Metagenome / Metatranscriptome Family F042318

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F042318
Family Type	Metagenome / Metatranscriptome
Number of Sequences	158
Average Sequence Length	51 residues
Representative Sequence	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Number of Associated Samples	91
Number of Associated Scaffolds	158

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.15 %
% of genes near scaffold ends (potentially truncated)	47.47 %
% of genes from short scaffolds (< 2000 bps)	82.91 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.924 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (20.886 % of family members)
Environment Ontology (ENVO)	Unclassified (27.848 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (24.051 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 25.97% β-sheet: 0.00% Coil/Unstructured: 74.03%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 158 Family Scaffolds
PF00005	ABC_tran	13.29
PF00441	Acyl-CoA_dh_1	6.33
PF01022	HTH_5	3.80
PF02771	Acyl-CoA_dh_N	2.53
PF00296	Bac_luciferase	1.90
PF01648	ACPS	1.27
PF13407	Peripla_BP_4	1.27
PF13894	zf-C2H2_4	1.27
PF12697	Abhydrolase_6	1.27
PF00872	Transposase_mut	1.27
PF04542	Sigma70_r2	1.27
PF08281	Sigma70_r4_2	1.27
PF06305	LapA_dom	0.63
PF13796	Sensor	0.63
PF01695	IstB_IS21	0.63
PF02656	DUF202	0.63
PF14216	DUF4326	0.63
PF05221	AdoHcyase	0.63
PF01547	SBP_bac_1	0.63
PF08592	Anthrone_oxy	0.63
PF13751	DDE_Tnp_1_6	0.63
PF00082	Peptidase_S8	0.63
PF03704	BTAD	0.63
PF00694	Aconitase_C	0.63
PF04012	PspA_IM30	0.63
PF13649	Methyltransf_25	0.63
PF12840	HTH_20	0.63
PF11898	DUF3418	0.63
PF09118	GO-like_E_set	0.63
PF06114	Peptidase_M78	0.63
PF05598	DUF772	0.63
PF13191	AAA_16	0.63
PF00860	Xan_ur_permease	0.63
PF13561	adh_short_C2	0.63
PF02812	ELFV_dehydrog_N	0.63
PF00196	GerE	0.63
PF03795	YCII	0.63
PF12680	SnoaL_2	0.63
PF07228	SpoIIE	0.63
PF07995	GSDH	0.63
PF13472	Lipase_GDSL_2	0.63
PF00440	TetR_N	0.63
PF13604	AAA_30	0.63
PF14333	DUF4389	0.63
PF07748	Glyco_hydro_38C	0.63
PF12728	HTH_17	0.63
PF00211	Guanylate_cyc	0.63
PF13581	HATPase_c_2	0.63

COG ID	Name	Functional Category	% Frequency in 158 Family Scaffolds
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	8.86
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.90
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.27
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.27
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.27
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.27
COG1842	Phage shock protein A	Transcription [K]	1.27
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	1.27
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.63
COG3947	Two-component response regulator, SAPR family, consists of REC, wHTH and BTAD domains	Transcription [K]	0.63
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.63
COG3629	DNA-binding transcriptional regulator DnrI/AfsR/EmbR, SARP family, contains BTAD domain	Transcription [K]	0.63
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.63
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.63
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	0.63
COG0334	Glutamate dehydrogenase/leucine dehydrogenase	Amino acid transport and metabolism [E]	0.63
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.63
COG0499	S-adenosylhomocysteine hydrolase	Coenzyme transport and metabolism [H]	0.63
COG0383	Alpha-mannosidase	Carbohydrate transport and metabolism [G]	0.63

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.92 %
Unclassified	root	N/A	36.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.92 %
Unclassified	root	N/A	36.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.92 %
Unclassified	root	N/A	36.08 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	50.63 %
Unclassified	root	N/A	36.08 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	46.84 %
Unclassified	root	N/A	36.08 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.27 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.48 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.63 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.63 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Kineosporiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales	1.90 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	1.90 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.90 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.27 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.27 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.63 %
Jiangellales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales	0.63 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	0.63 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.63 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.63 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.63 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Kineosporiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae	1.90 %
unclassified Pseudonocardiales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales	1.90 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.90 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	1.27 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.27 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples	0.63 %
Jiangellaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae	0.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.63 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.63 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.63 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	1.90 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.90 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.27 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	1.27 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1.27 %
Jiangella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella	0.63 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.63 %
unclassified Nocardioidaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae	0.63 %
Dactylosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium	0.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.63 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.63 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	1.90 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.90 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → environmental samples	1.27 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.27 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1.27 %
Jiangella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella aurantiaca	0.63 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	0.63 %
Dactylosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → Dactylosporangium roseum	0.63 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.63 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.63 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.08 %
Kineosporia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	1.90 %
Pseudonocardiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	1.90 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1.90 %
uncultured Blastococcus sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → environmental samples → uncultured Blastococcus sp.	1.27 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1.27 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1.27 %
Jiangella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella aurantiaca	0.63 %
Nocardioidaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	0.63 %
Dactylosporangium roseum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → Dactylosporangium roseum	0.63 %
uncultured Acidimicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	0.63 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.63 %
Thermoactinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	0.63 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	0.63 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.63 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1195817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	689	Open in IMG/M
3300000550\|F24TB_12129259	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	578	Open in IMG/M
3300000559\|F14TC_100118771	Not Available	658	Open in IMG/M
3300000559\|F14TC_100133545	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2403	Open in IMG/M
3300000956\|JGI10216J12902_107444667	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300000956\|JGI10216J12902_115863537	Not Available	634	Open in IMG/M
3300003373\|JGI25407J50210_10003882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3620	Open in IMG/M
3300003373\|JGI25407J50210_10009760	All Organisms → cellular organisms → Bacteria	2437	Open in IMG/M
3300003373\|JGI25407J50210_10023091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1614	Open in IMG/M
3300003373\|JGI25407J50210_10024178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1576	Open in IMG/M
3300003373\|JGI25407J50210_10029431	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1423	Open in IMG/M
3300003373\|JGI25407J50210_10033340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	1330	Open in IMG/M
3300003373\|JGI25407J50210_10049994	All Organisms → cellular organisms → Bacteria	1061	Open in IMG/M
3300003373\|JGI25407J50210_10051595	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300003373\|JGI25407J50210_10175509	Not Available	528	Open in IMG/M
3300004463\|Ga0063356_102630584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	773	Open in IMG/M
3300004463\|Ga0063356_105731240	Not Available	533	Open in IMG/M
3300004479\|Ga0062595_102647636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	504	Open in IMG/M
3300005347\|Ga0070668_100284216	All Organisms → cellular organisms → Bacteria	1383	Open in IMG/M
3300005562\|Ga0058697_10020014	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2333	Open in IMG/M
3300005562\|Ga0058697_10039771	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1758	Open in IMG/M
3300005562\|Ga0058697_10053858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1550	Open in IMG/M
3300005562\|Ga0058697_10298319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	768	Open in IMG/M
3300005562\|Ga0058697_10393230	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	685	Open in IMG/M
3300005562\|Ga0058697_10654128	Not Available	554	Open in IMG/M
3300005562\|Ga0058697_10741884	Not Available	526	Open in IMG/M
3300005937\|Ga0081455_10007089	All Organisms → cellular organisms → Bacteria	11886	Open in IMG/M
3300005937\|Ga0081455_10011941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	8693	Open in IMG/M
3300005981\|Ga0081538_10004699	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	12504	Open in IMG/M
3300005981\|Ga0081538_10012636	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6756	Open in IMG/M
3300005981\|Ga0081538_10091054	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1576	Open in IMG/M
3300005981\|Ga0081538_10116631	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1295	Open in IMG/M
3300005981\|Ga0081538_10132185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1170	Open in IMG/M
3300005985\|Ga0081539_10087861	Not Available	1614	Open in IMG/M
3300005985\|Ga0081539_10407302	Not Available	565	Open in IMG/M
3300006581\|Ga0074048_13414135	All Organisms → cellular organisms → Bacteria	1315	Open in IMG/M
3300006605\|Ga0074057_11882573	Not Available	540	Open in IMG/M
3300006844\|Ga0075428_100206570	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2122	Open in IMG/M
3300009147\|Ga0114129_10371199	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1891	Open in IMG/M
3300009147\|Ga0114129_10683023	All Organisms → cellular organisms → Bacteria	1322	Open in IMG/M
3300009789\|Ga0126307_10582252	Not Available	904	Open in IMG/M
3300009799\|Ga0105075_1051233	Not Available	534	Open in IMG/M
3300009801\|Ga0105056_1063950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	536	Open in IMG/M
3300009806\|Ga0105081_1043645	Not Available	635	Open in IMG/M
3300009811\|Ga0105084_1069530	Not Available	638	Open in IMG/M
3300009814\|Ga0105082_1113704	Not Available	521	Open in IMG/M
3300009815\|Ga0105070_1061534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	706	Open in IMG/M
3300009818\|Ga0105072_1092082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300009822\|Ga0105066_1070352	Not Available	750	Open in IMG/M
3300009836\|Ga0105068_1113556	Not Available	537	Open in IMG/M
3300009840\|Ga0126313_10001710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	11780	Open in IMG/M
3300009840\|Ga0126313_10080119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2365	Open in IMG/M
3300010036\|Ga0126305_10563671	Not Available	763	Open in IMG/M
3300010036\|Ga0126305_11283416	Not Available	505	Open in IMG/M
3300010037\|Ga0126304_10607943	Not Available	737	Open in IMG/M
3300010041\|Ga0126312_10046717	All Organisms → cellular organisms → Bacteria	2898	Open in IMG/M
3300010041\|Ga0126312_10150497	Not Available	1615	Open in IMG/M
3300010041\|Ga0126312_10440228	Not Available	929	Open in IMG/M
3300010044\|Ga0126310_10485636	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300010045\|Ga0126311_10343268	Not Available	1136	Open in IMG/M
3300010045\|Ga0126311_11580013	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	551	Open in IMG/M
3300010145\|Ga0126321_1119801	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	547	Open in IMG/M
3300010145\|Ga0126321_1155072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	647	Open in IMG/M
3300010145\|Ga0126321_1415918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	555	Open in IMG/M
3300010166\|Ga0126306_10352008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	1144	Open in IMG/M
3300010375\|Ga0105239_12040416	Not Available	666	Open in IMG/M
3300010999\|Ga0138505_100062730	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	545	Open in IMG/M
3300011107\|Ga0151490_1393720	Not Available	600	Open in IMG/M
3300012350\|Ga0137372_10076404	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Dactylosporangium → Dactylosporangium roseum	2865	Open in IMG/M
3300012360\|Ga0137375_10538558	Not Available	985	Open in IMG/M
3300012938\|Ga0162651_100067704	Not Available	584	Open in IMG/M
3300014487\|Ga0182000_10023605	Not Available	1652	Open in IMG/M
3300014965\|Ga0120193_10018054	Not Available	769	Open in IMG/M
3300015371\|Ga0132258_10005356	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	25137	Open in IMG/M
3300017792\|Ga0163161_11563806	Not Available	581	Open in IMG/M
3300017965\|Ga0190266_10592523	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Jiangellales → Jiangellaceae → Jiangella → Jiangella aurantiaca	669	Open in IMG/M
3300017997\|Ga0184610_1119235	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	849	Open in IMG/M
3300018028\|Ga0184608_10310405	Not Available	693	Open in IMG/M
3300018028\|Ga0184608_10416108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	582	Open in IMG/M
3300018052\|Ga0184638_1004654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4417	Open in IMG/M
3300018072\|Ga0184635_10005970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3978	Open in IMG/M
3300018078\|Ga0184612_10108486	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1453	Open in IMG/M
3300018432\|Ga0190275_10234169	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1761	Open in IMG/M
3300018476\|Ga0190274_10011050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5621	Open in IMG/M
3300018476\|Ga0190274_12101824	Not Available	661	Open in IMG/M
3300018476\|Ga0190274_12228367	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300019254\|Ga0184641_1036421	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300019767\|Ga0190267_10557246	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300022195\|Ga0222625_1022831	All Organisms → cellular organisms → Bacteria	1620	Open in IMG/M
3300022195\|Ga0222625_1261503	Not Available	795	Open in IMG/M
3300027056\|Ga0209879_1004256	All Organisms → cellular organisms → Bacteria	2142	Open in IMG/M
3300027056\|Ga0209879_1023124	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1031	Open in IMG/M
3300027068\|Ga0209898_1040830	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → environmental samples → uncultured Blastococcus sp.	599	Open in IMG/M
3300027332\|Ga0209861_1004254	All Organisms → cellular organisms → Bacteria	2149	Open in IMG/M
3300027577\|Ga0209874_1040216	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → environmental samples → uncultured Blastococcus sp.	1247	Open in IMG/M
3300027577\|Ga0209874_1062109	All Organisms → cellular organisms → Bacteria	946	Open in IMG/M
3300027695\|Ga0209966_1144712	Not Available	552	Open in IMG/M
3300027718\|Ga0209795_10044763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1368	Open in IMG/M
3300027718\|Ga0209795_10077065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia	971	Open in IMG/M
3300027750\|Ga0209461_10005488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2089	Open in IMG/M
3300027750\|Ga0209461_10192995	Not Available	516	Open in IMG/M
3300027907\|Ga0207428_11317682	Not Available	500	Open in IMG/M
3300027952\|Ga0209889_1044681	Not Available	936	Open in IMG/M
3300027952\|Ga0209889_1125631	Not Available	504	Open in IMG/M
3300027954\|Ga0209859_1052938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	656	Open in IMG/M
3300027961\|Ga0209853_1045234	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → environmental samples → uncultured Acidimicrobiales bacterium	1237	Open in IMG/M
3300028711\|Ga0307293_10192695	Not Available	649	Open in IMG/M
3300028755\|Ga0307316_10319932	Not Available	569	Open in IMG/M
3300028771\|Ga0307320_10247662	Not Available	702	Open in IMG/M
3300028771\|Ga0307320_10252887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	695	Open in IMG/M
3300028784\|Ga0307282_10366302	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	697	Open in IMG/M
3300028814\|Ga0307302_10004219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6365	Open in IMG/M
3300028814\|Ga0307302_10131611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1206	Open in IMG/M
3300028878\|Ga0307278_10002665	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8767	Open in IMG/M
3300028878\|Ga0307278_10036111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2252	Open in IMG/M
3300028878\|Ga0307278_10282886	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	734	Open in IMG/M
3300028881\|Ga0307277_10287070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	729	Open in IMG/M
3300030829\|Ga0308203_1097607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	500	Open in IMG/M
3300030830\|Ga0308205_1002596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1469	Open in IMG/M
3300030830\|Ga0308205_1014114	All Organisms → cellular organisms → Bacteria → Terrabacteria group	854	Open in IMG/M
3300030830\|Ga0308205_1020698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	753	Open in IMG/M
3300030830\|Ga0308205_1050561	Not Available	553	Open in IMG/M
3300030902\|Ga0308202_1099985	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	598	Open in IMG/M
3300030902\|Ga0308202_1161900	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300030903\|Ga0308206_1005783	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1650	Open in IMG/M
3300030903\|Ga0308206_1046119	Not Available	850	Open in IMG/M
3300030903\|Ga0308206_1075148	Not Available	718	Open in IMG/M
3300030903\|Ga0308206_1122931	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	602	Open in IMG/M
3300030903\|Ga0308206_1127476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	594	Open in IMG/M
3300030903\|Ga0308206_1135698	Not Available	581	Open in IMG/M
3300031039\|Ga0102760_10785063	Not Available	594	Open in IMG/M
3300031092\|Ga0308204_10061827	All Organisms → cellular organisms → Bacteria	942	Open in IMG/M
3300031092\|Ga0308204_10326741	Not Available	521	Open in IMG/M
3300031092\|Ga0308204_10336596	Not Available	515	Open in IMG/M
3300031548\|Ga0307408_100202733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1607	Open in IMG/M
3300031731\|Ga0307405_10003869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6980	Open in IMG/M
3300031731\|Ga0307405_11141178	Not Available	671	Open in IMG/M
3300031903\|Ga0307407_11034384	Not Available	636	Open in IMG/M
3300031911\|Ga0307412_10099579	Not Available	2053	Open in IMG/M
3300031911\|Ga0307412_10178192	All Organisms → cellular organisms → Bacteria	1596	Open in IMG/M
3300031911\|Ga0307412_10541117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	976	Open in IMG/M
3300031995\|Ga0307409_100443803	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → unclassified Nocardioidaceae → Nocardioidaceae bacterium	1251	Open in IMG/M
3300031995\|Ga0307409_100500167	Not Available	1183	Open in IMG/M
3300031995\|Ga0307409_100952508	Not Available	874	Open in IMG/M
3300032002\|Ga0307416_100659061	Not Available	1132	Open in IMG/M
3300032002\|Ga0307416_102089651	Not Available	668	Open in IMG/M
3300032004\|Ga0307414_10102869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2154	Open in IMG/M
3300032004\|Ga0307414_10313790	Not Available	1332	Open in IMG/M
3300032005\|Ga0307411_10863399	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	801	Open in IMG/M
3300032159\|Ga0268251_10144581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	891	Open in IMG/M
3300032159\|Ga0268251_10166241	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Thermoactinomycetaceae	843	Open in IMG/M
3300032159\|Ga0268251_10263971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	701	Open in IMG/M
3300032159\|Ga0268251_10397654	Not Available	596	Open in IMG/M
3300032159\|Ga0268251_10488619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → unclassified Pseudonocardiales → Pseudonocardiales bacterium	549	Open in IMG/M
3300033550\|Ga0247829_10471786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1037	Open in IMG/M
3300033550\|Ga0247829_11167526	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	638	Open in IMG/M
3300034172\|Ga0334913_060433	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.03%
Host-Associated	Host-Associated	37.97%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.43%
Plants	Host-Associated → Plants	37.97%
Aquatic	Environmental → Aquatic	7.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	53.16%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.29%
Roots	Host-Associated → Plants → Roots	8.86%
Phylloplane	Host-Associated → Plants → Phylloplane	8.86%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.70%
Freshwater	Environmental → Aquatic → Freshwater	3.80%
Sediment	Environmental → Aquatic → Sediment	3.80%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.27%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.27%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.24%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.66%
Sand	Environmental → Terrestrial → Soil → Sand	12.03%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	8.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	8.86%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.80%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.90%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.90%
Loam	Environmental → Terrestrial → Soil → Loam	1.90%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.27%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.27%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.63%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.18%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.66%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	12.03%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	8.86%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	8.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.06%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.80%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.90%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.90%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.90%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.90%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.27%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.27%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.27%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.63%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	0.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.63%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	20.89%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	12.03%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	9.49%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	8.86%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	8.86%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	8.23%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.16%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.53%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.53%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.90%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.90%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.90%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.90%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.27%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.27%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.27%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.27%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.63%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	0.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.63%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009799	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30	Environmental	Open in IMG/M
3300009801	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_20_30	Environmental	Open in IMG/M
3300009806	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009814	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60	Environmental	Open in IMG/M
3300009815	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10	Environmental	Open in IMG/M
3300009818	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_30_40	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300009836	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011107	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAC (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014965	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T2	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300027056	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027068	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027332	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_30_40 (SPAdes)	Environmental	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027695	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027952	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300027961	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40 (SPAdes)	Environmental	Open in IMG/M
3300028711	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_150	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030830	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_368 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031039	Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 6C (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034172	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 9HMS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_13144320	2124908045	Soil	VPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
F24TB_121292592	3300000550	Soil	MPEGEPCPYCAHLAPNPDELRLHLMHLHPEVEPEPDWWD
F14TC_1001187711	3300000559	Soil	MPEGEPCPYCAHLAPNPDELRLHLMHLHPEVEPEPDWWDRDAVPPPLV*
F14TC_1001335454	3300000559	Soil	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW*
JGI10216J12902_1074446672	3300000956	Soil	MPEGEPCPYCAYLAPNPEELRAHLLHLHPEAEPEPDWWDPDAVQRPLLG*
JGI10216J12902_1158635371	3300000956	Soil	VPEGEPCPYCAHLAPNPEELRLHLLHLHLLHLHPEVEPEPDWWDRDAVPPPPLLL*
JGI25407J50210_100038821	3300003373	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPEELRAHLLHLHPEVEPEPDWWDRDAVPP
JGI25407J50210_100097603	3300003373	Tabebuia Heterophylla Rhizosphere	MYCAHLAASPEDLRQHLIHLHPEAEPEPDWWDPDAVEPPLLH*
JGI25407J50210_100230912	3300003373	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPDELRQHLLHLHPEVEPEPDWWDRDAVPPPAVF*
JGI25407J50210_100241781	3300003373	Tabebuia Heterophylla Rhizosphere	AGEGSDDEHIREETAVPEGEPCPYCAHLAPNPEELRAHLLHLHPEVEPEPDWWDRDAVPPPGPF*
JGI25407J50210_100294312	3300003373	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAYLAPNPEELRAHLQHLHPEVEPEPDWWDPDAVPPPVLF*
JGI25407J50210_100333404	3300003373	Tabebuia Heterophylla Rhizosphere	MPEGEPCPYCAHLAPNPEELRLHLLHLHPEAEPEPDWWDRDAVPPPLL*
JGI25407J50210_100499942	3300003373	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAANPEDLRQHLMHLHPEVEPDPDWWDPDAVEAPPLL*
JGI25407J50210_100515952	3300003373	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPDELRQHLLHLHPEVEPEPDWHDPDAVPPPPLLL*
JGI25407J50210_101755092	3300003373	Tabebuia Heterophylla Rhizosphere	LVPEGEPCPYCAHLAPNPDELRQHLVHLHPEVEPEPDWWDPDAVAPPAW*
Ga0063356_1026305841	3300004463	Arabidopsis Thaliana Rhizosphere	VPEGEPCPYCAHLAPNPDELRAHLEHLHPEVEPEPDWWDPDAVPPPALF*
Ga0063356_1057312401	3300004463	Arabidopsis Thaliana Rhizosphere	VSAAEEETTVPEGEPCPYCAYLAPNPEELRAHLEHLHPEVEPDPDWWDRDAVPPPVLF*
Ga0062595_1026476362	3300004479	Soil	VPEGEPCPYCAYLAPNPEELRAHLEHLHPEVEPDPDWWDRDAVPPPVLF*
Ga0070668_1002842162	3300005347	Switchgrass Rhizosphere	MSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0058697_100200144	3300005562	Agave	VPEGEACPYCAYLAPNPEELRAHLEHLHPEVEPDPEWWDPDAVPPPAI*
Ga0058697_100397712	3300005562	Agave	VPEGEPCPYCAHLAPNPDELRAHLEHLHPEVEPEPDWWDPDAVTPPALF*
Ga0058697_100538582	3300005562	Agave	VPEGEPCPYCAHLAPNPDELRAHLEHFHPEVEPEPDWWDPDAVPPPALF*
Ga0058697_102983192	3300005562	Agave	VPEGEPCPYCAHLAPNPDELRSHLEHLHPEVEPEPDWWDPDAVEPPVFF*
Ga0058697_103932301	3300005562	Agave	ALAESASERRRRVPEGEPCPYCAHLAPNPDELRAHLEHFHPEVEPEPDWWDPDAVPPPALF*
Ga0058697_106541281	3300005562	Agave	VPEGEPCPYCAHLAPNPDELRAHLQHLHPEVEPEPDWWDPDAVTPPALF*
Ga0058697_107418841	3300005562	Agave	VPQGEPCPYCAYLAANPEELRQHLLHLHPEAEPEPDWWDPEAVPRPLLL*
Ga0081455_100070896	3300005937	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDPYAVQPPLLL*
Ga0081455_100119415	3300005937	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDPDAVTPPAVF*
Ga0081538_100046994	3300005981	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVEPPAFF*
Ga0081538_1001263610	3300005981	Tabebuia Heterophylla Rhizosphere	MPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVPPPLL*
Ga0081538_100910542	3300005981	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPEELRAHLLNVHPQVEPEPDWWDRDAVPPPPLFG*
Ga0081538_101166313	3300005981	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAHLAPNPDELRQHLLHLHPEVEPEPDWWDRDAVAPPALW*
Ga0081538_101321852	3300005981	Tabebuia Heterophylla Rhizosphere	MSTSREETAVPEGEPCPYCAHLAPNPEELRAHLLHLHPEVEPEPDWWDRDAVPPPALF*
Ga0081539_100878612	3300005985	Tabebuia Heterophylla Rhizosphere	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDPDAVPRPLLL*
Ga0081539_104073021	3300005985	Tabebuia Heterophylla Rhizosphere	RPARRLGIYRGERSGRERLRGENRVPEGEPCPYCAHLAPTADELRMHLMHLHPEVEPEPDWWDPDAVAPPPLF*
Ga0074048_134141351	3300006581	Soil	ERHAMSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0074057_118825731	3300006605	Soil	PEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0075428_1002065702	3300006844	Populus Rhizosphere	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDPDAVTPPAVW*
Ga0114129_103711992	3300009147	Populus Rhizosphere	VGWEETKVPEGEPCPYCAHLAPNPDELRSHLEHLHPEVEPEPDWWDPDAVEPPVFF*
Ga0114129_106830232	3300009147	Populus Rhizosphere	VPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPA
Ga0126307_105822521	3300009789	Serpentine Soil	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0105075_10512332	3300009799	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLS*
Ga0105056_10639502	3300009801	Groundwater Sand	VPEGEPCPYCAHLAANPEELRQHLLHLHPEVEPEPDWWDPDAVEPPLLL*
Ga0105081_10436452	3300009806	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDPDAVEPPLLL*
Ga0105084_10695302	3300009811	Groundwater Sand	MPEGEPCPYCAYLAPNPEELRAHLQHLHPEAEPEPDWWDPDAVPRPLLG*
Ga0105082_11137043	3300009814	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL*
Ga0105070_10615341	3300009815	Groundwater Sand	EGEPCPYCAHLAANPEDLRQHLLHLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL*
Ga0105072_10920821	3300009818	Groundwater Sand	RVSARFWEETKVPEGEPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDPDAAEPPLLL
Ga0105066_10703521	3300009822	Groundwater Sand	VPEGEPCPYCAHLAANPEELRQHLLHLHPEVEPEPDWWDPDAVAPPVLF*
Ga0105068_11135561	3300009836	Groundwater Sand	ETKVPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLS*
Ga0126313_100017108	3300009840	Serpentine Soil	VPEGEPCPYCAHLSPNPDELRQHLLHLHPEVEPEPDWWDPDAVPPPPLLP*
Ga0126313_100801192	3300009840	Serpentine Soil	VPEGEPCPYCAHLAPNPEELRAHLEHLHPEVEPEPDWWDPDAVPPPALF*
Ga0126305_105636711	3300010036	Serpentine Soil	RVPEGEPCPYCAHLAPNPDELRLHLMHLHPEVEPEPDWWDPDAVAPPPLF*
Ga0126305_112834162	3300010036	Serpentine Soil	MPEGEPCPYCAHLAPNPDELRLHLMHLHPEVEPEPDWWDPDAVPPPPLLP*
Ga0126304_106079431	3300010037	Serpentine Soil	VPEGEPCPYCSHLAPNPEELRLHLIHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0126312_100467171	3300010041	Serpentine Soil	HATSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0126312_101504972	3300010041	Serpentine Soil	VPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPP
Ga0126312_104402281	3300010041	Serpentine Soil	PEGEPCPYCAQLAPNPDELRMHLMHLHPEVEPEPDWWDPDAIAPPPLF*
Ga0126310_104856361	3300010044	Serpentine Soil	VPEGEPCPYCAYLAPNPEELRAHLQHLHPEVEPEPD
Ga0126311_103432681	3300010045	Serpentine Soil	VPEGEPCTYCAYLAANPEELRQHLLHLHPEVEPEPDWWD
Ga0126311_115800132	3300010045	Serpentine Soil	REETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF*
Ga0126321_11198012	3300010145	Soil	WEETKVPEGEPCPYCAHLAPNPDELRSHLEHLHPEVEPEPDWWDPDAVEPPVFF*
Ga0126321_11550721	3300010145	Soil	RRERAFREERRVPEGEPCPYCAYLAPNPEELRAHLQHLHPEVEPEPDWWDPDAVPPPVLF
Ga0126321_14159181	3300010145	Soil	RSAGERRREETKVPEGEPCPYCAHLAPNPDELRAHLQHLHPEVEPEPDWWDPDAVTPPALF*
Ga0126306_103520083	3300010166	Serpentine Soil	YCAHLAPNPEELRAHLEHLHPEVEPEPDWWDPDAVPPPALF*
Ga0105239_120404161	3300010375	Corn Rhizosphere	MSGVREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0138505_1000627302	3300010999	Soil	EETKVPEGGPCPYCAHLAPNPEELRAHLEHLHPEVEPEPDWWDPDAVPPPALF*
Ga0151490_13937202	3300011107	Soil	MSGFREETTVPEGGPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0137372_100764043	3300012350	Vadose Zone Soil	LLGGVRVAVEKENGRKVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDPDAVVPPLLL*
Ga0137375_105385582	3300012360	Vadose Zone Soil	PYCVYLAANPEELRQHLLHLHPEVEPEPDWWDPYAVEPPLLP*
Ga0162651_1000677041	3300012938	Soil	ETTVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVPPPLW*
Ga0182000_100236053	3300014487	Soil	MSGFREETTVPEGEPCPYCAHLAPNPDELRQHLIHLHPEVEPEPDWWDRDAVEPPVLW*
Ga0120193_100180542	3300014965	Terrestrial	VPEGEPCPYCAHLAASPEDLRQHLIHLHPEAEPEPDWWDPDAVEPPLLH*
Ga0132258_1000535629	3300015371	Arabidopsis Rhizosphere	MSGFREETSVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW*
Ga0163161_115638061	3300017792	Switchgrass Rhizosphere	MSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0190266_105925231	3300017965	Soil	TVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW
Ga0184610_11192352	3300017997	Groundwater Sediment	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDRDAVPPPLW
Ga0184608_103104052	3300018028	Groundwater Sediment	MSGCREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0184608_104161081	3300018028	Groundwater Sediment	PSLGREAGSAHAQRRRPKVPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL
Ga0184638_10046545	3300018052	Groundwater Sediment	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL
Ga0184635_100059705	3300018072	Groundwater Sediment	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW
Ga0184612_101084865	3300018078	Groundwater Sediment	VPEGEPCPYCAYLAANPEEFRQHLLHLHPEVEQEPGWWDPAAAP
Ga0190275_102341692	3300018432	Soil	MPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPLL
Ga0190274_100110502	3300018476	Soil	MPEGEPCPYCAHLAPNPEELRLHLLHLHPEAEPEPDWWDRDAVPPPLL
Ga0190274_121018242	3300018476	Soil	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0190274_122283672	3300018476	Soil	VPEGEPCPYCAHLAANPEELRQHLLHLHPEVEPEPDWWDPDAVTPPLLW
Ga0184641_10364212	3300019254	Groundwater Sediment	SAFREETAVPEGEPCPYCAYLASNPEELRQHLLHLHPEVEPEPDWWDRDAVEPPVLW
Ga0190267_105572463	3300019767	Soil	EPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDPDAVTPPVLW
Ga0222625_10228313	3300022195	Groundwater Sediment	EQCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVPPPLW
Ga0222625_12615031	3300022195	Groundwater Sediment	PYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVPPPLW
Ga0209879_10042563	3300027056	Groundwater Sand	VPEGEPCPYCAHLAANPEELRQHLLHLHPEVEPEPDWWDPDAVEPPLLL
Ga0209879_10231242	3300027056	Groundwater Sand	CPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL
Ga0209898_10408302	3300027068	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVPRPLLG
Ga0209861_10042543	3300027332	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLS
Ga0209874_10402162	3300027577	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLL
Ga0209874_10621092	3300027577	Groundwater Sand	VGRVSARFWEETKVPEGEPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDPDAVEPPLLL
Ga0209966_11447121	3300027695	Arabidopsis Thaliana Rhizosphere	VPEGEPCPYCAHLAPNPDELRAHLEHLHPEVEPEPDWWDPDAVPPPALF
Ga0209795_100447632	3300027718	Agave	VPEGEPCPYCAHLAPNPDELRSHLEHLHPEVEPEPDWWDPDAVEPPVFF
Ga0209795_100770652	3300027718	Agave	VPEGEPCPYCAYLAPNPEELRAHLQHLHPEVEPEPDWWDPDAVPPPVL
Ga0209461_100054883	3300027750	Agave	VPEGEPCPYCAYLAPNPEELRAHLEHLHPEVEPDPDWWDPDAVPPPAF
Ga0209461_101929951	3300027750	Agave	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDPDAVEPPAIF
Ga0207428_113176821	3300027907	Populus Rhizosphere	VSAAEEETTVPEGEPCPYCAYLAPNPEELRAHLEHLHPEVEPDPDWWDRDAVPPPVLF
Ga0209889_10446812	3300027952	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLLICGGTPGQRGIWVVDA
Ga0209889_11256312	3300027952	Groundwater Sand	MPEGEPCPYCAYLAPNPEELRAHLQHLHPEAEPEPDWWDPDAVPRPLLG
Ga0209859_10529382	3300027954	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEVEPEPDWWDPDAVEPPLLL
Ga0209853_10452342	3300027961	Groundwater Sand	VPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPL
Ga0307293_101926952	3300028711	Soil	MSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAATPPVLW
Ga0307316_103199321	3300028755	Soil	EGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307320_102476622	3300028771	Soil	VPEGEPCPYCAHLAPNPDELRMHLEHLHPEVEPEPDWWDPDAVSPPVFF
Ga0307320_102528872	3300028771	Soil	VPEGEPCPYCAHLAPNPEELRAHLEHLHPEVEPEPDWWDPDAVPPPALF
Ga0307282_103663021	3300028784	Soil	CPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0307302_100042195	3300028814	Soil	VPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDSDAVAPPVLW
Ga0307302_101316112	3300028814	Soil	AHSWEETKVPEGEPCPYCAHLAPNPDELRMHLEHLHPEVEPEPDWWDPDAVSPPVFF
Ga0307278_100026655	3300028878	Soil	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDPDAVPPPLLL
Ga0307278_100361113	3300028878	Soil	MSAFREETAVPEGEPCPYCAYLASNPEELRQHLLHLHPEVEPEPDWWDRDAVEPPVLW
Ga0307278_102828861	3300028878	Soil	EGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0307277_102870703	3300028881	Soil	MSAFREETAVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDA
Ga0268243_10325143	3300030510	Soil	CAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0308203_10976072	3300030829	Soil	AGERRREETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0308205_10025964	3300030830	Soil	QSAGRPSEKETTVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLL
Ga0308205_10141142	3300030830	Soil	ATSGFREETTVPEGEPCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0308205_10206981	3300030830	Soil	GRSSGERRREETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0308205_10505611	3300030830	Soil	EIKVPEGEPCPYCAHLAPNPDELRMHLEHLHPEVEPEPDWWDPDAVSPPVFF
Ga0308202_10999851	3300030902	Soil	SAGERRREETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0308202_11619002	3300030902	Soil	SASRPSEKETTVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW
Ga0308206_10057831	3300030903	Soil	ASRPSEKETTVPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW
Ga0308206_10461191	3300030903	Soil	VPEGEQCPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVPPPLW
Ga0308206_10751481	3300030903	Soil	SASACREEARVPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0308206_11229312	3300030903	Soil	GRSAGERRREETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPALF
Ga0308206_11274761	3300030903	Soil	REETKVPEGEPCPYCAHLAANPEDLRQHLLHLHPEAEPEPDWWDPDAVEPPLLL
Ga0308206_11356981	3300030903	Soil	WEEIKVPEGEPCPYCAHLAPNPDELRMHLEHLHPEVEPEPDWWDPDAVSPPVFF
Ga0102760_107850631	3300031039	Soil	TRVPEGEPCPYCAHLAPNPDELRMHLLHLHPEVEPEPDWWDPDAVAPPPLF
Ga0308204_100618271	3300031092	Soil	RSAGERRREETKVPEGEPCPYCAHLAPNPDELRAHLLHLHPEVEPEPDWWDPDAVTPPAL
Ga0308204_103267411	3300031092	Soil	RLRGETRVPEGEPCPYCAHLAPNPDELRIHLMHLHPEVEPEPDWWDPDAVAPPPLF
Ga0308204_103365961	3300031092	Soil	ASACREEARVPEGEPCVYCAYLAPNPEELRQHLLHLHPEVEPEPDWWDRGAIPPPPLLL
Ga0307408_1002027331	3300031548	Rhizosphere	MPEGEPCPYCAHLAPNPDELRLHLMHLHPEVEPEPDWWDRDAVPPPLV
Ga0307405_100038697	3300031731	Rhizosphere	VPEGEPCPYCAHLSPNPDELRQHLLHLHPEVEPEPDWWDPDAVPPPPLLP
Ga0307405_111411781	3300031731	Rhizosphere	VPEGEPCPYCAHLSPNPDELRQHLLHLHPEVEPEPDWWDRDAVA
Ga0307407_110343841	3300031903	Rhizosphere	ESASERRPGVPEGEPCTYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAIPPPPLLL
Ga0307412_100995793	3300031911	Rhizosphere	VPEGEPCVYCAYLAPNPEELRQHLLHLHPEVEPEPDWWDRDAVAPPVLW
Ga0307412_101781921	3300031911	Rhizosphere	TRVPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307412_105411173	3300031911	Rhizosphere	VPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWD
Ga0307409_1004438031	3300031995	Rhizosphere	VPEGEPCPYCAHLAPHPEELRLHLLHLHPEVEPEPDWWD
Ga0307409_1005001672	3300031995	Rhizosphere	VPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307409_1009525081	3300031995	Rhizosphere	REETRVPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307416_1006590611	3300032002	Rhizosphere	ASREETRVPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307416_1020896511	3300032002	Rhizosphere	VPEGEPCPYCAHLAPHPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLLL
Ga0307414_101028694	3300032004	Rhizosphere	YCAYLAANPEELRAHLQHLHPEVEPEPDWWDPDAVPPPVLF
Ga0307414_103137902	3300032004	Rhizosphere	VPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPLLL
Ga0307411_108633992	3300032005	Rhizosphere	VPEGEPCPYCAHLAPNPEELRLHLLHLHPEVEPEPDWWDRDAVPPPPLL
Ga0268251_101445812	3300032159	Agave	SAGERRREETKVPEGEPCPYCAHLAPNPDELRAHLEHLHPEVEPEPDWWDPDAVTPPALF
Ga0268251_101662412	3300032159	Agave	VPEGEPCPYCAYLAPNPEELRAHLEHLHPEVEPDPEWWDPDAVPP
Ga0268251_102639712	3300032159	Agave	ALAESASERRRRVPEGEPCPYCAHLAPNPDELRAHLEHFHPEVEPEPDWWDPDAVPPPAL
Ga0268251_103976542	3300032159	Agave	CPYCAHLAPNPEELRQHLLHLHPEVEPEPDWWDPDAVEPPAIF
Ga0268251_104886192	3300032159	Agave	GYRSARQCRPWEETKVPEGEPCPYCAHLAPNPDELRSHLEHLHPEVEPEPDWWDPDAVEPPVFF
Ga0247829_104717864	3300033550	Soil	EPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEPPLLW
Ga0247829_111675261	3300033550	Soil	VPEGEPCPYCAYLAANPEELRQHLLHLHPEVEPEPDWWDRDAVEP
Ga0334913_060433_355_504	3300034172	Sub-Biocrust Soil	VPEGEPCPYCAHLAPNPDELRAHLEHFHPEVEPEPDWWDPDAVPPPALF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F042318

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences