Metagenome / Metatranscriptome Family F044077

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F044077
Family Type	Metagenome / Metatranscriptome
Number of Sequences	155
Average Sequence Length	47 residues
Representative Sequence	VIKIAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKPNG
Number of Associated Samples	131
Number of Associated Scaffolds	155

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.62 %
% of genes near scaffold ends (potentially truncated)	89.68 %
% of genes from short scaffolds (< 2000 bps)	80.65 %
Associated GOLD sequencing projects	124
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.387 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.710 % of family members)
Environment Ontology (ENVO)	Unclassified (27.097 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.452 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 23.94% β-sheet: 0.00% Coil/Unstructured: 76.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 155 Family Scaffolds
PF09955	DUF2189	8.39
PF10503	Esterase_PHB	1.29
PF04392	ABC_sub_bind	1.29
PF01575	MaoC_dehydratas	0.65
PF12850	Metallophos_2	0.65
PF04311	DUF459	0.65
PF06577	EipA	0.65
PF13607	Succ_CoA_lig	0.65
PF13426	PAS_9	0.65
PF03928	HbpS-like	0.65
PF00126	HTH_1	0.65
PF02798	GST_N	0.65
PF00144	Beta-lactamase	0.65

COG ID	Name	Functional Category	% Frequency in 155 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.29
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.65
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.65
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.65
COG2845	Peptidoglycan O-acetyltransferase, SGNH hydrolase family	Cell wall/membrane/envelope biogenesis [M]	0.65

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	88.39 %
Unclassified	root	N/A	11.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	88.39 %
Unclassified	root	N/A	11.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.39 %
Unclassified	root	N/A	11.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	85.16 %
Unclassified	root	N/A	11.61 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.65 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	84.52 %
Unclassified	root	N/A	11.61 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.65 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.65 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	46.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	16.13 %
Unclassified	root	N/A	11.61 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	46.45 %
Unclassified	root	N/A	11.61 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	3.87 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.65 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	46.45 %
Unclassified	root	N/A	11.61 %
Methylocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa	1.29 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.65 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	46.45 %
Unclassified	root	N/A	11.61 %
Methylocapsa acidiphila	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1.29 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.65 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.65 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.65 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_101325445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1061998	Not Available	662	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10080773	Not Available	695	Open in IMG/M
3300000955\|JGI1027J12803_108512867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300001989\|JGI24739J22299_10188349	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	606	Open in IMG/M
3300002568\|C688J35102_118468946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300002910\|JGI25615J43890_1012629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1371	Open in IMG/M
3300002911\|JGI25390J43892_10124471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300004633\|Ga0066395_10001269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9060	Open in IMG/M
3300005181\|Ga0066678_10319283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1020	Open in IMG/M
3300005332\|Ga0066388_100437731	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1950	Open in IMG/M
3300005332\|Ga0066388_102091227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300005332\|Ga0066388_102411020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	954	Open in IMG/M
3300005332\|Ga0066388_105139016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	664	Open in IMG/M
3300005332\|Ga0066388_105455259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	644	Open in IMG/M
3300005332\|Ga0066388_108230161	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300005334\|Ga0068869_101239052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	657	Open in IMG/M
3300005356\|Ga0070674_100222628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1468	Open in IMG/M
3300005363\|Ga0008090_15868168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	782	Open in IMG/M
3300005456\|Ga0070678_101600546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	612	Open in IMG/M
3300005467\|Ga0070706_100089971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2846	Open in IMG/M
3300005549\|Ga0070704_100710621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	892	Open in IMG/M
3300005614\|Ga0068856_100620910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1102	Open in IMG/M
3300005713\|Ga0066905_101132542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300005764\|Ga0066903_105739780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652	Open in IMG/M
3300005764\|Ga0066903_106285581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	620	Open in IMG/M
3300005764\|Ga0066903_108047226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	540	Open in IMG/M
3300005842\|Ga0068858_100777832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300005937\|Ga0081455_10504178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	812	Open in IMG/M
3300006046\|Ga0066652_100449948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1185	Open in IMG/M
3300006175\|Ga0070712_100367410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1181	Open in IMG/M
3300006175\|Ga0070712_101025211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	715	Open in IMG/M
3300006358\|Ga0068871_100678468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	943	Open in IMG/M
3300006580\|Ga0074049_13079778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300006606\|Ga0074062_12139261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	555	Open in IMG/M
3300006844\|Ga0075428_100152033	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2514	Open in IMG/M
3300006844\|Ga0075428_101367738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	743	Open in IMG/M
3300006880\|Ga0075429_100741120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	861	Open in IMG/M
3300009011\|Ga0105251_10218488	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	858	Open in IMG/M
3300009036\|Ga0105244_10595597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	507	Open in IMG/M
3300009167\|Ga0113563_11211894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	879	Open in IMG/M
3300010043\|Ga0126380_10654494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	837	Open in IMG/M
3300010046\|Ga0126384_11570145	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	619	Open in IMG/M
3300010048\|Ga0126373_11957877	Not Available	649	Open in IMG/M
3300010360\|Ga0126372_10313008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1387	Open in IMG/M
3300010361\|Ga0126378_13371313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	507	Open in IMG/M
3300010371\|Ga0134125_10777939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054	Open in IMG/M
3300010396\|Ga0134126_12742296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300010398\|Ga0126383_10046047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3598	Open in IMG/M
3300010398\|Ga0126383_11731634	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	714	Open in IMG/M
3300010398\|Ga0126383_12832403	Not Available	566	Open in IMG/M
3300010868\|Ga0124844_1001260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	3216	Open in IMG/M
3300010868\|Ga0124844_1025484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1806	Open in IMG/M
3300012208\|Ga0137376_11615933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300012356\|Ga0137371_10235924	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300012359\|Ga0137385_11032054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	678	Open in IMG/M
3300012915\|Ga0157302_10415914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300012923\|Ga0137359_10168191	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1956	Open in IMG/M
3300012960\|Ga0164301_10566963	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	832	Open in IMG/M
3300012971\|Ga0126369_13054201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300013306\|Ga0163162_11797797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	701	Open in IMG/M
3300014497\|Ga0182008_10749573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	562	Open in IMG/M
3300014969\|Ga0157376_10188623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1889	Open in IMG/M
3300015371\|Ga0132258_13493526	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1077	Open in IMG/M
3300015372\|Ga0132256_100519878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1302	Open in IMG/M
3300015373\|Ga0132257_100174891	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2530	Open in IMG/M
3300016371\|Ga0182034_11330984	All Organisms → cellular organisms → Bacteria → Proteobacteria	627	Open in IMG/M
3300016387\|Ga0182040_11086727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	670	Open in IMG/M
3300016404\|Ga0182037_10014025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	4719	Open in IMG/M
3300017792\|Ga0163161_10644384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	877	Open in IMG/M
3300018072\|Ga0184635_10134611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	985	Open in IMG/M
3300018073\|Ga0184624_10128694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1101	Open in IMG/M
3300018082\|Ga0184639_10400160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	709	Open in IMG/M
3300018465\|Ga0190269_10125244	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1294	Open in IMG/M
3300018469\|Ga0190270_12523542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300018482\|Ga0066669_11120452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	710	Open in IMG/M
3300021444\|Ga0213878_10121516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1071	Open in IMG/M
3300021560\|Ga0126371_10251575	All Organisms → cellular organisms → Bacteria	1881	Open in IMG/M
3300021560\|Ga0126371_12814095	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300025899\|Ga0207642_10922373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	560	Open in IMG/M
3300025906\|Ga0207699_11343462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300025912\|Ga0207707_11423859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300025915\|Ga0207693_10188198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1625	Open in IMG/M
3300025923\|Ga0207681_10626611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300025941\|Ga0207711_12019431	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	519	Open in IMG/M
3300026023\|Ga0207677_11626820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300026078\|Ga0207702_10940798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	857	Open in IMG/M
3300026118\|Ga0207675_101777549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	636	Open in IMG/M
3300026319\|Ga0209647_1080021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1618	Open in IMG/M
3300026552\|Ga0209577_10399553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	990	Open in IMG/M
3300027909\|Ga0209382_10911439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	924	Open in IMG/M
3300028589\|Ga0247818_11308209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300028712\|Ga0307285_10013734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1784	Open in IMG/M
3300028713\|Ga0307303_10145525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	566	Open in IMG/M
3300028715\|Ga0307313_10067442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1065	Open in IMG/M
3300028720\|Ga0307317_10229374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	627	Open in IMG/M
3300028768\|Ga0307280_10123753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	876	Open in IMG/M
3300028771\|Ga0307320_10035182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1830	Open in IMG/M
3300028784\|Ga0307282_10072110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1571	Open in IMG/M
3300028793\|Ga0307299_10300003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	603	Open in IMG/M
3300028802\|Ga0307503_10866640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300028811\|Ga0307292_10153762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300028814\|Ga0307302_10049444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1956	Open in IMG/M
3300028875\|Ga0307289_10221257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	778	Open in IMG/M
3300028878\|Ga0307278_10011825	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4074	Open in IMG/M
3300031226\|Ga0307497_10606371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300031668\|Ga0318542_10646172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	552	Open in IMG/M
3300031680\|Ga0318574_10081815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1762	Open in IMG/M
3300031681\|Ga0318572_10231398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1084	Open in IMG/M
3300031681\|Ga0318572_10402256	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	814	Open in IMG/M
3300031681\|Ga0318572_10813478	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300031719\|Ga0306917_10097051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2106	Open in IMG/M
3300031724\|Ga0318500_10596326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	560	Open in IMG/M
3300031736\|Ga0318501_10581226	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	614	Open in IMG/M
3300031744\|Ga0306918_10094366	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2114	Open in IMG/M
3300031744\|Ga0306918_10402504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300031769\|Ga0318526_10187467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	844	Open in IMG/M
3300031771\|Ga0318546_10886320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300031781\|Ga0318547_10789855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300031795\|Ga0318557_10568069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300031819\|Ga0318568_11001309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	516	Open in IMG/M
3300031833\|Ga0310917_11045937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300031846\|Ga0318512_10019105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2802	Open in IMG/M
3300031846\|Ga0318512_10515819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	607	Open in IMG/M
3300031860\|Ga0318495_10023738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2645	Open in IMG/M
3300031890\|Ga0306925_10243955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocapsa → Methylocapsa acidiphila	1936	Open in IMG/M
3300031890\|Ga0306925_10907876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031941\|Ga0310912_11524142	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031945\|Ga0310913_10048619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2760	Open in IMG/M
3300031945\|Ga0310913_10337275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1066	Open in IMG/M
3300031947\|Ga0310909_11676020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300031954\|Ga0306926_10242869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2232	Open in IMG/M
3300031954\|Ga0306926_11209107	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300032001\|Ga0306922_10601797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1164	Open in IMG/M
3300032008\|Ga0318562_10683026	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	591	Open in IMG/M
3300032054\|Ga0318570_10023122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2381	Open in IMG/M
3300032060\|Ga0318505_10058511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1670	Open in IMG/M
3300032063\|Ga0318504_10020049	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	2515	Open in IMG/M
3300032076\|Ga0306924_12622442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300034151\|Ga0364935_0107736	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	860	Open in IMG/M
3300034818\|Ga0373950_0071218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	713	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	79.35%
Host-Associated	Host-Associated	20.65%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.77%
Plants	Host-Associated → Plants	20.65%
Aquatic	Environmental → Aquatic	2.58%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.97%
Rhizoplane	Host-Associated → Plants → Rhizoplane	9.03%
Sediment	Environmental → Aquatic → Sediment	1.94%
Freshwater	Environmental → Aquatic → Freshwater	0.65%
Floodplain	Environmental → Terrestrial → Floodplain	0.65%
Roots	Host-Associated → Plants → Roots	0.65%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	61.29%
Loam	Environmental → Terrestrial → Soil → Loam	14.84%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.45%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.29%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.65%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.65%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.65%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.10%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.81%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.94%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.29%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.65%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.65%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.65%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.65%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.65%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.65%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.65%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.39%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.23%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.87%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.58%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.58%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.58%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.94%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.94%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.29%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.29%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	1.29%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.29%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.29%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.29%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.29%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.29%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.65%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.65%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.65%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.65%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.65%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.65%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.65%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.65%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.65%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.65%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.65%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002911	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009036	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG	Host-Associated	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028713	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_184	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028768	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_119	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1013254453	3300000364	Soil	VIKLAGSMLSLVALVVLAAPVHGEDDFPLVGTYTENQA
AF_2010_repII_A100DRAFT_10619981	3300000655	Forest Soil	MIKVAGRMLSLVALAVLATSVHGEDDFPLVGTYTENQAC
AF_2010_repII_A001DRAFT_100807732	3300000793	Forest Soil	MIKVAGRMLSLVALAVLATSVHGEDDFPLVGTYTENQACK
JGI1027J12803_1085128671	3300000955	Soil	VIKQVIKLAASMLSLVVLAVLATSVHGEDDFPLVGTYTENQA
JGI24739J22299_101883491	3300001989	Corn Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKITG
C688J35102_1184689461	3300002568	Soil	VIKGAATALSIVAFAMFATPTLGEDDFPLVGTYTENQVCKGDGSDSGVSRVK
JGI25615J43890_10126291	3300002910	Grasslands Soil	VVKLAASMLSIVVLAVLATSVQGEDDFPLVGTYTENQACKPNGSDPGVS
JGI25390J43892_101244712	3300002911	Grasslands Soil	VIKVAAKVLTIVALTALATPVRAEDDFPIVGTYTENQACKLDGADPG
Ga0066395_100012691	3300004633	Tropical Forest Soil	MIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDPGV
Ga0066678_103192831	3300005181	Soil	MLSLVALAALATPVHAEDDFPLVGTYTENQACKMDGSDPG
Ga0066388_1004377311	3300005332	Tropical Forest Soil	MKATGKVLTIVALVALVTPLHADDDFPIVGTYTENQACKPADPDSSVSRVKITLHD
Ga0066388_1020912272	3300005332	Tropical Forest Soil	MSLVALAALATPVHGEDDFPLVGTYTENQACKRDGSDPGVSRVKITPRDID*
Ga0066388_1024110202	3300005332	Tropical Forest Soil	VIKLAGRALGILALAALTTPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITPRD
Ga0066388_1051390163	3300005332	Tropical Forest Soil	VIKIAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKPNG
Ga0066388_1054552592	3300005332	Tropical Forest Soil	VIKLAARALGILALAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITPRD
Ga0066388_1082301612	3300005332	Tropical Forest Soil	VIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDPGVSRVKITP
Ga0068869_1012390521	3300005334	Miscanthus Rhizosphere	VIKGAAKALSIVAFAMFATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKITGRDI
Ga0070674_1002226281	3300005356	Miscanthus Rhizosphere	VIKGAAKALSIVAFAMFATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKITGRDIDSVF
Ga0008090_158681681	3300005363	Tropical Rainforest Soil	VKRLKVIKVAGRVLSLVALAALPTPVHGEDDFPLVGTYTENQACKTDGSD
Ga0070678_1016005462	3300005456	Miscanthus Rhizosphere	VIKGAATALSVAALAMLATPVVGEDDFPLVGTYTENQVCKGDGSDSGVSRVKITG
Ga0070662_1015564302	3300005457	Corn Rhizosphere	MPVTARMLGIVALGILASPVLAADDFPLVGTYTENKVCNADSFNSGVSRVKITDGNIDS
Ga0070706_1000899714	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	VIKQVIKLAASMLSLVVLAVLATSVHGEDDFPLVGTYTENQACKPNGSD
Ga0070704_1007106212	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VRVIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQAC
Ga0068856_1006209102	3300005614	Corn Rhizosphere	VIKGAATALSVVALAMFATPVLGEDDLPLVGTYTENQVCKGDGSDSGVSRVKITG
Ga0066905_1011325422	3300005713	Tropical Forest Soil	VIKVAARVLGVIALAALGTAAPGEEDFPIVGTYTENQVCKGDGSDSGVSRV
Ga0066903_1057397801	3300005764	Tropical Forest Soil	MIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDPGVSRV
Ga0066903_1062855812	3300005764	Tropical Forest Soil	MKATGRVLTIVALAALATPLHADDDFPIVGTYTENQACKPADPDSSVSRVKITLHD
Ga0066903_1072313671	3300005764	Tropical Forest Soil	VIKLQVIKLQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACK
Ga0066903_1080472261	3300005764	Tropical Forest Soil	VVKVAARMLGVIALAALGTAAPGEEDFPIVGTYTENQVCKGDGSDSGVSRVKI
Ga0066903_1087488923	3300005764	Tropical Forest Soil	VIKLKAIKLQVINLQAMKLAASMLSLVALAGLATPVHGEDDFPLIGTY
Ga0068858_1007778322	3300005842	Switchgrass Rhizosphere	VIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTE
Ga0081455_105041782	3300005937	Tabebuia Heterophylla Rhizosphere	VVKVAARVLGVIALAALGTAAPGEEDFPIVGTYTENQVCKGDGSD
Ga0066652_1004499481	3300006046	Soil	VIKVAAKVLTIVALAALATPVRAEDDFPIVGTYTENQACKPDGADPGVSRVKITSRDID
Ga0070712_1003674104	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKPNGSD
Ga0070712_1010252111	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VIKLAASMLSLVVLAALAAPVHGEDDFPLVGTYTENQACKPNGS
Ga0068871_1006784682	3300006358	Miscanthus Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKI
Ga0074049_130797781	3300006580	Soil	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKG
Ga0074062_121392612	3300006606	Soil	VVKLAASMLSLVALAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITPRDI
Ga0075428_1001520331	3300006844	Populus Rhizosphere	VIKVAARVLGVIALAALGTPAPGEEDFPLVGTYTENQVCKGDGSDSGVSRVKIT
Ga0075428_1013677382	3300006844	Populus Rhizosphere	VIKVAAKVLTIVALLSLATPVHAEDDFPIVGTYTENQ
Ga0075429_1007411203	3300006880	Populus Rhizosphere	VIKVAAKVLTIVALLSLATPVHAEDDFPIVGTYTENQVCKV
Ga0105251_102184882	3300009011	Switchgrass Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVC
Ga0105244_105955972	3300009036	Miscanthus Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGV
Ga0113563_112118942	3300009167	Freshwater Wetlands	VRVIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQA
Ga0105242_125643531	3300009176	Miscanthus Rhizosphere	MLGIVALGTFASPILGADDFPLVGTYTENQVCKADSSSVSRVTITLGDID
Ga0126380_106544941	3300010043	Tropical Forest Soil	MKLAGRVLSIVVLAVLASPVQAEDDFPIVGTYTENQVCKPDGTNPGVSRVKITSRDI
Ga0126384_115701451	3300010046	Tropical Forest Soil	VIKVAGRVLSIVALAALATPVHGGDDFPLVGTYTENQACKTDGSDGGVSR
Ga0126373_119578772	3300010048	Tropical Forest Soil	MIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQ
Ga0126372_103130084	3300010360	Tropical Forest Soil	MIKVAGGVLSLVALAALATPVHGEDDFPLVGTYTENQAC
Ga0126378_133713132	3300010361	Tropical Forest Soil	MKATGKVLTIVALVALVTPLHADDDFPIVGTYTENQACKPADPDSSVSRV
Ga0134125_107779392	3300010371	Terrestrial Soil	VIKGAATALSIAALAMLATPVVGEDDFPLVGTYTENQVCKGDGSDSGVSRVKITGRDIDSVF
Ga0134126_127422962	3300010396	Terrestrial Soil	VIKGAATALSIVGLATLATPVLGEDDFPLVGTYTENQ
Ga0126383_100460475	3300010398	Tropical Forest Soil	MKLAGRLLSIVVLAMLASQVQAEDDFPIVGTYTENQACK
Ga0126383_117316341	3300010398	Tropical Forest Soil	MKATGKVLTIVALVALVTPLHADDDFPIVGTYTENQACKPADPDSSVSRVKITLHDIES
Ga0126383_128324032	3300010398	Tropical Forest Soil	VRKQTATILSVVALAALATPVLGEDEFPLVGTYTENQACTPG
Ga0124844_10012601	3300010868	Tropical Forest Soil	VVKLAGRVLSILALAALATPVQGQDDFPLVGTYTENQACKTDG
Ga0124844_10254843	3300010868	Tropical Forest Soil	VVKLAGRVLSILALAALATPVQGQDDFPLVGTYTENQACKTDGS
Ga0137376_116159332	3300012208	Vadose Zone Soil	MKLAGRLLSIVVLAMLASQVQAEDDFPIVGTYTENQACKPDGSD
Ga0137371_102359245	3300012356	Vadose Zone Soil	MKRLMIKVAGRVLSLVALAALATPVHGEEDFPLVGTYTENQACKT
Ga0137385_110320541	3300012359	Vadose Zone Soil	VKRLKVIKVAGRVLSLVALAALATSVHGEDDFPLVGTYTENQACKTDG
Ga0150984_1120260181	3300012469	Avena Fatua Rhizosphere	MLGIVALGMFALTVLGADDFPLVGTYTEDQVCRADSPDSGVPRVNITVRHIDSRFGLC
Ga0157302_104159142	3300012915	Soil	VRVIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQACKGDGSDS
Ga0137359_101681911	3300012923	Vadose Zone Soil	VKRLKVIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTD
Ga0164301_105669632	3300012960	Soil	VIKGAATALSIVGLATLATPVLGEDDFPLVGTYTEN
Ga0126369_130542011	3300012971	Tropical Forest Soil	MKAIGKVLTIVALAALATPLHADDDFPIVGTYTENQACKPADPDSSV
Ga0163162_117977972	3300013306	Switchgrass Rhizosphere	MLGIVALGILASPVLAADDFPLVGTYTENKVCNADSFNSGVSRVKI
Ga0182008_107495731	3300014497	Rhizosphere	VRVIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQ
Ga0157376_101886234	3300014969	Miscanthus Rhizosphere	VIKGAATALSIVALAMLATPVLGEDDFPLVGTYTENQVCKGDG
Ga0132258_134935262	3300015371	Arabidopsis Rhizosphere	MLSIVALGTFASPILGADDFPLVGTYTENQVCKADS
Ga0132256_1005198781	3300015372	Arabidopsis Rhizosphere	VIKVAVRVLTIAALATLATPLLGEDDFLLVGTYTENQACKGDGSDSGYRA*
Ga0132257_1001748913	3300015373	Arabidopsis Rhizosphere	MKLAGRLLSIVVLAVLASQVQAEDDFPIVGTYTENQVCKPDGSDPGVSRVK
Ga0182034_113309842	3300016371	Soil	VIKVAGRMMSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDPGVSRVKIT
Ga0182040_110867272	3300016387	Soil	VIKIAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITPRDI
Ga0182037_100140251	3300016404	Soil	MVSGGRGQVVKLAGRVLSILALAALATPVQGQDDFPLVGTYTENQACKTDGSD
Ga0163161_106443841	3300017792	Switchgrass Rhizosphere	MKLAGRVLSIVALAVLASPVQAEDDFPIVGTYTENQVCKPDGTNPSVSRVKITT
Ga0184635_101346112	3300018072	Groundwater Sediment	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTENQVCK
Ga0184624_101286942	3300018073	Groundwater Sediment	VIKGAAKALSIVAFAMFATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKI
Ga0184639_104001602	3300018082	Groundwater Sediment	VIKGAAKALSIVAFAMFATPVLGEDDFPLVGTYTENQVCKGDGSDSGVS
Ga0190269_101252442	3300018465	Soil	VIKGAATALSIVALAMLATPVLGEDDFPLVGTYTENQVC
Ga0190270_105385871	3300018469	Soil	MLGIVALGMFASTVLGADDFPLVGTYTEDQVCRADSPDSGVPRVKITVRH
Ga0190270_125235421	3300018469	Soil	MLGIVALATFASPVLGADDFPLVGTYTENQVCKTDSSDP
Ga0066669_111204522	3300018482	Grasslands Soil	VIKVAASLLAAVALASLAAPVVGEDDFPLVGTYTENQVCKGDASDAGVSRVKITS
Ga0213877_100338512	3300021372	Bulk Soil	VRKLQVIKLQVIKLQVIKLAGGMLGLVALAALATPVHGEDDFPLVGTYT
Ga0213878_101215161	3300021444	Bulk Soil	VRKLQVIKLQVIKLQVIKLAGGMLGLVALAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITP
Ga0126371_102515753	3300021560	Tropical Forest Soil	MIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDP
Ga0126371_128140951	3300021560	Tropical Forest Soil	MKLAGRLLSIVVLTMLASQVQAEDDFPIVGTYTENQ
Ga0207642_109223732	3300025899	Miscanthus Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVK
Ga0207699_113434621	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKIT
Ga0207707_114238591	3300025912	Corn Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGD
Ga0207693_101881985	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VKRLMIKVAGRVLSLVALAALATPVHGEDDFPLVGT
Ga0207681_106266111	3300025923	Switchgrass Rhizosphere	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGS
Ga0207706_114165401	3300025933	Corn Rhizosphere	MLGIVALGILASPVLAADDFPLVGTYTENKVCNADSFNSGVSRVKITDGNIDS
Ga0207711_120194311	3300025941	Switchgrass Rhizosphere	VIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQACKGDGSDS
Ga0207677_116268202	3300026023	Miscanthus Rhizosphere	VIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTEN
Ga0207702_109407981	3300026078	Corn Rhizosphere	VIKVAVRVLTIAALATLATPLLGEDDFPLVGTYTENQACKG
Ga0207675_1017775492	3300026118	Switchgrass Rhizosphere	VIKGAAKALSIVAFAMFATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKIT
Ga0209647_10800214	3300026319	Grasslands Soil	VIKVAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKTDGSDTGVSRVKI
Ga0209577_103995531	3300026552	Soil	VIKLAASMLSLVALAALATPVHAEDDFPLVGTYTENQACKPNGSDPGV
Ga0209382_109114391	3300027909	Populus Rhizosphere	VIKVAAKVLTIVALLSLATPVHAEDDFPIVGTYTENQVCKVDGP
Ga0247818_113082092	3300028589	Soil	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCK
Ga0307285_100137343	3300028712	Soil	VIKGAATALSIVAFAMFATPTLGEDDFPLVGTYTENQVC
Ga0307303_101455252	3300028713	Soil	VIKGAFTALSIVALAMLATPVLGEDDFPLVGTYTENQ
Ga0307313_100674422	3300028715	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTENQVCKGDGS
Ga0307317_102293743	3300028720	Soil	MLGIVALATFASPVLGADDFPLVGTYTENQVCKADGSDLGVSRVK
Ga0307280_101237531	3300028768	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTEN
Ga0307320_100351821	3300028771	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVK
Ga0307282_100721103	3300028784	Soil	MKLAGRVLSIVALAVLASPVQAEDDFPIVGTYTENQVCKS
Ga0307299_103000031	3300028793	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTE
Ga0307503_108666401	3300028802	Soil	MLGIVALATFASPVLGADDFPLVGTYTENQVCKADGSDL
Ga0307292_101537622	3300028811	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTENQACKG
Ga0307302_100494441	3300028814	Soil	VIRVAGRVLSIVALVTLATPVLGEDDFPLVGTYTENQA
Ga0307289_102212571	3300028875	Soil	VIRVAGRVLSVVALVTLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVK
Ga0307278_100118255	3300028878	Soil	VIKVAKRVLGLVALAALATPAHGGDDFPLVGTYTENHACKADGSDPG
Ga0307497_106063711	3300031226	Soil	VIKGAATALSIVALATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSR
Ga0318534_103048902	3300031544	Soil	VIKLQVIKLQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNG
Ga0318542_106461721	3300031668	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGIYTENQACKPNGSDPGVSRVTITAR
Ga0318574_100818151	3300031680	Soil	VIKLAASMLSLVALAALATPVHGEDDFPLIGTYTENQACKPNGSDPGVSRVTIT
Ga0318572_102313981	3300031681	Soil	VIKLAPSMLSLVALAALATPVHGEDDFPLIGTYTENQACRPNGSDPGVSRVT
Ga0318572_104022561	3300031681	Soil	VIKVAGRVLSLVALAALATPAHGEDDFPLVGTYTENQACKTDGSDRGVSRVKI
Ga0318572_108134781	3300031681	Soil	MIKVAGRVLSLVALAALATQVHGEDDFPLVGTYTENQAC
Ga0306917_100970511	3300031719	Soil	VIKIAGRVLSLVALAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSR
Ga0318500_105963261	3300031724	Soil	VIKVAGRVLSLVALAALATPAHGEDDFPLVGTYTENQA
Ga0318501_105812262	3300031736	Soil	VIKLAASMLSLVALAALATPVHGEDDFPLIGTYTENQACKPNGSDPGV
Ga0306918_100943664	3300031744	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSDPGVSRVTITARDI
Ga0306918_104025041	3300031744	Soil	VIKLQVIKLQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSDPG
Ga0318509_100029611	3300031768	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGIYTENQACK
Ga0318526_101874672	3300031769	Soil	VIKLAPSMLSFVALAALATPVHGEDDFPLIGTYTENQACRPNGSDPGVSRVT
Ga0318546_108863201	3300031771	Soil	VIKQVIKLAASMLSLIALAALAAPVHGEDDFPLVGTYTDNQACKPNGSDPGVSRVT
Ga0318547_107898552	3300031781	Soil	VIKLAASMLSLVALAALATPVHGEDDFPLIGTYTENQACKPN
Ga0318557_105680692	3300031795	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSDPGVSRVT
Ga0318568_110013092	3300031819	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSD
Ga0318564_101489502	3300031831	Soil	VIKLQVIKLQVIKLAASMLSLVALAALATPVHGEDDFPLIGTYT
Ga0310917_110459371	3300031833	Soil	VIKQVIKLAASMLSLVALAALATPVHGDDDFPLVGTYTENQA
Ga0318512_100191054	3300031846	Soil	VIKLQVIKLAGGMLSLVTLAALATPMHGEDDFPLVGTYTEN
Ga0318512_105158192	3300031846	Soil	MKATGKVLTIVALVALVTPLHADDDFPIVGTYTENQACKPADPDSSVSRVKITLHDIE
Ga0318495_100237381	3300031860	Soil	VIRQVIKLAGSMLSLVVLAVLATPVQGEDDFPLVGTYTENQACKTDGSDPGV
Ga0306925_102439551	3300031890	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPN
Ga0306925_109078761	3300031890	Soil	VIKQVIKLAASMLSLIALAALAAPVHGEDDFPLVGT
Ga0310912_115241422	3300031941	Soil	VIKVAGRMMSLVALAALATPVHGEDDFPLVGTYTENQACKTDG
Ga0310913_100486194	3300031945	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSDPGVSRGT
Ga0310913_103372751	3300031945	Soil	VIKLAASMLSLVVLAALATPVHGEDDFPLVGTYTENQACKPNGSDPGVSRVTITPRD
Ga0310909_116760201	3300031947	Soil	VIRQVIKLAGSMLSLVVLAVLATPVQGEDDFPLVGTY
Ga0306926_102428691	3300031954	Soil	VIKQVIKLAASMLSLVALAVLATPVHGEDDFPLIGTYTENQACKPNGSDPGVSRVTITA
Ga0306926_112091072	3300031954	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGIYTENQACKPNGSDPGVSRVTI
Ga0306922_106017972	3300032001	Soil	VIKLAPSMLSFVALAALATPVHGEDDFPLIGTYTENQACRPNGS
Ga0318562_106830262	3300032008	Soil	VIRQVIKLAGSMLSLVVLAVLATPVQGEDDFPLVGTYTENQACKTDGS
Ga0318570_100231221	3300032054	Soil	VIKLAPSMLSLVALAALATPVHGEDDFPLIGTYTENQA
Ga0318575_105953542	3300032055	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGIYTENQACKPN
Ga0318505_100585111	3300032060	Soil	VIKLQVIKLQVIKLAASMLSLVALAALATPVHGEDDFPLIGTYTENQACKPNGSDPG
Ga0318504_100200495	3300032063	Soil	MVSGGRGQVVKLAGRVLSILALAALATPVQGQDDFPLVGTYTENQA
Ga0318553_103352472	3300032068	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGTYTENQACKPNGSD
Ga0306924_102552081	3300032076	Soil	VIKLQLIKLQAIKLAASMLSLVALAALATPVHGEDDFPLIGIYTENQACKPNGS
Ga0306924_126224421	3300032076	Soil	VIKQVIKLAASMLSLIALAALAAPVHGEDDFPLVGTYTENQAC
Ga0364935_0107736_2_127	3300034151	Sediment	MIKGAAKALSIVAFAMFATPVLGVDDFPLVGTYTENQVCKGD
Ga0373950_0071218_1_159	3300034818	Rhizosphere Soil	VIKGAATALSIVGLATLATPVLGEDDFPLVGTYTENQVCKGDGSDSGVSRVKI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F044077

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences