Metagenome / Metatranscriptome Family F044586

Basic Information
Family ID	F044586
Family Type	Metagenome / Metatranscriptome
Number of Sequences	154
Average Sequence Length	42 residues
Representative Sequence	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARQHKLVVWN
Number of Associated Samples	129
Number of Associated Scaffolds	154

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.40 %
% of genes near scaffold ends (potentially truncated)	98.70 %
% of genes from short scaffolds (< 2000 bps)	95.45 %
Associated GOLD sequencing projects	125
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Most Common Taxonomy
Group	Bacteria (97.403 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (12.338 % of family members)
Environment Ontology (ENVO)	Unclassified (24.675 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (37.662 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 54.29% β-sheet: 0.00% Coil/Unstructured: 45.71%
Feature Viewer

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Pfam ID	Name	% Frequency in 154 Family Scaffolds
PF00528	BPD_transp_1	49.35
PF13416	SBP_bac_8	12.34
PF01547	SBP_bac_1	1.30
PF13374	TPR_10	0.65
PF07995	GSDH	0.65
PF00581	Rhodanese	0.65
PF07963	N_methyl	0.65
PF10518	TAT_signal	0.65
PF07228	SpoIIE	0.65
PF12002	MgsA_C	0.65
PF13424	TPR_12	0.65
PF07969	Amidohydro_3	0.65

COG ID	Name	Functional Category	% Frequency in 154 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.40 %
Unclassified	root	N/A	2.60 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.40 %
Unclassified	root	N/A	2.60 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.40 %
Unclassified	root	N/A	2.60 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	30.52 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	5.19 %
Unclassified	root	N/A	2.60 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.65 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	30.52 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3.25 %
Unclassified	root	N/A	2.60 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.65 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.65 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	30.52 %
Unclassified	root	N/A	2.60 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.30 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.95 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.65 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.65 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	30.52 %
Unclassified	root	N/A	2.60 %
Roseobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae	1.30 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.65 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.65 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.65 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	30.52 %
Unclassified	root	N/A	2.60 %
Marivita	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marivita	1.30 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.65 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.65 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.65 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	30.52 %
Unclassified	root	N/A	2.60 %
Marivita cryptomonadis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marivita → Marivita cryptomonadis	1.30 %
Kaistia adipata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia adipata	0.65 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.65 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	0.65 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.65 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100149568	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300004281\|Ga0066397_10098325	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	610	Open in IMG/M
3300005093\|Ga0062594_100500458	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300005172\|Ga0066683_10423666	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	820	Open in IMG/M
3300005294\|Ga0065705_10232086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia adipata	1268	Open in IMG/M
3300005295\|Ga0065707_10574639	All Organisms → cellular organisms → Bacteria	706	Open in IMG/M
3300005295\|Ga0065707_10732171	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300005332\|Ga0066388_100281081	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	2307	Open in IMG/M
3300005332\|Ga0066388_100497004	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	1856	Open in IMG/M
3300005438\|Ga0070701_10609095	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	724	Open in IMG/M
3300005440\|Ga0070705_100802012	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	749	Open in IMG/M
3300005468\|Ga0070707_100153048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2246	Open in IMG/M
3300005468\|Ga0070707_102077536	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	536	Open in IMG/M
3300005544\|Ga0070686_101460531	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300005555\|Ga0066692_10365650	All Organisms → cellular organisms → Bacteria	915	Open in IMG/M
3300005560\|Ga0066670_10495092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	751	Open in IMG/M
3300005576\|Ga0066708_10758146	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	611	Open in IMG/M
3300005713\|Ga0066905_100913921	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	769	Open in IMG/M
3300005713\|Ga0066905_101687768	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005764\|Ga0066903_101339050	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1340	Open in IMG/M
3300005840\|Ga0068870_10458269	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300005937\|Ga0081455_10640268	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300005981\|Ga0081538_10270272	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	637	Open in IMG/M
3300006034\|Ga0066656_10865603	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	579	Open in IMG/M
3300006194\|Ga0075427_10029508	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300006797\|Ga0066659_10837205	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	764	Open in IMG/M
3300006844\|Ga0075428_100258485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1875	Open in IMG/M
3300006844\|Ga0075428_101025896	All Organisms → cellular organisms → Bacteria	873	Open in IMG/M
3300006845\|Ga0075421_102152487	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300006846\|Ga0075430_101414708	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300006853\|Ga0075420_100496791	Not Available	1054	Open in IMG/M
3300006853\|Ga0075420_100607499	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300006853\|Ga0075420_100965281	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300006854\|Ga0075425_101122225	All Organisms → cellular organisms → Bacteria	895	Open in IMG/M
3300006914\|Ga0075436_101169484	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300006914\|Ga0075436_101340717	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	542	Open in IMG/M
3300009012\|Ga0066710_104825735	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300009038\|Ga0099829_11655447	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300009089\|Ga0099828_11345212	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	631	Open in IMG/M
3300009089\|Ga0099828_11520574	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300009100\|Ga0075418_10907184	All Organisms → cellular organisms → Bacteria	953	Open in IMG/M
3300009100\|Ga0075418_13031178	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	512	Open in IMG/M
3300009137\|Ga0066709_103393229	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300009156\|Ga0111538_11123228	All Organisms → cellular organisms → Bacteria	994	Open in IMG/M
3300009156\|Ga0111538_13771596	All Organisms → cellular organisms → Bacteria	525	Open in IMG/M
3300009168\|Ga0105104_10650594	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300009553\|Ga0105249_12576745	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	581	Open in IMG/M
3300009691\|Ga0114944_1004153	All Organisms → cellular organisms → Bacteria	4494	Open in IMG/M
3300009816\|Ga0105076_1033192	All Organisms → cellular organisms → Bacteria	914	Open in IMG/M
3300009817\|Ga0105062_1075317	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	644	Open in IMG/M
3300009820\|Ga0105085_1122135	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300010043\|Ga0126380_11115978	Not Available	673	Open in IMG/M
3300010145\|Ga0126321_1172428	All Organisms → cellular organisms → Bacteria	949	Open in IMG/M
3300010145\|Ga0126321_1260215	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300010323\|Ga0134086_10407095	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	548	Open in IMG/M
3300010337\|Ga0134062_10783799	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	508	Open in IMG/M
3300010361\|Ga0126378_11191459	All Organisms → cellular organisms → Bacteria	860	Open in IMG/M
3300010362\|Ga0126377_10786422	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300010362\|Ga0126377_11069444	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300010398\|Ga0126383_11290977	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	820	Open in IMG/M
3300010399\|Ga0134127_11010731	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300010400\|Ga0134122_11155969	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	771	Open in IMG/M
3300011333\|Ga0127502_10365613	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012096\|Ga0137389_11020704	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300012189\|Ga0137388_10849679	All Organisms → cellular organisms → Bacteria	845	Open in IMG/M
3300012199\|Ga0137383_10710118	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	734	Open in IMG/M
3300012203\|Ga0137399_10601666	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300012226\|Ga0137447_1065872	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	682	Open in IMG/M
3300012351\|Ga0137386_10758489	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300012353\|Ga0137367_10076821	All Organisms → cellular organisms → Bacteria	2472	Open in IMG/M
3300012353\|Ga0137367_10126115	All Organisms → cellular organisms → Bacteria	1876	Open in IMG/M
3300012356\|Ga0137371_10198713	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300012359\|Ga0137385_11140635	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	640	Open in IMG/M
3300012363\|Ga0137390_11482398	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	620	Open in IMG/M
3300012469\|Ga0150984_109776702	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300012582\|Ga0137358_10748754	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	653	Open in IMG/M
3300012685\|Ga0137397_10827073	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	687	Open in IMG/M
3300012944\|Ga0137410_11476122	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	593	Open in IMG/M
3300012971\|Ga0126369_10316019	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300013306\|Ga0163162_11612112	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	740	Open in IMG/M
3300015241\|Ga0137418_10598138	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	865	Open in IMG/M
3300015372\|Ga0132256_102612646	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300015374\|Ga0132255_101323880	All Organisms → cellular organisms → Bacteria	1087	Open in IMG/M
3300016319\|Ga0182033_11186961	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300017656\|Ga0134112_10059374	All Organisms → cellular organisms → Bacteria	1397	Open in IMG/M
3300018422\|Ga0190265_11147009	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300018469\|Ga0190270_10720927	All Organisms → cellular organisms → Bacteria	992	Open in IMG/M
3300018469\|Ga0190270_11086812	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300018469\|Ga0190270_13186782	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300019232\|Ga0180114_1009735	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300019238\|Ga0180112_1291514	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300019244\|Ga0180111_1325922	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	598	Open in IMG/M
3300019249\|Ga0184648_1254894	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300019257\|Ga0180115_1217081	All Organisms → cellular organisms → Bacteria	744	Open in IMG/M
3300019259\|Ga0184646_1252888	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300019259\|Ga0184646_1474429	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300019279\|Ga0184642_1359922	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	696	Open in IMG/M
3300019458\|Ga0187892_10150584	All Organisms → cellular organisms → Bacteria	1303	Open in IMG/M
3300020063\|Ga0180118_1107837	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300020065\|Ga0180113_1394408	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300020065\|Ga0180113_1439473	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300020080\|Ga0206350_10844404	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300020084\|Ga0194110_10542261	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	750	Open in IMG/M
3300021073\|Ga0210378_10244047	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	681	Open in IMG/M
3300021314\|Ga0210370_1191513	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	567	Open in IMG/M
3300022195\|Ga0222625_1193162	All Organisms → cellular organisms → Bacteria	965	Open in IMG/M
3300025157\|Ga0209399_10179387	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	850	Open in IMG/M
3300025961\|Ga0207712_11231786	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300026326\|Ga0209801_1240198	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	697	Open in IMG/M
3300026328\|Ga0209802_1233342	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	656	Open in IMG/M
3300026333\|Ga0209158_1174575	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	775	Open in IMG/M
3300026536\|Ga0209058_1009520	All Organisms → cellular organisms → Bacteria	7027	Open in IMG/M
3300027577\|Ga0209874_1133338	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300027646\|Ga0209466_1093061	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	609	Open in IMG/M
3300027654\|Ga0209799_1071874	Not Available	778	Open in IMG/M
3300027882\|Ga0209590_10661475	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300027903\|Ga0209488_10676525	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300027909\|Ga0209382_12072842	All Organisms → cellular organisms → Bacteria	543	Open in IMG/M
3300028381\|Ga0268264_12487154	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300028587\|Ga0247828_10169097	All Organisms → cellular organisms → Bacteria	1113	Open in IMG/M
3300028673\|Ga0257175_1021317	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300028878\|Ga0307278_10180327	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300030592\|Ga0247612_1001017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marivita → Marivita cryptomonadis	1863	Open in IMG/M
3300030634\|Ga0247636_10367099	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300030903\|Ga0308206_1003429	All Organisms → cellular organisms → Bacteria	1893	Open in IMG/M
3300030903\|Ga0308206_1087504	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300030903\|Ga0308206_1102876	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300030993\|Ga0308190_1058870	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031092\|Ga0308204_10034345	All Organisms → cellular organisms → Bacteria	1146	Open in IMG/M
3300031094\|Ga0308199_1136778	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300031094\|Ga0308199_1146163	All Organisms → cellular organisms → Bacteria	559	Open in IMG/M
3300031098\|Ga0308191_1002081	All Organisms → cellular organisms → Bacteria	1412	Open in IMG/M
3300031114\|Ga0308187_10143020	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300031114\|Ga0308187_10290553	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
(restricted) 3300031150\|Ga0255311_1059343	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	809	Open in IMG/M
3300031547\|Ga0310887_10040431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Roseobacteraceae → Marivita → Marivita cryptomonadis	2027	Open in IMG/M
3300031561\|Ga0318528_10011634	All Organisms → cellular organisms → Bacteria → Proteobacteria	4014	Open in IMG/M
3300031744\|Ga0306918_11528223	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300031747\|Ga0318502_10332048	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300031820\|Ga0307473_10145725	All Organisms → cellular organisms → Bacteria	1339	Open in IMG/M
3300031947\|Ga0310909_11167314	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300032013\|Ga0310906_10589780	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300032180\|Ga0307471_101405590	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300032180\|Ga0307471_101545077	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300032180\|Ga0307471_101638108	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	799	Open in IMG/M
3300032180\|Ga0307471_102937798	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300034115\|Ga0364945_0151577	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	696	Open in IMG/M
3300034164\|Ga0364940_0097665	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	825	Open in IMG/M
3300034659\|Ga0314780_213558	Not Available	510	Open in IMG/M
3300034661\|Ga0314782_149285	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300034663\|Ga0314784_081175	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300034669\|Ga0314794_115498	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	590	Open in IMG/M
3300034672\|Ga0314797_060698	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300034674\|Ga0314799_046553	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	83.12%
Host-Associated	Host-Associated	16.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	68.83%
Plants	Host-Associated → Plants	16.88%
Aquatic	Environmental → Aquatic	14.29%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.99%
Freshwater	Environmental → Aquatic → Freshwater	11.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.25%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.30%
Floodplain	Environmental → Terrestrial → Floodplain	1.30%
Marine	Environmental → Aquatic → Marine	0.65%
Sediment	Environmental → Aquatic → Sediment	0.65%
Cave	Environmental → Terrestrial → Cave	0.65%
Roots	Host-Associated → Plants → Roots	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.69%
Sediment	Environmental → Aquatic → Freshwater → Sediment	9.09%
Loam	Environmental → Terrestrial → Soil → Loam	9.09%
Sand	Environmental → Terrestrial → Soil → Sand	3.25%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.60%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.95%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.30%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.30%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.30%
Lake	Environmental → Aquatic → Freshwater → Lake	0.65%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.65%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.69%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	9.09%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.44%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.79%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.25%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	3.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.60%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.95%
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	1.30%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.30%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.30%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	0.65%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	0.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.65%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.34%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.74%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	8.44%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.49%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.84%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.90%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.60%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.60%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.95%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.95%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.95%
Thermal Springs	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Springs	1.30%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.30%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.30%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.30%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.30%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	0.65%
Freshwater Lake	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake	0.65%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	0.65%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.65%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.65%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.65%
Sandy Soil	Environmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil	0.65%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009691	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP2	Environmental	Open in IMG/M
3300009816	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009820	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012226	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019232	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT530_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019238	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT466_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019244	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT293_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019249	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019257	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT660_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019259	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019279	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300020063	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT730_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020065	Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLT499_16_1Ra (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020080	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020084	Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015032 Kigoma Deep Cast 1200m	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021314	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Washington, United States ? S.671 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025157	Hot spring microbial communities from Beatty, Nevada to study Microbial Dark Matter (Phase II) - OV2 TP3 (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026328	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028673	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-B	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030592	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Ab1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030634	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb1 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030993	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031098	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_186 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031114	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_182 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031150 (restricted)	Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300034115	Sediment microbial communities from East River floodplain, Colorado, United States - 29_s17	Environmental	Open in IMG/M
3300034164	Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034661	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034663	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034669	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034672	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034674	Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R3 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044586

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1001495681	3300000559	Soil	MLTRRDMLQQAGRTAAVLATTAPWWLVRRAHAARQNKLVVWNT
Ga0066397_100983252	3300004281	Tropical Forest Soil	MLTRRDVLQRAGTAAALATTASWWLVRRAHAARQHKLIVWVPT
Ga0062594_1005004582	3300005093	Soil	MIGRHNMLTRRELLQQTGKATTVLSTTAPWWLVRRAHAARQ
Ga0066683_104236662	3300005172	Soil	MPTRREILKTAGKTAAVLTTTAPWWLSRTAHAARQAKLVVWNPAAL
Ga0065705_102320861	3300005294	Switchgrass Rhizosphere	MQTRREILKTAGKTAVLTTTAPWWLVRRAHAARAAKLVVWNPAALAPQV
Ga0065707_105746392	3300005295	Switchgrass Rhizosphere	MLTRRDILQQAGRTAVVVATTAPWWLVRRAHAARETKLVVWN
Ga0065707_107321712	3300005295	Switchgrass Rhizosphere	MLTRRDLLRQTGTATALAMTASWWLVHQAHAARDKKLVVWVPTALAPQVD
Ga0066388_1002810811	3300005332	Tropical Forest Soil	MWTRRKILRQAGTAVVLATTAPWWLVRRAHAARQTKLVVWNTTALAPQVDKI
Ga0066388_1004970042	3300005332	Tropical Forest Soil	MWTRRKILRQAGPAVVLATTAPWWLVRRAHAARQTKLVVWNTTALAPQVDKI
Ga0070701_106090952	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRRELLQQTGKATTVLSTTAPWWLVRRAHAARQAKLVVWNPAALAPQVD
Ga0070705_1008020122	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRREILKRAGAATVVTTTAPWWLVRKAHAARTAKLVVWNPAALAPQVD
Ga0070707_1001530483	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRRDILQQAGRTAAILVTTAPWWLVRRAHAARQNKLVVWNTTALAPQVDK
Ga0070707_1020775362	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRRSLLKTAGTTATILTTTSPWWLVRRAHAARQAKLVVWNPA
Ga0070686_1014605312	3300005544	Switchgrass Rhizosphere	MLTRRDVLRQAGTATALATTASWWLVCRAHAARDKKLTVWVPT
Ga0066692_103656502	3300005555	Soil	MPTRREILKQAGKTATVLTTTAPWWLVRRAHAARQAKLV
Ga0066670_104950922	3300005560	Soil	MPTRREILKTAGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPA
Ga0066708_107581461	3300005576	Soil	MPTRREILKTAGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPAALAPQ
Ga0066905_1009139211	3300005713	Tropical Forest Soil	MPTRRDILKTAGKSATVLTTTAPWWRVRRAHAARQAKLVVWNPAALAPQVDK
Ga0066905_1016877681	3300005713	Tropical Forest Soil	MWTRRKVLRQAGPAVVLATAVPWWLVRRAHAARQTKLVVWN
Ga0066903_1013390502	3300005764	Tropical Forest Soil	MWTRRKILRQAGPAVVLATTAPWWLVRRAHAARQTKLVVWNTTAL
Ga0068870_104582693	3300005840	Miscanthus Rhizosphere	MLTRRDVLRQSGRAVTIVATTAPWWLVRRAHAARQ
Ga0081455_106402681	3300005937	Tabebuia Heterophylla Rhizosphere	MLTRRDILRQAGTTAAVLATTAPWWLVRRAHAARQHKLVVWNPAAL
Ga0081538_102702722	3300005981	Tabebuia Heterophylla Rhizosphere	MLTRRDVLKQAGVAAALATAPWWLVRRAHAARREKLVVWHGVALAP
Ga0066656_108656031	3300006034	Soil	MLTRRAILQQAGKTATVLTAATPWWLVRRAHAARQAKLVVWNPA
Ga0075427_100295081	3300006194	Populus Rhizosphere	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARQHKLVVWNTTALAPQVDK
Ga0066659_108372052	3300006797	Soil	MLTRRDVLQRAGTATALATTASWWLVRRAHAARDKKLV
Ga0075428_1002584851	3300006844	Populus Rhizosphere	MLTRRDILQQAGRAATILATTAPWWLVRRAHAARQTKLAAWVPAALAPQ
Ga0075428_1010258961	3300006844	Populus Rhizosphere	MLTRRSVLQRAGTATALATTASWWLVRRAHAARDKKLVVWVPTALAPQV
Ga0075421_1021524871	3300006845	Populus Rhizosphere	MPTRREVLRQVGTMAVLGTTAPWWLVRRAHAARREKLIVW
Ga0075430_1014147082	3300006846	Populus Rhizosphere	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARQHKLVVWNTTALAPQVD
Ga0075420_1004967914	3300006853	Populus Rhizosphere	MVTRRDVLQRAGAATALATTAAWWLVRRAHAARRAKLV
Ga0075420_1006074992	3300006853	Populus Rhizosphere	MLTRRDALRQVGTAAALATMAPWWLVRRAHAQRAEKLIVWQPVAL
Ga0075420_1009652811	3300006853	Populus Rhizosphere	MLTRRDILQQAGRTAAVLATTAPWWLVRRAHAARQQKL
Ga0075425_1011222251	3300006854	Populus Rhizosphere	MLTRRDILQQAGRAATILATTAPWWLVRRAHAARQTKLAAWVPAALAPQV
Ga0075436_1011694841	3300006914	Populus Rhizosphere	MLTRRDVLQRAGTATALATTASWWLVRRAHAARDKKLVVWVNTALAPQVD
Ga0075436_1013407172	3300006914	Populus Rhizosphere	MPTTRREILKTAGKTAAVVTTTAPWWLSRHAHAARQTKLVVWNPAALAPQ
Ga0066710_1048257352	3300009012	Grasslands Soil	MQTRRDVLRWAGTATTLATTASWWLVRRAHAARQAKLVVWNP
Ga0099829_116554471	3300009038	Vadose Zone Soil	MLTRRDVLRRAGTATALATTASWWLVRRAHAARDKKLVVW
Ga0099828_113452122	3300009089	Vadose Zone Soil	MLTRRTILERAGKTAAVLTTTAPWWLVRRAQAARQAKLVVWN
Ga0099828_115205742	3300009089	Vadose Zone Soil	MLTRRDVLRRAGTATALATTASWWLVRRAHAARDKKLVVWVPTALAPQVD
Ga0075418_109071841	3300009100	Populus Rhizosphere	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARQHKLVVWN
Ga0075418_130311781	3300009100	Populus Rhizosphere	MQTRREILKTAGKTAVLTTTAPWWLVRRAHAARAAKLVVWNP
Ga0066709_1033932292	3300009137	Grasslands Soil	MLTRRDILQQAGRTAAVLATTAPWWLVRGAHAARQNKLV
Ga0111538_111232282	3300009156	Populus Rhizosphere	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARDTK
Ga0111538_137715962	3300009156	Populus Rhizosphere	MLTRRDMLRQAGRTAAVLATAAPWWLVRRAHAARDK
Ga0105104_106505941	3300009168	Freshwater Sediment	MLTRRDVLKQAGVMAAVATTTPWWLVRRAHAARREKLIV
Ga0105249_125767452	3300009553	Switchgrass Rhizosphere	MPTTRREILKTVGKTAAVVTTTAPWWLSRRAHAARQAKLVVWN
Ga0114944_10041531	3300009691	Thermal Springs	MIRQAGMAAVLATTAPWWLVRRAHAARDKKLIVWNSASLAPQVDKIM
Ga0105076_10331922	3300009816	Groundwater Sand	MLTRREVLLATGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPAALAPQV
Ga0105062_10753171	3300009817	Groundwater Sand	MLTRREILQQTGKTAAVLTATAPWWLVRRAHAARSAK
Ga0105085_11221351	3300009820	Groundwater Sand	MLTRRNILRQAGTVAVLATTAPWWLVRRAHVARDKKLIVWSGATLA
Ga0126380_111159782	3300010043	Tropical Forest Soil	MMLTRREVLKQAGTMAALATMAPWWVCRRAHAARRE
Ga0126321_11724281	3300010145	Soil	MLTRRDILRQTGTATALAMTASWWLVRQAHAARDKKL
Ga0126321_12602152	3300010145	Soil	MLTRRDILQWTGRTAVVLATTAPWWLVRRAHAARDKKLTVWNPA
Ga0134086_104070951	3300010323	Grasslands Soil	MPTRREILKTAGTVTLVSTTAPWWLVRRAHAARAAKLVVW
Ga0134062_107837991	3300010337	Grasslands Soil	MPTRREILKTAGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPAALA
Ga0126378_111914592	3300010361	Tropical Forest Soil	MLTRRDVLCRAGTATALATTASWWLVRQAHAARDKK
Ga0126377_107864222	3300010362	Tropical Forest Soil	MLSRRDLLQQLGVAALATTAPWWLVRRAHAARREKLIVWN
Ga0126377_110694441	3300010362	Tropical Forest Soil	MLTRRDILQQAGRTAAILATTAPWWLVRGAHAARQ
Ga0126383_112909771	3300010398	Tropical Forest Soil	MQTRREILKAAAATAVVNTTAPWWLVRSAHAARAAKLVVWNPAALAP
Ga0134127_110107312	3300010399	Terrestrial Soil	MLTRRDVLRQSGRAVTIVATTAPWWLVRRAHAARQNKLIVWNPAA
Ga0134122_111559692	3300010400	Terrestrial Soil	MPTTRREMLKTAGKSAAVVTTTAPWWLSRRAHAARQ
Ga0127502_103656132	3300011333	Soil	MWTRRDMLRQTGAAAVLATTTPWWMIRRAHGARQHKLVVWNPAALAPQVD
Ga0137389_110207042	3300012096	Vadose Zone Soil	MLTRRDILQQAVRTAAVLATTAPWWLVRRAHAARQHKLVVWNLTAL
Ga0137388_108496792	3300012189	Vadose Zone Soil	MLTRRDILQQAVRTAAILATTAPWWLVRRAHAARQ
Ga0137383_107101181	3300012199	Vadose Zone Soil	MPTTRREILQRAGKTATVLTATAPWWLVRRAHAARQAKLVVWN
Ga0137399_106016661	3300012203	Vadose Zone Soil	MPTTRREILQRAGKTATVLTATTPWWLVRRAHAARQAKLVVWNPAALAPQV
Ga0137447_10658722	3300012226	Soil	MLTRRDILQQAGKTATVLTTTAPWWLVRRAHAARKAKLVVWNPAALAPQVDKI
Ga0137386_107584891	3300012351	Vadose Zone Soil	MRTRREILKTAGTTAAILTTTAPWWLVRRAHAARQAKLVVWNPAE
Ga0137367_100768214	3300012353	Vadose Zone Soil	MLTRREILQAAARTATVLTTTAPWWLVRRAHAARAAKLVVW
Ga0137367_101261153	3300012353	Vadose Zone Soil	MLTRRNILQQAGRTAAVLATTAPWWLVRRAHAARQA
Ga0137371_101987131	3300012356	Vadose Zone Soil	MLTRRDALRQAGMVAALATTAPWWVVRRAHAARREKLI
Ga0137385_111406352	3300012359	Vadose Zone Soil	MLTRRDILQQAGRAATILATTAPWWLVCRAHAARQNKLVVWNQA
Ga0137390_114823982	3300012363	Vadose Zone Soil	MLTRREILQHGGRAATVLATTAPWWLVRRAHAARQAKLV
Ga0150984_1097767022	3300012469	Avena Fatua Rhizosphere	MLTRRDVLRQAGTMAALATTAPWWLVRRAHAARSEKLVVWS
Ga0137358_107487541	3300012582	Vadose Zone Soil	MPTRREILKQAGKTAALTTAAPWWLVRRAHAARQAK
Ga0137397_108270732	3300012685	Vadose Zone Soil	MPTRREILKTAGTVTLVSTTAPWWLVRRAHAARAAKLVVWN
Ga0137410_114761221	3300012944	Vadose Zone Soil	MLTRRDVLQRTGTATALATTASWWLVRRAHAARQNKLVV
Ga0126369_103160191	3300012971	Tropical Forest Soil	MLTRRDVLQRAGTATALATTASWWLVRRAHAARDKKLVA
Ga0163162_116121122	3300013306	Switchgrass Rhizosphere	MLTRRDILQRAGTATALATTASWWLVRRAHAARDKKLTVWNPADLAPQV
Ga0137418_105981381	3300015241	Vadose Zone Soil	MLTRRDVLRRAGTATALATTASWWLVRRAHAARDKKL
Ga0132256_1026126461	3300015372	Arabidopsis Rhizosphere	MLTRRDLLRQTGTATALATTASWWLVRRAHAARDKKLVVWVPTALVPQ
Ga0132255_1013238801	3300015374	Arabidopsis Rhizosphere	MPTRREILKQAGTTAALSATAPWWLVRRAHAARQAKLV
Ga0182033_111869612	3300016319	Soil	MLTRRDILQQAGSTAVVLATTAPWWLVRRAHAARQHKL
Ga0134112_100593743	3300017656	Grasslands Soil	MPTTRREILQQAGKTATVLTATVPWWLVRRAHAARQ
Ga0190265_111470091	3300018422	Soil	MPTRRDVLKQAGMVAALATTAPWWLVRRAHAARREKLIVWNQIAQAPVVD
Ga0190270_107209271	3300018469	Soil	VLTRRGVLKQTGMVAALATTAPWWLVRQAHAARREKLIVWS
Ga0190270_110868122	3300018469	Soil	MPTRREVLKQAGMAAVLATTAPWWLVRRAHAARREKLIV
Ga0190270_131867822	3300018469	Soil	MLTRRDVLQQVGMAAAVAATAPWWLVRRAHAARREKL
Ga0180114_10097352	3300019232	Groundwater Sediment	MLTRRDILQQTGRAATILATTAPWWLVRRAHAARQHKLVVWNP
Ga0180112_12915141	3300019238	Groundwater Sediment	MLTRRDILQQTGRAAAILATTAPWWLVRHAHAARQHKLV
Ga0180111_13259222	3300019244	Groundwater Sediment	MLTRREMLQQARRAAVLATTAPWWLVRRAHAARQNKLTVWNPAAL
Ga0184648_12548941	3300019249	Groundwater Sediment	MLTRRDMLRQARMAAVLATTAPWWLVRRAHAARQNKLTVW
Ga0180115_12170811	3300019257	Groundwater Sediment	MLTRRNILQHAGRTATVLVTTAPWWLVRRAHAARQQKLVVWSTTAL
Ga0184646_12528882	3300019259	Groundwater Sediment	MLTTRRDILRQAGTAAAVLATTAPWWLVRRAHAARQKKLVVWN
Ga0184646_14744292	3300019259	Groundwater Sediment	MLTRRDILQQAGRAATILATTAPWWLVRRAHAVRDKKLTVWN
Ga0184642_13599221	3300019279	Groundwater Sediment	MLTRRDVLRRAGTATALATTAAWWLVRRAHAARRAKLV
Ga0187892_101505841	3300019458	Bio-Ooze	MPTRRDILKTAGTATAVLTTTTAPWWLVRRAHAARQKKLGVFVEVSGCFH
Ga0180118_11078371	3300020063	Groundwater Sediment	MLTRRNILQHAGRTATVLVTTAPWWLVRRAHAARQQKLVVWSTT
Ga0180113_13944081	3300020065	Groundwater Sediment	MLTRRDVIHRAGTATALTTTAAWWLVRRAHAARQAKLVVWNPA
Ga0180113_14394732	3300020065	Groundwater Sediment	MLTRRDVLQQVGRTAVVMATTAPWWLVRRAHAARQHKLVVWN
Ga0206350_108444042	3300020080	Corn, Switchgrass And Miscanthus Rhizosphere	MLTRRDVLRQAGTATALATTASWWLVCRAHAARDKKLTVWVPTALAPQVD
Ga0194110_105422612	3300020084	Freshwater Lake	MFTRRTMLGRAGMAAALATTAPWWLARKAHAARAHKLVVWNPAA
Ga0210378_102440471	3300021073	Groundwater Sediment	MLTRRNIMRQVGTAAALATTAPWWLVRRAHAARDKKL
Ga0210370_11915131	3300021314	Estuarine	MQTRRTLLQQAGSAALLATTSPWWMVPRSAHAARDKKLVVWHLAAL
Ga0222625_11931622	3300022195	Groundwater Sediment	MLTRREVLKQAGAAALATTAPWWLVRRAHAARREKLIVWMPVALAPQ
Ga0209399_101793871	3300025157	Thermal Springs	MLTRRAMLRQARMAAFLATTSPWWLVRRAHAARDKKLVVWHGSALA
Ga0207712_112317862	3300025961	Switchgrass Rhizosphere	MQTRREILKTAGKTAVLTTTAPWWLVRRAHAARAAK
Ga0209801_12401982	3300026326	Soil	MPTRREILKTAGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPAALAPQV
Ga0209802_12333422	3300026328	Soil	MRTRREILKTAGKTAAILTTTAPWWLVRRAHAARQAKLVVWNPAALAPQVDK
Ga0209158_11745752	3300026333	Soil	MRTRREILKTAGKTAAILTTTAPWWLVRRAHAARQAKLVVWNPAAL
Ga0209058_10095201	3300026536	Soil	MPTTRREILQQAGKTATVLTATVPWWLVRRAHAARQAKLVV
Ga0209874_11333382	3300027577	Groundwater Sand	MLTRRNILRQAGTAAALATTAPWWLVRRAHAARDKKLTVWSGASLAPQ
Ga0209466_10930611	3300027646	Tropical Forest Soil	MQTRREILKAAGATAVVSTTAPWWLVRRAHAARAAKLVV
Ga0209799_10718741	3300027654	Tropical Forest Soil	MWTRRKVLRQAGPAVVLATAVPWWLVRRAHAARQTKLVV
Ga0209590_106614751	3300027882	Vadose Zone Soil	MLTRRDILQQAGRTAAVLATTAPWWLVRRAHAARQ
Ga0209488_106765252	3300027903	Vadose Zone Soil	MRTRREMMRQAGTAAVLATTSPWWLVRRAHAARQAKLVVWVPTA
Ga0209382_120728422	3300027909	Populus Rhizosphere	MLTRRDVLQRAGTATALATTASWWLVRRAHAARDKKL
Ga0268264_124871542	3300028381	Switchgrass Rhizosphere	MLTRRDVLRRAGTATALATTASWWLVRRAHAARRAKLVVWNTAAL
Ga0247828_101690972	3300028587	Soil	MLTRRDVLQRAGTATALATTASWWLVRRAHAVRDKKLTVWN
Ga0257175_10213171	3300028673	Soil	MSTRREILKQAGMTATVLTTTAPWWLVRRAHAARQAKLVVWNP
Ga0307278_101803271	3300028878	Soil	MLTRRAILQQAGKTATVLTTTTPWWLVRRAHAARQAKL
Ga0247612_10010173	3300030592	Soil	MLTTRRDILRQAGTAAVILASTAPWWLVRRAHAARQKKLVVWNGASLAPQVD
Ga0247636_103670991	3300030634	Soil	MLTRRDVLKQAGVAAAPATTAPWWLVRRVHAARSEKLIVWMPV
Ga0308206_10034293	3300030903	Soil	MLTRRDVLRQVGTVAMVATTAPWWLMRRAHAARDAKLT
Ga0308206_10875042	3300030903	Soil	MLRRRDVLQRAGTATTLATTATWWLVRRAHAARQLKLVAWVPTALAPQVD
Ga0308206_11028762	3300030903	Soil	MLTRRNILQQAGTTAAVLATTVPWWLVRRAHAARDKK
Ga0308190_10588702	3300030993	Soil	MLTRRDVLRQVGTVAMVATTAPWWLMRRAHAARDAKLTVWSPVALAPQVD
Ga0308204_100343452	3300031092	Soil	MLTRRDILQQAGKTAAVLATTAPWWLVRRTHAARQN
Ga0308199_11367782	3300031094	Soil	MLTRRDMLRQAGRAATILATTAPWWLVRRAHAVRDKKLTVWN
Ga0308199_11461632	3300031094	Soil	MLTRRDILQQAGRTGAVLATTAPWWLVRRAHAARQNKLVVWN
Ga0308191_10020813	3300031098	Soil	MLTRRDMLQQAGRAATILATIAPWWLVRRAHAARQAKLTV
Ga0308187_101430201	3300031114	Soil	VKVMLSRRDVLKQTGTLAALATTAPWWLVRRAHAA
Ga0308187_102905532	3300031114	Soil	MLTRRDVLKQAGTLAALATTAPWWLVRRAHAARRE
(restricted) Ga0255311_10593432	3300031150	Sandy Soil	MLTRRTVLERAAKTAAVVATTAPWWLSRRAHAARQHKLVVW
Ga0310887_100404311	3300031547	Soil	MPTTRREILKTAGKTAAVVTTTAPWWLSRRAHAARQAKL
Ga0318528_100116341	3300031561	Soil	MPTTRREMLKTAGKTAAVVTTAAPWWLSRRAHAARQAKLV
Ga0306918_115282231	3300031744	Soil	MLTRRDILQQAGRTAVVLATTAPWWLVRRAHAARDKKLVVW
Ga0318502_103320482	3300031747	Soil	MPTTRREMLKTAGKTAAVVTTAAPWWLSRRAHAARQA
Ga0307473_101457251	3300031820	Hardwood Forest Soil	MLTRRDILQQAGKAATVLTTTAPWWLSRREHAARQAKLVVWNPAALAPQV
Ga0310909_111673141	3300031947	Soil	MPMRTRREMMQQAGTAAVLATTSPWWLVRRAHAARQAKLV
Ga0310906_105897802	3300032013	Soil	MLTRRDMLQQAGRTAVVLATTAPWWLVRRAHAARDKKLV
Ga0307471_1014055902	3300032180	Hardwood Forest Soil	MPTRREILKTAGKTAAVLTTTAPWWLSRKAHAARAAKLVVW
Ga0307471_1015450772	3300032180	Hardwood Forest Soil	MLTRRTVLTQAGKAAAVVTATAPWWLSRRAHAARQHKL
Ga0307471_1016381081	3300032180	Hardwood Forest Soil	MPTRREILKTAGKTAAVLTTTAPWWLSRKAHAARAAKLVVWNPAA
Ga0307471_1029377981	3300032180	Hardwood Forest Soil	MLTRRAILKQAGKTAAVVTATAPWWLSRKAHAARQHKLV
Ga0364945_0151577_550_696	3300034115	Sediment	MLTRREILKATGKTAAVLTTTTAPWWLVRRAHAARQAKLVVWNPAALAP
Ga0364940_0097665_685_825	3300034164	Sediment	MLTRREILQATGKTATVLTTTAPWWLVRRAHAARQAKLVVWNPAALA
Ga0314780_213558_3_128	3300034659	Soil	MWTRRDMLRQTGAAAVLATTTPWWMTRRAHGARQHKLVVWNP
Ga0314782_149285_421_570	3300034661	Soil	MLTRRDILQQTGRAAVIMATTAPWWLVRHAHAARQNKLVVWNPTALAPQV
Ga0314784_081175_1_114	3300034663	Soil	MLRRRDVLRQAGTATALATTASWWLVRQAHAARDKKLV
Ga0314794_115498_469_588	3300034669	Soil	MLTRRDILRQTGSAAALMATTAPWWLVRHAHAARQNKLVV
Ga0314797_060698_2_121	3300034672	Soil	MLTRRDVLRQAGTATALATAASWWLVRRAHAARDKKLVVW
Ga0314799_046553_379_522	3300034674	Soil	MLTRRDVLRQAGTATALTTTASWWLVRRAHAARDKKLTVWVPTALAPQ

Hidden Markov Model


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