NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F044709

Metagenome / Metatranscriptome Family F044709

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F044709
Family Type Metagenome / Metatranscriptome
Number of Sequences 154
Average Sequence Length 43 residues
Representative Sequence KTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS
Number of Associated Samples 127
Number of Associated Scaffolds 154

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 3.92 %
% of genes near scaffold ends (potentially truncated) 95.45 %
% of genes from short scaffolds (< 2000 bps) 83.77 %
Associated GOLD sequencing projects 116
AlphaFold2 3D model prediction Yes
3D model pTM-score0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.052 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(32.468 % of family members)
Environment Ontology (ENVO) Unclassified
(29.221 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(55.195 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 23.53%    Coil/Unstructured: 76.47%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.34
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 154 Family Scaffolds
PF07969Amidohydro_3 31.17
PF02113Peptidase_S13 12.99
PF01904DUF72 7.79
PF01380SIS 7.79
PF01450IlvC 4.55
PF01427Peptidase_M15 4.55
PF07991IlvN 3.25
PF07908Obsolete Pfam Family 1.95
PF13620CarboxypepD_reg 1.30
PF01019G_glu_transpept 1.30
PF00069Pkinase 1.30
PF01418HTH_6 0.65
PF13594Obsolete Pfam Family 0.65
PF10369ALS_ss_C 0.65
PF13378MR_MLE_C 0.65
PF00920ILVD_EDD 0.65
PF13710ACT_5 0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 154 Family Scaffolds
COG0059Ketol-acid reductoisomeraseAmino acid transport and metabolism [E] 15.58
COG2027D-alanyl-D-alanine carboxypeptidaseCell wall/membrane/envelope biogenesis [M] 12.99
COG1801Sugar isomerase-related protein YecE, UPF0759/DUF72 familyGeneral function prediction only [R] 7.79
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 5.19
COG2173D-alanyl-D-alanine dipeptidaseCell wall/membrane/envelope biogenesis [M] 4.55
COG0499S-adenosylhomocysteine hydrolaseCoenzyme transport and metabolism [H] 3.25
COG0129Dihydroxyacid dehydratase/phosphogluconate dehydrataseCarbohydrate transport and metabolism [G] 1.30
COG0405Gamma-glutamyltranspeptidaseAmino acid transport and metabolism [E] 1.30
COG1737DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domainsTranscription [K] 0.65


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.05 %
UnclassifiedrootN/A1.95 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2170459012|GOYVCMS02H5LTJAll Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300001527|A3513AW1_1608675All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10513Open in IMG/M
3300002914|JGI25617J43924_10161463All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae761Open in IMG/M
3300003223|JGI26343J46809_1000574All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2170Open in IMG/M
3300004092|Ga0062389_101496232All Organisms → cellular organisms → Bacteria859Open in IMG/M
3300004092|Ga0062389_103410629All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300004635|Ga0062388_102624671All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300005172|Ga0066683_10071850All Organisms → cellular organisms → Bacteria → Acidobacteria2073Open in IMG/M
3300005175|Ga0066673_10014844All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter3454Open in IMG/M
3300005435|Ga0070714_101775170All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300005450|Ga0066682_10891505All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300005529|Ga0070741_10813846All Organisms → cellular organisms → Bacteria → Acidobacteria814Open in IMG/M
3300005541|Ga0070733_10124416All Organisms → cellular organisms → Bacteria1660Open in IMG/M
3300005556|Ga0066707_10567053All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300005569|Ga0066705_10256173All Organisms → cellular organisms → Bacteria1109Open in IMG/M
3300005586|Ga0066691_10549250All Organisms → cellular organisms → Bacteria → Acidobacteria689Open in IMG/M
3300005602|Ga0070762_11123826All Organisms → cellular organisms → Bacteria → Acidobacteria542Open in IMG/M
3300005610|Ga0070763_10808885All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300005921|Ga0070766_10179382All Organisms → cellular organisms → Bacteria → Acidobacteria1314Open in IMG/M
3300005952|Ga0080026_10233973All Organisms → cellular organisms → Bacteria551Open in IMG/M
3300006032|Ga0066696_10468576All Organisms → cellular organisms → Bacteria826Open in IMG/M
3300006046|Ga0066652_101141127All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300006172|Ga0075018_10072593All Organisms → cellular organisms → Bacteria1478Open in IMG/M
3300006176|Ga0070765_101407993All Organisms → cellular organisms → Bacteria → Acidobacteria657Open in IMG/M
3300006176|Ga0070765_102160898All Organisms → cellular organisms → Bacteria519Open in IMG/M
3300006796|Ga0066665_11300236All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300006797|Ga0066659_11200194All Organisms → cellular organisms → Bacteria → Acidobacteria634Open in IMG/M
3300006800|Ga0066660_10033448All Organisms → cellular organisms → Bacteria → Acidobacteria3189Open in IMG/M
3300006954|Ga0079219_10811445All Organisms → cellular organisms → Bacteria → Acidobacteria737Open in IMG/M
3300007255|Ga0099791_10007815All Organisms → cellular organisms → Bacteria4426Open in IMG/M
3300007265|Ga0099794_10484702Not Available650Open in IMG/M
3300009088|Ga0099830_10429348All Organisms → cellular organisms → Bacteria1071Open in IMG/M
3300009137|Ga0066709_100577014All Organisms → cellular organisms → Bacteria → Acidobacteria1598Open in IMG/M
3300009137|Ga0066709_101388199All Organisms → cellular organisms → Bacteria → Acidobacteria1023Open in IMG/M
3300009137|Ga0066709_102889065All Organisms → cellular organisms → Bacteria → Acidobacteria634Open in IMG/M
3300009137|Ga0066709_103734641All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300010048|Ga0126373_13010857All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium525Open in IMG/M
3300010159|Ga0099796_10239989All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300010303|Ga0134082_10008611All Organisms → cellular organisms → Bacteria → Acidobacteria3651Open in IMG/M
3300010333|Ga0134080_10494590All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300010335|Ga0134063_10214867All Organisms → cellular organisms → Bacteria → Acidobacteria908Open in IMG/M
3300010336|Ga0134071_10171015All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300010358|Ga0126370_10624412All Organisms → cellular organisms → Bacteria → Acidobacteria934Open in IMG/M
3300010358|Ga0126370_10669634All Organisms → cellular organisms → Bacteria → Acidobacteria907Open in IMG/M
3300010361|Ga0126378_11675032All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300010366|Ga0126379_12795685All Organisms → cellular organisms → Bacteria → Acidobacteria584Open in IMG/M
3300011269|Ga0137392_10310341All Organisms → cellular organisms → Bacteria → Acidobacteria1304Open in IMG/M
3300011270|Ga0137391_10716037All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300011270|Ga0137391_11561827All Organisms → cellular organisms → Bacteria → Acidobacteria504Open in IMG/M
3300012096|Ga0137389_10296547All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1368Open in IMG/M
3300012189|Ga0137388_10273050All Organisms → cellular organisms → Bacteria → Acidobacteria1544Open in IMG/M
3300012189|Ga0137388_10739529All Organisms → cellular organisms → Bacteria → Acidobacteria913Open in IMG/M
3300012189|Ga0137388_11824342All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300012202|Ga0137363_11415939All Organisms → cellular organisms → Bacteria → Acidobacteria585Open in IMG/M
3300012203|Ga0137399_10939528All Organisms → cellular organisms → Bacteria → Acidobacteria728Open in IMG/M
3300012203|Ga0137399_11264259All Organisms → cellular organisms → Bacteria → Acidobacteria621Open in IMG/M
3300012207|Ga0137381_10034601All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4098Open in IMG/M
3300012351|Ga0137386_10995132All Organisms → cellular organisms → Bacteria → Acidobacteria597Open in IMG/M
3300012357|Ga0137384_11591721All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300012582|Ga0137358_10434215All Organisms → cellular organisms → Bacteria → Acidobacteria887Open in IMG/M
3300012683|Ga0137398_10696283All Organisms → cellular organisms → Bacteria → Acidobacteria706Open in IMG/M
3300012685|Ga0137397_10740376All Organisms → cellular organisms → Bacteria → Acidobacteria730Open in IMG/M
3300012922|Ga0137394_10400604All Organisms → cellular organisms → Bacteria → Acidobacteria1170Open in IMG/M
3300012922|Ga0137394_11283095All Organisms → cellular organisms → Bacteria → Acidobacteria595Open in IMG/M
3300012922|Ga0137394_11382774All Organisms → cellular organisms → Bacteria → Acidobacteria565Open in IMG/M
3300012924|Ga0137413_11527337All Organisms → cellular organisms → Bacteria → Acidobacteria543Open in IMG/M
3300012924|Ga0137413_11635774All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300012925|Ga0137419_11844898All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300012930|Ga0137407_10566783All Organisms → cellular organisms → Bacteria1064Open in IMG/M
3300012930|Ga0137407_10985277All Organisms → cellular organisms → Bacteria → Acidobacteria798Open in IMG/M
3300012930|Ga0137407_11903082All Organisms → cellular organisms → Bacteria → Acidobacteria567Open in IMG/M
3300012944|Ga0137410_11488080All Organisms → cellular organisms → Bacteria → Acidobacteria590Open in IMG/M
3300012971|Ga0126369_13585502All Organisms → cellular organisms → Bacteria → Acidobacteria509Open in IMG/M
3300012976|Ga0134076_10196717All Organisms → cellular organisms → Bacteria → Acidobacteria844Open in IMG/M
3300012977|Ga0134087_10157681All Organisms → cellular organisms → Bacteria → Acidobacteria992Open in IMG/M
3300014157|Ga0134078_10031662All Organisms → cellular organisms → Bacteria → Acidobacteria1741Open in IMG/M
3300014201|Ga0181537_10280212All Organisms → cellular organisms → Bacteria1145Open in IMG/M
3300015051|Ga0137414_1157477All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1358Open in IMG/M
3300015054|Ga0137420_1352011All Organisms → cellular organisms → Bacteria2901Open in IMG/M
3300015245|Ga0137409_10137911All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2239Open in IMG/M
3300015264|Ga0137403_11187070All Organisms → cellular organisms → Bacteria609Open in IMG/M
3300017656|Ga0134112_10246915All Organisms → cellular organisms → Bacteria → Acidobacteria707Open in IMG/M
3300018060|Ga0187765_11367929All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300018433|Ga0066667_10620993All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium902Open in IMG/M
3300019786|Ga0182025_1385201All Organisms → cellular organisms → Bacteria2067Open in IMG/M
3300019887|Ga0193729_1012573All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3790Open in IMG/M
3300020170|Ga0179594_10109685All Organisms → cellular organisms → Bacteria → Acidobacteria998Open in IMG/M
3300020199|Ga0179592_10367871All Organisms → cellular organisms → Bacteria → Acidobacteria631Open in IMG/M
3300020579|Ga0210407_10428464All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_101035Open in IMG/M
3300020579|Ga0210407_10431746Not Available1031Open in IMG/M
3300020581|Ga0210399_10003086All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis12954Open in IMG/M
3300020581|Ga0210399_10850337All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10743Open in IMG/M
3300020581|Ga0210399_10924487All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300020581|Ga0210399_11392996All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300020583|Ga0210401_10288689All Organisms → cellular organisms → Bacteria → Acidobacteria1501Open in IMG/M
3300021086|Ga0179596_10330377All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300021088|Ga0210404_10045269All Organisms → cellular organisms → Bacteria2046Open in IMG/M
3300021170|Ga0210400_10671890All Organisms → cellular organisms → Bacteria → Acidobacteria852Open in IMG/M
3300021171|Ga0210405_10112384All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2150Open in IMG/M
3300021171|Ga0210405_10254963All Organisms → cellular organisms → Bacteria → Acidobacteria1388Open in IMG/M
3300021180|Ga0210396_10669516All Organisms → cellular organisms → Bacteria → Acidobacteria898Open in IMG/M
3300021402|Ga0210385_11197721All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae583Open in IMG/M
3300021404|Ga0210389_10955723All Organisms → cellular organisms → Bacteria → Acidobacteria666Open in IMG/M
3300021405|Ga0210387_10362031All Organisms → cellular organisms → Bacteria → Acidobacteria1282Open in IMG/M
3300021406|Ga0210386_11282972All Organisms → cellular organisms → Bacteria → Acidobacteria617Open in IMG/M
3300021432|Ga0210384_11748118All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300021475|Ga0210392_10081839All Organisms → cellular organisms → Bacteria → Acidobacteria2080Open in IMG/M
3300021478|Ga0210402_11975905All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300021479|Ga0210410_10337705All Organisms → cellular organisms → Bacteria → Acidobacteria1351Open in IMG/M
3300021559|Ga0210409_10906610All Organisms → cellular organisms → Bacteria → Acidobacteria755Open in IMG/M
3300022724|Ga0242665_10102618All Organisms → cellular organisms → Bacteria → Acidobacteria850Open in IMG/M
3300024330|Ga0137417_1257584All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4512Open in IMG/M
3300025916|Ga0207663_10708198All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300026277|Ga0209350_1154257All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300026530|Ga0209807_1173956All Organisms → cellular organisms → Bacteria → Acidobacteria795Open in IMG/M
3300026548|Ga0209161_10008762All Organisms → cellular organisms → Bacteria7742Open in IMG/M
3300026552|Ga0209577_10221303All Organisms → cellular organisms → Bacteria → Acidobacteria1442Open in IMG/M
3300026555|Ga0179593_1212889All Organisms → cellular organisms → Bacteria2365Open in IMG/M
3300027480|Ga0208993_1049919All Organisms → cellular organisms → Bacteria754Open in IMG/M
3300027576|Ga0209003_1069755All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300027583|Ga0209527_1100237All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300027643|Ga0209076_1009111All Organisms → cellular organisms → Bacteria → Acidobacteria2504Open in IMG/M
3300027643|Ga0209076_1035042All Organisms → cellular organisms → Bacteria → Acidobacteria1405Open in IMG/M
3300027655|Ga0209388_1078045All Organisms → cellular organisms → Bacteria → Acidobacteria954Open in IMG/M
3300027667|Ga0209009_1014283All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1897Open in IMG/M
3300027729|Ga0209248_10182768All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300027737|Ga0209038_10096449All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300027846|Ga0209180_10644301All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300027846|Ga0209180_10656738All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10574Open in IMG/M
3300027862|Ga0209701_10059066All Organisms → cellular organisms → Bacteria2446Open in IMG/M
3300027862|Ga0209701_10594454All Organisms → cellular organisms → Bacteria588Open in IMG/M
3300027875|Ga0209283_10110853All Organisms → cellular organisms → Bacteria → Acidobacteria1801Open in IMG/M
3300027882|Ga0209590_10047165All Organisms → cellular organisms → Bacteria2380Open in IMG/M
3300027908|Ga0209006_11165656All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300027965|Ga0209062_1006716All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis10337Open in IMG/M
3300027986|Ga0209168_10251843All Organisms → cellular organisms → Bacteria874Open in IMG/M
3300028536|Ga0137415_10184542All Organisms → cellular organisms → Bacteria → Acidobacteria1910Open in IMG/M
3300028773|Ga0302234_10293755All Organisms → cellular organisms → Bacteria → Acidobacteria697Open in IMG/M
3300028906|Ga0308309_10009973All Organisms → cellular organisms → Bacteria5900Open in IMG/M
3300030906|Ga0302314_10597526All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300031720|Ga0307469_10889137All Organisms → cellular organisms → Bacteria → Acidobacteria824Open in IMG/M
3300031753|Ga0307477_10531206All Organisms → cellular organisms → Bacteria797Open in IMG/M
3300031753|Ga0307477_10676081All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_20CM_2_60_10692Open in IMG/M
3300031754|Ga0307475_10527370All Organisms → cellular organisms → Bacteria948Open in IMG/M
3300031754|Ga0307475_10598322All Organisms → cellular organisms → Bacteria → Acidobacteria883Open in IMG/M
3300031771|Ga0318546_10265140All Organisms → cellular organisms → Bacteria → Acidobacteria1184Open in IMG/M
3300031823|Ga0307478_10211335All Organisms → cellular organisms → Bacteria → Acidobacteria1564Open in IMG/M
3300031962|Ga0307479_10191477All Organisms → cellular organisms → Bacteria2013Open in IMG/M
3300031962|Ga0307479_10880530All Organisms → cellular organisms → Bacteria → Acidobacteria868Open in IMG/M
3300031981|Ga0318531_10314306All Organisms → cellular organisms → Bacteria708Open in IMG/M
3300032044|Ga0318558_10666864All Organisms → cellular organisms → Bacteria520Open in IMG/M
3300032180|Ga0307471_102277133All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium683Open in IMG/M
3300032180|Ga0307471_103707414All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium540Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil32.47%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil16.23%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.44%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.49%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil5.19%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil4.55%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil3.90%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.90%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.90%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.25%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.60%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.30%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.65%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.65%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.65%
Grass SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil0.65%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.65%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.65%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.65%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.65%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.65%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.65%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2170459012Grass soil microbial communities from Rothamsted Park, UK - July 2010 direct MP BIO1O1 lysis Rhizosphere grassEnvironmentalOpen in IMG/M
3300001527Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-5cm-13A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300003223Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2EnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004635Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300005172Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005450Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005556Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005610Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010333Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300012977Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014201Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaGEnvironmentalOpen in IMG/M
3300015051Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300017656Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300019786Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300019887Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026277Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300026552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)EnvironmentalOpen in IMG/M
3300026555Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300027480Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027576Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027583Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027643Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)EnvironmentalOpen in IMG/M
3300027655Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027729Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027737Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027908Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)EnvironmentalOpen in IMG/M
3300027965Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028773Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300030906Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300031981Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25EnvironmentalOpen in IMG/M
3300032044Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
N56_050711002170459012Grass SoilLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAELGKTSLS
A3513AW1_160867523300001527PermafrostARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKLALS*
JGI25617J43924_1016146313300002914Grasslands SoilVNGEWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
JGI26343J46809_100057413300003223Bog Forest SoilLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKASLS*
Ga0062389_10149623213300004092Bog Forest SoilSYLVNGQWVELSDSLLKARAKIEPGHKISLRYYGKNGLVEMIYERRVAELGKTALG*
Ga0062389_10341062923300004092Bog Forest SoilSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVVDMGKTALS*
Ga0062388_10262467123300004635Bog Forest SoilLVNGQWVELSDSLLKARAKIEPGHKISLRYYGKNGLVEMIYERRVAELGKTALS*
Ga0066683_1007185013300005172SoilLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0066673_1001484413300005175SoilSDSLIKTRAKIAPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0070714_10177517023300005435Agricultural SoilELSDSVVRSRAKLEPGHKIVFRYRGKHGWCEIVYKRRVAELGKTSLG*
Ga0066682_1089150513300005450SoilNGEWVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0070741_1081384623300005529Surface SoilVKSRARIEPGHKIIFKYHGKSGVVEVIYERRLAVLGKTALS*
Ga0070733_1012441623300005541Surface SoilVDGEWVTLSDSLTKARAKIVPGHKIVLRFYGKKGWSEMTYERRVAEMGKTSLG*
Ga0066707_1056705313300005556SoilGEWVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0066705_1025617323300005569SoilIAPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0066691_1054925013300005586SoilWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0070762_1112382613300005602SoilIKAKARIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0070763_1080888533300005610SoilLVKARAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTSLS*
Ga0070766_1017938223300005921SoilAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKTSLG*
Ga0080026_1023397323300005952Permafrost SoilMSDAMIKARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKTLLS*
Ga0066696_1046857633300006032SoilKTRAKIAPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0066652_10114112733300006046SoilEPGHKIVLRYHGKHGFVEMTYERRVVELGKTALS*
Ga0075018_1007259333300006172WatershedsLSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0070765_10140799313300006176SoilGQWVTLSDSLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKTSLS*
Ga0070765_10216089813300006176SoilRSRAKIEPGHKIVFRYRGKHGWCEMVYERRVAELGKTSLI*
Ga0066665_1130023613300006796SoilIKAKARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0066659_1120019423300006797SoilRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0066660_1003344823300006800SoilELSDSLIKTRAKIQPGHKILLRYHGKHGLVEVIYERRVAELGKTALS*
Ga0079219_1081144523300006954Agricultural SoilRSRAKIEPGHKIVFRYRGKHGWCEMTYERRVAELGKTSLS*
Ga0099791_1000781513300007255Vadose Zone SoilRAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS*
Ga0099794_1048470223300007265Vadose Zone SoilSRAKIAPGHKIVFRYYGKHGFVEMVYERRLAELGKTSLS*
Ga0099830_1042934833300009088Vadose Zone SoilIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0066709_10057701443300009137Grasslands SoilWVELSDSLIKTRAKIEPGHKIVLRYHGKHGFVEMTYERRVVELGKTALS*
Ga0066709_10138819923300009137Grasslands SoilAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0066709_10288906513300009137Grasslands SoilKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0066709_10373464113300009137Grasslands SoilRAKIKRGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0099792_1086223213300009143Vadose Zone SoilEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS*
Ga0126373_1301085713300010048Tropical Forest SoilSRAKIEPGHRIVFRYHGKHGWCEMVYERRLAELGKTNLG*
Ga0099796_1023998933300010159Vadose Zone SoilVELSESAVRSRAKIEPGHKIVFRYRGKHGWCEMTYERRVADLG
Ga0134082_1000861123300010303Grasslands SoilELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0134080_1049459013300010333Grasslands SoilIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0134063_1021486723300010335Grasslands SoilDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0134071_1017101523300010336Grasslands SoilVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0126370_1062441233300010358Tropical Forest SoilIKTRAKIEPGHKIVLRYHGKHGFVEMTYERRVVELGKTALS*
Ga0126370_1066963433300010358Tropical Forest SoilAKIEPGHKIVLRYFGKHGFVEMTYERRVVELGKTALS*
Ga0126378_1167503213300010361Tropical Forest SoilGQWVELSDSLVKTRAKIEPGHKIVLRYFGRHGFVEMTYERRVAELGKTALS*
Ga0126379_1279568523300010366Tropical Forest SoilAKIQPGHKILLRYHGKHGLVEVIYERRVAELGKTALS*
Ga0137392_1031034113300011269Vadose Zone SoilKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTKLS*
Ga0137391_1071603713300011270Vadose Zone SoilLSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0137391_1156182713300011270Vadose Zone SoilTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0137389_1029654733300012096Vadose Zone SoilSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0137388_1027305033300012189Vadose Zone SoilSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTKLS*
Ga0137388_1073952913300012189Vadose Zone SoilIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137388_1182434223300012189Vadose Zone SoilEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTKLS*
Ga0137363_1141593913300012202Vadose Zone SoilSYLVNGEWVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0137399_1093952833300012203Vadose Zone SoilELSDSLIKAKAKIEPGHKIVLRYYGKHGLVEMIYERRVAELGKTALS*
Ga0137399_1126425923300012203Vadose Zone SoilARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137381_1003460113300012207Vadose Zone SoilIEPGYKIVLRYYGKHGLVEMTYERRVAETGKTALS*
Ga0137386_1099513213300012351Vadose Zone SoilRAKIEPGHKIVLCYYGKHGLVEMTYERRVAEMGKTALS*
Ga0137384_1159172113300012357Vadose Zone SoilSLIKTRAKIEPGYKIVLRYYGKHGLVEMTYERRVAETGKTALS*
Ga0137358_1043421523300012582Vadose Zone SoilSDSLIKAKAKIEPGHKIVLRYYGKHGLVEMIYERRVAELGKTALS*
Ga0137398_1069628313300012683Vadose Zone SoilKSRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0137397_1074037623300012685Vadose Zone SoilLSDSLIKAKARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137394_1040060433300012922Vadose Zone SoilKARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137394_1128309523300012922Vadose Zone SoilEPGHKIVLRYYGKHGLVEMTYVRQVAELGKTALS*
Ga0137394_1138277423300012922Vadose Zone SoilDSLIKAKARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137413_1152733723300012924Vadose Zone SoilAKIEPGHKIVFRYRGKHGWCEMTYERRVADLGKTSLS*
Ga0137413_1163577413300012924Vadose Zone SoilKMEPGHKIVFRYRGKHGWCEMVYERRVAELGKTSLG*
Ga0137419_1184489813300012925Vadose Zone SoilLSDSAVRSRAKIEPGHKIVFRYRGKHGWCEMTYERRVAELGKTSLS*
Ga0137407_1056678313300012930Vadose Zone SoilAKIEPGHKIVFRYRGRHGWCEMVYERRVAELGKTSLI*
Ga0137407_1098527723300012930Vadose Zone SoilQWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS*
Ga0137407_1190308213300012930Vadose Zone SoilELSDSLIKAKARIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS*
Ga0137410_1148808013300012944Vadose Zone SoilKAKAKIEPGHKIVLRYYGKHGLVEMIYERRVAELGKTALS*
Ga0126369_1358550233300012971Tropical Forest SoilEPGHKIVLRYYGKRGLVEVTYERRVAELGKTALG*
Ga0134076_1019671713300012976Grasslands SoilKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS*
Ga0134087_1015768113300012977Grasslands SoilIEPGHKIVLPYYGKHGLVEMTYERRVAEMGKTALS*
Ga0134078_1003166213300014157Grasslands SoilRAKIQPGHKILLRYHGKHRLVEVIYERRVAELGKTALS*
Ga0181537_1028021233300014201BogLKARAKLEPGHRIVLHYFGDKGLVEMVYERRVAELGKTSLG*
Ga0137414_115747723300015051Vadose Zone SoilVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0137420_135201153300015054Vadose Zone SoilMGSGGASDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS*
Ga0137409_1013791113300015245Vadose Zone SoilAKAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKRALS*
Ga0137403_1118707023300015264Vadose Zone SoilMEPGHKIVFRYRGKHGWCEMVYERRVAELGKTSLG*
Ga0134112_1024691513300017656Grasslands SoilIRGWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0187765_1136792923300018060Tropical PeatlandAKIAPGHKIVLRYYGKNGLVEMVYERRIAELGKTSLS
Ga0066667_1062099343300018433Grasslands SoilIKTRAKIEPGHKIVLRYHGKHGFVEMTYERRVVELGKTALS
Ga0182025_138520133300019786PermafrostMVTGGYVEMSDAFIRARGKIEPGHKIVLRYFGKHGLVEMTFERRVAELGKTWLG
Ga0193729_101257353300019887SoilSDSLIRARAKIEPGHKIVLRYYGKHGLVEMTFERRVAELGKISLS
Ga0179594_1010968523300020170Vadose Zone SoilWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0179592_1036787123300020199Vadose Zone SoilLVKTRAKIEPGHKIVLRYYGKHGLVEVTYERRVAEMGKTALS
Ga0210407_1042846413300020579SoilVRSRAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS
Ga0210407_1043174633300020579SoilARARIEPGHKIALRYYGKNGLVEIIYERRVAELGKTSLS
Ga0210399_1000308693300020581SoilRAKIVPGHKIVLRYYGRHGWAEMTYERRVAEMGKTSLG
Ga0210399_1085033723300020581SoilAKIEPGHRIVFRYHGKHGWCEMTYERRLAELGKTSLS
Ga0210399_1092448713300020581SoilTLSDSLTKARAKIAPGHKIVLRYYGRHGWAEMTYERRVAEMGRTSLG
Ga0210399_1139299613300020581SoilKIEPGHKIVLRYYGKHGLVEMTFERRVVDMGKTALS
Ga0210401_1028868923300020583SoilVTLSDSLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKTSLG
Ga0179596_1033037713300021086Vadose Zone SoilDSVVRSRAKIEPGHKIVFRYRGKHGWCEMVYERRVADLGKTSLG
Ga0210404_1004526933300021088SoilSRAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS
Ga0210400_1067189023300021170SoilMSDALIRARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKLALT
Ga0210405_1011238433300021171SoilSDSLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKASLS
Ga0210405_1025496323300021171SoilEWVEMSDSLIRARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKLALT
Ga0210396_1066951613300021180SoilGDWVEMSDALIRARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKLALT
Ga0210385_1119772113300021402SoilLSDSLTKARAKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKASLG
Ga0210389_1095572333300021404SoilELSDTLQKTRAKIEPGHKISLRYFGKNGLVEMIYERRVADLGKTSLG
Ga0210387_1036203113300021405SoilDSLTKARAKIVPGHKIVLRYYGRHGWAEMTYERRVAEMGKTSLG
Ga0210386_1128297223300021406SoilKIVPGHKIVLRYYGKHGWAEMTYERRVAEMGKASLS
Ga0210384_1174811823300021432SoilAKIEPGHKIVLRYYGKHGLVEMTFERRVTELGKTALS
Ga0210392_1008183933300021475SoilWVELSDTLQKTRAKIEPGHKISLRYFGKNGLVEMIYERRVADLGKTSLG
Ga0210402_1197590513300021478SoilKTRAKIEPGHKIVLRYYGKTGLVEMIYERRVAELGKTSLG
Ga0210410_1033770513300021479SoilKIVPGHKIVLRYYGRHGWAEMTYERRVAEMGKTSLG
Ga0210409_1090661023300021559SoilEMSDALIRARAKIEPGHKIVLRYYGKRGLVEMTFERRVAELGKLALT
Ga0242665_1010261823300022724SoilLSDSLIKARAKIEPGHKIVLRCYGKHGLVEMVYERRVAELGKTALI
Ga0137417_125758443300024330Vadose Zone SoilVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALI
Ga0207663_1070819823300025916Corn, Switchgrass And Miscanthus RhizosphereDSVVRSRAKLEPGHKIVFRYRGKHGWCEIVYKRRVAELGKTSLG
Ga0209350_115425713300026277Grasslands SoilEWVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS
Ga0209807_117395613300026530SoilGQWVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209161_1000876213300026548SoilTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209577_1022130313300026552SoilELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0179593_121288963300026555Vadose Zone SoilVELSDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTSLS
Ga0208993_104991913300027480Forest SoilTYLVTGQWVEMSDALVKARAKIEPGHKIVLRYYGKHGLVEMTFERRVAELGKLALS
Ga0209003_106975523300027576Forest SoilVNGEWVELSDTLQKTRAKIEPGHKISLRYFGKNGLVEMIYERRVADLGKTSLG
Ga0209527_110023723300027583Forest SoilDSVVKSRAKIAAGHKIVFRYHGKHGWCEMIFERRLAELGKTSLS
Ga0209076_100911133300027643Vadose Zone SoilDSLIKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALT
Ga0209076_103504223300027643Vadose Zone SoilRSRAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS
Ga0209388_107804523300027655Vadose Zone SoilSDSLIKAKAKIEPGHKIVLRYYGKHGLVEMIYERRVAELGKTALS
Ga0209009_101428313300027667Forest SoilTYLVTGEWVEMSDSLIRARAKIEPGHKIVLRYYGKHGLVEMTFERRVAELGKLALS
Ga0209248_1018276833300027729Bog Forest SoilELSDSLLKARAKIEPGHKIVLRYVGKNGVVEMVYERRVAELGTTALS
Ga0209038_1009644933300027737Bog Forest SoilLLKARARIAPGHKIVLRYYGKNGYVEMIYERRVAELGKTALS
Ga0209180_1064430113300027846Vadose Zone SoilIKARAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209180_1065673813300027846Vadose Zone SoilLSDSSVRSRAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS
Ga0209701_1005906643300027862Vadose Zone SoilARAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209701_1059445413300027862Vadose Zone SoilKTRAKIKPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0209283_1011085313300027875Vadose Zone SoilAKIEPGHKIVFRYHGKHGWCEMIYERRLAELGKTSLS
Ga0209590_1004716513300027882Vadose Zone SoilKIEPGHKIVLRYYGKHGLVEMVYERRVAELGKTALS
Ga0209006_1116565613300027908Forest SoilKARARIEPGHKIALRYYGKNGLVEIIYERRVAELGKTSLS
Ga0209062_100671693300027965Surface SoilIEPGHKMVLRFYGKQGLVEIFYERRRAELGKMSLG
Ga0209168_1025184323300027986Surface SoilVRSRAKIEPGHKIVFRYRGKHGWCEMVYERRVAELGKTSLS
Ga0137415_1018454213300028536Vadose Zone SoilAKAKIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS
Ga0302234_1029375523300028773PalsaSDSLLKARAKIEPGHKISLRYYGKNGLVEMIYERRVADLGKISLG
Ga0308309_1000997313300028906SoilIVPGHKIVLRFYGKKGWSEMTYERRVAEMGKTSLG
Ga0302314_1059752613300030906PalsaLLKARGKIEPGHRIVLHYYGKKGFVEIIYERRVAELGKTALG
Ga0307469_1088913713300031720Hardwood Forest SoilLIKTRAKIEPGHKIVLRYFGKHGLVEMTYVRRVAEMGKTALI
Ga0307477_1053120613300031753Hardwood Forest SoilVELSDSLIKTRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0307477_1067608113300031753Hardwood Forest SoilRSRAKIEPGHKIVFRYHGKHGWCEMTYERRLAELGKTSLS
Ga0307475_1052737013300031754Hardwood Forest SoilKIEPGHKIVFRYRGKHGWCEMVYERRVADLGKTSLS
Ga0307475_1059832213300031754Hardwood Forest SoilAKIEPGHKIVIKYFGKHGLVEMTYERRVVEIGKSSVS
Ga0318546_1026514033300031771SoilLSDSLIKTRAKIQPGHKILLRYHGKRGLVEVIYERRVAELGKTALS
Ga0307478_1021133513300031823Hardwood Forest SoilELSDSAVRSRAKIEPGHKIVFRYRGKHGWCEMTYERRVAELGKTSLS
Ga0307479_1019147733300031962Hardwood Forest SoilRAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0307479_1088053013300031962Hardwood Forest SoilAKIEPGHKIVLRYYGKHGLVEMTYERRVAEMGKTALS
Ga0318531_1031430613300031981SoilWVELSDSLLKTRAKIEPGHKIVLHYFGKHGLVEMVYERRVAELGKTSLG
Ga0318558_1066686423300032044SoilWVELSDSLIKTRAKIQPGHKILLRYHGKRGLVEVIYERRVAELGKTALS
Ga0307471_10227713313300032180Hardwood Forest SoilIEPGHKIVLRYYGKHGLVEMTYVRRVAELGKTALS
Ga0307471_10370741423300032180Hardwood Forest SoilAKAKIEPGHKIVLRYYGKHGLVEMTYERRVAELGKTALS


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