NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F043495

Metagenome Family F043495

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F043495
Family Type Metagenome
Number of Sequences 156
Average Sequence Length 79 residues
Representative Sequence MPAPSPTPPTRRNEQHRCSHCGSRFEVWHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVDNLPGTEPETGAGD
Number of Associated Samples 125
Number of Associated Scaffolds 156

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 64.10 %
% of genes near scaffold ends (potentially truncated) 30.77 %
% of genes from short scaffolds (< 2000 bps) 77.56 %
Associated GOLD sequencing projects 114
AlphaFold2 3D model prediction Yes
3D model pTM-score0.64

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (96.154 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(12.180 % of family members)
Environment Ontology (ENVO) Unclassified
(31.410 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(53.846 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      
Full Alignment
Alignment of all the sequences in the family.
Sorting
Filter
Selection
Vis.elements
Color scheme
Extras
Export
Help

IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112.114.116.118.120.122.124.126.128.130.132.134.136.138.140.142.144.146.148.150.152
1INPhiseqgaiiFebDRAFT_1057661562
2INPhiseqgaiiFebDRAFT_1057676112
3F14TB_1035165412
4JGI25614J43888_100448183
5soilH2_102826992
6Ga0062593_1001389954
7Ga0062593_1003799971
8Ga0062590_1001493292
9Ga0063356_1059957422
10Ga0062592_1000776883
11Ga0062592_1001010782
12Ga0062592_1010958662
13Ga0062594_1006251612
14Ga0062594_1018661691
15Ga0062594_1022998091
16Ga0066683_101369532
17Ga0066680_100051007
18Ga0066685_108790312
19Ga0066675_110111691
20Ga0070690_1001971691
21Ga0068869_1010091382
22Ga0068868_1020684051
23Ga0070687_1000909672
24Ga0070688_1000700371
25Ga0070688_1001534913
26Ga0070694_1008743152
27Ga0070708_1001791573
28Ga0070708_1013839401
29Ga0070662_1001780021
30Ga0070662_1018581312
31Ga0068867_1019009531
32Ga0070706_1000786473
33Ga0070706_1003161422
34Ga0070707_1002297823
35Ga0070698_1000495981
36Ga0070698_1002111983
37Ga0070699_1009573402
38Ga0070672_1000929641
39Ga0070672_1001151691
40Ga0070686_1010052411
41Ga0070695_1012923221
42Ga0066701_104457541
43Ga0066695_106181052
44Ga0066661_101441292
45Ga0066692_101506122
46Ga0066698_100810102
47Ga0066699_100791244
48Ga0066705_102307142
49Ga0068857_1011831071
50Ga0066706_100961162
51Ga0068859_1000418825
52Ga0068864_1009766502
53Ga0068860_1019002371
54Ga0081455_108503521
55Ga0075368_102725861
56Ga0075364_104721132
57Ga0075367_107327372
58Ga0066665_106076032
59Ga0075428_1000068172
60Ga0075421_1000144703
61Ga0075421_1000326196
62Ga0075421_1012459262
63Ga0075433_102864432
64Ga0075425_1000899113
65Ga0075425_1022943382
66Ga0075434_1000157141
67Ga0075426_114289011
68Ga0075424_1003015712
69Ga0079216_105245142
70Ga0079216_110447382
71Ga0075435_1000439623
72Ga0099829_103755121
73Ga0075418_101390965
74Ga0075418_106202443
75Ga0105247_110226161
76Ga0066709_1000008757
77Ga0066709_1003894612
78Ga0066709_1038882041
79Ga0075423_102122003
80Ga0075423_102316161
81Ga0126374_117555542
82Ga0134080_104982031
83Ga0134128_116493422
84Ga0134124_102250012
85Ga0134124_107803662
86Ga0134122_120296402
87Ga0134121_108467971
88Ga0134123_120896231
89Ga0137391_101363163
90Ga0137389_112724421
91Ga0137372_104969612
92Ga0137366_109451551
93Ga0137371_111152821
94Ga0137361_119716921
95Ga0137390_100656733
96Ga0137390_102590281
97Ga0150984_1004683492
98Ga0137397_106602042
99Ga0157288_101013872
100Ga0157295_102838241
101Ga0137394_113744951
102Ga0137410_110949242
103Ga0126369_116809911
104Ga0157377_106169171
105Ga0132258_101379015
106Ga0132258_108925093
107Ga0132258_110976863
108Ga0132257_1002344633
109Ga0132257_1010151182
110Ga0132255_1015036792
111Ga0184623_100589484
112Ga0173481_105457492
113Ga0173482_103205092
114Ga0193744_10366572
115Ga0222622_100636493
116Ga0207682_103244331
117Ga0207710_106343081
118Ga0207680_107078821
119Ga0207645_110243812
120Ga0207684_109818822
121Ga0207646_100939903
122Ga0207681_115953951
123Ga0207701_104072431
124Ga0207711_112182872
125Ga0207689_100540183
126Ga0207676_118832411
127Ga0207675_1013891922
128Ga0209240_10264872
129Ga0209055_11146252
130Ga0209802_10084854
131Ga0209161_100761072
132Ga0209474_101739641
133Ga0209382_1000501014
134Ga0209382_100998193
135Ga0209382_102783382
136Ga0268266_110122651
137Ga0268264_110365573
138Ga0307311_102310031
139Ga0307282_102568012
140Ga0307290_102711431
141Ga0307305_103660402
142Ga0247825_103611752
143Ga0307296_107671742
144Ga0307312_102749443
145Ga0307312_107388851
146Ga0307497_100069754
147Ga0307497_101078072
148Ga0307468_1025725721
149Ga0310893_101351571
150Ga0310900_106714221
151Ga0310885_103244972
152Ga0307472_1016442971
153Ga0307472_1019821121
154Ga0307472_1022733152
155Ga0214472_100564002
156Ga0247830_106530162
Powered by MSAViewer


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 2.80%    β-sheet: 28.04%    Coil/Unstructured: 69.16%
Feature Viewer
Position :
0
Zoom :
x 1
+ Add Multiple Variants

Enter the variants

Position

Original

Variant

Get Predictions
Get Predictions

Enter the variants

Position

Original

Variant

10203040506070MPAPSPTPPTRRNEQHRCSHCGSRFEVWHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVDNLPGTEPETGAGDSequenceα-helicesβ-strandsCoilSS Conf. scoreDisordered Regions
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer

WebGL does not seem to be available.

This can be caused by an outdated browser, graphics card driver issue, or bad weather. Sometimes, just restarting the browser helps. Also, make sure hardware acceleration is enabled in your browser.

For a list of supported browsers, refer to http://caniuse.com/#feat=webgl.

Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.64
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Visualization
All Organisms
Unclassified
96.2%3.8%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts

Associated Scaffolds





 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Groundwater Sediment
Groundwater Sediment
Soil
Vadose Zone Soil
Terrestrial Soil
Tropical Forest Soil
Grasslands Soil
Soil
Agricultural Soil
Sugarcane Root And Bulk Soil
Soil
Grasslands Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Hardwood Forest Soil
Soil
Soil
Soil
Corn, Switchgrass And Miscanthus Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Rhizosphere
Corn Rhizosphere
Tabebuia Heterophylla Rhizosphere
Switchgrass Rhizosphere
Arabidopsis Thaliana Rhizosphere
Miscanthus Rhizosphere
Populus Endosphere
Populus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Switchgrass Rhizosphere
Miscanthus Rhizosphere
Corn Rhizosphere
Avena Fatua Rhizosphere
9.0%7.7%3.8%5.8%12.2%3.2%3.2%7.7%3.2%3.8%3.8%11.5%
Download SVG
Download PNG
Download CSV
Powered by ApexCharts



Associated Samples


Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
INPhiseqgaiiFebDRAFT_10576615623300000364SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTIEVSCPCCHAXTAVSLPRGAEKDLRVEQSPGSEPETGVVD*
INPhiseqgaiiFebDRAFT_10576761123300000364SoilMPAXXPTXPTRRNEQXRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGVGD*
F14TB_10351654123300001431SoilMPAVPPTXXTTRRNEQHRCAKCGSRFEVWXXXXXLETYVTVEVSCPCCHARTAVSLPRGAEKDLRVNNLPGTEPETGVGD*
JGI25614J43888_1004481833300002906Grasslands SoilTTRRNEQHRCAHCGSRFEVWHAADPLESYVTVEVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGVSG*
soilH2_1028269923300003324Sugarcane Root And Bulk SoilMPAPKPEGPTRRNEQHRCAHCGSRFEVWHAADPLEDHVTADVRCPCCGAQTPVSVPRSATKDMRVENLPGTEPETGVVD*
Ga0062593_10013899543300004114SoilVVYSGFMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0062593_10037999713300004114SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCQARTAVSLPRGAEKDLRVNN
Ga0062590_10014932923300004157SoilMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSAQNDLRVDPLPGPEPDTGAGD*
Ga0063356_10599574223300004463Arabidopsis Thaliana RhizosphereMPAVPPTAPIRRNEQHRCAHCGSRFEVWHAADPLEAYVTVEVSCPCCHAKTAVSLPRGAEKDLRVDNLPGTEPETGVG
Ga0062592_10007768833300004480SoilMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0062592_10010107823300004480SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCQARTAVSLPRGAEKDLRVNNLPGTEPETGVGD*
Ga0062592_10109586623300004480SoilMADDSPSSGTRRNEQHRCSHCGSRFEVWLSGDPIEAPVPVDVRCPCCNGSQTLSVPRSSANDLRGENVPGPEPETGGGD*
Ga0062594_10062516123300005093SoilMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0062594_10186616913300005093SoilMPAPAPTPPTRRNEQHRCSHCGSRFEVTHAADPLESYVTVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0062594_10229980913300005093SoilMADASPGSRPRRNEQHRCSHCGSRFEIWHTADPIGGSVQVEVRCPCCGGARTVSLPKGAEKDLRVDPMPGPEPDTGAGD*
Ga0066683_1013695323300005172SoilVGAVVVYSGFMADSVSPGPQAQRNEQHRCTHCGSRFEVWHTGDPIGAAVQVDVRCPCCGGAHTVSVPRGAEKDLRVEPLPGPEPETGVVD*
Ga0066680_1000510073300005174SoilMASPPAGPRPRRNEQHRCARCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTVPRGAEKDLRVDNLPGPEPETGVVD*
Ga0066685_1087903123300005180SoilSPAPSRGAVLSYIGFMPDTQPASMAARRNEQHRCPHCGSRFEVWHSADPVEPAADVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD*
Ga0066675_1101116913300005187SoilMPAVPPDATIRRNEQHRCTRCRSRFEIWHTADPLEPHVTLEVRCPCCGATTPVSLPRSADKDLRVDILPGPEPETGVVD*
Ga0070690_10019716913300005330Switchgrass RhizosphereMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD
Ga0068869_10100913823300005334Miscanthus RhizosphereMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD*
Ga0068868_10206840513300005338Miscanthus RhizosphereMPAPSPTPPTRRNEQHRCSHCGSRFEVWHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVDNLPGTEPETGAGD*
Ga0070687_10009096723300005343Switchgrass RhizosphereMPDTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0070688_10007003713300005365Switchgrass RhizosphereGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0070688_10015349133300005365Switchgrass RhizospherePTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0070694_10087431523300005444Corn, Switchgrass And Miscanthus RhizosphereMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0070708_10017915733300005445Corn, Switchgrass And Miscanthus RhizosphereMPALPPKSTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQARTPVSLPRGAEKDLHVDNLPGPEPETGTSG*
Ga0070708_10138394013300005445Corn, Switchgrass And Miscanthus RhizospherePRLLYSGFMPALPPKPTRRNEQHRCSRCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEQDLRVDNLPGTEPETGTSG*
Ga0070662_10017800213300005457Corn RhizosphereVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD*
Ga0070662_10185813123300005457Corn RhizosphereRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0068867_10190095313300005459Miscanthus RhizosphereRNEQHRCSQCGSRFEVWHRADPIEASVQVEVRCPCCGGAHSVSLPQGAEKDLRVEPLPGPEPETGAGD*
Ga0070706_10007864733300005467Corn, Switchgrass And Miscanthus RhizosphereMASPPVGPRPRRNEQHRCAHCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTVPRGAEKDLRVDNLPGPEPETGVVD*
Ga0070706_10031614223300005467Corn, Switchgrass And Miscanthus RhizosphereMPALPPKPTRRNEQHRCSRCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEQDLRVDNLPGTEPETGTSG*
Ga0070707_10022978233300005468Corn, Switchgrass And Miscanthus RhizosphereERGIRRYSGLMPSPPVGPRPRRNEQHRCAHCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTVPRGAEKDLRVDNLPGPEPETGVVD*
Ga0070698_10004959813300005471Corn, Switchgrass And Miscanthus RhizosphereSPPVGPRPRRNEQHRCAHCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTVPRGAEKDLRVDNLPGPEPETGVVD*
Ga0070698_10021119833300005471Corn, Switchgrass And Miscanthus RhizosphereMPALPPKPTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQARTPVSLPRGAEKDLHVDNLPGPEPETGTSG*
Ga0070699_10095734023300005518Corn, Switchgrass And Miscanthus RhizosphereMPALPSKPTRRNEQHRCSHCGSRFEVWHAADPLGSYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGTSG*
Ga0070672_10009296413300005543Miscanthus RhizosphereSGFMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0070672_10011516913300005543Miscanthus RhizosphereADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0070686_10100524113300005544Switchgrass RhizosphereMPAPAPTPPTRRNEQHRCSHCGSRFEVTHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0070695_10129232213300005545Corn, Switchgrass And Miscanthus RhizosphereRRAGGLHGPPGRVLSLSATVFGVVVYSGFMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0066701_1044575413300005552SoilLSYIGFMPDTQPASMAARRNEQHRCPHCGSRFEVWHSADPVEPAVDVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD*
Ga0066695_1061810523300005553SoilVGAVVVYSGFMADSVSPDPRARRNEQHRCTHCGSRFEVWHTGDPIGAAVQVDVRCPCCGGAHTVSVPRGAEKDLRVEPLPGPEPETGV
Ga0066661_1014412923300005554SoilMAARRNEQHRCPHCGSRFEVWHSADPVEPAVDVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD*
Ga0066692_1015061223300005555SoilMASPPAGPRPRRNEQHRCARCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTLPRGAEKDLRVDNLPGPEPETGVVD*
Ga0066698_1008101023300005558SoilMAARRNEQHRCPHCGSRFEVWHSADPVEPAADVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD*
Ga0066699_1007912443300005561SoilMAADPPPSSPPRRNEQHRCAHCGSRFEVWHTADPLGTYVAVEVPCPCCGAPTAVSVPRGAEKDLRVDPLPGTEPETGVVD*
Ga0066705_1023071423300005569SoilMAAEQPPSSPPRRNEQHRCAHCGSRFEVWHTADPLGTYVAVEVPCPCCGAPTAVSVPRGAEKDLRVDPLPGTEPETGVVD*
Ga0068857_10118310713300005577Corn RhizosphereQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0066706_1009611623300005598SoilMPALPPKTTRRNEQHRCAHCGSRFEVWHAADPLEAYVTVDVRCPCCHAQTPVSLPRSAEKDLRVENLPGMEPETGVVD*
Ga0068859_10004188253300005617Switchgrass RhizosphereMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKNLRVENLPGTEPETGVGD*
Ga0068864_10097665023300005618Switchgrass RhizosphereMPAVPPTTTPTRRNEQHRCAKCGSRVEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0068860_10190023713300005843Switchgrass RhizosphereLSLSATVFGVLVYSGFMPDTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0081455_1085035213300005937Tabebuia Heterophylla RhizosphereMPAVPPTPTPTRRNEQHRCSKCGSRFEVWHTADPLGSYVTLEVSCPCCHAKTPVSLPRGAEKDLRVDNLPGAEPDTGVVD*
Ga0075368_1027258613300006042Populus EndospherePTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0075364_1047211323300006051Populus EndosphereMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPE
Ga0075367_1073273723300006178Populus EndosphereTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0066665_1060760323300006796SoilMAAEQPPSSPPRRNEQHRCAHCGSRFEVWHTADPLGTYVAVEVPCPCCGAPTAVSVPRGAEKDLRVDPLPGTEPETGVV
Ga0075428_10000681723300006844Populus RhizosphereMTDSAAPARPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSLPASARNDLRVDPLPGPEPDTGAGD*
Ga0075421_10001447033300006845Populus RhizosphereMGDLPPTPPTRRNEQHRCAHCGSRFEIWHAADTLGTYVSVDVSCPCCHAQTAVSLPRGAEKDLRVNNLPGTEPDTGVVD*
Ga0075421_10003261963300006845Populus RhizosphereMPAVPPTAPTRRNEQHRCAHCGSRFEVWHTADPLGSYVAIDVSCPCCHAKTSVSLPRGADKDLRVDNLPGAEPDTGVVD*
Ga0075421_10124592623300006845Populus RhizosphereMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLEAYVTVEVSCPCCQARTAVSLPRGAEKDLRVNNLPGTEPETGVGD*
Ga0075433_1028644323300006852Populus RhizosphereMPALPPKPTRRNEQHRCSHCGSRFEVWHAADPLGSYVTVEVRCPCCHAQTPVSLPRGAEQDLRVDNLPGTEPETGTSG*
Ga0075425_10008991133300006854Populus RhizosphereMPAPSSTPHTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0075425_10229433823300006854Populus RhizosphereVYSGSMADASPGSRPRRNEQHRCSHCGSRFEIWHTADPIGGSVQVEVRCPCCGGARTVSLPKGAEKDLRVDPMPGPEPDTGAGD*
Ga0075434_10001571413300006871Populus RhizosphereMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGA
Ga0075426_1142890113300006903Populus RhizosphereSPTTHTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGVGD*
Ga0075424_10030157123300006904Populus RhizosphereMPAPSPTPPTRRNEQHRCSHCGSRFEVWHAADPLESYVAVEVSCPCCHAKTAVTLPRGAEKDLRVDNLPGTEPETGAGD*
Ga0079216_1052451423300006918Agricultural SoilMADAPAVSRAPRNEQHRCTHCRSRFEVWHTGDPIEAAVQVDVRCPCCGGSHSVSVPRSAAKDLRVENLPGPEPETGAGD*
Ga0079216_1104473823300006918Agricultural SoilMGDLPPTPPTRRNEQHRCAHCGSRFEIWHAADTLGTYVSIDVSCPCCHAKTAVSLPRGAEKDLRVNNLPGTEPETGVVD*
Ga0075435_10004396233300007076Populus RhizosphereMPAPSSTPLTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGAGD*
Ga0099829_1037551213300009038Vadose Zone SoilMASPPAGSRPRRNEQHRCAHCGSRFEVWHTADPLADHATIEVRCPCCGAATAISVPRGAEKDLRVDNLPGPEPDTGVVD*
Ga0075418_1013909653300009100Populus RhizosphereMTDTASAARPLRNEQHRCSHCGARFEVWHRADPIEPSVEVQVRCPCCSGTHTVSLPRGAEKDMRVDPAPGPEPETGVGD*
Ga0075418_1062024433300009100Populus RhizosphereRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD*
Ga0105247_1102261613300009101Switchgrass RhizosphereMPAVPPTTTPTRRNEQHRCSHCGSRFEVTHAADPLESYVTVEVSCPCCHAKTAVSLPRGAEKDLRVENLQ
Ga0066709_10000087573300009137Grasslands SoilMPDTQPASMAARRNEQHRCPHCGSRFEVWHSADPVEPAVDVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD*
Ga0066709_10038946123300009137Grasslands SoilVGAVVVYSGFMADSVSPGPRARRNEQHRCTHCGSRFEVWHTGDPIGAAVQVDVRCPCCGGAHTVSVPRGAEKDLRVEPLPGPEPETGVVD*
Ga0066709_10388820413300009137Grasslands SoilMDRLERVYHGDMTVTPAARTRRNEQHRCAHCGSRFEVWHAGDPLAEYLTVEVRCPCCGATTPVAVPRGAERDLRVENLPGPEPETGVID*
Ga0075423_1021220033300009162Populus RhizosphereMPVLPPKPTRRNEQHRCSHCGSRFEVWHAADPLGSYVTVEVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGTSG*
Ga0075423_1023161613300009162Populus RhizosphereDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0126374_1175555423300009792Tropical Forest SoilMPALPTSTPIRRNEQHRCAHCGSRFEVWHAADPLEPHVTVEVRCPCCQAPTPVSLPRGADRDLRVENLPGPEPETGVVD*
Ga0134080_1049820313300010333Grasslands SoilMPALPTKPTRRNEQHRCSQCGSRFEVWHAADPLEAYVTVDVRCPCCHAQTPVSLPRSAEKDLRVENLPGTEPETGVGG*
Ga0134128_1164934223300010373Terrestrial SoilVRRRAGGLHGPPGRVLSLSATVLGIVVYSGFMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSAQNDLRVDPLPGPEPDTGAGD*
Ga0134124_1022500123300010397Terrestrial SoilMPAPSPTPPTRRNEQHRCSHCGSRFEVWHAADPLESYVAVEVSCPCCHAKTAVTLPRGAEKDLRVNNLPGTEPETGAGD*
Ga0134124_1078036623300010397Terrestrial SoilLGIVVYSGFMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0134122_1202964023300010400Terrestrial SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAKTPVSLPKGAEKDLRVDPLPGTEPETGVVD*
Ga0134121_1084679713300010401Terrestrial SoilFMPAVPPTTTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0134123_1208962313300010403Terrestrial SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAPTAVSLPRGAEKDLRVTNLPGTE
Ga0137391_1013631633300011270Vadose Zone SoilMPALPLKPTRRNEQHRCSHCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGTSG*
Ga0137389_1127244213300012096Vadose Zone SoilMAFPPVGPRSRRNEQHRCAHCGSRFEVWHVADPMAEYVAVEVRCPCCGAATPVSLPRGAEKDLRVENLPGTEPETG
Ga0137372_1049696123300012350Vadose Zone SoilMPALPPPPGGRRNEQHRCSQCGSRFEVWHAADPLESYVTVDVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGVVD*
Ga0137366_1094515513300012354Vadose Zone SoilMPALPTKPTRRNEQHRCSQCGSRFEVWHAADPLESYVTVDVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGVVD*
Ga0137371_1111528213300012356Vadose Zone SoilMPALPTKPTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGVGG*
Ga0137361_1197169213300012362Vadose Zone SoilMPLELAGSRPRRNEQHRCAHCHSRFEVWHTADPLADHATIEVRCPCCGAATAISVPRGAEKDLRVDNLPGPEPETGVVD*
Ga0137390_1006567333300012363Vadose Zone SoilMPALPLKPTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGTSG*
Ga0137390_1025902813300012363Vadose Zone SoilMASPPVGPRTRRNEQHRCAHCGSRFEVWHTGDPLADHTAIEVRCPCCGASTPVTVPRGAEKDLRVENLPGPEPETGVVD*
Ga0150984_10046834923300012469Avena Fatua RhizosphereLGSCLRFPRNVPIRRNEQHRCAHCGSRFEVWHAADPLQPHVTVEVRCPCCTQATPVSLPQGAEKDLRVENLPGTEPETGTVD*
Ga0137397_1066020423300012685Vadose Zone SoilMPALPPKPTLRNEQHRCSQCGSRFEVWHSADPLETYVTVEVRCPCCQAQTPVSLPRGAEKDLRVENLPGSEPETGVGG*
Ga0157288_1010138723300012901SoilMPAQAPTPPTRRNEQHRCSHCGSRFEVWHAADPLEAYVAVEVSCPCCQAKTAVSLPRGAEKDLRVNNLPGSEPETGVVD*
Ga0157295_1028382413300012906SoilMPAAPKTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD*
Ga0137394_1137449513300012922Vadose Zone SoilLPPKPTLRNEQHRCSQCGSRFEVWHSADPLETYVTVEVSCPCCHQHTPVSLPRGADRDLRVENLPGTEPETGVVD*
Ga0137410_1109492423300012944Vadose Zone SoilMPALPTKPTRRNEQHRCSHCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEKDLRVENLPGTEPETGVGG*
Ga0126369_1168099113300012971Tropical Forest SoilMATVPSPPRRNEQHRCAHCGSRFEVWHTADPLADHVTIEVRCPCCGTQTPLSLPRGADKDLRVDNLPGPEPETGVVD*
Ga0157377_1061691713300014745Miscanthus RhizosphereLSATVFGVVVYSGFMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSARNDLRVDPLPGPEPDTGAGD*
Ga0132258_1013790153300015371Arabidopsis RhizosphereMADSPSADRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVEALPGPEPDTGAGD*
Ga0132258_1089250933300015371Arabidopsis RhizosphereMADASPARPLRNEQHRCSHCGSRFEVWHRADPIEPAVEVQVRCPCCGGTHTVSLPRGAQKDMRVDPLPGPEPETGVGD*
Ga0132258_1109768633300015371Arabidopsis RhizosphereMPAVPPTSTPTRRNEQHRCAKCGSRFEVWHAADPLENYVTIEVSCPCCHAQTAVSLPRGAEKDLRVDNLPGTEPETGAGD*
Ga0132257_10023446333300015373Arabidopsis RhizosphereMPAVPPTSTPTRRNEQHRCAKCGSRFEVWHAADPLENYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD*
Ga0132257_10101511823300015373Arabidopsis RhizosphereMADAPAARPLRNEQHRCSHCGSRFEIWHTADPIGGSVQVEVRCPCCGGARTVSLPKGAEKDLRVDPMPGPEPDTGAGD*
Ga0132255_10150367923300015374Arabidopsis RhizosphereMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGAEKDLRVDNLPGTEPETGAGD*
Ga0184623_1005894843300018056Groundwater SedimentMGYSGIMSDAGPPSPPPRRNEQHRCTHCNSRFEVWHAADPLEAYVAVEVRCPCCGAATPVSLPRSAEKDLRVEPLPGTEPETGGGD
Ga0173481_1054574923300019356SoilMPAAPKTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD
Ga0173482_1032050923300019361SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVTHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPE
Ga0193744_103665723300019874SoilMSALPPTPPTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGSEPETGAGD
Ga0222622_1006364933300022756Groundwater SedimentMAALPPKPTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGTSG
Ga0207682_1032443313300025893Miscanthus RhizosphereMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0207710_1063430813300025900Switchgrass RhizosphereVRRAREARAGSLEHSGESRQHKQEQHRCSHCGSRFEVWHAADPLEAYVAVEVSCPCCQAKTAVSLPRGAEKDLRVNNLPGSEPETGVVD
Ga0207680_1070788213300025903Switchgrass RhizosphereTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0207645_1102438123300025907Miscanthus RhizosphereMPAPAPTPPTRRNEQHRCSHCGSRFEVTHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVDNLPGTEPETGAGD
Ga0207684_1098188223300025910Corn, Switchgrass And Miscanthus RhizosphereMASPPVGPRPRRNEQHRCAHCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTVPRGAEKDLRVDNLPGPEPETGVVD
Ga0207646_1009399033300025922Corn, Switchgrass And Miscanthus RhizosphereMPALPPKPTRRNEQHRCSRCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEQDLRVDNLPGTEPETGTSG
Ga0207681_1159539513300025923Switchgrass RhizosphereMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLETYVTVEVSCPCCHAQTAVSLPRGAEKDLRVNNLPGMEPETGAGD
Ga0207701_1040724313300025930Corn, Switchgrass And Miscanthus RhizospherePGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGTHTVSVPRSARNDLRVDPLPGPEPDTGAGD
Ga0207711_1121828723300025941Switchgrass RhizosphereMADTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGSHTVSVPRSAQNDLRVDPLPGPEPDTGAGD
Ga0207689_1005401833300025942Miscanthus RhizosphereMPAPSPTPPTRRNEQHRCAHCGSRFEVSHAADPLESYVAVEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0207676_1188324113300026095Switchgrass RhizospherePPPTTPTRRNEQHRCAKCGSRVEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0207675_10138919223300026118Switchgrass RhizosphereQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD
Ga0209240_102648723300026304Grasslands SoilMPALPLKPTRRNEQHRCSHCGSRFEVWHAADPLEAYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGTSG
Ga0209055_111462523300026309SoilMAARRNEQHRCPHCGSRFEVWHSADPVEPAVDVEVRCPCCGGPHVVSLPRGAEKDMRVDPLPGPEPDTGVVD
Ga0209802_100848543300026328SoilMASPPAGPRPRRNEQHRCARCGSRFEVWHTGDPLAEHTAIEVRCPCCGASTPVTLPRGAEKDLRVDNLPGPEPETGVVD
Ga0209161_1007610723300026548SoilMAAEQPPSSPPRRNEQHRCAHCGSRFEVWHTADPLGTYVAVEVPCPCCGAPTAVSVPRGAEKGLRVDPLPGTEPETGVVD
Ga0209474_1017396413300026550SoilMPAVPPDATIRRNEQHRCTRCRSRFEVWHTADPLEPHVTLEVRCPCCGAPTSVSLPRGADQDLRVDNLPGPEPETGVVD
Ga0209382_10005010143300027909Populus RhizosphereMPAVPPTAPTRRNEQHRCAHCGSRFEVWHTADPLGSYVAIDVSCPCCHAKTSVSLPRGADKDLRVDNLPGAEPDTGVVD
Ga0209382_1009981933300027909Populus RhizosphereMGDLPPTPPTRRNEQHRCAHCGSRFEIWHAADTLGTYVSVDVSCPCCHAQTAVSLPRGAEKDLRVNNLPGTEPDTGVVD
Ga0209382_1027833823300027909Populus RhizosphereMPAVPPTPTPTRRNEQHRCAKCGSRFEVWHAADPLEAYVTVEVSCPCCQARTAVSLPRGAEKDLRVNNLPGTEPETGVGD
Ga0268266_1101226513300028379Switchgrass RhizosphereMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPE
Ga0268264_1103655733300028381Switchgrass RhizosphereLSLSATVFGVLVYSGFMPDTPGSDRPRRNEQHRCTHCGSRFEVWHTADPMEAPVQLDVRCPCCGGAHTVSVPRSARNDLRVDPLPGPEPDTGAGD
Ga0307311_1023100313300028716SoilMPAPSPTPRTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVNNLQGTEPETGVGD
Ga0307282_1025680123300028784SoilMPAPSPTPRTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEQDLRVENLQGTEPETGVGD
Ga0307290_1027114313300028791SoilMTDTPPPSPRPRRNEQHRCTHCGSRFEVWHTGDPIAPSVQIDVRCPCCGGSHTVSVPRGAERDLRVDPLPGPEPETGGGD
Ga0307305_1036604023300028807SoilMPALPPKPTLRNEQHRCSQCGSRFEVWHSADPLETYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGVSG
Ga0247825_1036117523300028812SoilSSTSQPPRERRNEQHRCTHCHSRFEVFHTGDPLESHVEVEVTCPCCHGKHTISLPRGAEKGMTVENLPGPEPETGTAD
Ga0307296_1076717423300028819SoilGARAAAHPVPAREVPALAPARPRLLYSGFMAALPPKPTRRNEQHRCSHCGSRFEVWHAADPLESYVTVEVRCPCCQAQTAVSLPRGAEKDLRVDNLPGTEPETGTSG
Ga0307312_1027494433300028828SoilEQHRCSQCGSRFEVWHSADPLETYVTVEVRCPCCQAQTPVSLPRGAEKDLRVDNLPGTEPETGVSG
Ga0307312_1073888513300028828SoilMTDTPPPSPRPRRNEQHRCTHCGSRFEVWHTGDPIAPSVQVDVRCPCCGGSHTVSVPRGAERDLRVDPLPGPEPETGGGD
Ga0307497_1000697543300031226SoilMPAVPPTTTPTRRNEQHRCAKCGSRFEVWHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0307497_1010780723300031226SoilMPAPSPTPPTRRNEQHRCSHCGSRFEVSHAADPLESYVAVEVSCPCCHAKTAVSLPRGAEKDLRVENLQGTEPETGVGD
Ga0307468_10257257213300031740Hardwood Forest SoilMPAVPPTPTPTRRNEQHRCAKCGSRFEVGHAADPLETYVTIEVNCPCCHAPTPVSLPRGAEKDLSVENLPGTEPETGVGD
Ga0310893_1013515713300031892SoilMPAVPPTTTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTE
Ga0310900_1067142213300031908SoilNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0310885_1032449723300031943SoilMPAAPKTPTPTRRNEQHRCAKCGSRFEVSHTADPLDAYVTIEVSCPCCHAQTAVSLPRGADKDLRVENLPGTEPETGVGD
Ga0307472_10164429713300032205Hardwood Forest SoilMPAVPPTPTPTRRNEQHRCAHCGSRFEVSHAADPLESYVAVEVSCPCCHAQTAVSLPRGAEKGLRVENLQGTEPETGVGD
Ga0307472_10198211213300032205Hardwood Forest SoilDATIRRNEQHRCAHCHSRFEVWHVADPLEPHVTLEIRCPCCGASTPVSLPRGADKDLRVENLPGPEPETGVVD
Ga0307472_10227331523300032205Hardwood Forest SoilMASTPSVRPRRNEQHRCAHCHSRFEVWHTADPLAEHGTIEVRCPCCGVATPISVPRGAEKDLRVDNLPGPEPETGVVD
Ga0214472_1005640023300033407SoilMADVPAASRPRRNEQHRCTHCGSRFEVWHTGDPIEAAVQVDVRCPCCGGAHTVSVPRGAEKDLRVEPLPGPEPETGVGD
Ga0247830_1065301623300033551SoilMSSTSQPPRERRNEQHRCTHCHSRFEVFHTGDPLESHVEVEVTCPCCHGKHTISLPRGAEKGMTVENLPGPEPETGTAD


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.