Metagenome / Metatranscriptome Family F043731

Overview

Basic Information

• Family ID: F043731
• Family Type: Metagenome / Metatranscriptome
• Number of Sequences: 155
• Average Sequence Length: 41 residues
• Representative Sequence: MKTMFLTLAAVLGLALGTASLIPAAHASNVYLYPPSTSAG
• Number of Associated Samples: 79
• Number of Associated Scaffolds: 154

Quality Assessment

• Transcriptomic Evidence: Yes
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 86.45 %
• % of genes near scaffold ends (potentially truncated): 9.68 %
• % of genes from short scaffolds (< 2000 bps): 90.32 %
• Associated GOLD sequencing projects: 75
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (51.613 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (25.806 % of family members)
• Environment Ontology (ENVO): Unclassified (33.548 % of family members)
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Soil (non-saline) (69.032 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Fibrous
• Signal Peptide: Yes
• Secondary Structure distribution:
  α-helix: 38.24%
  β-sheet: 0.00%
  Coil/Unstructured: 61.76%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 154 Family Scaffolds
PF00848	Ring_hydroxyl_A	9.09
PF07021	MetW	8.44
PF03466	LysR_substrate	5.19
PF00126	HTH_1	3.90
PF00903	Glyoxalase	3.25
PF13593	SBF_like	3.25
PF07690	MFS_1	2.60
PF06230	LpxI_C	1.95
PF05685	Uma2	1.95
PF00072	Response_reg	1.30
PF05977	MFS_3	1.30
PF12833	HTH_18	0.65
PF02781	G6PD_C	0.65
PF00999	Na_H_Exchanger	0.65
PF00529	CusB_dom_1	0.65
PF13533	Biotin_lipoyl_2	0.65
PF01053	Cys_Met_Meta_PP	0.65
PF09413	DUF2007	0.65
PF00005	ABC_tran	0.65
PF00211	Guanylate_cyc	0.65
PF00486	Trans_reg_C	0.65
PF13180	PDZ_2	0.65
PF01794	Ferric_reduct	0.65
PF13609	Porin_4	0.65

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 154 Family Scaffolds
COG4638	Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit	Inorganic ion transport and metabolism [P]	18.18
COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	General function prediction only [R]	1.95
COG3494	Uncharacterized conserved protein, DUF1009 family	Function unknown [S]	1.95
COG2814	Predicted arabinose efflux permease AraJ, MFS family	Carbohydrate transport and metabolism [G]	1.30
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.65
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.65
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.65
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.65
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.65
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.65
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.65
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.65
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.65
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.65
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.65
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.65
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.65
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.65
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.65
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.65
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.65
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.65

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.61 %
Unclassified	root	N/A	48.39 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	51.61 %
Unclassified	root	N/A	48.39 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	51.61 %
Unclassified	root	N/A	48.39 %

Level 4

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.10 %

Level 5

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.94 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.29 %

Level 6

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	14.84 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	3.87 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.23 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.94 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.65 %

Level 7

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	7.74 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.23 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	3.23 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.94 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.65 %

Level 8

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	3.87 %
Acidiphilium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium	3.23 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.23 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	2.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.29 %
unclassified Comamonadaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae	0.65 %
Rhodospirillales bacterium 70-18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 70-18	0.65 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.65 %

Level 9

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	3.87 %
unclassified Acidiphilium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium	3.23 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.23 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	2.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.29 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.65 %
Rhodospirillales bacterium 70-18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 70-18	0.65 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.65 %

Level 10

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.39 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	3.87 %
Acidiphilium sp. 21-62-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	3.23 %
Rhodopila	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	3.23 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3.23 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	2.58 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.29 %
Comamonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	0.65 %
Rhodospirillales bacterium 70-18	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 70-18	0.65 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	0.65 %

Associated Scaffolds

Scaffold	Taxonomy	Length
3300003505|JGIcombinedJ51221_10288784	Not Available	667
3300003505|JGIcombinedJ51221_10305557	Not Available	647
3300004080|Ga0062385_10284581	Not Available	939
3300004080|Ga0062385_10924526	Not Available	580
3300004080|Ga0062385_11070410	Not Available	545
3300004091|Ga0062387_101524196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	537
3300004092|Ga0062389_102625452	Not Available	670
3300004092|Ga0062389_104501738	Not Available	524
3300004121|Ga0058882_1823613	Not Available	578
3300004152|Ga0062386_100181650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1650
3300004152|Ga0062386_101631667	Not Available	538
3300004635|Ga0062388_100021376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3771
3300004635|Ga0062388_100230510	All Organisms → cellular organisms → Bacteria	1490
3300004635|Ga0062388_100634514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	985
3300005541|Ga0070733_10697940	Not Available	681
3300005591|Ga0070761_10207308	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163
3300005591|Ga0070761_10233350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1097
3300005591|Ga0070761_10421798	Not Available	816
3300005591|Ga0070761_10484113	Not Available	762
3300005602|Ga0070762_10742080	Not Available	661
3300005602|Ga0070762_11271017	Not Available	510
3300005712|Ga0070764_10238922	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	1031
3300005712|Ga0070764_10823673	Not Available	578
3300005921|Ga0070766_10227892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1175
3300005921|Ga0070766_10884739	Not Available	611
3300009698|Ga0116216_10522437	Not Available	717
3300009698|Ga0116216_10560230	All Organisms → cellular organisms → Bacteria	689
3300010339|Ga0074046_10306334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 70-18	975
3300010343|Ga0074044_10728614	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	647
3300010379|Ga0136449_100293505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	2972
3300010379|Ga0136449_100363784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2590
3300010379|Ga0136449_103175046	Not Available	636
3300010379|Ga0136449_103512237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	597
3300010379|Ga0136449_104656663	Not Available	502
3300010859|Ga0126352_1090084	Not Available	546
3300010859|Ga0126352_1209837	Not Available	592
3300011120|Ga0150983_14682647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641
3300014169|Ga0181531_10079715	All Organisms → cellular organisms → Bacteria → Proteobacteria	1938
3300014200|Ga0181526_10282842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1057
3300014489|Ga0182018_10501850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	642
3300014492|Ga0182013_10264114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium	987
3300014493|Ga0182016_10238675	All Organisms → cellular organisms → Bacteria	1146
3300014501|Ga0182024_10797136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1152
3300014501|Ga0182024_11607832	Not Available	736
3300014501|Ga0182024_11666615	Not Available	720
3300014501|Ga0182024_12158371	Not Available	611
3300014657|Ga0181522_10412931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	808
3300014838|Ga0182030_10160104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2825
3300015206|Ga0167644_1003175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9981
3300015206|Ga0167644_1025897	All Organisms → cellular organisms → Bacteria → Proteobacteria	2459
3300015206|Ga0167644_1032578	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2075
3300017948|Ga0187847_10163290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1216
3300017948|Ga0187847_10181058	Not Available	1150
3300018034|Ga0187863_10142376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1339
3300018038|Ga0187855_10645623	Not Available	616
3300018042|Ga0187871_10685908	Not Available	570
3300018043|Ga0187887_10174029	Not Available	1285
3300018043|Ga0187887_10615036	Not Available	641
3300018047|Ga0187859_10593063	Not Available	624
3300019260|Ga0181506_1304210	Not Available	541
3300019284|Ga0187797_1893133	Not Available	548
3300020582|Ga0210395_10119517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1956
3300020582|Ga0210395_10148651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1748
3300020582|Ga0210395_10255769	Not Available	1317
3300020582|Ga0210395_10262209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	1299
3300020582|Ga0210395_10305700	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1196
3300020582|Ga0210395_10873950	Not Available	669
3300021180|Ga0210396_10322331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	1366
3300021401|Ga0210393_10133635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1989
3300021401|Ga0210393_10357570	Not Available	1189
3300021401|Ga0210393_11634268	Not Available	510
3300021402|Ga0210385_11227410	Not Available	575
3300021403|Ga0210397_10854217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	704
3300021405|Ga0210387_11622968	Not Available	550
3300021420|Ga0210394_10721367	All Organisms → cellular organisms → Bacteria → Proteobacteria	873
3300021433|Ga0210391_10104545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2231
3300021433|Ga0210391_10155045	All Organisms → cellular organisms → Bacteria → Proteobacteria	1803
3300021433|Ga0210391_10201317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1566
3300021433|Ga0210391_10303694	Not Available	1252
3300021433|Ga0210391_11151698	Not Available	601
3300021475|Ga0210392_11366234	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	530
3300021477|Ga0210398_10154138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1870
3300021477|Ga0210398_10178197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	1732
3300021477|Ga0210398_10249123	Not Available	1448
3300021477|Ga0210398_10664170	Not Available	844
3300021477|Ga0210398_10917769	Not Available	701
3300021479|Ga0210410_10755534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	856
3300022509|Ga0242649_1011680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	944
3300022509|Ga0242649_1031352	Not Available	683
3300022712|Ga0242653_1065974	Not Available	614
3300022716|Ga0242673_1070919	Not Available	625
3300022721|Ga0242666_1036619	Not Available	992
3300022721|Ga0242666_1164889	Not Available	550
3300022726|Ga0242654_10186484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714
3300027110|Ga0208488_1009906	Not Available	1925
3300027110|Ga0208488_1016316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1462
3300027394|Ga0209904_1017672	Not Available	549
3300027853|Ga0209274_10072685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1664
3300027853|Ga0209274_10126976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1273
3300027853|Ga0209274_10164034	Not Available	1123
3300027879|Ga0209169_10027001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3062
3300027905|Ga0209415_10117664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2822
3300027905|Ga0209415_10340627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	1257
3300027905|Ga0209415_10970666	Not Available	569
3300028906|Ga0308309_11708153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	534
3300029951|Ga0311371_12280089	Not Available	561
3300030503|Ga0311370_11127269	Not Available	859
3300030520|Ga0311372_11082309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1045
3300030520|Ga0311372_11082309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1045
3300030520|Ga0311372_11252019	All Organisms → cellular organisms → Bacteria → Proteobacteria	944
3300030520|Ga0311372_11719835	Not Available	755
3300030520|Ga0311372_12131809	Not Available	649
3300030535|Ga0210285_1552811	Not Available	519
3300030730|Ga0307482_1086396	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	835
3300030730|Ga0307482_1122518	All Organisms → cellular organisms → Bacteria	734
3300030730|Ga0307482_1166672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	652
3300030738|Ga0265462_10575705	Not Available	846
3300030740|Ga0265460_10733598	Not Available	848
3300030743|Ga0265461_12058969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	654
3300030803|Ga0074037_1715165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	578
3300030863|Ga0265766_1018886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556
3300030863|Ga0265766_1021004	Not Available	538
3300030906|Ga0302314_11270574	Not Available	684
3300030923|Ga0138296_1777535	Not Available	558
3300031015|Ga0138298_1622862	All Organisms → cellular organisms → Bacteria	890
3300031234|Ga0302325_10798094	All Organisms → cellular organisms → Bacteria	1334
3300031234|Ga0302325_11042605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1111
3300031234|Ga0302325_11334248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	940
3300031234|Ga0302325_11816936	Not Available	763
3300031236|Ga0302324_100432216	Not Available	1950
3300031236|Ga0302324_100483150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1816
3300031236|Ga0302324_100514392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1744
3300031236|Ga0302324_101972834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734
3300031524|Ga0302320_11972100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	549
3300031524|Ga0302320_12235773	Not Available	504
3300031667|Ga0310111_132111	Not Available	605
3300031708|Ga0310686_100947652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1558
3300031708|Ga0310686_102113442	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2211
3300031708|Ga0310686_102291832	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	5361
3300031708|Ga0310686_108026512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Rhodopila	4982
3300031708|Ga0310686_112997667	Not Available	972
3300031708|Ga0310686_113077876	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20761
3300031708|Ga0310686_113301046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4187
3300031708|Ga0310686_114653980	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidiphilium → unclassified Acidiphilium → Acidiphilium sp. 21-62-4	568
3300031708|Ga0310686_117536141	Not Available	1902
3300031708|Ga0310686_117721874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	907
3300031708|Ga0310686_119771374	Not Available	539
3300032160|Ga0311301_10586357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614
3300032160|Ga0311301_12404459	Not Available	594
3300032515|Ga0348332_11134969	Not Available	579
3300032515|Ga0348332_11337428	Not Available	541
3300032515|Ga0348332_11906715	Not Available	947
3300032515|Ga0348332_12411214	Not Available	702
3300033887|Ga0334790_149701	Not Available	703
3300034163|Ga0370515_0310239	All Organisms → cellular organisms → Bacteria	667

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Class

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.16%
Aquatic	Environmental → Aquatic	14.84%

Category

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.32%
Freshwater	Environmental → Aquatic → Freshwater	14.84%
Peat	Environmental → Terrestrial → Peat	12.26%
Plant Litter	Environmental → Terrestrial → Plant Litter	2.58%

Type

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.39%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.84%
Loam	Environmental → Terrestrial → Soil → Loam	13.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	12.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	8.39%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	2.58%

Subtype

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	27.74%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.65%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	14.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.55%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	12.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	5.81%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.58%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	2.58%

Habitat

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	25.81%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.32%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.03%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	7.10%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	5.81%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.58%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	2.58%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.94%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	1.94%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.94%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.94%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.29%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.29%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.29%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.65%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.65%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.65%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.65%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.65%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.65%

Associated Samples

Taxon OID	Sample Name	Habitat Type
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental
3300004121	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF109 (Metagenome Metatranscriptome)	Environmental
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental
3300010379	Sb_50d combined assembly	Environmental
3300010859	Boreal forest soil eukaryotic communities from Alaska, USA - C5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental
3300019260	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome)	Environmental
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental
3300027394	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D	Environmental
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental
3300029951	III_Palsa_N1 coassembly	Environmental
3300030503	III_Palsa_E3 coassembly	Environmental
3300030520	III_Palsa_N2 coassembly	Environmental
3300030535	Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO749-VDE026SO (Eukaryote Community Metatranscriptome)	Environmental
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental
3300030738	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly	Environmental
3300030740	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly	Environmental
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental
3300030803	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)	Environmental
3300030863	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU2 (Metagenome Metatranscriptome)	Environmental
3300030906	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_3	Environmental
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental
3300031015	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A9_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental
3300031667	Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE1 (Metagenome Metatranscriptome)	Environmental
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_102887842	3300003505	Forest Soil	MKTMFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNG*
JGIcombinedJ51221_103055572	3300003505	Forest Soil	MKTVFLTLAAVLGLAIGAASVIPAAHASNVQLYQPSNSVG*
Ga0062385_102845812	3300004080	Bog Forest Soil	MKTMFLTLAAVLGLALGTASLLPAAHASQVYLYPPAENGQG*
Ga0062385_109245261	3300004080	Bog Forest Soil	MKTMFLTLAAVLGLALGTASLTSAAQASQVYLYPPSQSAG*
Ga0062385_110704101	3300004080	Bog Forest Soil	MKTMFLTLAAVVGLALGTASLMPAAHASQVYLYPPTDHGMN*
Ga0062387_1015241962	3300004091	Bog Forest Soil	MKTMFLTLAAVLGLALGTASLIPAAHASNVQLYPPSEAPG*
Ga0062389_1026254522	3300004092	Bog Forest Soil	MKTMFLTLAAVLGLALGTASLIPVAHASTVYLYPPSNAAG*
Ga0062389_1045017381	3300004092	Bog Forest Soil	MKTMFLTLAAVLGIALGTVSLTQSAHASNVQLYPPSQATDGRG*
Ga0058882_18236131	3300004121	Forest Soil	RRRTTMKTMFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNG*
Ga0062386_1001816503	3300004152	Bog Forest Soil	MKTVFLTLAAVVGLALGTAATIPAAHASNVQVYPPSNSVG*
Ga0062386_1016316671	3300004152	Bog Forest Soil	MKTMFLTLAAVLGIALGTVSLTPAAYASNVQLYPPSNAVG*
Ga0062388_1000213766	3300004635	Bog Forest Soil	MKTMFLTLAAVLGVALGTASLIPAAHASQVYLYPPAQNGQG*
Ga0062388_1002305101	3300004635	Bog Forest Soil	MKTKLLVLLARLGIAIGSASMIPAAHASQVYLHPPAGNLANG*
Ga0062388_1006345142	3300004635	Bog Forest Soil	MKTMFLALAAVLGFAIGTASLIPAAHASRVYLYQPTDTGNG*
Ga0070733_106979402	3300005541	Surface Soil	MFLTLAAVLGLALGTASLIPAAHASQVYLYPPAQNGQG*
Ga0070761_102073083	3300005591	Soil	MKSMFLTLAAVLGIALGTVSLTHSAYASNVQLYPPSQATDGRG*
Ga0070761_102333502	3300005591	Soil	MKSMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSNAADGRG*
Ga0070761_104217982	3300005591	Soil	MKTVFLTLAAVLGLALGTASVIPAAHASNVQVYPPSNSVG*
Ga0070761_104841131	3300005591	Soil	MKTMLLTLAAVLGLALGTASLIPAAHASNVQLYPPSSVGGNG*
Ga0070762_107420801	3300005602	Soil	MKTMFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNN*
Ga0070762_112710171	3300005602	Soil	MKTMFLTLAAVLGVALGAVSLTPAAYASNVQLYPPSSIGGNG*
Ga0070764_102389222	3300005712	Soil	MKTMFLTLAAVVGLALGTASLIPAAHASNVQLYPPSQAPG*
Ga0070764_108236732	3300005712	Soil	MKTVFLTLAAVLGLVLGTASVIPAAHASNVQVYPPSNSVG*
Ga0070766_102278922	3300005921	Soil	MKTTFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNG*
Ga0070766_108847391	3300005921	Soil	MKTMFLTLAAIVGLALGTASLIPAAHATNIQLYPPSNAPG*
Ga0116216_105224372	3300009698	Peatlands Soil	MKTMFLTLAAVLGLALGTASLIPAARASTVYLYPSSNSVG*
Ga0116216_105602302	3300009698	Peatlands Soil	MKTMFLTLAAVVGLALGTASLIPAAHASQVYLYPPAQNGQG*
Ga0074046_103063341	3300010339	Bog Forest Soil	MKTMFLTLAAVLGIALGTVSLIPAAHASNVSLYPPSESAG*
Ga0074044_107286141	3300010343	Bog Forest Soil	MKTMFLTLAAVAGLALGTASLTTAAQASQVYLYQPSQSAG*
Ga0136449_1002935054	3300010379	Peatlands Soil	MKTLYLTLAAVLGLALGTASVIPAAHASNVQLYPPSNSVG*
Ga0136449_1003637843	3300010379	Peatlands Soil	MKTMFLTLAAVVGLALGTASLIPAAHASQVYLYPPTQNGQG*
Ga0136449_1031750462	3300010379	Peatlands Soil	MKSMFLTLAAILGIALGTASLSPAARASQTYLYPPAGNPANG*
Ga0136449_1035122371	3300010379	Peatlands Soil	RRTTMKTMFLTLAAVVGLALGTASLTTAAQASQVYLYPPSQSAG*
Ga0136449_1046566632	3300010379	Peatlands Soil	MKTMFLTLAAVLGIALGTVSLTPAAHASQVYLYQPSQSVG*
Ga0126352_10900842	3300010859	Boreal Forest Soil	MFLTLAAVLGFAVGTASLIPAAHASKVYLYPPSQSAG*
Ga0126352_12098371	3300010859	Boreal Forest Soil	MKTMFLTLAAILGLALGTTSLVSCAHASKVYLYQPSDSPG*
Ga0150983_146826471	3300011120	Forest Soil	MTMKTMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNN*
Ga0181531_100797152	3300014169	Bog	MTMKTMFLSLAAVLGLALGTASLIPAAHASSVYLYPPSTSAG*
Ga0181526_102828422	3300014200	Bog	MKSMFLTLAAVLGIALGTVSLTPAAHASDVQLYSPSSVGGNG*
Ga0182018_105018502	3300014489	Palsa	MKTMFVTLAAVLGLALGTASLIPAAHASSVYLYPPSTSAG*
Ga0182013_102641142	3300014492	Bog	MKTMFLTLAAALGIVLGTASLIQAAHASSIHLNPPAEGSR*
Ga0182016_102386752	3300014493	Bog	MKTMFLTLAAVLGIALGTVSMSPAANASNVHLNPPTSIGN*
Ga0182024_107971362	3300014501	Permafrost	MKTMFLTLAAVLGLALGTASLTQAAHASQVYLYPPSQSAG*
Ga0182024_116078322	3300014501	Permafrost	MKTMFLTLAAVLGIAIGTASLTPAAQASQTYLYPPAGNLANG*
Ga0182024_116666151	3300014501	Permafrost	MKIMFLTMAAILGIALGTASVIPAAHASSVYLFPPSQSAG*
Ga0182024_121583712	3300014501	Permafrost	MMKTMFLTLAAVLGVALGTASLIPAAHASQVYLYPPAQNGQG*
Ga0181522_104129313	3300014657	Bog	MKTMFLTLAAVLGLALGTASLIPAAHATSVQLYPPSNAPG*
Ga0182030_101601042	3300014838	Bog	MKTMFLTLAAALGIVAGAASMAPAAHASNVHLFPPTSIGNG*
Ga0167644_10031756	3300015206	Glacier Forefield Soil	MKSMFLTLAAVLGIAIGTASLGQAQASQVYLYPPAGNLANG*
Ga0167644_10258973	3300015206	Glacier Forefield Soil	MKTMFLTLAAVLGLALGTASLTPAAHASQTYLYPPAGDLSNG*
Ga0167644_10325782	3300015206	Glacier Forefield Soil	MKTMFLTLAAVVGLALGTASLMPAAHASQVYLYQPTDHGQG*
Ga0187847_101632902	3300017948	Peatland	MKSMFLTLAAVLGIALGTVSLTPAAHASNVQLFPPSSAADGRG
Ga0187847_101810582	3300017948	Peatland	MKTMFLTLAAVLGIAIGIGSIPTAHASTYQFRPPCDCNG
Ga0187863_101423761	3300018034	Peatland	MKSMFLTLAAVLGIALGTVSLTPAAFASNVQLYPPSSVGGNG
Ga0187855_106456232	3300018038	Peatland	MKTMFLTLAAVLGLALGTASLIPAAHATSVQLYPPSNAP
Ga0187871_106859082	3300018042	Peatland	MKTMFLTLAAVLGVAFVTASLIPAAHASNVQLYPPSSVGGNG
Ga0187887_101740293	3300018043	Peatland	MKTMFLTLAAVLGLALGTASLIPAAHATSVQLYPPSNAPG
Ga0187887_106150362	3300018043	Peatland	MKTMFLTLVAVLGIALGTVSLTQSAHASNVQLYPPSQATDGRG
Ga0187859_105930632	3300018047	Peatland	MKTVFLTLAAVLGLALGTASVIPAAHASNVQLYQPSNSVG
Ga0181506_13042101	3300019260	Peatland	MKTMFLTLAAVLGIALGSASLSPAANASNVYLNPPSNGHG
Ga0187797_18931331	3300019284	Peatland	MKSIFLTLAAVLGIALGTASLVPAAHASNVQLYPPTQTGTD
Ga0210395_101195172	3300020582	Soil	MKTMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNN
Ga0210395_101486511	3300020582	Soil	MKTMFLALAAILGVALGTVSLTQSAYASNVQLYPPSQATDGRG
Ga0210395_102557692	3300020582	Soil	MKTMFLTLAAVLGVALGAVSLTPAAYASNVQLYPPSSVGGNG
Ga0210395_102622093	3300020582	Soil	MKTVFLTLAAVLGLALGTASVIPAAHASNVQLYLPSNSVG
Ga0210395_103057002	3300020582	Soil	MKTMFLTLAAVLGLALGTASLIPAAHASNVQLYPPSQAPG
Ga0210395_108739501	3300020582	Soil	MKTMFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSTVGGNG
Ga0210396_103223311	3300021180	Soil	MKTMFLALAAVLGLAIGTASLIPAAHASRVYLYQPTDTGNG
Ga0210393_101336353	3300021401	Soil	MKTMFLTLAAVLGVALGAASLTPAAYASNVQLYPPSSVGGNG
Ga0210393_103575702	3300021401	Soil	MKTLFMTLAAVLGLALGTASLSPAAHAAQVYLYPPAQNGQG
Ga0210393_116342681	3300021401	Soil	MKTMFLTLAAILGLALGTASLTPVAHASNVQLYPPSSVGGNN
Ga0210385_112274101	3300021402	Soil	RRRTTMKTMFLTLAAILGVALGTVSLTQSAYASNVQLYPPSQATDGRG
Ga0210397_108542173	3300021403	Soil	WRTTMKTVFLTLAAVLGLALGTASVIPAAHASNVQLYLPSNSVG
Ga0210387_116229681	3300021405	Soil	MKTIFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNN
Ga0210394_107213672	3300021420	Soil	MKSMFLTLAAVLGIALGTVSLSQSANASNVQLYPPSQATDGRG
Ga0210391_101045452	3300021433	Soil	MKTMFLTLAAIVGLALGTASLIPAAHATNIQLYPPSNAPG
Ga0210391_101550452	3300021433	Soil	MKSMFLTLAAVLGIALGTISLTQSAYASNVQLYPPSNAADGRG
Ga0210391_102013171	3300021433	Soil	MKTMFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNG
Ga0210391_103036941	3300021433	Soil	MKTMFLTLAAVLGLALGTASLIPAAHASNVQLYPPSSVGGNG
Ga0210391_111516981	3300021433	Soil	MKTMFLTLAAVLGVALGAVSLTPAAYASNVQLYPPSSIGGNG
Ga0210392_113662341	3300021475	Soil	MKTMFLTLAAILGVALGTVSLTQSAYASNVQLYPP
Ga0210398_101541381	3300021477	Soil	MKTTFLTLAAVLGIALGTVSLTPSAHASNVQLYPPSSVGGNG
Ga0210398_101781972	3300021477	Soil	MKSMFLTLAAVLGIALGTVSLTHSAYASNVQLYPPSQATDGRG
Ga0210398_102491232	3300021477	Soil	MKTTFLTLAAVLGIALGTVSVSQSAHASNVQLYPPSSVGGNG
Ga0210398_106641701	3300021477	Soil	MKTMFLTLAAIVGVALGTVSLSQSANASNVQLYPPSQATDGRG
Ga0210398_109177692	3300021477	Soil	MKTMFLTLAAVLGVALGSATLAPAAHASNVQVYPPSSVGGNG
Ga0210410_107555342	3300021479	Soil	MKTMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSS
Ga0242649_10116801	3300022509	Soil	MKTMFLTLAAVLGLALGTVSVIPAAHASHVYLYQPSQSAG
Ga0242649_10313522	3300022509	Soil	MKAMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNG
Ga0242653_10659741	3300022712	Soil	MTMKTMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNN
Ga0242673_10709191	3300022716	Soil	FLALAAVLGIALGTVSLSQSAYASNVQLYPPSNAADGRG
Ga0242666_10366191	3300022721	Soil	MKSMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSNAADGRG
Ga0242666_11648891	3300022721	Soil	MKTMLLALAAVLGISLGTASLIPVAHAASVYLYPPSESAG
Ga0242654_101864842	3300022726	Soil	MFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNN
Ga0208488_10099061	3300027110	Forest Soil	RTTMKSMFLTLAAVLGIALGTISLTQSAYASNVQLYPPSNAADGRG
Ga0208488_10163164	3300027110	Forest Soil	MKTVFLTLAAVLGLAIGAASVIPAAHASNVQLYQPSNSVG
Ga0209904_10176721	3300027394	Thawing Permafrost	MKTTFLTLAAVLGIALGTASLIPAAHASTVSLRCV
Ga0209274_100726852	3300027853	Soil	MKTMFLTLAAVVGLALGTASLIPAAHASNVQLYPPSQAPG
Ga0209274_101269763	3300027853	Soil	MKTVFLTLAAVLGLALGTASVIPAAHASNVQVYPPSNSVG
Ga0209274_101640341	3300027853	Soil	MKTMLLTLAAVLGLALGTASLIPAAHASNVQLYPPSSVGGNG
Ga0209169_100270013	3300027879	Soil	MKTMFLTLAAVLGLVLGTASVIPAAHASNVQVYPPSNSVG
Ga0209415_101176643	3300027905	Peatlands Soil	MKTLYLTLAAVLGLALGTASVIPAAHASNVQLYPPSNSVG
Ga0209415_103406272	3300027905	Peatlands Soil	MKTMFLTLAAVLGLALGTASLIPAARASTVYLYPSSNSVG
Ga0209415_109706661	3300027905	Peatlands Soil	MKTMFLTLAAVLGIALGTVSLTPAAHASQVYLYQPSQSVG
Ga0308309_117081531	3300028906	Soil	MKSMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNG
Ga0311371_122800892	3300029951	Palsa	MKTMFLTLAAVLGLAIGTASLIPAAQASSVYLYPPSNAPG
Ga0311370_111272692	3300030503	Palsa	MKIMFLTMAAILGIALGTASLIPTAHASNVYLFPPSQSAG
Ga0311372_110823091	3300030520	Palsa	MKSMFLTLAAVLGLALGAASMIPAAHASNVQLYPPSSVGGNG
Ga0311372_110823092	3300030520	Palsa	MKTMFLTLAAVLGLALGTASMIPAAHASNVQLYPPSSVGGNG
Ga0311372_112520191	3300030520	Palsa	MKTMFLTLAAVLGLALGTASLIPAAHASNVYLYPPSTSAG
Ga0311372_117198352	3300030520	Palsa	MKTMFLTLAAVLGIALGTASLIPAAHASSVWLFPPSQSAG
Ga0311372_121318091	3300030520	Palsa	MKTMFLTLAALLGFAIGTASLIPAAHAARVYLYQPTDNGQG
Ga0210285_15528113	3300030535	Soil	MKTMFLMLAAVLGLVLGTASLTPAAHASQTYLYPPAGDLSNG
Ga0307482_10863961	3300030730	Hardwood Forest Soil	MKTMFLTLAAILGVALGTVSLTQSAYASNVQLYPPSQATDGRG
Ga0307482_11225181	3300030730	Hardwood Forest Soil	MKTMFLTLAAVLGIAIGTASLTPAAQASQVYLYPPAGNLANG
Ga0307482_11666721	3300030730	Hardwood Forest Soil	MKTMFLTLAAVLGLALGTASLTQAAHASQVYLYPPSQSAG
Ga0265462_105757051	3300030738	Soil	MKTMFLTLAAVLGIALGTVSLTHSAYASNVQLYPPSNAADGRG
Ga0265460_107335983	3300030740	Soil	MKTVFLTLAAVLGLVLGTASVIPAAHASNVQVYPPSNSVG
Ga0265461_120589692	3300030743	Soil	MKSMFLTLAAVLGIALGTVSLTHSAYASNVQLYPPSNAADGRG
Ga0074037_17151651	3300030803	Soil	AMFLALAAVLGLAIGTASLIPAAHASRVYLYQPSDTTG
Ga0265766_10188862	3300030863	Soil	MKTMFLTLAAVLGLALGTASLTPAAHASNVYLYPPSNAAG
Ga0265766_10210042	3300030863	Soil	MKTMFLTLAAVLGLALGTASLSPAAHASSVYLHQPDSYGN
Ga0302314_112705741	3300030906	Palsa	MKTMFLTLAAVLGIALGTAALIPAAHASQVHLYPASDTTG
Ga0138296_17775352	3300030923	Soil	MKSMFLTLAAVLGIAIGTASLAPAQASQVYLYPPAGDLANG
Ga0138298_16228622	3300031015	Soil	MKTMFLTLAAILGIAIGTASLAPAANASQTYLYPPAGNLANG
Ga0302325_107980943	3300031234	Palsa	MKTMFLTLAALLGFAIGTASLIPAAHASRVYLYQPTDNGQG
Ga0302325_110426052	3300031234	Palsa	MKTMFVTLAAVLVLALGAASLAPAAHASKVYLYPPSTSAG
Ga0302325_113342482	3300031234	Palsa	MKTMFLTLAAVLGFAIGTASLIPAAHASRVYLYQPTDNGQG
Ga0302325_118169362	3300031234	Palsa	MKIMFLTMAAILGIALGTASLIPAAHASNVYLFPPSQSAG
Ga0302324_1004322161	3300031236	Palsa	MKSMFLTLAAVLGLALGTASMIPAAHASNVQLYPPSSVGGNG
Ga0302324_1004831504	3300031236	Palsa	MKTMFLTLAAVLGLALGTASLIPAAHASAVSLYQPSNAPG
Ga0302324_1005143922	3300031236	Palsa	MKAIFFTLAALMGLAIGTASLIPAAHASRVYLYQPTDNGQG
Ga0302324_1019728341	3300031236	Palsa	FLSLAAVLGLALGTASLIPAAHASSVYLYPPSTSAG
Ga0302320_119721001	3300031524	Bog	KTMFLTLAAVLGLALGSASIIPAAHASQVYLYPPSQSAG
Ga0302320_122357731	3300031524	Bog	LSTGRTMMKTMLLTLAAVLGVALGTASLIPAAHASQVYLYPPAENGQG
Ga0310111_1321112	3300031667	Soil	MKTMFLTLAAVLSIALGTVSLTQSAQASNVQLYPPSQATDGRG
Ga0310686_1009476523	3300031708	Soil	MKTMFLTLAAVLGIAIGTASLAPAQASQVYLYQPAGDLANG
Ga0310686_1021134422	3300031708	Soil	MKTVFLTLAAVLGLALGAASVIPAAHASNVQLYQPSNSVG
Ga0310686_1022918326	3300031708	Soil	MKTMFLTLAAVLGIALGTVSLTASAHATNVQLYPPSSVGGNG
Ga0310686_1080265126	3300031708	Soil	MKTMFLTLAAVLGLALGTGSLIPAAHASQVYLYPPAQNGQG
Ga0310686_1129976671	3300031708	Soil	MFLTLAAVLGLALGTASLIPAAHASNVQLYPPSQAPG
Ga0310686_11307787618	3300031708	Soil	MKTMFLALAAVLGLAIGTASLIPAAHASRVYLYQPSDTTG
Ga0310686_1133010462	3300031708	Soil	MKTIFLTLAAIVGLALGTASLIPAAHASNIQLYPPSEAPG
Ga0310686_1146539802	3300031708	Soil	MKTMFLTLAAVVGLALGTASLMPAAHASQVYLYQPTDHGQG
Ga0310686_1175361411	3300031708	Soil	TWRTTMKTMFLTLAAVLGLALGTACLTPAAHASNVQVYPPSSVGGNG
Ga0310686_1177218741	3300031708	Soil	MKTMFLTLAAVLGLAVGTTALAPAAHASQTYLYPPAGDLSNG
Ga0310686_1197713742	3300031708	Soil	MKTMFLTLAAVLGLALGTASLTQTAHASQVYLYPPSQSAG
Ga0311301_105863572	3300032160	Peatlands Soil	MKTMFLTLAAVVGLALGTASLIPAAHASQVYLYPPTQNGQG
Ga0311301_124044592	3300032160	Peatlands Soil	MKTMFLTLAAVVGLALGTASLTTAAQASQVYLYPPSQSAG
Ga0348332_111349692	3300032515	Plant Litter	MKTMFLTLAAVLGFAIGAASLSPAAHASKVYLYQPSTSAG
Ga0348332_113374282	3300032515	Plant Litter	MKTMFLTLAAVLGIALGTVSLTPAAHASNVQLYPPSSVGGNG
Ga0348332_119067151	3300032515	Plant Litter	MKTMFLALAAVLGFAIGTASLIPAAHASRVYLYQPTDTGNG
Ga0348332_124112142	3300032515	Plant Litter	MKTMLLALAAVLGIALGTASLIPVAHAASVYLYPPSESAG
Ga0334790_149701_435_557	3300033887	Soil	MKTMFLTLAAVLGIALGTASLIPAAHASTVSLYPPSQSAG
Ga0370515_0310239_10_135	3300034163	Untreated Peat Soil	MKTMFLMLAAVLGLAPDTASLIPAAHASQVHLYPPAQNGQG