NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F041405

Metagenome / Metatranscriptome Family F041405

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F041405
Family Type Metagenome / Metatranscriptome
Number of Sequences 160
Average Sequence Length 41 residues
Representative Sequence LVSEIEKAKSVDAAATALAERVRLLKEAARHGLSRREVAP
Number of Associated Samples 140
Number of Associated Scaffolds 160

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 99.38 %
% of genes from short scaffolds (< 2000 bps) 90.00 %
Associated GOLD sequencing projects 130
AlphaFold2 3D model prediction Yes
3D model pTM-score0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.750 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(20.000 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(49.375 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.12%    β-sheet: 0.00%    Coil/Unstructured: 55.88%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 160 Family Scaffolds
PF01817CM_2 85.00
PF00793DAHP_synth_1 12.50
PF02153PDH_N 1.88
PF01144CoA_trans 0.62

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 160 Family Scaffolds
COG1605Chorismate mutaseAmino acid transport and metabolism [E] 85.00
COG0287Prephenate dehydrogenaseAmino acid transport and metabolism [E] 1.88
COG1788Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunitLipid transport and metabolism [I] 0.62
COG2057Acyl-CoA:acetate/3-ketoacid CoA transferase, beta subunitLipid transport and metabolism [I] 0.62
COG4670Acyl CoA:acetate/3-ketoacid CoA transferaseLipid transport and metabolism [I] 0.62

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.75 %
UnclassifiedrootN/A1.25 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10777162All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300002245|JGIcombinedJ26739_100224082All Organisms → cellular organisms → Bacteria1772Open in IMG/M
3300002909|JGI25388J43891_1049071All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes631Open in IMG/M
3300002914|JGI25617J43924_10087049All Organisms → cellular organisms → Bacteria1128Open in IMG/M
3300004633|Ga0066395_10481592All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes712Open in IMG/M
3300005436|Ga0070713_100305522All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1466Open in IMG/M
3300005437|Ga0070710_11308275All Organisms → cellular organisms → Bacteria → Acidobacteria539Open in IMG/M
3300005467|Ga0070706_100812777All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300005533|Ga0070734_10764821All Organisms → cellular organisms → Bacteria549Open in IMG/M
3300005537|Ga0070730_10122790All Organisms → cellular organisms → Bacteria1780Open in IMG/M
3300005547|Ga0070693_101256939All Organisms → cellular organisms → Bacteria571Open in IMG/M
3300005559|Ga0066700_10571878All Organisms → cellular organisms → Bacteria788Open in IMG/M
3300005568|Ga0066703_10235327All Organisms → cellular organisms → Bacteria1113Open in IMG/M
3300005591|Ga0070761_11019191All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300005617|Ga0068859_100560069All Organisms → cellular organisms → Bacteria1237Open in IMG/M
3300005712|Ga0070764_10525589All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus714Open in IMG/M
3300005994|Ga0066789_10044764All Organisms → cellular organisms → Bacteria1946Open in IMG/M
3300006050|Ga0075028_100613962All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes647Open in IMG/M
3300006172|Ga0075018_10454516All Organisms → cellular organisms → Bacteria → Acidobacteria660Open in IMG/M
3300006173|Ga0070716_101285853All Organisms → cellular organisms → Bacteria591Open in IMG/M
3300006642|Ga0075521_10432018All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes642Open in IMG/M
3300006797|Ga0066659_11351059All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300006903|Ga0075426_10543041All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes865Open in IMG/M
3300007265|Ga0099794_10613744All Organisms → cellular organisms → Bacteria → Acidobacteria576Open in IMG/M
3300007265|Ga0099794_10687263All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300007788|Ga0099795_10174766All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes894Open in IMG/M
3300007788|Ga0099795_10408200All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300009038|Ga0099829_10357505All Organisms → cellular organisms → Bacteria1203Open in IMG/M
3300009088|Ga0099830_10201314All Organisms → cellular organisms → Bacteria1558Open in IMG/M
3300009088|Ga0099830_10368107All Organisms → cellular organisms → Bacteria1158Open in IMG/M
3300009088|Ga0099830_11551727All Organisms → cellular organisms → Bacteria552Open in IMG/M
3300009090|Ga0099827_11839289All Organisms → cellular organisms → Bacteria528Open in IMG/M
3300009143|Ga0099792_10605563All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300009521|Ga0116222_1113931All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → environmental samples → uncultured Clostridium sp.1164Open in IMG/M
3300009672|Ga0116215_1069416All Organisms → cellular organisms → Bacteria1589Open in IMG/M
3300009698|Ga0116216_10604843All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes660Open in IMG/M
3300010048|Ga0126373_12080985All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes630Open in IMG/M
3300010326|Ga0134065_10001392All Organisms → cellular organisms → Bacteria5648Open in IMG/M
3300010335|Ga0134063_10446096All Organisms → cellular organisms → Bacteria640Open in IMG/M
3300010343|Ga0074044_10202794All Organisms → cellular organisms → Bacteria1317Open in IMG/M
3300010358|Ga0126370_12116080All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300010361|Ga0126378_12933047All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300010376|Ga0126381_105102809All Organisms → cellular organisms → Bacteria → Acidobacteria503Open in IMG/M
3300010398|Ga0126383_12947805All Organisms → cellular organisms → Bacteria556Open in IMG/M
3300010937|Ga0137776_1124005All Organisms → cellular organisms → Bacteria775Open in IMG/M
3300011120|Ga0150983_12239311All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300011120|Ga0150983_13731615All Organisms → cellular organisms → Bacteria605Open in IMG/M
3300011271|Ga0137393_10520345All Organisms → cellular organisms → Bacteria → Acidobacteria1020Open in IMG/M
3300012202|Ga0137363_10859449All Organisms → cellular organisms → Bacteria → Acidobacteria770Open in IMG/M
3300012205|Ga0137362_10118779All Organisms → cellular organisms → Bacteria2241Open in IMG/M
3300012207|Ga0137381_10935000All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes749Open in IMG/M
3300012362|Ga0137361_10982987All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes763Open in IMG/M
3300012363|Ga0137390_11640656All Organisms → cellular organisms → Bacteria579Open in IMG/M
3300012582|Ga0137358_10609580All Organisms → cellular organisms → Bacteria → Acidobacteria732Open in IMG/M
3300012917|Ga0137395_10828669All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes670Open in IMG/M
3300012925|Ga0137419_11265914All Organisms → cellular organisms → Bacteria → Acidobacteria619Open in IMG/M
3300012927|Ga0137416_10381920All Organisms → cellular organisms → Bacteria1189Open in IMG/M
3300012929|Ga0137404_11859407All Organisms → cellular organisms → Bacteria → Acidobacteria560Open in IMG/M
3300012971|Ga0126369_10845691All Organisms → cellular organisms → Bacteria → Acidobacteria999Open in IMG/M
3300014325|Ga0163163_11834900All Organisms → cellular organisms → Bacteria → Acidobacteria666Open in IMG/M
3300014658|Ga0181519_10744861Not Available605Open in IMG/M
3300015053|Ga0137405_1300009All Organisms → cellular organisms → Bacteria1714Open in IMG/M
3300015053|Ga0137405_1417798All Organisms → cellular organisms → Bacteria1332Open in IMG/M
3300015241|Ga0137418_11022503All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300016270|Ga0182036_10198709All Organisms → cellular organisms → Bacteria1468Open in IMG/M
3300016270|Ga0182036_10582281All Organisms → cellular organisms → Bacteria895Open in IMG/M
3300016319|Ga0182033_10648447All Organisms → cellular organisms → Bacteria921Open in IMG/M
3300016357|Ga0182032_10877822All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae761Open in IMG/M
3300016387|Ga0182040_10765727All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300016404|Ga0182037_11355743All Organisms → cellular organisms → Bacteria → Acidobacteria628Open in IMG/M
3300016445|Ga0182038_10619313All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300017822|Ga0187802_10238133All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus profundi703Open in IMG/M
3300017946|Ga0187879_10330118All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes846Open in IMG/M
3300017961|Ga0187778_11040177All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300017973|Ga0187780_10125853All Organisms → cellular organisms → Bacteria1772Open in IMG/M
3300017994|Ga0187822_10338178All Organisms → cellular organisms → Bacteria540Open in IMG/M
3300017995|Ga0187816_10060410All Organisms → cellular organisms → Bacteria1595Open in IMG/M
3300018017|Ga0187872_10161453All Organisms → cellular organisms → Bacteria1063Open in IMG/M
3300018047|Ga0187859_10463086All Organisms → cellular organisms → Bacteria702Open in IMG/M
3300018062|Ga0187784_11352049All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300018088|Ga0187771_11585929All Organisms → cellular organisms → Bacteria → Acidobacteria556Open in IMG/M
3300018088|Ga0187771_11636205All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300020199|Ga0179592_10079891All Organisms → cellular organisms → Bacteria1500Open in IMG/M
3300020199|Ga0179592_10082061All Organisms → cellular organisms → Bacteria1479Open in IMG/M
3300020199|Ga0179592_10484709All Organisms → cellular organisms → Bacteria531Open in IMG/M
3300020579|Ga0210407_10717714All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300020580|Ga0210403_10077659All Organisms → cellular organisms → Bacteria2671Open in IMG/M
3300020580|Ga0210403_10471908All Organisms → cellular organisms → Bacteria1021Open in IMG/M
3300020580|Ga0210403_11241734All Organisms → cellular organisms → Bacteria → Acidobacteria572Open in IMG/M
3300020580|Ga0210403_11260550All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300020583|Ga0210401_11288569All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300021168|Ga0210406_10019505All Organisms → cellular organisms → Bacteria → Proteobacteria6347Open in IMG/M
3300021178|Ga0210408_10355971All Organisms → cellular organisms → Bacteria1167Open in IMG/M
3300021180|Ga0210396_10126060All Organisms → cellular organisms → Bacteria2309Open in IMG/M
3300021363|Ga0193699_10163978All Organisms → cellular organisms → Bacteria → Acidobacteria917Open in IMG/M
3300021402|Ga0210385_11247320All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300021403|Ga0210397_11281531All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus profundi569Open in IMG/M
3300021407|Ga0210383_10110418All Organisms → cellular organisms → Bacteria2319Open in IMG/M
3300021420|Ga0210394_10190413All Organisms → cellular organisms → Bacteria1788Open in IMG/M
3300021420|Ga0210394_10980979All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae → Rhodothermus → Rhodothermus profundi733Open in IMG/M
3300021559|Ga0210409_10035340All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes4768Open in IMG/M
3300021560|Ga0126371_10870945All Organisms → cellular organisms → Bacteria1045Open in IMG/M
3300022557|Ga0212123_10259600All Organisms → cellular organisms → Bacteria1241Open in IMG/M
3300024288|Ga0179589_10039767All Organisms → cellular organisms → Bacteria1712Open in IMG/M
3300025905|Ga0207685_10314821All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300025910|Ga0207684_11170118All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300025932|Ga0207690_10457440All Organisms → cellular organisms → Bacteria1027Open in IMG/M
3300026291|Ga0209890_10045840All Organisms → cellular organisms → Bacteria1629Open in IMG/M
3300026304|Ga0209240_1199780All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300026328|Ga0209802_1224595All Organisms → cellular organisms → Bacteria687Open in IMG/M
3300026360|Ga0257173_1055431All Organisms → cellular organisms → Bacteria568Open in IMG/M
3300026497|Ga0257164_1001311All Organisms → cellular organisms → Bacteria2094Open in IMG/M
3300026524|Ga0209690_1061067All Organisms → cellular organisms → Bacteria1644Open in IMG/M
3300026551|Ga0209648_10361873All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300026557|Ga0179587_10061759All Organisms → cellular organisms → Bacteria2184Open in IMG/M
3300026800|Ga0207742_116374All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300026880|Ga0209623_1014188All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300027014|Ga0207815_1000638All Organisms → cellular organisms → Bacteria5396Open in IMG/M
3300027505|Ga0209218_1080940All Organisms → cellular organisms → Bacteria672Open in IMG/M
3300027528|Ga0208985_1020722All Organisms → cellular organisms → Bacteria1269Open in IMG/M
3300027565|Ga0209219_1146252All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300027605|Ga0209329_1046367All Organisms → cellular organisms → Bacteria922Open in IMG/M
3300027651|Ga0209217_1079689All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300027674|Ga0209118_1009141All Organisms → cellular organisms → Bacteria3460Open in IMG/M
3300027903|Ga0209488_10377775All Organisms → cellular organisms → Bacteria1051Open in IMG/M
3300027986|Ga0209168_10048718All Organisms → cellular organisms → Bacteria2272Open in IMG/M
3300027986|Ga0209168_10534496All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300028536|Ga0137415_11398080All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300028906|Ga0308309_11902190All Organisms → cellular organisms → Bacteria502Open in IMG/M
3300029636|Ga0222749_10492444All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300030707|Ga0310038_10333371All Organisms → cellular organisms → Bacteria675Open in IMG/M
3300031545|Ga0318541_10171250All Organisms → cellular organisms → Bacteria1197Open in IMG/M
3300031572|Ga0318515_10338364All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300031716|Ga0310813_11601397All Organisms → cellular organisms → Bacteria608Open in IMG/M
3300031719|Ga0306917_10383673All Organisms → cellular organisms → Bacteria1095Open in IMG/M
3300031720|Ga0307469_10296421All Organisms → cellular organisms → Bacteria1329Open in IMG/M
3300031753|Ga0307477_10178362All Organisms → cellular organisms → Bacteria1480Open in IMG/M
3300031754|Ga0307475_10607521All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300031754|Ga0307475_10653957All Organisms → cellular organisms → Bacteria840Open in IMG/M
3300031754|Ga0307475_11281664All Organisms → cellular organisms → Bacteria → Acidobacteria568Open in IMG/M
3300031771|Ga0318546_11084086All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300031780|Ga0318508_1011202All Organisms → cellular organisms → Bacteria2025Open in IMG/M
3300031796|Ga0318576_10455683All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidetes Order II. Incertae sedis → Rhodothermaceae604Open in IMG/M
3300031796|Ga0318576_10549510All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300031833|Ga0310917_10565676All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300031859|Ga0318527_10118002All Organisms → cellular organisms → Bacteria1099Open in IMG/M
3300031912|Ga0306921_10965417All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300031959|Ga0318530_10349596All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300031962|Ga0307479_10408508All Organisms → cellular organisms → Bacteria1342Open in IMG/M
3300031962|Ga0307479_11384799All Organisms → cellular organisms → Bacteria → Acidobacteria662Open in IMG/M
3300031962|Ga0307479_11901119All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300032035|Ga0310911_10667898All Organisms → cellular organisms → Bacteria602Open in IMG/M
3300032174|Ga0307470_11282669All Organisms → cellular organisms → Bacteria599Open in IMG/M
3300032205|Ga0307472_100890158All Organisms → cellular organisms → Bacteria823Open in IMG/M
3300032783|Ga0335079_10186665All Organisms → cellular organisms → Bacteria2307Open in IMG/M
3300032805|Ga0335078_12727850All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300032828|Ga0335080_10104004All Organisms → cellular organisms → Bacteria3151Open in IMG/M
3300033289|Ga0310914_11819447All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300033820|Ga0334817_042124All Organisms → cellular organisms → Bacteria906Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil20.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.12%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil6.88%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil6.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.38%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.12%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.12%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.50%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil2.50%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.50%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland1.88%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.88%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.88%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.88%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.25%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.25%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.25%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.62%
SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment0.62%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.62%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.62%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil0.62%
SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Soil0.62%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.62%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.62%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.62%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.62%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002909Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_2_20cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005533Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1EnvironmentalOpen in IMG/M
3300005537Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1EnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005994Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006172Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006642Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE PermafrostAB12-DEnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009672Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaGEnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010937Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012205Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014658Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaGEnvironmentalOpen in IMG/M
3300015053Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300015241Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016357Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017822Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300017995Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1EnvironmentalOpen in IMG/M
3300018017Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40EnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021363Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3c2EnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300024288Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungalEnvironmentalOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026291Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026328Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 (SPAdes)EnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026524Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300026800Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 43 (SPAdes)EnvironmentalOpen in IMG/M
3300026880Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027014Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027528Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027565Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027605Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300027986Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031572Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031719Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031780Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21EnvironmentalOpen in IMG/M
3300031796Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031859Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031959Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032035Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032783Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032828Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033820Peat soil microbial communities from Stordalen Mire, Sweden - 713 E-2-DEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1077716223300001593Forest SoilANAAVVGSTLVSEIENAKSVEAASAALAARVRSLKQAATHGLSRREVAP*
JGIcombinedJ26739_10022408243300002245Forest SoilIENAKSVGAASSALAALVRLLKDAATHGLSRREVAP*
JGI25388J43891_104907133300002909Grasslands SoilVSEIEKAKSVDGAAAALAARVRSLKEAARHGLSRREVAP*
JGI25617J43924_1008704913300002914Grasslands SoilVSEIEKAMSVDAAAAALAERVRSFKQAARHGLSRREVAP*
Ga0066395_1048159213300004633Tropical Forest SoilAVVGSALVAEIEAAANIEAAAVALRDRVHSLKEAGRKGLSRREASL*
Ga0070713_10030552233300005436Corn, Switchgrass And Miscanthus RhizosphereLVSEIEQAKSVDAACTALAERVRSLKQAATHGLSRREVAP*
Ga0070710_1130827513300005437Corn, Switchgrass And Miscanthus RhizosphereQAKSVDAAAAALAERVRSLKSAGSQGLSRREAARREVAT*
Ga0070706_10081277733300005467Corn, Switchgrass And Miscanthus RhizosphereVGSALVSEIEKSASVDAACTALRGRVHALKDAARRGLSRREATL*
Ga0070734_1076482113300005533Surface SoilGSALVSEIEKAESVDAAAQALGAKIRSLKEAGRKGLSRREVAP*
Ga0070730_1012279043300005537Surface SoilVSEIEKAPSVEAASAALRERIKGLKEAGRRGLSRREATI*
Ga0070693_10125693923300005547Corn, Switchgrass And Miscanthus RhizosphereDAAVVGSALVSEIENAKSIEAACGALDARVRSLKQAATHGLSRREVAP*
Ga0066700_1057187833300005559SoilSEIEKAKSVDGAANALAERVRSLKEAARHGLSRREVAP*
Ga0066703_1023532733300005568SoilSALVSEIEKAPSVDAAAVALGDRIRALKQAARRGLSRREVAP*
Ga0070761_1101919113300005591SoilSALVSEIEKAESVDAAAQALGAKIRSLKEAGKKGLSRREVAP*
Ga0068859_10056006913300005617Switchgrass RhizosphereALVSEIEQAKSVDAAATALAERVRLFKSAGSQGLSRREAASREVAT*
Ga0070764_1052558933300005712SoilDAAVIGSALVSEIENAKSVDAAATALAARIRLLKEAARHGLSRREVAL*
Ga0066789_1004476443300005994SoilLVSEIENAKSVDAAAEALATRIRSLKQAASHGLSRREVAP*
Ga0075028_10061396213300006050WatershedsAVVGSALVSEIEKASSTAVASAALRERIRALKEAGQKGLSRREATL*
Ga0075018_1045451613300006172WatershedsANAKSVADAVTALRAKVSSLKEAGRHGLSRREATP*
Ga0070716_10128585333300006173Corn, Switchgrass And Miscanthus RhizosphereQAESVDAACSALASRVRSLKQAATHGLSRREVAP*
Ga0075521_1043201833300006642Arctic Peat SoilIEKAASTATACAALRERIHLLKEAGRKGLSRREATP*
Ga0066659_1135105913300006797SoilVVGSALVSEIEKAKFVDEAAAALRERVRSLKEAARHGLSRREVAP*
Ga0075426_1054304113300006903Populus RhizosphereVSEIEQAKSVDAAAAALAERVRSLKSAGNQGLSRREAASREVAT*
Ga0099794_1061374413300007265Vadose Zone SoilERAKSVDGAATALAERVRSLKDAARHGLSRREVAP*
Ga0099794_1068726313300007265Vadose Zone SoilIEKAQSVDSAASALGARIRSLKEAARHGLSRREVAK*
Ga0099795_1017476633300007788Vadose Zone SoilLADAAVVGSALVSEIEDAKSVDVASAALATRIRTLKQAATHGLSPREVAP*
Ga0099795_1040820023300007788Vadose Zone SoilLGGLADATDVGSALVAEIENAESGDAASAALAARVHSLKQAATHGLSRREVAP*
Ga0099829_1035750533300009038Vadose Zone SoilDAAVVGSALVSEIENAKSVEAAGTALAARVRSLKQAATHGLSRREVAP*
Ga0099830_1020131413300009088Vadose Zone SoilIEKAKSVEAAAAALSERVRSLKEAARHGLSRREVAP*
Ga0099830_1036810733300009088Vadose Zone SoilVSEIEKSKSAAAAALAERIRAFKAAAQHGLSRREVAP*
Ga0099830_1155172713300009088Vadose Zone SoilLVSEIEKASSVDAAAVALGDRIRALKQAARHGLSRREVAP*
Ga0099827_1183928913300009090Vadose Zone SoilVSEIENAKSVEAASVALAARVRSLKQAATHGLSRREVAP*
Ga0099792_1060556333300009143Vadose Zone SoilEIENAESVDAACAALAARIRTLKQAATHGLSRREVAP*
Ga0116222_111393133300009521Peatlands SoilAAVVGSALVSEIEKAPSPEAAAIALGGRVRALKEAARHGLSRREVAP*
Ga0116215_106941613300009672Peatlands SoilKAPSPEAAAIALGGRVRALKEAARHGLSRREVAP*
Ga0116216_1060484313300009698Peatlands SoilAAVVGSALVSEIEKARSPEAAATALRERVRALKEAARHGLSRREVAP*
Ga0126373_1208098513300010048Tropical Forest SoilLVSEIEKASTPGAAVGALRDRVHSFKAAARHGLSRREALP*
Ga0134065_1000139273300010326Grasslands SoilSEIEKAKSVDGAAAALAARVRSLKEAARHGLSRREVAP*
Ga0134063_1044609613300010335Grasslands SoilALVSEIEKAKSVDGAAAALAECVRLLKEAARHGLSRREVAP*
Ga0074044_1020279433300010343Bog Forest SoilLADAAVVGSALVSEIETAPSPVAAATALRARVKILKEAARRGLSRREATP*
Ga0126370_1211608013300010358Tropical Forest SoilEIEQAKSVDAAAAALAERVRSLKGAASQGLSRREVAT*
Ga0126378_1293304723300010361Tropical Forest SoilVSEIEKAPTPDAAARALRDRMHSFKEAARHGLSRREALP*
Ga0126381_10510280923300010376Tropical Forest SoilSALVAEIEKAPSVQDAADALRERVAKLKEAGRQGLSRREATR*
Ga0126383_1294780523300010398Tropical Forest SoilSALVTQIEAASNVEAAAAALRDRVHSLKEAGRKGLSRREATL*
Ga0137776_112400533300010937SedimentDAAVIGSSLVSEIEKASSIEAGAGTLAARIRSLKQAAQAGMSKREVAP*
Ga0150983_1223931123300011120Forest SoilEKAPSVEAAAVALGDRLHALKQAARHGLSRREVAP*
Ga0150983_1373161513300011120Forest SoilENAKSVEAAGAALGQRIRSLKQAATHGLSRREVAP*
Ga0137393_1052034513300011271Vadose Zone SoilEIEKAPSVDAASEALGNRIRALKQAARHGLSRREVAP*
Ga0137389_1167049013300012096Vadose Zone SoilSALVSEIANAKSVEAASAALAARVRSLKQAATHGLSRRPAPAHRGEVAP*
Ga0137363_1085944933300012202Vadose Zone SoilVGSALVSEIENAKSIDAACAALAARVSSLKQAATHGLSRREVAP*
Ga0137362_1011877943300012205Vadose Zone SoilALVSEIEKAMSVDAAAAALAERVRSFKQAARHGLSRREVAP*
Ga0137381_1093500013300012207Vadose Zone SoilIEKATSVDAAAAALGDRIRALKQAARHGLSRREVAP*
Ga0137361_1098298713300012362Vadose Zone SoilAVIGSALVSEIEKASSIAAAASALAAKIRPLKEAARHGLSRREVAP*
Ga0137390_1164065613300012363Vadose Zone SoilEIENAKSVEAASAALAGRIRSLKQAATHGLSRREVAP*
Ga0137358_1060958013300012582Vadose Zone SoilVSEIEKAKSVDGAATALAERVRSLKDAARHGLSRREVAP*
Ga0137395_1082866933300012917Vadose Zone SoilSEIEKAQSVDAAAVALGDRVRALKQAARRGLSRREVAP*
Ga0137419_1126591423300012925Vadose Zone SoilVVGSALVAEIEKAPSIEAACSALRERVHLLKEAGRKGLSRREATI*
Ga0137416_1038192013300012927Vadose Zone SoilEIEKAKSVEAAAAALSERVRSLKETARHGLSRREVGP*
Ga0137404_1185940713300012929Vadose Zone SoilLADAAVIGSALVSEIEKAHSVDAAASALAARIRSIKDAARHGLSRREVAP*
Ga0126369_1084569113300012971Tropical Forest SoilIEKAPTPDAAARALRDRMHSFKEAARHGLSRREALP*
Ga0163163_1183490023300014325Switchgrass RhizosphereVVGSALVSEIEQAKSVDAAATALAERVRLFKSAGSQGLSRREAASREVAT*
Ga0181519_1074486123300014658BogDAAVIGSALVSEIEKAPSPEAAAAALRTRVRALKEAASRGLSRREAST*
Ga0137405_130000913300015053Vadose Zone SoilVSEIEKAPSVEAAAAALGERIRALKQAARHGLSRREVAP*
Ga0137405_141779843300015053Vadose Zone SoilLADAAVIGSALVSEIEKAPSIDAAASALAEKIRPLKDAARHGLSRREVAP*
Ga0137418_1102250323300015241Vadose Zone SoilSEIEKAKSVDAAAAALAERVRSFKEAARHGLSRREVAP*
Ga0182036_1019870933300016270SoilGSALVSEIEKASSPDAAASALRMRIHSLKEAARHGLSRREATP
Ga0182036_1058228113300016270SoilIEKAPSVQDAADALRERVAKLKEAGRQGLSRREATR
Ga0182033_1064844713300016319SoilALVSEIEKAPTPDGAARALRERLHSFKEAARHGLSRREALP
Ga0182032_1087782233300016357SoilAAVVGSALVSEIEHAANPDAAAAALCERVRKLKEAGRHGLSRREATS
Ga0182040_1076572713300016387SoilEIEKAPSVQDAADALRERVAKLKEAGRQGLSRREATR
Ga0182037_1135574323300016404SoilGSALVSEVEKAPTPDAAARALRDRMHSFKEAARHGLSRREALP
Ga0182038_1061931333300016445SoilVVGSALVSEIEKASSVDAASAALRDRVRSLKDAARRGLSRREATP
Ga0187802_1023813333300017822Freshwater SedimentEKASSAESAVSALRERVQKLKEAGRHGLSRREASP
Ga0187879_1033011833300017946PeatlandTEIENANSVDAAAVALAARIRPLKEAARHGLSRREVAR
Ga0187778_1104017723300017961Tropical PeatlandVGSALVSEIEKASSPDAAVNALRDRIRSLKEAGRKGLSRREATS
Ga0187780_1012585313300017973Tropical PeatlandALVSEIEQAANPDAAASALRERVRKLKEAGRHGLSRREATP
Ga0187822_1033817813300017994Freshwater SedimentALVSEIERATSPDAAAAALRDRVQKLKEAARHGLSRREATP
Ga0187816_1006041033300017995Freshwater SedimentEHAANPDTAALALRERVQTLKEAGRHGLSRREATL
Ga0187872_1016145333300018017PeatlandIERAGSEAAAAKALGTRVRALKQAALQGLSRRGTEA
Ga0187859_1046308613300018047PeatlandSALVTEIENANSVDAAAVALAARIRPLKEAARHGLSRREVAR
Ga0187784_1135204913300018062Tropical PeatlandIEKAASPEAAATTLRERVRALKEAARHGLSRREATP
Ga0187771_1158592923300018088Tropical PeatlandEIEKATNPDAAAAALRARVQTLKEAARHGLSRREAIR
Ga0187771_1163620523300018088Tropical PeatlandEKAATPDAAASALRERVQKLKEAACRGLSRREAKR
Ga0179592_1007989133300020199Vadose Zone SoilVSEIEKAPSIDAAALALGNRIRALKEAARHGLSRREVAP
Ga0179592_1008206113300020199Vadose Zone SoilLVSEIEKAKSVDAAAAALAERVRLFKEAARHGLSRREVAP
Ga0179592_1048470913300020199Vadose Zone SoilDAAVVGSALVSEIEQASSVEAASAALRDRVTVLKEAGRKGLSRREATT
Ga0210407_1071771433300020579SoilVVGSALVSEIENAKSVEAASTALAARVRLFKQAATHGLSRREVAP
Ga0210403_1007765943300020580SoilEIEKAKSVDAAAVALGDRIRALKQAARRGLSRREVIP
Ga0210403_1047190833300020580SoilALVSEIEKAQSIEDAAASLGARIRALKEAARHGLSRREVAP
Ga0210403_1124173413300020580SoilCEIEKAQSADAAAFALAERIRSLKEAARHGLSRREAAP
Ga0210403_1126055013300020580SoilSEIEKSSSVEAACAALRERVSVLKEAGRRGLSRREATI
Ga0210401_1128856923300020583SoilLVSEIENAKSVEAASVALTTRIRSLKQAATHGLSRREVAP
Ga0210406_1001950593300021168SoilADAAVVGSALVSEIEKSSSVEAASAALRERVQMLKEAGRRGLSRREATI
Ga0210408_1035597113300021178SoilIEKAQSIDAASTSLGAKIRALKEAARHGLSRREVAP
Ga0210396_1012606043300021180SoilVGSSLVSEIEKAPSVEAACAALRERVRVFKEAGRRGLSRREATI
Ga0193699_1016397843300021363SoilSLVSEIEQSKTPDLAAAALSERVRLLKSVARNGLSRREVMS
Ga0210385_1124732013300021402SoilVGSALVSEIEQAKSVDAGAAALAEKVRSLKAAARHGLSRREVAT
Ga0210397_1128153113300021403SoilSEIEKAESVDAAAQVLGAKIRSLKEAGKKGLSRREVAP
Ga0210383_1011041843300021407SoilVVGSALVSEIAKATSVDAACAALRDRVHALKDAARRGLSRREATP
Ga0210394_1019041313300021420SoilVGSALVSEIEKAQSVDAAATALGNRIRALKEAARHGLSRREVAP
Ga0210394_1098097913300021420SoilEIEKSSSVEAASAALGERVSILKEAGRRGLSRREATI
Ga0210409_1003534013300021559SoilEIEKAPSVDAAALALGNRIRALKEAARHGLSRREVAP
Ga0126371_1087094533300021560Tropical Forest SoilEKASTPGAAVGALRDRVHSFKAAARHGLSRREALP
Ga0212123_1025960033300022557Iron-Sulfur Acid SpringAEVERAGSAAAAAQAVGERVRALKEAARHGISRREADSRRG
Ga0179589_1003976743300024288Vadose Zone SoilSEIEKAQSVDAAAVALGDCVRALKQAARRGLSRREVAP
Ga0207685_1031482113300025905Corn, Switchgrass And Miscanthus RhizosphereSALVSEIENEKSIDAACAALAARIRSLKQAATHGLSRREVAP
Ga0207684_1117011823300025910Corn, Switchgrass And Miscanthus RhizosphereLGGLGNAADVGSALVSEIEKSASVDAACTALRGRVHALKDAARRGLSRREATL
Ga0207690_1045744033300025932Corn RhizosphereALVSEIEQAKSVDAAATALAERVRLFKSAGSQGLSRREAASREVAT
Ga0209890_1004584033300026291SoilLVSEIENAKSVDAAAEALATRIRSLKQAASHGLSRREVAP
Ga0209240_119978023300026304Grasslands SoilVSEIENAKSVEAAGAALAARIRSLKQAATHGLSRREVAP
Ga0209802_122459513300026328SoilEIEKAASADAAARAVGERVRALKEAARQGMSRREVSR
Ga0257173_105543113300026360SoilGSVLVEEIERAASVDEAASAVAARIRSFKQAASQGLSRREARP
Ga0257164_100131143300026497SoilVIGSALVSEIEKAHSVDAAASALAARIRPLKDATRHGLSRREVAP
Ga0209690_106106713300026524SoilLVSEIEKAKSVDAAATALAERVRLLKEAARHGLSRREVAP
Ga0209648_1036187313300026551Grasslands SoilSEIENAKSVEAAGAALAARIRSLKQAATHGLSRREVAP
Ga0179587_1006175913300026557Vadose Zone SoilALVSEIEKAKSVDAAAAALAERVRLFKEAARHGLSRREVAP
Ga0207742_11637413300026800Tropical Forest SoilAVVGSALVSEIEKASSVETATAALRDRVQKLKEAGRHGLSRREATR
Ga0209623_101418833300026880Forest SoilVAEIEHAKTPQQAAKALHERIGILKEAARHGLSKREVAP
Ga0207815_1000638103300027014Tropical Forest SoilSEIEKASTPEAAARALRDRMHSFKEAARHGLSRREALP
Ga0209218_108094013300027505Forest SoilLADAAVIGSALVSEIEKADSVDAAAQALGAKIRSLKEAGKKGLSRREVAP
Ga0208985_102072233300027528Forest SoilAAVIGSALVTEIENANSVDAAAAALAARIRPLKQAARLGLSRREVTQ
Ga0209219_114625223300027565Forest SoilANAAVVGSTLVSEIENAKSVEAASAALAARVRSLKQAATHGLSRREVAP
Ga0209329_104636713300027605Forest SoilAVIGSALVSDIENARSVDDAATALAARIRSFKEAARHGLSRREVAL
Ga0209217_107968933300027651Forest SoilSEVEKASSPDAAANALRNRLRDLKEAGRQGLSRREVAT
Ga0209118_100914153300027674Forest SoilGSALVAEIEKAPSVEAAAAALGDRLRALKQAARHGLSRREVAP
Ga0209488_1037777533300027903Vadose Zone SoilAQSVDAAAAALAERVRSFKEAARHGLSRREAAMHRGEVAT
Ga0209168_1004871813300027986Surface SoilVVGSALVSEIEKAESVDAAAQALGAKIRSLKEAGKRGLSRREVAP
Ga0209168_1053449623300027986Surface SoilGGLADAAVIGSALVSEIEKADSVDAAAQALGAKIRSLKEAGKKGLSRREVAP
Ga0137415_1139808023300028536Vadose Zone SoilEIEKAKSVEAAAAALSERVRSLKETARHGLSRREVGP
Ga0308309_1190219023300028906SoilTSAPSINAAAAALAERVRSLKEAARRGLSRREVAT
Ga0222749_1049244413300029636SoilIGSSLVSEIENAKSVEAASAALATRIRSLKQAATHGLSRREVAP
Ga0310038_1033337113300030707Peatlands SoilGSALVSEIEKASSVEAAAAALADRIRALKQAARHGLSRREVAP
Ga0318541_1017125013300031545SoilVSEIEKGATVDTTAAALRDRLLQLKEAGRHGLSRRGAG
Ga0318515_1033836433300031572SoilVIGSALVSEIEKASTPGAAVGALRDRVRSFKAAARHGLSRREALP
Ga0310813_1160139713300031716SoilGSALVSEIEQAKSVDVGAAALAERIRSLKAAGTQGLSRREPVNRESTSREVAR
Ga0306917_1038367333300031719SoilSALVSEVEKAPTPDAAARALRDRMHSFKEAARHGLSRREALP
Ga0307469_1029642133300031720Hardwood Forest SoilSEIEKASSVEAASAALRDRVKMLKEAGRRGLSRREATI
Ga0307477_1017836233300031753Hardwood Forest SoilAAVVGSALVSEIENAKSVEAASTALAARVRSLKQAATHGLSRREVAP
Ga0307475_1060752113300031754Hardwood Forest SoilLVSEIENAKSVDAAVTALAARIRSFKEAARHGLSRREVAL
Ga0307475_1065395713300031754Hardwood Forest SoilGSALVAEIEKAPSIEAASAALRERVKVLKEAGRRGLSRREATI
Ga0307475_1128166413300031754Hardwood Forest SoilEKALSVEAACAALRDRLKMLKEAGRHGLSRREATI
Ga0318546_1108408613300031771SoilVSEIEKASTPDAAARALRDRMHSFKEAARHGLSRREAFP
Ga0318508_101120213300031780SoilALVSEIEKASTPGAAVGALRDRVHSFKAAARHGLSRREALP
Ga0318576_1045568313300031796SoilSALVAEIEKAPSVQDAADALRERVAKLKEAGRQGLSRREATR
Ga0318576_1054951033300031796SoilIGSALVSEIEKASTPGAAVGALRDRVRSFKAAARHGLSRREALP
Ga0310917_1056567613300031833SoilSALVSEIEKASTPGAAVGALRDRVRSFKAAARHGLSRREALP
Ga0318527_1011800213300031859SoilSALVSEIEKASTPGAAVGALRDRVHSFKAAARHGLSRREALP
Ga0306921_1096541733300031912SoilALVSEIEKGATVDTTAAALRDRLLQLKEAGRHGLSRRGAG
Ga0318530_1034959633300031959SoilVVGSALVSEIEKASSPDAAASALRMRIHSLKEAARHGLSRREATP
Ga0307479_1040850843300031962Hardwood Forest SoilLVSEIEKASSVEAASAALRDRVTVLKEAGRKGLSRREATT
Ga0307479_1138479933300031962Hardwood Forest SoilVSEIENAKSVEAATAALAARVRSLKQAATHGLSRREVAP
Ga0307479_1190111923300031962Hardwood Forest SoilEIENAKSVEAASAALAARVRSLKQAATHGLSRREVAP
Ga0310911_1066789833300032035SoilLADAAVIGSALVSEIEKAPTPDGAARALRERLHSFKEAARHGLSRREALP
Ga0307470_1128266913300032174Hardwood Forest SoilDAAVVGSALVSEIENAESVDAACTALAERVRLLKQAATHGLSRREVAP
Ga0307472_10089015813300032205Hardwood Forest SoilIEKAPSIEAASAALSDRVSVLKEAGRHGLSRREAPI
Ga0335079_1018666543300032783SoilAEIEKAASVEAAAAALRERAEKLKGAGRHGLSRREATR
Ga0335078_1272785023300032805SoilVSEIENAATTDAAATALRERTLKLKEAARHGLSRREAIP
Ga0335080_1010400453300032828SoilVGSALVAEVEKAGSVEAAAAVLRDRVEKLKEAGRHGLSRREATP
Ga0310914_1181944723300033289SoilVIGSSLVTEIETASNVEAAAAALRDRIRSLKEAGRKGLSRRKATL
Ga0334817_042124_780_9053300033820SoilALVSEIEKAASPEAAATALRARVRALKEAARRGLSRREATP

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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