga0310911_1004394513300032035SoilGVALWHGGLPVDVLPAEGILDVPLGEDNFAWPLEPLS
Ga0311301_1036209133300032160Peatlands SoilGQTKLKLGVALWHGGLPVDVLPAEGFLEVNLGEENSAWPPEDLA
Ga0311301_1070062313300032160Peatlands SoilGVALWHGGLPVDVLPAEGFLDVNLGEENSAWMPES
Ga0307471_10094797913300032180Hardwood Forest SoilTKLRLGVALWHGGLPVDVLPASGFLDVMLGEDHAAWLPE
Ga0307471_10144515113300032180Hardwood Forest SoilVGVALWHGGLPIDVLPAEGFFDVHLGEEHSAWPVDP
Ga0307471_10388634113300032180Hardwood Forest SoilLGVALWHGGLPVDVLPAEGFLEIPLGDEQYSWPLEE
Ga0306920_10049308823300032261SoilRLGVALWHGGLPIDVLPAEGYLEVLLGEENSAWAVE
Ga0335069_1084258923300032893SoilSARSTLELGVALWHGGLPVDVLPAEGALTISLGEDYFAW
Ga0318519_1014419323300033290SoilKLMLGVALWHGGLPVDFLPAEGLLDIQLGEDNFAWPPE
Ga0314863_082416_3_1163300033804PeatlandGVALWHGGLPIDVLPAEGFLEVNLGEENSAWAVEAAE
Ga0314865_201637_428_5353300033806PeatlandGVTLWHGGLPVDVLPAQGSLTVAFGREVFAWAIGA
Ga0371488_0187737_3_1283300033983Peat SoilKFPIGVALWHGGLPIDVLPADGFLEVNLGEENSAWPVETTE
Ga0370484_0185594_22_1593300034125Untreated Peat SoilLRLGVALWHCGLPVDVLPASGFLDVSFGEEHAAWPIETVEADSKK

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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