Metagenome / Metatranscriptome Family F044096

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044096
Family Type	Metagenome / Metatranscriptome
Number of Sequences	155
Average Sequence Length	54 residues
Representative Sequence	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRL
Number of Associated Samples	118
Number of Associated Scaffolds	155

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.71 %
% of genes near scaffold ends (potentially truncated)	92.26 %
% of genes from short scaffolds (< 2000 bps)	85.81 %
Associated GOLD sequencing projects	111
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.452 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.387 % of family members)
Environment Ontology (ENVO)	Unclassified (42.581 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.516 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 53.75% β-sheet: 0.00% Coil/Unstructured: 46.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 155 Family Scaffolds
PF00589	Phage_integrase	3.87
PF03401	TctC	3.23
PF07813	LTXXQ	3.23
PF00583	Acetyltransf_1	2.58
PF03466	LysR_substrate	1.29
PF01527	HTH_Tnp_1	1.29
PF01042	Ribonuc_L-PSP	1.29
PF04392	ABC_sub_bind	1.29
PF01557	FAA_hydrolase	1.29
PF00072	Response_reg	1.29
PF03734	YkuD	0.65
PF17200	sCache_2	0.65
PF02148	zf-UBP	0.65
PF13340	DUF4096	0.65
PF05231	MASE1	0.65
PF02543	Carbam_trans_N	0.65
PF00313	CSD	0.65
PF13403	Hint_2	0.65
PF02586	SRAP	0.65
PF02371	Transposase_20	0.65
PF13570	PQQ_3	0.65
PF13548	DUF4126	0.65
PF03403	PAF-AH_p_II	0.65
PF00496	SBP_bac_5	0.65
PF03976	PPK2	0.65
PF04011	LemA	0.65

COG ID	Name	Functional Category	% Frequency in 155 Family Scaffolds
COG3678	Periplasmic chaperone Spy, Spy/CpxP family	Posttranslational modification, protein turnover, chaperones [O]	12.90
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	3.23
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	1.29
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.29
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.65
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.65
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	0.65
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.65
COG2192	Predicted carbamoyl transferase, NodU family	General function prediction only [R]	0.65
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.65
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.65
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.65
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.65
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.65
COG4188	Predicted dienelactone hydrolase	General function prediction only [R]	0.65
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	0.65

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.45 %
Unclassified	root	N/A	13.55 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.45 %
Unclassified	root	N/A	13.55 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.45 %
Unclassified	root	N/A	13.55 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	79.35 %
Unclassified	root	N/A	13.55 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	76.13 %
Unclassified	root	N/A	13.55 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.94 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	67.10 %
Unclassified	root	N/A	13.55 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	1.94 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	64.52 %
Unclassified	root	N/A	13.55 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	62.58 %
Unclassified	root	N/A	13.55 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	62.58 %
Unclassified	root	N/A	13.55 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	62.58 %
Unclassified	root	N/A	13.55 %
Variovorax sp. RA8	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	1.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000682\|JGI12334J11920_100856	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	746	Open in IMG/M
3300000862\|JGI12579J12822_106456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	540	Open in IMG/M
3300000936\|JGI12587J12868_102894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1136	Open in IMG/M
3300004153\|Ga0063455_101392237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	540	Open in IMG/M
3300005332\|Ga0066388_107193187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300005363\|Ga0008090_14518512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	544	Open in IMG/M
3300005457\|Ga0070662_100703380	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	855	Open in IMG/M
3300005467\|Ga0070706_101175870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	705	Open in IMG/M
3300005539\|Ga0068853_101791817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	595	Open in IMG/M
3300005719\|Ga0068861_100050315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3159	Open in IMG/M
3300005764\|Ga0066903_104908470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	710	Open in IMG/M
3300005764\|Ga0066903_107136750	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	579	Open in IMG/M
3300005764\|Ga0066903_108618415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	519	Open in IMG/M
3300005844\|Ga0068862_100548452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1104	Open in IMG/M
3300006057\|Ga0075026_100761099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	584	Open in IMG/M
3300006173\|Ga0070716_101352375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	577	Open in IMG/M
3300006804\|Ga0079221_11450836	Not Available	548	Open in IMG/M
3300009700\|Ga0116217_10938536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	530	Open in IMG/M
3300009792\|Ga0126374_10706194	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	759	Open in IMG/M
3300010046\|Ga0126384_11488688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	634	Open in IMG/M
3300010398\|Ga0126383_11492237	Not Available	766	Open in IMG/M
3300010400\|Ga0134122_11319023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	730	Open in IMG/M
3300011119\|Ga0105246_10261182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1380	Open in IMG/M
3300012971\|Ga0126369_10086447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2798	Open in IMG/M
3300012989\|Ga0164305_10849763	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	762	Open in IMG/M
3300015371\|Ga0132258_11931901	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1486	Open in IMG/M
3300015372\|Ga0132256_102712530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	595	Open in IMG/M
3300015374\|Ga0132255_102802829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	745	Open in IMG/M
3300016319\|Ga0182033_10012644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4840	Open in IMG/M
3300016319\|Ga0182033_10182496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1653	Open in IMG/M
3300016319\|Ga0182033_10602792	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300016357\|Ga0182032_11419819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
3300016357\|Ga0182032_11700851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	550	Open in IMG/M
3300016371\|Ga0182034_10182076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1609	Open in IMG/M
3300016387\|Ga0182040_10403319	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1073	Open in IMG/M
3300016404\|Ga0182037_11913308	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	531	Open in IMG/M
3300016422\|Ga0182039_11673248	Not Available	582	Open in IMG/M
3300016445\|Ga0182038_10773393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	840	Open in IMG/M
3300016445\|Ga0182038_10971197	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300017792\|Ga0163161_11371360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	617	Open in IMG/M
3300017822\|Ga0187802_10220912	Not Available	730	Open in IMG/M
3300018060\|Ga0187765_10378302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	869	Open in IMG/M
3300018060\|Ga0187765_10473388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	788	Open in IMG/M
3300018060\|Ga0187765_11156786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	540	Open in IMG/M
3300020582\|Ga0210395_11445568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	501	Open in IMG/M
3300020583\|Ga0210401_10175610	All Organisms → cellular organisms → Bacteria	1997	Open in IMG/M
3300021170\|Ga0210400_10650019	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	868	Open in IMG/M
3300021171\|Ga0210405_10387141	Not Available	1102	Open in IMG/M
3300021406\|Ga0210386_10512326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1037	Open in IMG/M
3300021406\|Ga0210386_11111247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	671	Open in IMG/M
3300021407\|Ga0210383_10576399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	970	Open in IMG/M
3300021420\|Ga0210394_10114304	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2336	Open in IMG/M
3300021433\|Ga0210391_10694520	Not Available	797	Open in IMG/M
3300021475\|Ga0210392_10771158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	718	Open in IMG/M
3300021479\|Ga0210410_10021090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5632	Open in IMG/M
3300021560\|Ga0126371_10107531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2790	Open in IMG/M
3300022557\|Ga0212123_10196581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1500	Open in IMG/M
3300025320\|Ga0209171_10086535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1952	Open in IMG/M
3300025906\|Ga0207699_10005320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6166	Open in IMG/M
3300025916\|Ga0207663_10723152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	789	Open in IMG/M
3300025921\|Ga0207652_11869250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	506	Open in IMG/M
3300026800\|Ga0207742_107666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	862	Open in IMG/M
3300026804\|Ga0207737_104846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	950	Open in IMG/M
3300026817\|Ga0207775_113062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	635	Open in IMG/M
3300026823\|Ga0207759_101037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2561	Open in IMG/M
3300026839\|Ga0207764_100382	All Organisms → cellular organisms → Bacteria → Proteobacteria	6995	Open in IMG/M
3300026839\|Ga0207764_100794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4371	Open in IMG/M
3300026845\|Ga0207760_105876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1055	Open in IMG/M
3300026847\|Ga0207802_1000632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3680	Open in IMG/M
3300026852\|Ga0207838_104638	Not Available	776	Open in IMG/M
3300026854\|Ga0207727_103693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1632	Open in IMG/M
3300026858\|Ga0207729_103119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	942	Open in IMG/M
3300026859\|Ga0207859_1001590	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	2179	Open in IMG/M
3300026865\|Ga0207746_1011682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	764	Open in IMG/M
3300026868\|Ga0207818_1000383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4540	Open in IMG/M
3300026869\|Ga0207821_1000920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4323	Open in IMG/M
3300026869\|Ga0207821_1001179	All Organisms → cellular organisms → Bacteria → Proteobacteria	3626	Open in IMG/M
3300026871\|Ga0207825_102238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1743	Open in IMG/M
3300026872\|Ga0207785_1000582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4276	Open in IMG/M
3300026872\|Ga0207785_1011808	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	783	Open in IMG/M
3300026889\|Ga0207745_1000838	All Organisms → cellular organisms → Bacteria	4399	Open in IMG/M
3300026889\|Ga0207745_1022642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300026909\|Ga0207858_1001902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	2198	Open in IMG/M
3300026909\|Ga0207858_1001999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2139	Open in IMG/M
3300026947\|Ga0207853_1047224	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	548	Open in IMG/M
3300026953\|Ga0207835_1004210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp. RA8	1795	Open in IMG/M
3300026979\|Ga0207817_1014641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300026979\|Ga0207817_1031089	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300027011\|Ga0207740_1022350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	823	Open in IMG/M
3300027023\|Ga0207736_104640	Not Available	897	Open in IMG/M
3300027024\|Ga0207819_1045536	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300027039\|Ga0207855_1006126	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1786	Open in IMG/M
3300027045\|Ga0207726_1057780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	510	Open in IMG/M
3300027703\|Ga0207862_1198256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	596	Open in IMG/M
3300031545\|Ga0318541_10743422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	547	Open in IMG/M
3300031681\|Ga0318572_10245461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1052	Open in IMG/M
3300031708\|Ga0310686_101808884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	834	Open in IMG/M
3300031708\|Ga0310686_117168601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	519	Open in IMG/M
3300031718\|Ga0307474_10637399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	841	Open in IMG/M
3300031718\|Ga0307474_10692941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	805	Open in IMG/M
3300031719\|Ga0306917_10144031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1761	Open in IMG/M
3300031719\|Ga0306917_10567214	All Organisms → cellular organisms → Bacteria	892	Open in IMG/M
3300031719\|Ga0306917_11067394	Not Available	629	Open in IMG/M
3300031719\|Ga0306917_11405818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300031736\|Ga0318501_10373710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	768	Open in IMG/M
3300031744\|Ga0306918_10912927	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	684	Open in IMG/M
3300031744\|Ga0306918_11527985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	510	Open in IMG/M
3300031747\|Ga0318502_10547312	All Organisms → cellular organisms → Bacteria	695	Open in IMG/M
3300031747\|Ga0318502_10576834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	676	Open in IMG/M
3300031747\|Ga0318502_10718861	Not Available	604	Open in IMG/M
3300031771\|Ga0318546_11009597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	585	Open in IMG/M
3300031771\|Ga0318546_11172391	Not Available	540	Open in IMG/M
3300031777\|Ga0318543_10510290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	539	Open in IMG/M
3300031777\|Ga0318543_10559413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	512	Open in IMG/M
3300031780\|Ga0318508_1213259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	554	Open in IMG/M
3300031782\|Ga0318552_10459203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	650	Open in IMG/M
3300031797\|Ga0318550_10467808	Not Available	609	Open in IMG/M
3300031821\|Ga0318567_10457989	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300031832\|Ga0318499_10197115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	785	Open in IMG/M
3300031833\|Ga0310917_10113372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1758	Open in IMG/M
3300031833\|Ga0310917_10397076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	937	Open in IMG/M
3300031845\|Ga0318511_10499883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	563	Open in IMG/M
3300031859\|Ga0318527_10287099	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	700	Open in IMG/M
3300031879\|Ga0306919_11099732	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300031879\|Ga0306919_11258303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	561	Open in IMG/M
3300031880\|Ga0318544_10388224	Not Available	543	Open in IMG/M
3300031910\|Ga0306923_10058282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4281	Open in IMG/M
3300031910\|Ga0306923_10680242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1147	Open in IMG/M
3300031910\|Ga0306923_11258564	Not Available	787	Open in IMG/M
3300031910\|Ga0306923_11800403	Not Available	629	Open in IMG/M
3300031912\|Ga0306921_12082714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	602	Open in IMG/M
3300031941\|Ga0310912_10424221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1036	Open in IMG/M
3300031942\|Ga0310916_11628794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300031945\|Ga0310913_10186423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1446	Open in IMG/M
3300031947\|Ga0310909_10175876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1770	Open in IMG/M
3300031954\|Ga0306926_10134152	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3061	Open in IMG/M
3300031954\|Ga0306926_13019147	Not Available	502	Open in IMG/M
3300031981\|Ga0318531_10588220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	504	Open in IMG/M
3300032001\|Ga0306922_11935831	Not Available	576	Open in IMG/M
3300032008\|Ga0318562_10893087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	507	Open in IMG/M
3300032009\|Ga0318563_10480050	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300032035\|Ga0310911_10459621	Not Available	738	Open in IMG/M
3300032041\|Ga0318549_10274300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	759	Open in IMG/M
3300032059\|Ga0318533_10479232	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300032059\|Ga0318533_10671837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	760	Open in IMG/M
3300032076\|Ga0306924_10343365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1712	Open in IMG/M
3300032076\|Ga0306924_10601194	All Organisms → cellular organisms → Bacteria	1244	Open in IMG/M
3300032174\|Ga0307470_10521116	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	872	Open in IMG/M
3300032180\|Ga0307471_102364936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	671	Open in IMG/M
3300032261\|Ga0306920_101128985	Not Available	1136	Open in IMG/M
3300032261\|Ga0306920_101245342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1073	Open in IMG/M
3300032261\|Ga0306920_101451038	Not Available	982	Open in IMG/M
3300032261\|Ga0306920_102104617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	787	Open in IMG/M
3300033289\|Ga0310914_10136919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2147	Open in IMG/M
3300033289\|Ga0310914_11112154	Not Available	691	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.19%
Host-Associated	Host-Associated	5.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.61%
Plants	Host-Associated → Plants	5.81%
Aquatic	Environmental → Aquatic	2.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	91.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.87%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.94%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.29%
Freshwater	Environmental → Aquatic → Freshwater	0.65%
Sediment	Environmental → Aquatic → Sediment	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	29.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.58%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.94%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.29%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.29%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	52.26%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.45%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.23%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.58%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.94%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.29%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.29%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.29%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.65%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.65%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.65%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.65%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	25.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.29%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.23%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.58%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.58%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.94%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.94%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.29%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.29%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.65%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.65%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.65%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.65%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000682	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 59	Environmental	Open in IMG/M
3300000862	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64	Environmental	Open in IMG/M
3300000936	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 22	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026800	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)	Environmental	Open in IMG/M
3300026804	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 2 (SPAdes)	Environmental	Open in IMG/M
3300026817	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 17 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300026839	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 52 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026852	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 62 (SPAdes)	Environmental	Open in IMG/M
3300026854	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 48 (SPAdes)	Environmental	Open in IMG/M
3300026858	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 69 (SPAdes)	Environmental	Open in IMG/M
3300026859	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 25 (SPAdes)	Environmental	Open in IMG/M
3300026865	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 75 (SPAdes)	Environmental	Open in IMG/M
3300026868	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 32 (SPAdes)	Environmental	Open in IMG/M
3300026869	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)	Environmental	Open in IMG/M
3300026871	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 78 (SPAdes)	Environmental	Open in IMG/M
3300026872	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 74 (SPAdes)	Environmental	Open in IMG/M
3300026889	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 57 (SPAdes)	Environmental	Open in IMG/M
3300026909	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 23 (SPAdes)	Environmental	Open in IMG/M
3300026947	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 6 (SPAdes)	Environmental	Open in IMG/M
3300026953	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 8 (SPAdes)	Environmental	Open in IMG/M
3300026979	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 13 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027023	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 1 (SPAdes)	Environmental	Open in IMG/M
3300027024	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 42 (SPAdes)	Environmental	Open in IMG/M
3300027039	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 14 (SPAdes)	Environmental	Open in IMG/M
3300027045	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12334J11920_1008562	3300000682	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVA
JGI12579J12822_1064562	3300000862	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEP
JGI12587J12868_1028941	3300000936	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQ
Ga0063455_1013922372	3300004153	Soil	MRSAILIFLSILALATTPARAQGTWLETRLTSAICGSGAAAPVANTDGLARRLKLTDPQK
Ga0066388_1071931871	3300005332	Tropical Forest Soil	MSGASQPGRSVVRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTD
Ga0008090_145185122	3300005363	Tropical Rainforest Soil	VRSAILLFLAILTFATTPARAQGTWLETRMFKAICSSKAKPANTDRLARRLNLTDPQK
Ga0070662_1007033801	3300005457	Corn Rhizosphere	MRSAILIFLAILAFATTPARAQGSWLETRFARAICSGGATPVANTDGLAKRLKLTDPQKRR*
Ga0070706_1011758702	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VRSAILFFLAILVFATTPARAQGTWLETRMTRAICSGEATPVANTYGLAGRLRLPILKKRR*
Ga0068853_1017918171	3300005539	Corn Rhizosphere	MRSAILIFLAILAVATTPARAQGTWVETRFARAICGGGAAPVASTDGLAKRLKLTDRQKVALKD
Ga0068861_1000503154	3300005719	Switchgrass Rhizosphere	MRSAILIFLAILAFATTPARAQGSWLETRFARAICSGEATPVANTDGLARRLKLTDPQKRR*
Ga0066903_1049084702	3300005764	Tropical Forest Soil	MRSAILIFLAILAFATTPARAQGTWLQTRMTRAICNSAATPVANTDGLASRLKLTDPQKAAL
Ga0066903_1071367501	3300005764	Tropical Forest Soil	VRSAILIFLAMLAFATTPARAQGTWLETRMIRGICSSEAAPVANTDRLASRLNL
Ga0066903_1086184152	3300005764	Tropical Forest Soil	MRSAIPVYVVILAFAAPPAHAQGTWLETRMIKAICSSGETPVANTDGLARRLKLTDPQK
Ga0068862_1005484521	3300005844	Switchgrass Rhizosphere	MRSAILIFLAILAFATTPARAQGSWLETRFARAICSGGATPVANTDGLARRLKLTDPQKRR*
Ga0075026_1007610991	3300006057	Watersheds	VRSAILIFVAILAFATTPARAQGTWLEKRMIAAICSSKATPAA
Ga0070716_1013523751	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	VRSTILIFLAILVFATTQARAQGTWLETKLIRAACSSKDTSPANADGLAKRLNLTDPQRRR*
Ga0079221_114508362	3300006804	Agricultural Soil	MRSAILIFVAILAFAASPARAQNIRAVCSSTATPAVSTDRLAKRLRLTDAQ
Ga0116217_109385361	3300009700	Peatlands Soil	VRSAILIFLAILAFATTPARAQGTWLETRLIRAVCSSKATPAANTDRLAKRLNLTDPQKAALKDL
Ga0126374_107061942	3300009792	Tropical Forest Soil	VRSAIPIFLAILAFATTPARAQGTWLETSMIRAICSSKATPADNTDRLAKRLKLTDPQKAALKDLTD
Ga0126384_114886881	3300010046	Tropical Forest Soil	MSGASQPGRSVVRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRLA
Ga0126383_114922371	3300010398	Tropical Forest Soil	VRSAIPIFLAILAFAMTPARAQGTWLETSMIRALCSSKATPAANTDRLAK
Ga0134122_113190232	3300010400	Terrestrial Soil	MRSAILIFLAILAFATTPARAQGSWLETRFARAICSGGA
Ga0105246_102611821	3300011119	Miscanthus Rhizosphere	VRSATLIFFVFLAFATTPARAQGTWLETRITRAICSSEVTPVANTDRLARRLN
Ga0126369_100864476	3300012971	Tropical Forest Soil	MSGASQPGRSVVRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRLARRLNLTDP
Ga0164305_108497631	3300012989	Soil	MLFFLAMLAFATTPARAQGTWLETRMTRAICSGEATPVANTDGLARRLRSGAERLD*
Ga0132258_119319011	3300015371	Arabidopsis Rhizosphere	MRSAILIFLAILAVATTPARAQGTWVETRFARAICGGGAAPVAN
Ga0132256_1027125302	3300015372	Arabidopsis Rhizosphere	VLRSAILFFVAILVFETTPVRAQGTWLQTRISRAICSSEGTRVADTDRLAKRLNLSDSQKAAL
Ga0132255_1028028292	3300015374	Arabidopsis Rhizosphere	MSGASQKWRFVVRSAILIFLAVLAFAVTPARAQGTWLETRITRAICSGEVTPVANTDRL
Ga0182033_100126441	3300016319	Soil	MSGASKNGRVVVHSAIFIFFCILVFATTPARAQGTWLETKMISAICSSDAAPAANTDRRHKLVQAC
Ga0182033_101824963	3300016319	Soil	VRSAIAIFLAILAFATTPARAQGTWLETRMISSICSS
Ga0182033_106027921	3300016319	Soil	VRSAILIFLAILAFATTPARAQGWFDTRLIEAICNSKATPANNTD
Ga0182032_114198192	3300016357	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSSEATPVAN
Ga0182032_117008511	3300016357	Soil	VRSAIPIFFVILVFATMPAHAQGTWLETRMIRSICSSEATPVANTDRLARRLNLTDP
Ga0182034_101820763	3300016371	Soil	MRWAILIFLAVLTFATTPARAQGTWLERKMISGICSSEATPVANTDRLASR
Ga0182040_104033191	3300016387	Soil	VRSAILIFLGTLAFATAPARAQGTWLETRMIRGICSS
Ga0182037_119133082	3300016404	Soil	VGPAILIFVAILAFATTPARAQGTWLETRMIGAICSSEATPVANADRLARRLNLTDPQKAAL
Ga0182039_116732482	3300016422	Soil	VRSAIPIFLAILAFTTTPARAQGTWLETSMIRAICSSKA
Ga0182038_107733932	3300016445	Soil	VRSAILFFLAILTFATTPARAQGTWLERRMISSICSSEATPAANTDRLA
Ga0182038_109711972	3300016445	Soil	VSSAILIFFAILAFATTPAHAQGTWLETRMIRAICSSEATPVANTDRLARRLNL
Ga0163161_113713602	3300017792	Switchgrass Rhizosphere	MRSAILIFLAILAFATTPARAQGSWLETRFARAICSGGATPVANTDGLAKRLKLTDPQKR
Ga0187802_102209122	3300017822	Freshwater Sediment	VRSAILIFLAILAFATTPARAQGTWLDTRMMRAMCSSKATPADNTDRLARRLNLTDSQKEALKDLSE
Ga0187765_103783021	3300018060	Tropical Peatland	VRSAIPIFIAFLAFATTPARAQGTWLDTRMIRAMCSSKATPADNTDRLA
Ga0187765_104733881	3300018060	Tropical Peatland	VRSAILIFIAILAFATTPARAQGTWLETRMIRAMCSKATPADDTDRLARRLSLT
Ga0187765_111567862	3300018060	Tropical Peatland	VRSAILIFLATLALATTPARAQGTWLETRMIKEICNSDPTPTTNADRVARRLNLTDPQK
Ga0210395_114455681	3300020582	Soil	VRSAILSFLVILTFATTPARAQGTWLETRITRAICSGAGTPVANTDRLARRLNLTDSQKAALKDMI
Ga0210401_101756102	3300020583	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRLAKRLGLTDSQK
Ga0210400_106500192	3300021170	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRLAKRLSLTEPQKAAL
Ga0210405_103871411	3300021171	Soil	MGSYVVRSAILIFLAILAFATTRAHAQGTWLETRLIKAVCSSKATQPADTDRLAK
Ga0210386_105123263	3300021406	Soil	VRSAILIFLVVLAFATTPARAQGTWLETRITRAICSGEVTPGANVDRLARRLNLTDPQKA
Ga0210386_111112472	3300021406	Soil	VRSAILIFLAILGFATTPARAQGTWLETRMIKAICSSEATPAADT
Ga0210383_105763991	3300021407	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRLAKRLSLTDSQKA
Ga0210394_101143042	3300021420	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRLAKRLNLT
Ga0210391_106945201	3300021433	Soil	VRSAIPIFLAILAFATTPARAQGTWLETRLIKAICSDKTTPAANTDR
Ga0210392_107711581	3300021475	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRL
Ga0210410_100210901	3300021479	Soil	VRSAILIFLAILAFATTPARAQGAWLETRMIRAICSSKATPAADTGRLAKRLSLTEPQKAALKDL
Ga0126371_101075316	3300021560	Tropical Forest Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRLARRLNLTDPQKA
Ga0212123_101965811	3300022557	Iron-Sulfur Acid Spring	VRSAILIFLAILAFATTPALAQGTWLETRMIRAICSSKATPAADT
Ga0209171_100865351	3300025320	Iron-Sulfur Acid Spring	VRSAILIFLAILAFATTPARAQGTWLETRMIRAICSSKATPAADTGRLAKRL
Ga0207699_1000532011	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VRSAILIFLVILTFATTPARAQGTWLETRITRAICSGAGTPVANTDRLAR
Ga0207663_107231522	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	VRSAILICLAILSFTTTPARAQGTWLETKLIRAACSSKDTSPANADGLAKRLNLTDPQR
Ga0207652_118692501	3300025921	Corn Rhizosphere	VRSATLIFFVFLAFATTPARAQGTWLETRITRAICSSEVTP
Ga0207742_1076661	3300026800	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALKDLT
Ga0207737_1048461	3300026804	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRL
Ga0207775_1130622	3300026817	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTE
Ga0207759_1010375	3300026823	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKA
Ga0207764_1003821	3300026839	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALKDL
Ga0207764_1007941	3300026839	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTE
Ga0207760_1058762	3300026845	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPV
Ga0207802_10006321	3300026847	Tropical Forest Soil	VSSAILIFFAILAFATTPAHAQGTWLETRMIRAICSSEATPVANTDRLARRLNLTDPQKAALKDL
Ga0207838_1046382	3300026852	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDR
Ga0207727_1036931	3300026854	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEA
Ga0207729_1031192	3300026858	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALKDLTD
Ga0207859_10015901	3300026859	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALK
Ga0207746_10116822	3300026865	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICS
Ga0207818_10003831	3300026868	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAAL
Ga0207821_100092010	3300026869	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALK
Ga0207821_10011791	3300026869	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKA
Ga0207825_1022383	3300026871	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANT
Ga0207785_10005821	3300026872	Tropical Forest Soil	VLSAILIFFAILAFTTTPARAQGTWLETRMIRAICSSEATPVANTDR
Ga0207785_10118081	3300026872	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDR
Ga0207745_10008381	3300026889	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALKD
Ga0207745_10226421	3300026889	Tropical Forest Soil	VRSAILIFLAILAFATTARAQSTWLERSTVSAICSRTASPA
Ga0207858_10019024	3300026909	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQK
Ga0207858_10019991	3300026909	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAALKDL
Ga0207853_10472241	3300026947	Tropical Forest Soil	VRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQK
Ga0207835_10042103	3300026953	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANT
Ga0207817_10146411	3300026979	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLA
Ga0207817_10310891	3300026979	Tropical Forest Soil	VRSAILIFLAILAFATTARAQSTWLERSTVSAICS
Ga0207740_10223502	3300027011	Tropical Forest Soil	MRSAIPIFLAILVLATTPARAQGTWLETRMTRAICSSEATPVANTDRLARRLNLTEPQKAAL
Ga0207736_1046402	3300027023	Tropical Forest Soil	VSSAILIFFAILAFATTPAHAQGTWLETRMIRAICSSEATPVANTDRLARRLNLTDPQKAAL
Ga0207819_10455361	3300027024	Tropical Forest Soil	MRSAILIFLAILVLATTPARAQGTWLETRMTKAICSSEATPVANTDRLARRLNLTE
Ga0207855_10061261	3300027039	Tropical Forest Soil	MCGASQKGRPVVRSAILIFLAILVSATTPARAQGTWLETRMTRAICSSEATPVANTDRLA
Ga0207726_10577801	3300027045	Tropical Forest Soil	MRSAILIFLAILVLATTPARAQGTWLETRMTKAICSSEATPVANTDRLARRLNL
Ga0207862_11982561	3300027703	Tropical Forest Soil	MRSAILIFLAILVLATTPARAQGTWLETRMTKAICSSEATPVANTDRLARRLNLTEP
Ga0318541_107434222	3300031545	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISGICSSEATPEVSTDRLASRLNLTNPQ
Ga0318572_102454612	3300031681	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRLARRLNLTDPQKAALKN
Ga0310686_1018088842	3300031708	Soil	MLFYLAILAFATTPARAQGTWLETRMIRAICSSKATPAANTDRLAKRLGLTEPQKAALKT
Ga0310686_1171686011	3300031708	Soil	VRSAILIFLAILAFATAPARAQGTWLETRLNKAVCSSEATPAANTDRLAKRLNLTDPQKAAL
Ga0307474_106373991	3300031718	Hardwood Forest Soil	VRSAILIFLVVLAFATTPARAQGTWLETRITRAICSGEVTPGANVDRLARRLNLTDSQKA
Ga0307474_106929411	3300031718	Hardwood Forest Soil	VRSAILIFLVILTFATTPARAQGTWLETRITRVICSGEVTAVANTD
Ga0306917_101440311	3300031719	Soil	MRSAILFFLAILTFATTPARAQGTWLERRMIGGICSSEATPVV
Ga0306917_105672143	3300031719	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSSEA
Ga0306917_110673942	3300031719	Soil	MRLAILIFVAILALATTQARAQGTSLETRMIKAICSSKATPVANTDRLARRLNLSDS
Ga0306917_114058181	3300031719	Soil	VRSEILFFLAILAFATTPARAQGTWLETRVTRAICSSEGTPVANIDR
Ga0318501_103737101	3300031736	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMIGGICSSEATPVVSTDRL
Ga0306918_109129271	3300031744	Soil	MRSAILIFLTILAFATTPARAQGTWLETRFARAICSGGTAPVANTD
Ga0306918_115279852	3300031744	Soil	VRSAIPIFLAILAFATTPARAQGTWLETSTIRAICSSKATPAANTDRLAKRLNLTD
Ga0318502_105473122	3300031747	Soil	VRSAILILLAILAFATTPARAQGTWLETRMIGAICSSEAARVANSDPLAKRLNLNDPQKA
Ga0318502_105768341	3300031747	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRLARRLNL
Ga0318502_107188611	3300031747	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSSEATPVANTDRLAS
Ga0318546_110095972	3300031771	Soil	VRSAILIFLSILAFATTPARAQGTWLETRMIKGICSSEATPVAD
Ga0318546_111723911	3300031771	Soil	VRSAIAIFLAILAFATTPARGQGTWLETKMISSICSSEATPAANTDRLAKRLNLTDPQKAALKALT
Ga0318543_105102902	3300031777	Soil	MRWGILIFLAVLTFATTPARAQGTWLERKMISGICSSEATPVANTDRLASRLNLTDPQKAALKDLSE
Ga0318543_105594131	3300031777	Soil	MRSAILFFLAILTFATTPARAQGTWLETRMIRGICNSEAAPVANTDR
Ga0318508_12132591	3300031780	Soil	MRSAILIFLAILTFATTPARAQGTWLETRMTRAICSSEATPVADTDRLARRLNL
Ga0318552_104592032	3300031782	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISSICSSEATPAANTDRLAKRLNLTDSQKAALK
Ga0318550_104678081	3300031797	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSSEATPVANTDRLA
Ga0318567_104579891	3300031821	Soil	VRSAILIFLAMLAFATTPARAQGTWLETRMIRGICS
Ga0318499_101971152	3300031832	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDR
Ga0310917_101133724	3300031833	Soil	MRLAILIFVAILALATTQARAQGTSLETRMIKAICSSKATPVANTDRLAR
Ga0310917_103970761	3300031833	Soil	VRSAILILLAILAFATTPARAQGTWLETRMIGAICSSEAARVANSDPLA
Ga0318511_104998831	3300031845	Soil	VRSTILIFVASLAFATTPARAQGTWLETRMISAICSSEATPVANTNRLARRLNLTDPQKAALKGLTD
Ga0318527_102870991	3300031859	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICRNEATPVANTDRLARRLN
Ga0306919_110997321	3300031879	Soil	MRPAILFFLAMLAFATTPALAQGTWLERTMIRATCSSKATPVANTDRLAKRLNL
Ga0306919_112583031	3300031879	Soil	VRSEILFFLAILAFATTPARAQGTWLETRVTRAICSSEGTPVANIDRLARRL
Ga0318544_103882242	3300031880	Soil	VRSAIAIFLAILAFATTPARGQGTWLETKMISSICSSEAT
Ga0306923_100582825	3300031910	Soil	VRSAILILLAILAFATTPARAQGTWLETRMIGAICSSEAARVANSDPLAKRLNLNDPQ
Ga0306923_106802421	3300031910	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISGICSSEATPEVSTDR
Ga0306923_112585641	3300031910	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSS
Ga0306923_118004032	3300031910	Soil	MRPAILFFLAMLAFATTPALAQGTWLERTMIRATCSSKATPVANTDRLAKRLNLTDPP
Ga0306921_120827141	3300031912	Soil	VRLAILIFLAILAFATTPAHAQGTWLETKMIRGICSSEATPVANTDRLASRLNLT
Ga0310912_104242212	3300031941	Soil	VRSAILIFLGTLAFATAPARAQGTWLETRMIKAICNSEATPIANTDRVARRLNLTDPQKAALKD
Ga0310916_116287941	3300031942	Soil	VRSAIPMFLAILAFATTPARAQGTWLETSMIRAICSSKATTAANTD
Ga0310913_101864233	3300031945	Soil	VRSAILILLAILAFATTPARAQGTWLETRMIGAICSSEAARVANSDPLAKRLNLTDPQK
Ga0310909_101758761	3300031947	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISGICSSEATPEVSTDRLASRLNLTNPQK
Ga0306926_101341525	3300031954	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISGICSSEATPEVSTDRLASRL
Ga0306926_130191471	3300031954	Soil	VRSAILIFLATLAFATTPARAQGWLDTRLIEAICNSKATPADNTDRLAKLCRRLGEDVAL
Ga0318531_105882202	3300031981	Soil	VRSAILIFLSILAFATTPARAQGTWLETRMIKGICSSEATPVADTDRLARRLNLTDPQKA
Ga0306922_119358312	3300032001	Soil	VRSTILILLAILASATTTARAQSSWLETRMIREICSSKATPAANTDRLAKRLDLTDPQKAALKDLT
Ga0318562_108930871	3300032008	Soil	MRSAILFFLAILTFATTPARAQGTWLERRMISGICSSEATPVVSTDRLASRLNLTNPQKA
Ga0318563_104800501	3300032009	Soil	VRSAILILLAILTFATTPARAQGTWLETRMIGAICSSEAARVAN
Ga0310911_104596212	3300032035	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMIRGICSSEATPVANTDRLASRLNL
Ga0318549_102743001	3300032041	Soil	VRSAILIFLAILAFATTPARAQGTWLETRMIKGICSNEATPVANTDRL
Ga0318533_104792321	3300032059	Soil	VRLAILIFLAILAFATTPARAQGTWLETKMISAICSGDATPATNTDRLAKRLSLT
Ga0318533_106718373	3300032059	Soil	VRSAILIFLAMLAFATTPARAQGTWLETRMIRGICSSEAAPVANTDRLASRLNLTDPQKA
Ga0306924_103433655	3300032076	Soil	VRSAILIFLGTLAFATAPARAQGTWLETRMIKAICNSEATPIANTDRVARRLNLTDPQKTAE
Ga0306924_106011941	3300032076	Soil	MRLAILIFVAILALATTQARAQGTSLETRMIKAICSSKATPVANTDRLARRLNLSDSQKA
Ga0307470_105211161	3300032174	Hardwood Forest Soil	VRSAILFFLAILVFATTPARAQGTWLETRMTRAICSGEATPVANTDGLARRLR
Ga0307471_1023649361	3300032180	Hardwood Forest Soil	VRSAILIFLVILTFATTPARAQGTWLETRITRVICSGEVTAVANTDRLARRL
Ga0306920_1011289852	3300032261	Soil	MRPAILFFLAMLAFATTPALAQGTWLERAMIRATCSSKATPVANTDRLAKRLNLTDPQKA
Ga0306920_1012453423	3300032261	Soil	VRSAIPIFLAILAFATTPARAQGTWLETSMIRAICSSKATPAANTDRLAKRLNLTDP
Ga0306920_1014510383	3300032261	Soil	VRSAILFFLATLAFATTPARAQSTWLETRMIKEICNSEPTPTTNTDRMARRL
Ga0306920_1021046172	3300032261	Soil	VRSAILFFLAILTFATTPARAQGTWLERRMISSICSSEATPAANTDRLASQLNLTDP
Ga0310914_101369194	3300033289	Soil	MRSAILIFLAILTFATTPARAQGTWLERRMISGICSSEATPEVSTDRLASR
Ga0310914_111121541	3300033289	Soil	MRLAILIFVAILALATTQARAQGTSLETRMIKAICSSKATPVANTDRLARRLNLSDSQKAMLKDLTDT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044096

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences