Metagenome Family F042396

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F042396
Family Type	Metagenome
Number of Sequences	158
Average Sequence Length	49 residues
Representative Sequence	MRNLLIGLVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGNR
Number of Associated Samples	110
Number of Associated Scaffolds	158

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	49.37 %
% of genes near scaffold ends (potentially truncated)	32.28 %
% of genes from short scaffolds (< 2000 bps)	87.34 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (84.810 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (16.456 % of family members)
Environment Ontology (ENVO)	Unclassified (53.797 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (67.722 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 42.86% β-sheet: 5.19% Coil/Unstructured: 51.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 158 Family Scaffolds
PF04366	Ysc84	53.80
PF11127	DUF2892	1.90
PF06210	DUF1003	1.90
PF00326	Peptidase_S9	1.90
PF09994	DUF2235	1.90
PF13229	Beta_helix	1.27
PF14592	Chondroitinas_B	1.27
PF11138	DUF2911	0.63
PF02754	CCG	0.63
PF12697	Abhydrolase_6	0.63
PF02637	GatB_Yqey	0.63
PF13365	Trypsin_2	0.63
PF01641	SelR	0.63
PF13683	rve_3	0.63
PF07859	Abhydrolase_3	0.63
PF12704	MacB_PCD	0.63

COG ID	Name	Functional Category	% Frequency in 158 Family Scaffolds
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	53.80
COG4420	Uncharacterized membrane protein	Function unknown [S]	1.90
COG0064	Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit	Translation, ribosomal structure and biogenesis [J]	0.63
COG0229	Peptide methionine sulfoxide reductase MsrB	Posttranslational modification, protein turnover, chaperones [O]	0.63
COG0247	Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF	Energy production and conversion [C]	0.63
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.63
COG1610	Uncharacterized conserved protein YqeY, may have tRNA amino acid amidase activity	General function prediction only [R]	0.63
COG2048	Heterodisulfide reductase, subunit B	Energy production and conversion [C]	0.63
COG2511	Archaeal Glu-tRNAGln amidotransferase subunit E, contains GAD domain	Translation, ribosomal structure and biogenesis [J]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	84.81 %
Unclassified	root	N/A	15.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	84.81 %
Unclassified	root	N/A	15.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	84.81 %
Unclassified	root	N/A	15.19 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	37.34 %
Unclassified	root	N/A	15.19 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.43 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.63 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	31.65 %
Unclassified	root	N/A	15.19 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.16 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.27 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.01 %
Unclassified	root	N/A	15.19 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.27 %
Acidobacteria bacterium 13_1_40CM_65_14	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	0.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.01 %
Unclassified	root	N/A	15.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.53 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	1.27 %
Acidobacteria bacterium 13_1_40CM_65_14	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	0.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.01 %
Unclassified	root	N/A	15.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.53 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	1.27 %
Acidobacteria bacterium 13_1_40CM_65_14	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	0.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.01 %
Unclassified	root	N/A	15.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.53 %
Desulfonema	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema	1.27 %
Acidobacteria bacterium 13_1_40CM_65_14	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	0.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	31.01 %
Unclassified	root	N/A	15.19 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.53 %
Desulfonema limicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	1.27 %
Acidobacteria bacterium 13_1_40CM_65_14	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	0.63 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig573118	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300000956\|JGI10216J12902_103807780	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300000956\|JGI10216J12902_104554364	Not Available	502	Open in IMG/M
3300000956\|JGI10216J12902_106958883	Not Available	598	Open in IMG/M
3300000956\|JGI10216J12902_115261568	Not Available	559	Open in IMG/M
3300004022\|Ga0055432_10062679	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	912	Open in IMG/M
3300004114\|Ga0062593_102219841	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	615	Open in IMG/M
3300005093\|Ga0062594_100703746	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300005205\|Ga0068999_10081064	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300005328\|Ga0070676_10371385	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300005331\|Ga0070670_100007349	All Organisms → cellular organisms → Bacteria → Proteobacteria	9350	Open in IMG/M
3300005333\|Ga0070677_10054455	All Organisms → cellular organisms → Bacteria	1630	Open in IMG/M
3300005333\|Ga0070677_10104843	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005334\|Ga0068869_100194719	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300005334\|Ga0068869_101019947	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300005337\|Ga0070682_101481245	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005338\|Ga0068868_100760991	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300005340\|Ga0070689_100151405	All Organisms → cellular organisms → Bacteria	1871	Open in IMG/M
3300005353\|Ga0070669_100053549	All Organisms → cellular organisms → Bacteria	2954	Open in IMG/M
3300005353\|Ga0070669_100107118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2117	Open in IMG/M
3300005353\|Ga0070669_101402998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	606	Open in IMG/M
3300005354\|Ga0070675_100450016	Not Available	1155	Open in IMG/M
3300005364\|Ga0070673_100126961	All Organisms → cellular organisms → Bacteria → Proteobacteria	2135	Open in IMG/M
3300005364\|Ga0070673_100440089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1171	Open in IMG/M
3300005438\|Ga0070701_10938278	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005455\|Ga0070663_100007772	All Organisms → cellular organisms → Bacteria → Proteobacteria	6550	Open in IMG/M
3300005459\|Ga0068867_100925271	Not Available	786	Open in IMG/M
3300005466\|Ga0070685_11287527	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300005471\|Ga0070698_102000932	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300005543\|Ga0070672_101006630	All Organisms → cellular organisms → Bacteria	738	Open in IMG/M
3300005564\|Ga0070664_100337679	All Organisms → cellular organisms → Bacteria	1368	Open in IMG/M
3300005617\|Ga0068859_100333885	All Organisms → cellular organisms → Bacteria	1610	Open in IMG/M
3300005617\|Ga0068859_100738055	All Organisms → cellular organisms → Bacteria	1074	Open in IMG/M
3300005618\|Ga0068864_101244329	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300005618\|Ga0068864_102689624	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300005719\|Ga0068861_100493062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1106	Open in IMG/M
3300005719\|Ga0068861_101417466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	679	Open in IMG/M
3300005840\|Ga0068870_10035743	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300005840\|Ga0068870_10224393	Not Available	1152	Open in IMG/M
3300005841\|Ga0068863_102675528	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	508	Open in IMG/M
3300006046\|Ga0066652_101831479	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300006237\|Ga0097621_100313698	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300006358\|Ga0068871_102214569	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300006755\|Ga0079222_12352720	Not Available	533	Open in IMG/M
3300006880\|Ga0075429_100997631	All Organisms → cellular organisms → Bacteria	732	Open in IMG/M
3300006881\|Ga0068865_101041263	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	718	Open in IMG/M
3300006894\|Ga0079215_10046852	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1653	Open in IMG/M
3300006918\|Ga0079216_11397142	All Organisms → cellular organisms → Bacteria	579	Open in IMG/M
3300007076\|Ga0075435_100860169	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300009094\|Ga0111539_11350650	Not Available	827	Open in IMG/M
3300009094\|Ga0111539_12111021	Not Available	654	Open in IMG/M
3300009098\|Ga0105245_11902812	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	648	Open in IMG/M
3300009100\|Ga0075418_10321466	All Organisms → cellular organisms → Bacteria	1651	Open in IMG/M
3300009100\|Ga0075418_12763203	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300009148\|Ga0105243_12978779	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	514	Open in IMG/M
3300009162\|Ga0075423_11784523	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300009177\|Ga0105248_10812170	All Organisms → cellular organisms → Bacteria → Acidobacteria	1055	Open in IMG/M
3300009610\|Ga0105340_1023465	All Organisms → cellular organisms → Bacteria	2399	Open in IMG/M
3300010376\|Ga0126381_102166692	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300010399\|Ga0134127_12744538	Not Available	572	Open in IMG/M
3300010403\|Ga0134123_13222094	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300011438\|Ga0137451_1245431	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300012041\|Ga0137430_1122399	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300012212\|Ga0150985_117856028	All Organisms → cellular organisms → Bacteria → Acidobacteria	2091	Open in IMG/M
3300012891\|Ga0157305_10080417	Not Available	766	Open in IMG/M
3300012892\|Ga0157294_10196468	All Organisms → cellular organisms → Bacteria	591	Open in IMG/M
3300013308\|Ga0157375_12204558	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	656	Open in IMG/M
3300013308\|Ga0157375_12651804	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300014325\|Ga0163163_10842184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	980	Open in IMG/M
3300014326\|Ga0157380_10001264	All Organisms → cellular organisms → Bacteria	16407	Open in IMG/M
3300014326\|Ga0157380_10333926	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300014969\|Ga0157376_11194965	All Organisms → cellular organisms → Bacteria	788	Open in IMG/M
3300015374\|Ga0132255_100058375	All Organisms → cellular organisms → Bacteria	5068	Open in IMG/M
3300017792\|Ga0163161_10183930	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1604	Open in IMG/M
3300017965\|Ga0190266_10131844	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300017965\|Ga0190266_10181614	Not Available	984	Open in IMG/M
3300017965\|Ga0190266_10368079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	783	Open in IMG/M
3300017965\|Ga0190266_10670740	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300018083\|Ga0184628_10003747	All Organisms → cellular organisms → Bacteria	7242	Open in IMG/M
3300018083\|Ga0184628_10612911	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300018469\|Ga0190270_10003819	All Organisms → cellular organisms → Bacteria	7605	Open in IMG/M
3300018469\|Ga0190270_10479960	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1178	Open in IMG/M
3300018469\|Ga0190270_10616256	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300018469\|Ga0190270_11509281	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300018476\|Ga0190274_10749834	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300018476\|Ga0190274_11497922	Not Available	766	Open in IMG/M
3300018476\|Ga0190274_12398214	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300018476\|Ga0190274_12759173	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300018476\|Ga0190274_13206073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300018476\|Ga0190274_13533589	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300018481\|Ga0190271_10020838	All Organisms → cellular organisms → Bacteria	5048	Open in IMG/M
3300018481\|Ga0190271_11014107	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	954	Open in IMG/M
3300018481\|Ga0190271_12394056	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	632	Open in IMG/M
3300018481\|Ga0190271_13177910	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	551	Open in IMG/M
3300019361\|Ga0173482_10090667	All Organisms → cellular organisms → Bacteria	1090	Open in IMG/M
3300019361\|Ga0173482_10405493	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	635	Open in IMG/M
3300021082\|Ga0210380_10349974	All Organisms → cellular organisms → Bacteria	674	Open in IMG/M
3300021445\|Ga0182009_10511945	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300022756\|Ga0222622_10329482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1059	Open in IMG/M
3300022908\|Ga0247779_1182649	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300022915\|Ga0247790_10121799	All Organisms → cellular organisms → Bacteria	655	Open in IMG/M
3300023269\|Ga0247773_1221159	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	563	Open in IMG/M
3300025893\|Ga0207682_10239209	Not Available	843	Open in IMG/M
3300025899\|Ga0207642_10040550	All Organisms → cellular organisms → Bacteria	2032	Open in IMG/M
3300025903\|Ga0207680_11041293	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	586	Open in IMG/M
3300025908\|Ga0207643_10510241	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	769	Open in IMG/M
3300025908\|Ga0207643_10860657	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300025908\|Ga0207643_10907927	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	571	Open in IMG/M
3300025920\|Ga0207649_11187180	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300025924\|Ga0207694_11538926	Not Available	561	Open in IMG/M
3300025925\|Ga0207650_10028363	All Organisms → cellular organisms → Bacteria → Proteobacteria	4013	Open in IMG/M
3300025926\|Ga0207659_10940384	Not Available	743	Open in IMG/M
3300025926\|Ga0207659_11621088	Not Available	552	Open in IMG/M
3300025926\|Ga0207659_11716461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300025927\|Ga0207687_11028798	Not Available	706	Open in IMG/M
3300025936\|Ga0207670_10568659	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium 13_1_40CM_65_14	928	Open in IMG/M
3300025936\|Ga0207670_11495460	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300025937\|Ga0207669_10204231	All Organisms → cellular organisms → Bacteria → Acidobacteria	1437	Open in IMG/M
3300025937\|Ga0207669_10493133	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300025938\|Ga0207704_11274606	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300025940\|Ga0207691_10069204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3189	Open in IMG/M
3300025940\|Ga0207691_10191868	All Organisms → cellular organisms → Bacteria	1781	Open in IMG/M
3300025940\|Ga0207691_10291893	All Organisms → cellular organisms → Bacteria → Acidobacteria	1402	Open in IMG/M
3300025941\|Ga0207711_10571131	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300025941\|Ga0207711_12022540	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300025942\|Ga0207689_10665121	All Organisms → cellular organisms → Bacteria	878	Open in IMG/M
3300025942\|Ga0207689_10832423	Not Available	779	Open in IMG/M
3300025944\|Ga0207661_11105282	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	730	Open in IMG/M
3300025960\|Ga0207651_10476364	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1075	Open in IMG/M
3300026023\|Ga0207677_11029826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	748	Open in IMG/M
3300026067\|Ga0207678_10063658	All Organisms → cellular organisms → Bacteria	3169	Open in IMG/M
3300026075\|Ga0207708_11241358	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300026118\|Ga0207675_100503534	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1206	Open in IMG/M
3300026118\|Ga0207675_100988658	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	859	Open in IMG/M
3300027533\|Ga0208185_1055402	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	953	Open in IMG/M
3300027886\|Ga0209486_10000760	All Organisms → cellular organisms → Bacteria	14150	Open in IMG/M
3300027907\|Ga0207428_11272407	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300028380\|Ga0268265_10588759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1061	Open in IMG/M
3300028381\|Ga0268264_10318349	All Organisms → cellular organisms → Bacteria	1470	Open in IMG/M
3300028812\|Ga0247825_10575309	Not Available	806	Open in IMG/M
3300030620\|Ga0302046_10061815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3041	Open in IMG/M
3300031538\|Ga0310888_10476360	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	743	Open in IMG/M
3300031852\|Ga0307410_12005813	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfonema → Desulfonema limicola	516	Open in IMG/M
3300031903\|Ga0307407_11708440	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031908\|Ga0310900_10278964	Not Available	1218	Open in IMG/M
3300031908\|Ga0310900_11813717	Not Available	519	Open in IMG/M
3300031911\|Ga0307412_10413260	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1102	Open in IMG/M
3300031911\|Ga0307412_10831485	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	804	Open in IMG/M
3300031911\|Ga0307412_11720389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	575	Open in IMG/M
3300031940\|Ga0310901_10138869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	920	Open in IMG/M
3300032002\|Ga0307416_101457989	Not Available	790	Open in IMG/M
3300032005\|Ga0307411_12272101	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	509	Open in IMG/M
3300032075\|Ga0310890_11851571	Not Available	502	Open in IMG/M
3300032144\|Ga0315910_10904602	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032157\|Ga0315912_10057567	All Organisms → cellular organisms → Bacteria	3071	Open in IMG/M
3300032157\|Ga0315912_10253900	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300032205\|Ga0307472_100778523	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	871	Open in IMG/M
3300032205\|Ga0307472_101180566	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	730	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	54.43%
Environmental	Environmental	45.57%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	54.43%
Terrestrial	Environmental → Terrestrial	39.24%
Aquatic	Environmental → Aquatic	6.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	37.97%
Rhizosphere	Host-Associated → Plants → Rhizosphere	34.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.35%
Sediment	Environmental → Aquatic → Sediment	4.43%
Roots	Host-Associated → Plants → Roots	1.90%
Marine	Environmental → Aquatic → Marine	1.27%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.27%
Freshwater	Environmental → Aquatic → Freshwater	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	32.28%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	17.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.09%
Soil	Host-Associated → Plants → Rhizosphere → Soil	17.09%
Loam	Environmental → Terrestrial → Soil → Loam	5.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.43%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.90%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.27%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.27%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.99%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	17.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.09%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	17.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.43%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.43%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.80%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.80%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.90%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.27%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.27%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.27%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	16.46%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	9.49%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	8.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.96%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.06%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	4.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.80%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	2.53%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.53%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.53%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.53%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.90%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.90%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.27%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.27%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.27%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.27%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.27%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.27%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.27%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.27%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.63%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.63%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.63%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004022	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005333	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009610	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300012041	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT754_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022908	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L221-509R-5	Environmental	Open in IMG/M
3300022915	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S171-409R-4	Environmental	Open in IMG/M
3300023269	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027533	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT700 (SPAdes)	Environmental	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_00127020	2124908045	Soil	MRNALLGLVLAIGLALALSPVTIAGIAAWKIVLAAVGAVLVMTAGRGSTSGPAAP
JGI10216J12902_1038077802	3300000956	Soil	MRNVVTGLVLAAALALAVSPATVAGIDAWKIVLAVVGAFVFVTAGSRKPT*
JGI10216J12902_1045543641	3300000956	Soil	MRNALLGLVLAIGLALALSPATIGGIAAWKIVLAAFGAVLVVTAGRGSTSG
JGI10216J12902_1069588833	3300000956	Soil	ALALSPVTIAGIAAWKVVLAAFGAVLVVTAGRGEKAGPTRPPG*
JGI10216J12902_1152615682	3300000956	Soil	MRNALLGLALAIGLALALSPLTIAGIDAWKIVLAAAGALLFVTAGNKKSSGKSGG*
Ga0055432_100626792	3300004022	Natural And Restored Wetlands	MKNLAIGLVVAVALALALSPVTIAGIAAWKIVLAAFGALLVVTASGRSGGESGR*
Ga0062593_1022198412	3300004114	Soil	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS*
Ga0062594_1007037462	3300005093	Soil	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGEKVK*
Ga0068999_100810642	3300005205	Natural And Restored Wetlands	MRNLVIGLVVAATLALAASPATIAGIAVWKIVLAAFGAVLVVTAGRGNTPTRPT*
Ga0070676_103713852	3300005328	Miscanthus Rhizosphere	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRAPSA*
Ga0070670_10000734910	3300005331	Switchgrass Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPT*
Ga0070677_100544552	3300005333	Miscanthus Rhizosphere	MRNLLIGIVVAAALALAVSPVRIAGIDAWKIVLAVVGAVLVVTAGRGTPTRPT*
Ga0070677_101048432	3300005333	Miscanthus Rhizosphere	MRNLVMGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGSADKPT*
Ga0068869_1001947192	3300005334	Miscanthus Rhizosphere	MRNALIGILLAGAIALAASPARIAGIDAWKIVLAAIGAVLVVTAGRSGKVG*
Ga0068869_1010199472	3300005334	Miscanthus Rhizosphere	MKNVAMGLAIAVALALSASPLTVAGIAAWKIVLAAVGAVLVVTANRPGRPTGPA*
Ga0070682_1014812452	3300005337	Corn Rhizosphere	AALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGEKVK*
Ga0068868_1007609912	3300005338	Miscanthus Rhizosphere	MRNLLMGLVLAAALALAASPVRVAGIDAWKIVLAAIGAVLVVTAGRSGKVG*
Ga0070689_1001514053	3300005340	Switchgrass Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKIVLAAVGAFLVVTAGRGSADKPT
Ga0070669_1000535493	3300005353	Switchgrass Rhizosphere	MRNLLIGLALAAALALALSPVRVAGIDAWKIVLAAIGAVLVVTAGRSTSGPSAP*
Ga0070669_1001071182	3300005353	Switchgrass Rhizosphere	MRNLVMGVVLAAALALAMSPARIAGIDAWKIVLAAVGAFLVVTAGRGSADKPT*
Ga0070669_1014029982	3300005353	Switchgrass Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGTPTRPT*
Ga0070675_1004500163	3300005354	Miscanthus Rhizosphere	VIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN*
Ga0070673_1001269612	3300005364	Switchgrass Rhizosphere	MKNVVMGLVIAAALAISASPLTIAGIAAWKIVLAAVGAVLVVTANRGQVNK*
Ga0070673_1004400892	3300005364	Switchgrass Rhizosphere	VAVALALAASPITVAGIDAWKIVLAGAGFVLFATAGRGRTPSP*
Ga0070701_109382781	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGSADKPT*
Ga0070663_1000077722	3300005455	Corn Rhizosphere	MRNAVIGFVLAGALALALSPVTIVGIDAWKIVLGIVGAFLVVTAGRENKAG*
Ga0068867_1009252711	3300005459	Miscanthus Rhizosphere	ALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGTPTRPT*
Ga0070685_112875271	3300005466	Switchgrass Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKIVLAAVGAFLVVTAGRGSADKPT*
Ga0070698_1020009321	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRNALIGILLAGAIALAASPARIAGIDAWKIVLAAVGAVLVVTAGRGNRVG*
Ga0070672_1010066302	3300005543	Miscanthus Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAVIGAVLVVTAGRGSTPTRPT*
Ga0070664_1003376792	3300005564	Corn Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN*
Ga0068859_1003338853	3300005617	Switchgrass Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAAVGAVLVVTAGRNPARPT*
Ga0068859_1007380552	3300005617	Switchgrass Rhizosphere	MKNAAIGLVIAGAIALAMSPITIAGIAAWKIVLAAVGAVLVVTAGRNR*
Ga0068864_1012443292	3300005618	Switchgrass Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAALGAVLVVTAGRGSTPTRPT*
Ga0068864_1026896242	3300005618	Switchgrass Rhizosphere	MKNAVIGLAIAGGLALALSPIVIAGVAAWKIVLAAAGAVLVVTAGRDKVK*
Ga0068861_1004930622	3300005719	Switchgrass Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGNR*
Ga0068861_1014174661	3300005719	Switchgrass Rhizosphere	ALALAASPVTVAGIDAWKIVLAAGGFVLFATAGRGRSPSA*
Ga0068870_100357434	3300005840	Miscanthus Rhizosphere	SMRNLVMGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGSADKPT*
Ga0068870_102243931	3300005840	Miscanthus Rhizosphere	AAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN*
Ga0068863_1026755282	3300005841	Switchgrass Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAVIGAVLVVTAGRGS
Ga0066652_1018314792	3300006046	Soil	RSMRNLGIGIVLAAALALAMSPARIAGIDAWKIVLAVIGAVLVVTAGRGTPSRPT*
Ga0097621_1003136983	3300006237	Miscanthus Rhizosphere	MRNLVIGIVLAAALAFAVSPARIVGIDAWKIVLAAIGAVLVVTAGRGTPTRPT*
Ga0068871_1022145691	3300006358	Miscanthus Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVT
Ga0079222_123527202	3300006755	Agricultural Soil	MKNLAIGLVAAAALALALSPLTIAGIDAWKIVLAVFGAVLVVTAGRGNKVR*
Ga0075429_1009976312	3300006880	Populus Rhizosphere	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFSTAGRGRAPSA*
Ga0068865_1010412632	3300006881	Miscanthus Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGGADKPT*
Ga0079215_100468521	3300006894	Agricultural Soil	MRNVLVGVVLAAGLALALSPLTIAGIDAWKIVLAAGGAFLFVTAGRGSKVR*
Ga0079216_113971422	3300006918	Agricultural Soil	MRNVVTGLVLAAALALAVSPATIAGIDAWKIVLAVVGALVFVTAGSRKPT*
Ga0075435_1008601692	3300007076	Populus Rhizosphere	MKNGAMGLLVAAAIAIALSPITIAGIAAWKIVLAAVGAVLVVTAGRPTSFP*
Ga0111539_113506502	3300009094	Populus Rhizosphere	LAAALALAAAPVTIAGIDAWKIGPGAAGLVLFVTAGRGRAPSA*
Ga0111539_121110212	3300009094	Populus Rhizosphere	MRNALLGLVLAIGLALALSPVTIAGIAAWKIVLAAFGVVLVVTAGRGEKARPTRPPG*
Ga0105245_119028121	3300009098	Miscanthus Rhizosphere	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGDKVK*
Ga0075418_103214662	3300009100	Populus Rhizosphere	MRNLAIGVVIAAALALALSPLTIAGIDAWKIVLAAVGAVLVMTAGRGSTSGPAVP*
Ga0075418_127632032	3300009100	Populus Rhizosphere	MRNLLIGIVLAALLALAVSPVRVAGIDAWKIVLAAIGAVLVVTAGRGSTPTRPT*
Ga0105243_129787792	3300009148	Miscanthus Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAI
Ga0075423_117845232	3300009162	Populus Rhizosphere	MRNLLIGLALAAALALALSPVRVAGIDAWKIVLAVIGAVLVVTAGRSTSGPSA
Ga0105248_108121702	3300009177	Switchgrass Rhizosphere	MRNLVRGIVVAVALALAASPITVAGIDAWKIVLAGAGFVLFATAGRGRTPSP*
Ga0105340_10234652	3300009610	Soil	MRNVLIGLVLAVALALAASPATVAGIDAWKIVLAAVGAFLFVTAGRGRAG*
Ga0126381_1021666921	3300010376	Tropical Forest Soil	MKNGAIGLVVATAIALALSPITIAGIAAWKVVLAAVGAVLVVTAGREKVK*
Ga0134127_127445382	3300010399	Terrestrial Soil	MRNLLIGLVLAAALALAVSPVTIAGIDAWKIVLAAVGAVLVVTAGRGSSAPPS*
Ga0134123_132220942	3300010403	Terrestrial Soil	MRNMLIGVALAGALALAASPLTVAGIDAWKIVLAAGGFVLFATAGRGRSPSA*
Ga0137451_12454311	3300011438	Soil	LMRNVLIGLVLAVALALAASPATVAGIDAWKIVLAVVGAFLFVTAGRGRAG*
Ga0137430_11223992	3300012041	Soil	VLLAAGLALALSPLTIAGIDAWKIVLAAAGAFLFVTAGRGRAPSA*
Ga0150985_1178560283	3300012212	Avena Fatua Rhizosphere	MKNAVIGLVIASALALALSPIRIAGIDAWKIVLAAVGAVLVVTAGRERVK*
Ga0157305_100804172	3300012891	Soil	MSTISSGPLPLALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS*
Ga0157294_101964682	3300012892	Soil	LALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS*
Ga0157375_122045581	3300013308	Miscanthus Rhizosphere	MWNLVMGVVLAAALALAMSPARIAGIDAWKILLAAVGAVLVV
Ga0157375_126518042	3300013308	Miscanthus Rhizosphere	MRNLVMGLVVAAALALAVSPVRIAGFDAWKIVLAAIGAVLVVTAGRGTPTRPT*
Ga0163163_108421842	3300014325	Switchgrass Rhizosphere	MRNLLIGVALAGALALAASPVTVAGIDAWKIVLAAGGFVLFATAGRGRSPSA*
Ga0157380_1000126413	3300014326	Switchgrass Rhizosphere	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGQKVK*
Ga0157380_103339262	3300014326	Switchgrass Rhizosphere	MRNALLGLVLAIGLALALSPVTVAGIAAWKIVLAAFGAVLVVTAGRGSTSGPAGP*
Ga0157376_111949652	3300014969	Miscanthus Rhizosphere	MRNLVIGVAVAGALALAASPVRIVGIDAWKIVLAGLGLVLFVTAGRGRAPSA*
Ga0132255_1000583755	3300015374	Arabidopsis Rhizosphere	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGERAK*
Ga0163161_101839302	3300017792	Switchgrass Rhizosphere	MRNLVIGVVVAVALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGEKVK
Ga0190266_101318442	3300017965	Soil	MRNVLIGLVLAVALALAASPATVAGIDAWKIVLAVVGAFLFVTAGRGNKVR
Ga0190266_101816141	3300017965	Soil	LALALSPLTIAGIDAWKIVLAAAGAFLFVTAGRGRAPSA
Ga0190266_103680792	3300017965	Soil	MRNLLIGVVLAGALALAASPLTVAGIDAWKIVLAAAGLVLFVTSGRGRAPSSPKP
Ga0190266_106707402	3300017965	Soil	MRNALLGLVLAIGLALALSPVTVAGIAAWKIVLAAFGAVLVVTAGRGSTSGPAGP
Ga0184628_100037472	3300018083	Groundwater Sediment	MRNLVRGIVAAVALALAASPITVAGIDAWKIVLAGVGFVLFVTARRGSTPSP
Ga0184628_106129112	3300018083	Groundwater Sediment	MRNLVIGLVVAAALALAVSPVRIAGIDAWKIVLAVIGAVLVVTAGRGSTPTRPT
Ga0190270_100038193	3300018469	Soil	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRASST
Ga0190270_104799603	3300018469	Soil	VVLAVGLALALSPLTIAGIDAWKIVLAAAGAFLFVTAGRGRASSG
Ga0190270_106162562	3300018469	Soil	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS
Ga0190270_115092812	3300018469	Soil	MRNLLIGVVLAGALALAASPLTVAGIDAWKIVLAAAGLVLFVTSGRGRAPSA
Ga0190274_107498342	3300018476	Soil	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGTPTRPT
Ga0190274_114979221	3300018476	Soil	LLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATARRGRSPS
Ga0190274_123982141	3300018476	Soil	VVLAAGLALALSPLTIAGIDAWKIVLAAAGAFLFVTAGRGRASSG
Ga0190274_127591731	3300018476	Soil	MRNVVMGLVLAAALALAVSPATVAGIAAWKIVLAA
Ga0190274_132060732	3300018476	Soil	MRNVLIGVVLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRS
Ga0190274_135335892	3300018476	Soil	MRNVLIGLVLAVALALAASPATVAGIDAWKIVLAVVGAFLFVTAGRGRAG
Ga0190271_100208385	3300018481	Soil	MRNLLIGFALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRASST
Ga0190271_110141072	3300018481	Soil	MRNAVIGVALAAGLALALSPLTIVGIDAWKIVLAATGALLFVTAGRGRAPSA
Ga0190271_123940562	3300018481	Soil	MRNLLIGVGLAGALALAASPLTVAGIDAWKIVLAAAGFVLFATAGRGRTPS
Ga0190271_131779102	3300018481	Soil	VLLAAGLALALSPLTIAGIDAWKVVLAAAGAFLFVTAGRGRAPSA
Ga0173482_100906672	3300019361	Soil	MRNLLIGVALAGALALAASPVTVAGIDAWKIVLAAGGFVLFATAGRGRSPSA
Ga0173482_104054931	3300019361	Soil	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAV
Ga0210380_103499741	3300021082	Groundwater Sediment	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRAPSA
Ga0182009_105119452	3300021445	Soil	IGLAIAGGLALALSPITIAGVAAWKIVLAAAGAVLVVTAGREKVK
Ga0222622_103294822	3300022756	Groundwater Sediment	MRNLVIGLVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVT
Ga0247779_11826491	3300022908	Plant Litter	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAA
Ga0247790_101217991	3300022915	Soil	AGRCIVEAPMRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS
Ga0247773_12211592	3300023269	Plant Litter	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVL
Ga0207682_102392091	3300025893	Miscanthus Rhizosphere	NLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGEKVK
Ga0207642_100405502	3300025899	Miscanthus Rhizosphere	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAGRGEKVK
Ga0207680_110412932	3300025903	Switchgrass Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAAVGAVLVVTAGRNP
Ga0207643_105102412	3300025908	Miscanthus Rhizosphere	MRNLLMGLVLAAALALAASPVRVAGIDAWKIVLAAIGAVLVVTAGRSGKVG
Ga0207643_108606571	3300025908	Miscanthus Rhizosphere	VKNVALGLAVAVALAISASPLTIAGIAAWKIVLAAVGAVLVVTANRGQVNK
Ga0207643_109079272	3300025908	Miscanthus Rhizosphere	MRNALIGILLAGAIALAASPARIAGIDAWKIVLAAVGAVLVVTAGRGNKVG
Ga0207649_111871801	3300025920	Corn Rhizosphere	DRARSMRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN
Ga0207694_115389262	3300025924	Corn Rhizosphere	MKNAAIGLLIAGGLALALSPIMIAGIAAWKIVLAAVGAVLVVTAGREKVK
Ga0207650_100283635	3300025925	Switchgrass Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN
Ga0207659_109403842	3300025926	Miscanthus Rhizosphere	VVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRPN
Ga0207659_116210882	3300025926	Miscanthus Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRSRPT
Ga0207659_117164612	3300025926	Miscanthus Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPTRP
Ga0207687_110287981	3300025927	Miscanthus Rhizosphere	LVVAAALALAVSPVRIAGIDAWKIVLAAVGAVLVVTAGRNPARPT
Ga0207670_105686592	3300025936	Switchgrass Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKIVLAAVGAFLVVTAGRGSTPTRPT
Ga0207670_114954601	3300025936	Switchgrass Rhizosphere	AGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRAPSA
Ga0207669_102042312	3300025937	Miscanthus Rhizosphere	MRNLLIGIVVAAALALAVSPVRIAGIDAWKIVLAVVGAVLVVTAGRGTPTRPT
Ga0207669_104931332	3300025937	Miscanthus Rhizosphere	MRNLLIGVGLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRAPSA
Ga0207704_112746061	3300025938	Miscanthus Rhizosphere	MGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGGADKPT
Ga0207691_100692044	3300025940	Miscanthus Rhizosphere	MRNLLMGLVLAAALALAASPVRVAGIDAWKIVLAAIGAVLVVTAGRSGKV
Ga0207691_101918683	3300025940	Miscanthus Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAVIGAVLVVTAGRGSTPTRPT
Ga0207691_102918931	3300025940	Miscanthus Rhizosphere	VAVALALAASPVTVAGIDAWKIVLAGAGFVLFATAGRGRTPSP
Ga0207711_105711312	3300025941	Switchgrass Rhizosphere	VAVALALAASPITVAGIDAWKIVLAGAGFVLFATAGRGRTPSP
Ga0207711_120225402	3300025941	Switchgrass Rhizosphere	YRSMRNLVMGVVLAAALALAMSPARIAGIDAWKILLAAVGAFLVVTAGRGSADKPT
Ga0207689_106651212	3300025942	Miscanthus Rhizosphere	MKNVAMGLAIAVALALSASPLTVAGIAAWKIVLAAVGAVLVVTANRPGRPTGPA
Ga0207689_108324231	3300025942	Miscanthus Rhizosphere	PRPMRNLLMGLVLAAALALAASPVRVAGIDAWKIVLAAIGAVLVVTAGRSGKVG
Ga0207661_111052822	3300025944	Corn Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGGTPT
Ga0207651_104763642	3300025960	Switchgrass Rhizosphere	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVL
Ga0207677_110298262	3300026023	Miscanthus Rhizosphere	MRNLVIGIVVAAALALAVSPVRIAGIDAWKIVLAA
Ga0207678_100636584	3300026067	Corn Rhizosphere	MRNAVIGFVLAGALALALSPVTIVGIDAWKIVLGIVGAFLVVTAGRENKAG
Ga0207708_112413582	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MRNMLIGVALAGALALAASPLTVAGIDAWKIVLAAAGFVLFATAGRGRTPSP
Ga0207675_1005035341	3300026118	Switchgrass Rhizosphere	MRNLLIGLVVAAALALAVSPVRIAGIDAWKIVLAAIGAVLVVTAGRGNR
Ga0207675_1009886582	3300026118	Switchgrass Rhizosphere	MRNALIGIALAGGLALAASPARIAGIDAWKIVLAAV
Ga0208185_10554022	3300027533	Soil	MRNVLIGLVLAVALALAASPATVAGIDAWKIVLAAVGAFLFVTAGRGRAG
Ga0209486_100007609	3300027886	Agricultural Soil	MRNVLVGVVLAAGLALALSPLTIAGIDAWKIVLAAGGAFLFVTAGRGSKVR
Ga0207428_112724071	3300027907	Populus Rhizosphere	MRNLVIGVVVAAALALALSPARIAGIDAWKIVLAAIGAVLVVTAG
Ga0268265_105887591	3300028380	Switchgrass Rhizosphere	MRNALIGILLAGAIALAASPARIAGIDAWKIVLAAVGAVLVVTAGRGNRVG
Ga0268264_103183492	3300028381	Switchgrass Rhizosphere	MGLVVAAALALAVSPVRIAGIDAWKIVLAAVGAVLVVTAGRNPARPT
Ga0247825_105753092	3300028812	Soil	AGRCIVDAPMRNLLIGVVLAGALALAASPVTVAGIDAWKIVLAAAGFVLFATAGRGRSPS
Ga0302046_100618154	3300030620	Soil	MLGAAAAGGLALAMSDATFFGIDAWKIVLAVAGLVLFVVGGRASGRS
Ga0310888_104763602	3300031538	Soil	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVTAGRGRA
Ga0307410_120058132	3300031852	Rhizosphere	MRNVLTGLVIVVALALAASPVTVAGIAVWKLVLAVFGAFLFVTGGSRKA
Ga0307407_117084402	3300031903	Rhizosphere	MRNVLTGLVIVVALALAASPVTVAGIAVWKLVLAVFGAFLFVTAGSRKA
Ga0310900_102789642	3300031908	Soil	MRNALLGLVLAMGLALSLSPVTIAGIAAWKIVLAAFGAVLVVTAGRGSTSGPAGP
Ga0310900_118137172	3300031908	Soil	MRNALLGLVLAIGLALALSPVTIAGIAAWKIVLAAFGVV
Ga0307412_104132603	3300031911	Rhizosphere	MRNILLGLVAAAGLALALSPVTVAGIAAWKIVLAVFGAFLFVT
Ga0307412_108314852	3300031911	Rhizosphere	MRNVLVGLVIAVGLALAASPVTVAGIAAWKIVLAVFGAFVFVTAGTRKSDKG
Ga0307412_117203892	3300031911	Rhizosphere	MRNVLIGLVIAVGLALAASPVTVAGIAAWKIVLAAFGAFLFVTAGT
Ga0310901_101388691	3300031940	Soil	MRNLLIGSALAGALALAASPVTIAGIDAWKIVLAAAGLVLFVT
Ga0307416_1014579891	3300032002	Rhizosphere	MRNVLIGLVIAVGLALAASPVTVAGIAAWKIVLAAFGAFLFVTAGTRKAG
Ga0307411_122721012	3300032005	Rhizosphere	MRNVLIGLVMAVGLALAVSPVAVAGIAAWKIVLAAFGAFLFVTAGTRRA
Ga0310890_118515712	3300032075	Soil	MRNALLGLVLAIGLALALSPVTIAGIAAWKIVLAAFGVVLVVTAGRGEKARPTRPPG
Ga0315910_109046022	3300032144	Soil	VVLAAGLALALSPLTIAGIDAWKIVLAAAGAVLFVTAGRGRAPSA
Ga0315912_100575673	3300032157	Soil	MRNLTIGLVVAAALALALSPVTIAGIAAWKIVLAAFGAVLVVTAGRGNKVR
Ga0315912_102539002	3300032157	Soil	MKNGALGLVIAGALALALSPATVAGIAVWKILLAAVGAVLVVTAGKSGGSSKS
Ga0307472_1007785232	3300032205	Hardwood Forest Soil	VRNLLIGVVLAGALALAASPARFFGIDAWKIVLALAGFVLFATAGRGRGDAGRS
Ga0307472_1011805662	3300032205	Hardwood Forest Soil	MRNMLIGVLAAGALALAASPLTVAGIDVWKIVLAAAGFVLFSTAGRGRSPS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F042396

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences