NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F041321

Metagenome / Metatranscriptome Family F041321

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F041321
Family Type Metagenome / Metatranscriptome
Number of Sequences 160
Average Sequence Length 42 residues
Representative Sequence RADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN
Number of Associated Samples 125
Number of Associated Scaffolds 160

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.25 %
% of genes near scaffold ends (potentially truncated) 98.75 %
% of genes from short scaffolds (< 2000 bps) 87.50 %
Associated GOLD sequencing projects 116
AlphaFold2 3D model prediction Yes
3D model pTM-score0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (91.250 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(30.625 % of family members)
Environment Ontology (ENVO) Unclassified
(31.250 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(45.625 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 48.57%    β-sheet: 0.00%    Coil/Unstructured: 51.43%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.50
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 160 Family Scaffolds
PF01694Rhomboid 63.75
PF02887PK_C 5.00
PF00561Abhydrolase_1 2.50
PF13336AcetylCoA_hyd_C 1.25
PF01546Peptidase_M20 1.25
PF03572Peptidase_S41 1.25
PF09286Pro-kuma_activ 1.25
PF00015MCPsignal 0.62
PF01182Glucosamine_iso 0.62
PF01584CheW 0.62
PF13231PMT_2 0.62
PF04253TFR_dimer 0.62
PF00291PALP 0.62
PF03929PepSY_TM 0.62
PF02897Peptidase_S9_N 0.62
PF06415iPGM_N 0.62
PF08668HDOD 0.62
PF04191PEMT 0.62
PF16870OxoGdeHyase_C 0.62
PF0563523S_rRNA_IVP 0.62

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 160 Family Scaffolds
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 63.75
COG0469Pyruvate kinaseCarbohydrate transport and metabolism [G] 5.00
COG0793C-terminal processing protease CtpA/Prc, contains a PDZ domainPosttranslational modification, protein turnover, chaperones [O] 1.25
COG0840Methyl-accepting chemotaxis protein (MCP)Signal transduction mechanisms [T] 1.25
COG4934Serine protease, subtilase familyPosttranslational modification, protein turnover, chaperones [O] 1.25
COG03636-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminaseCarbohydrate transport and metabolism [G] 0.62
COG0696Phosphoglycerate mutase (BPG-independent), AlkP superfamilyCarbohydrate transport and metabolism [G] 0.62
COG1505Prolyl endopeptidase PreP, S9A serine peptidase familyAmino acid transport and metabolism [E] 0.62
COG1770Protease IIAmino acid transport and metabolism [E] 0.62
COG3182PepSY-associated TM regionFunction unknown [S] 0.62
COG3295Uncharacterized conserved proteinFunction unknown [S] 0.62


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms91.25 %
UnclassifiedrootN/A8.75 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002916|JGI25389J43894_1097713All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300004092|Ga0062389_101971414All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Gemmata761Open in IMG/M
3300005179|Ga0066684_10623399All Organisms → cellular organisms → Bacteria725Open in IMG/M
3300005330|Ga0070690_101775747All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium502Open in IMG/M
3300005332|Ga0066388_101090283All Organisms → cellular organisms → Bacteria1350Open in IMG/M
3300005439|Ga0070711_101129804All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300005451|Ga0066681_10289853All Organisms → cellular organisms → Bacteria → Acidobacteria1000Open in IMG/M
3300005541|Ga0070733_10606919All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300005591|Ga0070761_10162400All Organisms → cellular organisms → Bacteria → Acidobacteria1312Open in IMG/M
3300005952|Ga0080026_10052479All Organisms → cellular organisms → Bacteria → Acidobacteria1070Open in IMG/M
3300006031|Ga0066651_10783280All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300006176|Ga0070765_100354759All Organisms → cellular organisms → Bacteria → Acidobacteria1363Open in IMG/M
3300006176|Ga0070765_101517680All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium631Open in IMG/M
3300006800|Ga0066660_10598385All Organisms → cellular organisms → Bacteria → Acidobacteria922Open in IMG/M
3300007076|Ga0075435_101039967All Organisms → cellular organisms → Bacteria715Open in IMG/M
3300007265|Ga0099794_10100780All Organisms → cellular organisms → Bacteria → Acidobacteria1441Open in IMG/M
3300007788|Ga0099795_10173511All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300007788|Ga0099795_10306796All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300009038|Ga0099829_11531678All Organisms → cellular organisms → Bacteria550Open in IMG/M
3300009088|Ga0099830_10778772All Organisms → cellular organisms → Bacteria789Open in IMG/M
3300009089|Ga0099828_11534651All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola587Open in IMG/M
3300009090|Ga0099827_10484541All Organisms → cellular organisms → Bacteria1062Open in IMG/M
3300009143|Ga0099792_10003716All Organisms → cellular organisms → Bacteria → Proteobacteria5969Open in IMG/M
3300009143|Ga0099792_10480302All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium775Open in IMG/M
3300009143|Ga0099792_10728405All Organisms → cellular organisms → Bacteria644Open in IMG/M
3300010159|Ga0099796_10137256All Organisms → cellular organisms → Bacteria953Open in IMG/M
3300010358|Ga0126370_12115077All Organisms → cellular organisms → Bacteria → Acidobacteria553Open in IMG/M
3300010358|Ga0126370_12446679Not Available519Open in IMG/M
3300010360|Ga0126372_10859768All Organisms → cellular organisms → Bacteria905Open in IMG/M
3300010361|Ga0126378_11539091Not Available754Open in IMG/M
3300010362|Ga0126377_10582207All Organisms → cellular organisms → Bacteria1162Open in IMG/M
3300010376|Ga0126381_104104187All Organisms → cellular organisms → Bacteria → Acidobacteria566Open in IMG/M
3300010379|Ga0136449_102354040All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300011120|Ga0150983_11355544All Organisms → cellular organisms → Bacteria → Acidobacteria821Open in IMG/M
3300011269|Ga0137392_11281751All Organisms → cellular organisms → Bacteria592Open in IMG/M
3300011271|Ga0137393_10208019All Organisms → cellular organisms → Bacteria → Acidobacteria1653Open in IMG/M
3300012189|Ga0137388_10387447All Organisms → cellular organisms → Bacteria1293Open in IMG/M
3300012189|Ga0137388_10426753All Organisms → cellular organisms → Bacteria → Acidobacteria1228Open in IMG/M
3300012189|Ga0137388_10994350All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300012200|Ga0137382_10891567All Organisms → cellular organisms → Bacteria → Acidobacteria641Open in IMG/M
3300012202|Ga0137363_10530795All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300012202|Ga0137363_10531887All Organisms → cellular organisms → Bacteria → Acidobacteria989Open in IMG/M
3300012203|Ga0137399_10110785All Organisms → cellular organisms → Bacteria2141Open in IMG/M
3300012203|Ga0137399_10153644All Organisms → cellular organisms → Bacteria1840Open in IMG/M
3300012207|Ga0137381_11780110All Organisms → cellular organisms → Bacteria505Open in IMG/M
3300012210|Ga0137378_10169563All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2027Open in IMG/M
3300012211|Ga0137377_11852780All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300012349|Ga0137387_10158841All Organisms → cellular organisms → Bacteria → Acidobacteria1613Open in IMG/M
3300012354|Ga0137366_10462286All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium919Open in IMG/M
3300012356|Ga0137371_10778235All Organisms → cellular organisms → Bacteria730Open in IMG/M
3300012361|Ga0137360_10012991All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5359Open in IMG/M
3300012361|Ga0137360_10372056All Organisms → cellular organisms → Bacteria1200Open in IMG/M
3300012362|Ga0137361_10890464All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300012362|Ga0137361_11137750All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium702Open in IMG/M
3300012923|Ga0137359_11656818All Organisms → cellular organisms → Bacteria527Open in IMG/M
3300012923|Ga0137359_11677371All Organisms → cellular organisms → Bacteria523Open in IMG/M
3300012927|Ga0137416_11150624All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300012971|Ga0126369_10492506All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1282Open in IMG/M
3300012971|Ga0126369_11711729All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300012975|Ga0134110_10083469All Organisms → cellular organisms → Bacteria1280Open in IMG/M
3300015242|Ga0137412_10271976All Organisms → cellular organisms → Bacteria1335Open in IMG/M
3300016270|Ga0182036_10182578All Organisms → cellular organisms → Bacteria1523Open in IMG/M
3300016270|Ga0182036_10254058All Organisms → cellular organisms → Bacteria → Acidobacteria1317Open in IMG/M
3300016341|Ga0182035_10055787All Organisms → cellular organisms → Bacteria2706Open in IMG/M
3300016341|Ga0182035_10360578All Organisms → cellular organisms → Bacteria → Acidobacteria1211Open in IMG/M
3300016404|Ga0182037_10061738All Organisms → cellular organisms → Bacteria2554Open in IMG/M
3300016445|Ga0182038_10143474All Organisms → cellular organisms → Bacteria1811Open in IMG/M
3300017928|Ga0187806_1204888All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300018007|Ga0187805_10131978All Organisms → cellular organisms → Bacteria → Acidobacteria1135Open in IMG/M
3300018062|Ga0187784_11579899Not Available519Open in IMG/M
3300018086|Ga0187769_10121581All Organisms → cellular organisms → Bacteria1892Open in IMG/M
3300019882|Ga0193713_1048509All Organisms → cellular organisms → Bacteria1223Open in IMG/M
3300019888|Ga0193751_1123312All Organisms → cellular organisms → Bacteria963Open in IMG/M
3300020140|Ga0179590_1208917All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300020170|Ga0179594_10027683All Organisms → cellular organisms → Bacteria1781Open in IMG/M
3300020199|Ga0179592_10256732All Organisms → cellular organisms → Bacteria783Open in IMG/M
3300020199|Ga0179592_10265152All Organisms → cellular organisms → Bacteria768Open in IMG/M
3300020199|Ga0179592_10426902All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300020579|Ga0210407_11446464All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium508Open in IMG/M
3300020581|Ga0210399_10129295All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2078Open in IMG/M
3300020583|Ga0210401_10873516Not Available758Open in IMG/M
3300021180|Ga0210396_10073728All Organisms → cellular organisms → Bacteria3103Open in IMG/M
3300021180|Ga0210396_11142319All Organisms → cellular organisms → Bacteria → Acidobacteria654Open in IMG/M
3300021404|Ga0210389_11230992All Organisms → cellular organisms → Bacteria → Acidobacteria575Open in IMG/M
3300021405|Ga0210387_10419494All Organisms → cellular organisms → Bacteria1186Open in IMG/M
3300021405|Ga0210387_11488272Not Available580Open in IMG/M
3300021405|Ga0210387_11803936All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium515Open in IMG/M
3300021406|Ga0210386_10857487All Organisms → cellular organisms → Bacteria → Acidobacteria779Open in IMG/M
3300021474|Ga0210390_10218396All Organisms → cellular organisms → Bacteria1613Open in IMG/M
3300021475|Ga0210392_10949647All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium643Open in IMG/M
3300021477|Ga0210398_10115139All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidisarcina → Acidisarcina polymorpha2184Open in IMG/M
3300021478|Ga0210402_11711940All Organisms → cellular organisms → Bacteria → Acidobacteria555Open in IMG/M
3300021479|Ga0210410_10923862All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium760Open in IMG/M
3300021559|Ga0210409_11635355All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium520Open in IMG/M
3300021560|Ga0126371_11999767All Organisms → cellular organisms → Bacteria → Acidobacteria697Open in IMG/M
3300022532|Ga0242655_10225219All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300022726|Ga0242654_10322476All Organisms → cellular organisms → Bacteria → Acidobacteria574Open in IMG/M
3300024330|Ga0137417_1293590All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300024331|Ga0247668_1008590All Organisms → cellular organisms → Bacteria2145Open in IMG/M
3300024331|Ga0247668_1018199Not Available1453Open in IMG/M
3300025326|Ga0209342_10141783Not Available2184Open in IMG/M
3300025898|Ga0207692_10166387All Organisms → cellular organisms → Bacteria → Acidobacteria1275Open in IMG/M
3300025898|Ga0207692_10826321All Organisms → cellular organisms → Bacteria607Open in IMG/M
3300025900|Ga0207710_10544547All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300025905|Ga0207685_10242692Not Available867Open in IMG/M
3300025905|Ga0207685_10500576All Organisms → cellular organisms → Bacteria639Open in IMG/M
3300025906|Ga0207699_10494321All Organisms → cellular organisms → Bacteria882Open in IMG/M
3300025918|Ga0207662_11110753All Organisms → cellular organisms → Bacteria → Acidobacteria562Open in IMG/M
3300026041|Ga0207639_12274684All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300026304|Ga0209240_1016361All Organisms → cellular organisms → Bacteria → Acidobacteria2829Open in IMG/M
3300026323|Ga0209472_1034705All Organisms → cellular organisms → Bacteria → Acidobacteria2277Open in IMG/M
3300026330|Ga0209473_1112568All Organisms → cellular organisms → Bacteria1132Open in IMG/M
3300026374|Ga0257146_1024490All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium981Open in IMG/M
3300026490|Ga0257153_1093352All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium599Open in IMG/M
3300026542|Ga0209805_1193935All Organisms → cellular organisms → Bacteria → Acidobacteria882Open in IMG/M
3300026550|Ga0209474_10004372All Organisms → cellular organisms → Bacteria → Acidobacteria12225Open in IMG/M
3300026557|Ga0179587_10067307All Organisms → cellular organisms → Bacteria → Acidobacteria2100Open in IMG/M
3300026557|Ga0179587_10616967Not Available714Open in IMG/M
3300026557|Ga0179587_11197168All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300027326|Ga0209731_1056538All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300027610|Ga0209528_1107470All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300027651|Ga0209217_1099753All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300027667|Ga0209009_1170331All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300027727|Ga0209328_10056337All Organisms → cellular organisms → Bacteria1206Open in IMG/M
3300027773|Ga0209810_1330070All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300027835|Ga0209515_10449233All Organisms → cellular organisms → Bacteria678Open in IMG/M
3300027862|Ga0209701_10164668All Organisms → cellular organisms → Bacteria → Acidobacteria1345Open in IMG/M
3300027862|Ga0209701_10232007All Organisms → cellular organisms → Bacteria → Acidobacteria1086Open in IMG/M
3300027862|Ga0209701_10667019All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300027882|Ga0209590_10374368All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium919Open in IMG/M
3300027903|Ga0209488_10355758All Organisms → cellular organisms → Bacteria1088Open in IMG/M
3300028047|Ga0209526_10158793All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1581Open in IMG/M
3300028138|Ga0247684_1042600Not Available729Open in IMG/M
3300028776|Ga0302303_10309448Not Available531Open in IMG/M
3300028906|Ga0308309_10356626All Organisms → cellular organisms → Bacteria1248Open in IMG/M
3300028906|Ga0308309_11110564All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium683Open in IMG/M
3300029636|Ga0222749_10088955All Organisms → cellular organisms → Bacteria1433Open in IMG/M
3300029636|Ga0222749_10093656All Organisms → cellular organisms → Bacteria1401Open in IMG/M
3300030042|Ga0302300_1007669All Organisms → cellular organisms → Bacteria4655Open in IMG/M
3300030053|Ga0302177_10648933Not Available536Open in IMG/M
3300031057|Ga0170834_108912904All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium855Open in IMG/M
3300031128|Ga0170823_10966959All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300031128|Ga0170823_15146966All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium930Open in IMG/M
3300031128|Ga0170823_16194665All Organisms → cellular organisms → Bacteria546Open in IMG/M
3300031525|Ga0302326_10026725All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae11655Open in IMG/M
3300031668|Ga0318542_10029277All Organisms → cellular organisms → Bacteria → Acidobacteria2356Open in IMG/M
3300031681|Ga0318572_10709534All Organisms → cellular organisms → Bacteria → Acidobacteria599Open in IMG/M
3300031681|Ga0318572_10715168All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300031820|Ga0307473_10522457Not Available805Open in IMG/M
3300031823|Ga0307478_11456763All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium567Open in IMG/M
3300031879|Ga0306919_10088661All Organisms → cellular organisms → Bacteria → Acidobacteria2150Open in IMG/M
3300031962|Ga0307479_10292698All Organisms → cellular organisms → Bacteria1609Open in IMG/M
3300031962|Ga0307479_10719556All Organisms → cellular organisms → Bacteria → Acidobacteria976Open in IMG/M
3300032205|Ga0307472_100643944Not Available943Open in IMG/M
3300032205|Ga0307472_101286969All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium703Open in IMG/M
3300032205|Ga0307472_102133340All Organisms → cellular organisms → Bacteria564Open in IMG/M
3300032782|Ga0335082_11338500All Organisms → cellular organisms → Bacteria → Acidobacteria585Open in IMG/M
3300033289|Ga0310914_10040817All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3778Open in IMG/M
3300033290|Ga0318519_10693000All Organisms → cellular organisms → Bacteria → Acidobacteria622Open in IMG/M
3300034178|Ga0364934_0038604All Organisms → cellular organisms → Bacteria1759Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil30.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil18.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil5.62%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.00%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil4.38%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.38%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.38%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil3.12%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.75%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil2.50%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa2.50%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.25%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.25%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.25%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.25%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.25%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.25%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.62%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.62%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.62%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.62%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.62%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.62%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.62%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.62%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.62%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.62%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.62%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.62%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002916Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_20cmEnvironmentalOpen in IMG/M
3300004092Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300005179Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133EnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005541Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1EnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005952Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-045EnvironmentalOpen in IMG/M
3300006031Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300007788Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009143Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012200Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012211Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaGEnvironmentalOpen in IMG/M
3300012349Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012975Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015EnvironmentalOpen in IMG/M
3300015242Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300016270Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017928Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300019882Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020140Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021406Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021475Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022532Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300024331Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK09EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025900Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025905Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026323Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300026374Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-AEnvironmentalOpen in IMG/M
3300026490Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-AEnvironmentalOpen in IMG/M
3300026542Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)EnvironmentalOpen in IMG/M
3300026550Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)EnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027326Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027773Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027835Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW60B uncontaminated upgradient, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027903Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028776Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E2_1EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030042Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E1_1EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031525Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3EnvironmentalOpen in IMG/M
3300031668Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23EnvironmentalOpen in IMG/M
3300031681Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032782Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300034178Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25389J43894_109771313300002916Grasslands SoilVLALPWRADLFAFGPKLMGPLATSNLFGVLMFTLLAASLFYFGRKKLN*
Ga0062389_10197141413300004092Bog Forest SoilDLFAFGPKIMGSLATNNLFGAFMFLLLAGTLFYFARKKLD*
Ga0066684_1062339913300005179SoilWVTTVLRLPWRADLFAFGPKMFGPLATSNLFGLIMFLALAASLFYFARKKLD*
Ga0070690_10177574713300005330Switchgrass RhizosphereASMLRLPWSPDLFAFGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD*
Ga0066388_10109028333300005332Tropical Forest SoilWMVSVLRLPWRADLFSIGPKFWPNLANNNTLAVVMFVLLSASLFHFARKKLD*
Ga0070711_10112980423300005439Corn, Switchgrass And Miscanthus RhizosphereRLPWSPDLFAFGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD*
Ga0066681_1028985313300005451SoilGLPWRADLFAFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLN*
Ga0070733_1060691923300005541Surface SoilGPKILGSLATSNLFGVVMFSMLAASLFYFARKKLD*
Ga0070761_1016240013300005591SoilFAAALRLPWRPELFSFGPKIMGSLATSNLFGAFMFLILAGSLFYFARKKLD*
Ga0080026_1005247923300005952Permafrost SoilFASMLRLPWRADLFAFGPKLFGPLANSNLFGLIMFILLSGSLFYFARKKLD*
Ga0066651_1078328023300006031SoilPKVMGPLATSNLFGVFMFALLAASLFYFARKKLN*
Ga0070765_10035475913300006176SoilFSWSLRLPWRPDLFSFGPKLLGPLATNNFFGLVMFLLLAASLFYFARKKLD*
Ga0070765_10151768023300006176SoilLRLPWNPDTIAFGPRLFGSWATNNAFGLIMFILLAASLFYFARKKLD*
Ga0066660_1059838513300006800SoilWRADLFAFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLN*
Ga0075435_10103996713300007076Populus RhizosphereFGPKMFGPLATSNLFGLIMFLALAASLFYFARKKLD*
Ga0099794_1010078013300007265Vadose Zone SoilSALRLPWRADLFAYGPKLLGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0099795_1017351113300007788Vadose Zone SoilDLFSFGPKLFGPLATSNLFGITMFALLAASLFYFARKKLD*
Ga0099795_1030679623300007788Vadose Zone SoilFGPKLLGSLATSNLFATIMFALLCASLFYFARKKLD*
Ga0099829_1153167823300009038Vadose Zone SoilWLTSVLRLPWRPDLFSFGPKLMGPLATSNLFGVFMFALLAASLFYFARKKLS*
Ga0099830_1077877223300009088Vadose Zone SoilFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL*
Ga0099828_1153465123300009089Vadose Zone SoilDLFAFGPRIFGSLATSNLFGLFMFILLAASLFYFARKKLN*
Ga0099827_1048454113300009090Vadose Zone SoilLRLPWRPDLFSFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLG*
Ga0099792_1000371613300009143Vadose Zone SoilSLRLPWRPDLFAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLD*
Ga0099792_1048030223300009143Vadose Zone SoilTSALGLPWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0099792_1072840523300009143Vadose Zone SoilAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLD*
Ga0099796_1013725613300010159Vadose Zone SoilPDLFAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLD*
Ga0126370_1211507723300010358Tropical Forest SoilPKVFGSLATSNAFGIVMFVVLIISLFYFGRKKLD*
Ga0126370_1244667913300010358Tropical Forest SoilLFSFGPKVFGSLATSNAFGIVMFVVLIASLFYFGRKKLD*
Ga0126372_1085976823300010360Tropical Forest SoilWRADLFAFGPKILGPLATSNLFGLIMFLVLAGSLFYFARKKLD*
Ga0126378_1153909113300010361Tropical Forest SoilLPWRPDLFSFGPKLLGSLATNNLFGLIMFLLLAASLFHFARRKLD*
Ga0126377_1058220713300010362Tropical Forest SoilGPKIMGSLATSNLFGIFMFAVLSASLFYFARKKLN*
Ga0126381_10410418723300010376Tropical Forest SoilLPWRADLFSFGPQIMGPLATSNLFGVFMFVLLAASLFYFARKKL*
Ga0136449_10235404023300010379Peatlands SoilWVTAVFRLPWPADLFSFGPKIMGPLATSNLFGIFMFALLGASLFYFARKKLR*
Ga0150983_1135554423300011120Forest SoilLFSFGPKIMGSLATNNLFGIFMFALLAASLFYFARKKLN*
Ga0137392_1128175123300011269Vadose Zone SoilLQLPWRPDLFAFGPKLMGPLATSSLFGIFMFALLAASLFYFARKKLN*
Ga0137393_1020801923300011271Vadose Zone SoilRADLFAYGPKLLGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0137388_1038744723300012189Vadose Zone SoilFSSLLGLPWRADLFSFGPKIMGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0137388_1042675313300012189Vadose Zone SoilSILRLPWRPDLFSFGPKIFGSLATSNLFGMIMFVLLAASLFYFARKKLN*
Ga0137388_1099435023300012189Vadose Zone SoilSVLRLPWRPDLFSFGPKLMGPLATSNLFGVFMFALLAASLFYFARKKLS*
Ga0137382_1089156723300012200Vadose Zone SoilFGPKVMGPLATSNLFGVFMFALLAASLFYFARKKLN*
Ga0137363_1053079513300012202Vadose Zone SoilRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL*
Ga0137363_1053188713300012202Vadose Zone SoilRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0137399_1011078533300012203Vadose Zone SoilWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0137399_1015364433300012203Vadose Zone SoilWLTATLRLPWRGDLFAYGPKLLGPLATNNLFGIFMFALLAASLFYFARKKLD*
Ga0137381_1178011013300012207Vadose Zone SoilAFGPKILGPLATNNLFGVFMFLMLAASLFHFARKKLD*
Ga0137378_1016956313300012210Vadose Zone SoilPKIFGHLAASNLFGVFMFLMLGASVFYFARKKLD*
Ga0137377_1185278023300012211Vadose Zone SoilADLFAFGPKMFGPLATSNLFGLIMFLALAASLFYFARKKLD*
Ga0137387_1015884133300012349Vadose Zone SoilFAFGPQLMGPLATSNLFGIFMFALLAASLFYFARKKLN*
Ga0137366_1046228613300012354Vadose Zone SoilPWRPDLFSFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLG*
Ga0137371_1077823523300012356Vadose Zone SoilPDLFSFGPKVLGPLGTDSLFGVFMVLMLAASLFYFARKKLD*
Ga0137360_1001299153300012361Vadose Zone SoilGPKLLGPLATSNLFGIFMFALLAASLFYFARKKLD*
Ga0137360_1037205633300012361Vadose Zone SoilWSPDAFAFGPKLFGSWATNNFFGLVMFALLAASLFYFARKKLD*
Ga0137361_1089046413300012362Vadose Zone SoilDLFSFGPKLFGSLATNNLFGIIMFALLAASLFYFARKKLD*
Ga0137361_1113775023300012362Vadose Zone SoilSLLALPWRADLFAFGPKVMGPLATSNLFGVFMFALLAASLFYFARKKLN*
Ga0137359_1165681813300012923Vadose Zone SoilADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL*
Ga0137359_1167737113300012923Vadose Zone SoilGPKIMGPLATSNLFGIFMFALLATSLFYFARKKLN*
Ga0137416_1115062413300012927Vadose Zone SoilAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL*
Ga0126369_1049250633300012971Tropical Forest SoilFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLG*
Ga0126369_1171172923300012971Tropical Forest SoilRADLFSFGPKVFGSLATSNAFGIVMFVVLIASLFYFGRKKLD*
Ga0134110_1008346933300012975Grasslands SoilDLFAFGPKMFGPLATSNLFGLIMFMALAASLFYFARKKLD*
Ga0137412_1027197633300015242Vadose Zone SoilFGPKLMGSLATNNLFGIFMFALLAASLFYFARKKLN*
Ga0182036_1018257813300016270SoilIGPKVLGSLAQNNLFGLIMFLFLGATLFHFARKKLD
Ga0182036_1025405833300016270SoilSAVLRLPWRPDLFTFGPKLMGPLATSNLFGALMFVLLAGSLFFFARKKLA
Ga0182035_1005578713300016341SoilRLPWRADLFSFGPKILGPLATSNLFGLIMFLVLAGSLFYFARKKLD
Ga0182035_1036057813300016341SoilPDLFSFGPKLMGPLAASNLFGALVFVLLAGSLFFFGRKKLD
Ga0182037_1006173833300016404SoilFSFGPKLLGSLATNNLFGLIMFLLLAASLFHFARKKLD
Ga0182038_1014347433300016445SoilAIGPKVLGSLAQNNLFGLIMFLFLGATLFHFARKKLD
Ga0187806_120488813300017928Freshwater SedimentHWLSVVLRLPWRPDLFSFGPKLLGPLASSNLFGVFMFLLLSASLFYFARKKLD
Ga0187805_1013197833300018007Freshwater SedimentFGPKLLGSFATSNLAGLIMFLLLAASLFYFARKKLG
Ga0187784_1157989923300018062Tropical PeatlandGPKTLGEFAASSWAGVLMFVLLATSLFAFARKRLE
Ga0187769_1012158123300018086Tropical PeatlandLRWRADLVAFGPKLMGPLATSNLFGVFMFVLLAGSPFYFARKKLD
Ga0193713_104850923300019882SoilGPKIFGSLATSNLFGVFMFLMLGASVFYFARKKLD
Ga0193751_112331213300019888SoilLFAFGPKIFGSLATSNIFGVFMFLMLGASVFYFARKKLD
Ga0179590_120891723300020140Vadose Zone SoilRLPWRPDLFAFGPKIFGSLATSNLFGVFMFLMLGASVFYFARKKLD
Ga0179594_1002768313300020170Vadose Zone SoilTSALGLPWRADLFAFGPKLMGPLATSSLFGIFMFALLAASLFYFARKKLD
Ga0179592_1025673223300020199Vadose Zone SoilWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL
Ga0179592_1026515223300020199Vadose Zone SoilSDLFAFGPKLMGSLATSNLFGIFMFALLGGSLFYFARKKLD
Ga0179592_1042690223300020199Vadose Zone SoilLPWRPDLFAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLD
Ga0210407_1144646413300020579SoilAIGPKILGGLATNNLFGAFMFVVLAGSLFYFARKKLD
Ga0210399_1012929533300020581SoilFAFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLS
Ga0210401_1087351613300020583SoilAGALHLPWRADLFSFGPKLVGSLANNNLFAVFMFLLLCASLFYFARKKLD
Ga0210396_1007372813300021180SoilVLRLPWRPDLFSFGPKLLGPLATSNLFGAAMFLLLAGSLFYFARKKLD
Ga0210396_1114231923300021180SoilAIGSKILGGLATNNLFGAFMFVVLAGSLFYFARKKLD
Ga0210389_1123099213300021404SoilAFGPKILGPLAVSNLFGVIMFLALAASLFYFARKKLD
Ga0210387_1041949423300021405SoilWVTSVFRLPWPADLFSFGPKIMGPLATSNLFGIFMFALLGAALFYFARKKLD
Ga0210387_1148827223300021405SoilGPKLLGPLATSNLFGAFMFLLLAGSLFHFARKKLD
Ga0210387_1180393613300021405SoilRLPWNPDTIAFGPKLFGSWATNNAFGLIMFIALAASLFYFARKKLD
Ga0210386_1085748713300021406SoilLPWRPDLFSFGPKILGSLATSNLFGLFMFMLLAGSLFYFARKKLS
Ga0210390_1021839633300021474SoilWRPDLFSFGPKFMGSLATSNLFGIFMFALLGASLFYFARKKLN
Ga0210392_1094964713300021475SoilRLPWRPDLFAFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLS
Ga0210398_1011513913300021477SoilILRLPWRPDLFSFGPKVLGSLATNNLFGLIMFLLLATSLFYFARKKLD
Ga0210402_1171194023300021478SoilSFGPKIMGPLAISNLFGIFMFALLAGSLFYFARKKLN
Ga0210410_1092386213300021479SoilLFAFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLS
Ga0210409_1163535513300021559SoilWRPDLFSFGPKLLGPLATNNLFGSVMFLLLAASLFYFARKKLD
Ga0126371_1199976723300021560Tropical Forest SoilTFGPKLMGPLATSNLFGALMFVLLAGSLFFFARKKLA
Ga0242655_1022521923300022532SoilPYGSSIYAFGTRLSTSNLFGIFMFALLAGSLFYFARKKLD
Ga0242654_1032247613300022726SoilFSFGPKIMGPLATSNLFGIFMFALLGASLFYFARKKLS
Ga0137417_129359023300024330Vadose Zone SoilPWRADLFAFGPKVMGPLATSNLFGVFMFTLLAASLFYFARKKLN
Ga0247668_100859013300024331SoilFSFGPKLFGPLATNNLFGIFMFALLGGSLFYFARKKLDS
Ga0247668_101819923300024331SoilVLRLPWRPDLFSFGPKLMGPLATSNLFGIFMFALLGGSLFYFARKKLD
Ga0209342_1014178343300025326SoilGPKIFGALTTSNLFAVGMFLLLAGAQYYFARKKLD
Ga0207692_1016638713300025898Corn, Switchgrass And Miscanthus RhizosphereLFSFGPKLLGSLATNNLFGLIMFLLLAGSLFHFARKKLD
Ga0207692_1082632133300025898Corn, Switchgrass And Miscanthus RhizosphereALGPKLLGSLATSNIFGMVMFLLLAASLFYFARKKLG
Ga0207710_1054454723300025900Switchgrass RhizosphereFGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD
Ga0207685_1024269213300025905Corn, Switchgrass And Miscanthus RhizosphereFGSKLLGSLATNNLFGLIMFLLLAGSLFHFARKKLD
Ga0207685_1050057623300025905Corn, Switchgrass And Miscanthus RhizosphereSFGPKLFGPLATSNLFGIIMFALLATSLFYFARKKLD
Ga0207699_1049432123300025906Corn, Switchgrass And Miscanthus RhizosphereLPWSPDLFAFGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD
Ga0207662_1111075313300025918Switchgrass RhizosphereMLRLPWSPDLFAFGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD
Ga0207639_1227468423300026041Corn RhizosphereGPKLFGSWATNNFFGLSMFILLAASLFYFARKKLD
Ga0209240_101636133300026304Grasslands SoilPWRADFFAFGPKIMGPLATSNLFGIFMFALLAASLFYFARKKLN
Ga0209472_103470533300026323SoilLPWRADLFAFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLN
Ga0209473_111256823300026330SoilTAVLGLPWRADLLAFGPKVLGPLATSNLLGLIMFLALAGSLFYFARKKLD
Ga0257146_102449023300026374SoilLLRLPWRADLFAFGPKFMGHLATSNLFGIFMFALLGASLFYFARKKLD
Ga0257153_109335213300026490SoilPDLFAFGPKLLGSLATSNMFGLVMFLLLAASLFYFARKKLS
Ga0209805_119393513300026542SoilFSFGPKLMGPLATSNLFGVFMFALLAGSLFYFARKKLD
Ga0209474_1000437213300026550SoilADLFAFGPKMFGPLATSNLFGLIMFLALAASLFYFARKKLD
Ga0179587_1006730733300026557Vadose Zone SoilWRADLFAFGPKLMGPLATSNLFGIFMFALLAGSLFYFARKKLN
Ga0179587_1061696723300026557Vadose Zone SoilFSFGPKLFGSLATNNLFGITMFALLAASLFYFARKKLD
Ga0179587_1119716823300026557Vadose Zone SoilLPWRADLFAFGPQLMGSLATNNLFGIFMFALLAASLFYFARKKLN
Ga0209731_105653823300027326Forest SoilRADLFAFGPKFMGPFATSNLFGVFMFALLAASLFYFARKKLD
Ga0209528_110747023300027610Forest SoilHWFSWSLQLPWRPDLFSFGPKLLGPLATSNPFGLLMFVLLATSLFYFARKKLT
Ga0209217_109975323300027651Forest SoilDLFAFGPKLLGPFATSNLAGIIMFALLAASLFYFARKKLD
Ga0209009_117033113300027667Forest SoilGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLD
Ga0209328_1005633713300027727Forest SoilFSFGPKLLGPLATSNPFGLLMFVLLATSLFYFARKKLT
Ga0209810_133007023300027773Surface SoilAFGPRILGTSLTQGNLLGVVMFLLLAGSLFYFARKKLN
Ga0209515_1044923313300027835GroundwaterLPLPKDLFEFNPEMLHSLPKNNLFGIIMFAVLAASLFYFARKKLN
Ga0209701_1016466813300027862Vadose Zone SoilALPWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN
Ga0209701_1023200713300027862Vadose Zone SoilADLFAYGPKLLGPLATSNLFGIFMFALLAASLFYFARKKLN
Ga0209701_1066701913300027862Vadose Zone SoilAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKL
Ga0209590_1037436813300027882Vadose Zone SoilRLPWRPDLFSFGPKLMGPLATSNLFGTFMFALLAASLFYFARKKLG
Ga0209488_1035575823300027903Vadose Zone SoilFGPKIMGPLATSNLFGIFMFALLAASLFYFARKKLD
Ga0209526_1015879313300028047Forest SoilPDLFAFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLS
Ga0247684_104260013300028138SoilRPDLFSFGPKLFGNLATNNLFGIFMFALLGGSLFYFARKKLDS
Ga0302303_1030944813300028776PalsaGPKILGSLATSNLFGLFMFILLAASLFYFARKKLNKT
Ga0308309_1035662623300028906SoilFGPKLLGSLATNNFVGLVMFLLLAASLFYFARKQLD
Ga0308309_1111056413300028906SoilLPWNPDTIAFGPKLFGSWATNNAFGLIMFLLLAASLFYFARKKLD
Ga0222749_1008895533300029636SoilGLPWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN
Ga0222749_1009365633300029636SoilSSVLRLPWRPDLFSFGPKILGSLATSNLFGLFMFMLLAGSLFYFARKKLS
Ga0302300_100766913300030042PalsaAFGPKILGSLATSNLFGLFMFILLAASLFYFARKKLNKT
Ga0302177_1064893323300030053PalsaKILGSLATSNLFGLFMFILLAASLFYFARKKLNKT
Ga0170834_10891290423300031057Forest SoilPWRPDLFAFGPKVLGSLATSNLFGLVMFLLLAASLFYFARKKLS
Ga0170823_1096695913300031128Forest SoilWRPDLFAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLD
Ga0170823_1514696613300031128Forest SoilDTIAFGPKLFGSWATNNAFGLIMFLLLAASLFYFARKKLD
Ga0170823_1619466523300031128Forest SoilPWRPDLFAFGPKIFGHLATSNLFGVFMFLMLGASVFYFARKKLA
Ga0302326_1002672513300031525PalsaWFAAILHLPWRADLFAFGPKILGPLATSNLFGLIIFLALAGSLFYFARKKLD
Ga0318542_1002927713300031668SoilGLPWRADLFAFGPKVLGPLSTSNLLGLIMFLILAGSLFYFARKKLD
Ga0318572_1070953413300031681SoilRPDLFSFGPKLMGPLAASNLFGALVFVLLAGSLFFFGRKKLD
Ga0318572_1071516813300031681SoilFAALVRLPWRADLFSFGPKIMGPLAVSNVFGAFMFLVLAGSLFFFARKKLD
Ga0307473_1052245713300031820Hardwood Forest SoilFAFGPKILGSLATSNLFGLFMFILLAASLFHFARKKLN
Ga0307478_1145676313300031823Hardwood Forest SoilFRLPWRPDLFAFGPKLLGSLATSNLFGLVMFLLLAVSLFYFARKKLS
Ga0306919_1008866133300031879SoilLSAVLRLPWRPDLFTFGPKLMGPLATSNLFGALMFVLLAGSLFFFARKKLA
Ga0307479_1029269813300031962Hardwood Forest SoilADLFAFGPKLLGPLATSNLFGVFMFVLLSASLFYFARKKLD
Ga0307479_1071955623300031962Hardwood Forest SoilALGLPWRADLFAFGPKLMGPLATSNLFGIFMFALLAASLFYFARKKLN
Ga0307472_10064394413300032205Hardwood Forest SoilLRVPWRADLFSFGPKLMGSLATNNLFGIFMFAVLAGSLFYFARKKLD
Ga0307472_10128696913300032205Hardwood Forest SoilFAFGPKVMGPLATSNLFGVFMFALLAASLFYFARKKLN
Ga0307472_10213334033300032205Hardwood Forest SoilRRLPWSPDLFAFGPKLFGSWATNNAFGLCMFILLATSLFYFARKKLD
Ga0335082_1133850013300032782SoilGPKILGPLASSNLFGTFMFVLLAGSLFHFARKKLD
Ga0310914_1004081713300033289SoilFGPKLLGSLATSNLFGLVMFLLLAASLFYFARKKLG
Ga0318519_1069300013300033290SoilRPDLFTFGPKLMGPLATSNLFGALMFVLLAGSLFFFARKKLA
Ga0364934_0038604_1_1143300034178SedimentFGPKLLGQTLANSNLFGLIMFLILAASLFVFARKKLD


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