Metagenome Family F041238

Overview

Basic Information

• Family ID: F041238
• Family Type: Metagenome
• Number of Sequences: 160
• Average Sequence Length: 38 residues
• Representative Sequence: MENLLQMWLNPINLGILFLCLTVGIWILAHSDPTRKDK
• Number of Associated Samples: 108
• Number of Associated Scaffolds: 160

Quality Assessment

• Transcriptomic Evidence: No
• Most common taxonomic group: Bacteria
• % of genes with valid RBS motifs: 84.38 %
• % of genes near scaffold ends (potentially truncated): 11.88 %
• % of genes from short scaffolds (< 2000 bps): 75.00 %
• Associated GOLD sequencing projects: 100
• AlphaFold2 3D model prediction: Yes
• 3D model pTM-score: 0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Most Common Taxonomy

• Group: Bacteria (93.750 % of family members)
• NCBI Taxonomy ID: 2
• Taxonomy: All Organisms → cellular organisms → Bacteria

Most Common Ecosystem

• GOLD Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (12.500 % of family members)
• Environment Ontology (ENVO): Unclassified (23.750 % of family members)
• Earth Microbiome Project Ontology (EMPO): Host-associated → Plant → Plant rhizosphere (28.125 % of family members)

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure

• Classification: Transmembrane (alpha-helical)
• Signal Peptide: No
• Secondary Structure distribution:
  α-helix: 45.45%
  β-sheet: 0.00%
  Coil/Unstructured: 54.55%

Predicted 3D Structure

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 160 Family Scaffolds
PF07690	MFS_1	37.50
PF05368	NmrA	7.50
PF08241	Methyltransf_11	4.38
PF01494	FAD_binding_3	3.75
PF13649	Methyltransf_25	3.75
PF12697	Abhydrolase_6	3.12
PF01565	FAD_binding_4	0.62
PF06155	GBBH-like_N	0.62
PF01061	ABC2_membrane	0.62
PF13460	NAD_binding_10	0.62

Neighboring Clusters of Orthologous Genes (COGs)

COG ID	Name	Functional Category	% Frequency in 160 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	7.50
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	3.75
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	3.75
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	3.75
COG0277	FAD/FMN-containing lactate dehydrogenase/glycolate oxidase	Energy production and conversion [C]	0.62
COG0730	Sulfite exporter TauE/SafE/YfcA and related permeases, UPF0721 family	Inorganic ion transport and metabolism [P]	0.62
COG1943	REP element-mobilizing transposase RayT	Mobilome: prophages, transposons [X]	0.62
COG3371	Uncharacterized membrane protein	Function unknown [S]	0.62
COG3536	Uncharacterized conserved protein, DUF971 family	Function unknown [S]	0.62

Phylogeny

NCBI Taxonomy

Level 1

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	93.75 %
Unclassified	root	N/A	6.25 %

Level 2

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	93.75 %
Unclassified	root	N/A	6.25 %

Level 3

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	93.75 %
Unclassified	root	N/A	6.25 %

Level 4

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	59.38 %
Unclassified	root	N/A	6.25 %

Level 5

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.25 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	48.12 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	5.00 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Unclassified	root	N/A	6.25 %

Level 6

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %
Anaerolineae	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae	0.62 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	3.12 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.25 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	1.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Thermoflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia	1.25 %
Unclassified	root	N/A	6.25 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	8.12 %

Level 7

Name	Rank	Taxonomy	Distribution
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.62 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	3.12 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.12 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.62 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1.25 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	1.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Thermoflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales	1.25 %
Unclassified	root	N/A	6.25 %

Level 8

Name	Rank	Taxonomy	Distribution
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.12 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	1.25 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.62 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.62 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	1.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Thermoflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae	1.25 %
Unclassified	root	N/A	6.25 %

Level 9

Name	Rank	Taxonomy	Distribution
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.12 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	1.25 %
Cohnella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella	0.62 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.62 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.62 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Thermoflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus	1.25 %
Unclassified	root	N/A	6.25 %

Level 10

Name	Rank	Taxonomy	Distribution
Anaerolineales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Anaerolineae → Anaerolineales	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	8.12 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	1.25 %
Cohnella kolymensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → Cohnella kolymensis	0.62 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.62 %
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	0.62 %
Paenibacillus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Paenibacillus	0.62 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.75 %
Thermoflexus hugenholtzii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermoflexia → Thermoflexales → Thermoflexaceae → Thermoflexus → Thermoflexus hugenholtzii	1.25 %
Unclassified	root	N/A	6.25 %

Associated Scaffolds

Scaffold	Taxonomy	Length
2162886006|SwRhRL3b_contig_4438135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	858
3300000956|JGI10216J12902_103154102	All Organisms → cellular organisms → Bacteria → Proteobacteria	1314
3300000956|JGI10216J12902_105474955	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	825
3300001213|JGIcombinedJ13530_101865385	All Organisms → cellular organisms → Bacteria	808
3300001213|JGIcombinedJ13530_103289715	All Organisms → cellular organisms → Bacteria	723
3300001213|JGIcombinedJ13530_103820419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	896
3300001213|JGIcombinedJ13530_107549887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	578
3300001213|JGIcombinedJ13530_107918529	All Organisms → cellular organisms → Bacteria → Terrabacteria group	578
3300001213|JGIcombinedJ13530_108661748	All Organisms → cellular organisms → Bacteria	646
3300001213|JGIcombinedJ13530_109283091	All Organisms → cellular organisms → Bacteria	719

Environmental Properties

Associated Habitat Types

Ecosystem

Habitat	Taxonomy	Distribution
Environmental	Environmental	78.75%
Host-Associated	Host-Associated	21.25%

Class

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	37.50%
Plants	Host-Associated → Plants	21.25%
Terrestrial	Environmental → Terrestrial	41.25%

Category

Habitat	Taxonomy	Distribution
Cave	Environmental → Terrestrial → Cave	0.62%
Freshwater	Environmental → Aquatic → Freshwater	19.38%
Marine	Environmental → Aquatic → Marine	10.00%
Peat	Environmental → Terrestrial → Peat	13.12%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.88%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.37%
Sediment	Environmental → Aquatic → Sediment	6.88%
Soil	Environmental → Terrestrial → Soil	27.50%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.25%

Type

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.62%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.62%
Lake	Environmental → Aquatic → Freshwater → Lake	0.62%
Loam	Environmental → Terrestrial → Soil → Loam	2.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	12.50%
Sediment	Environmental → Aquatic → Thermal Springs → Sediment	1.25%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.25%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.37%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	13.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.12%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.25%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.62%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.62%
Wetlands	Environmental → Aquatic → Marine → Wetlands	9.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	6.25%

Subtype

Habitat	Taxonomy	Distribution
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.62%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.25%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.25%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	0.62%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	6.25%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.62%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	13.12%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.12%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	12.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.88%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	6.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.62%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	3.12%
Unclassified	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified	1.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.25%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.62%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.25%

Habitat

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.25%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.25%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.88%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	11.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	9.38%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.62%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	4.38%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	1.88%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	3.12%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.12%
Hot Spring Sediment	Environmental → Aquatic → Thermal Springs → Sediment → Unclassified → Hot Spring Sediment	1.25%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	3.12%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.25%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.25%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	12.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.25%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	3.12%
Salt Marsh Sediment	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment	0.62%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.62%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	3.12%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.25%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.88%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.25%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.38%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.25%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	6.25%

Associated Samples

Taxon OID	Sample Name	Habitat Type
2162886006	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental
3300005205	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2	Environmental
3300005213	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D2	Environmental
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated
3300005618	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2	Host-Associated
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
SwRhRL3b_0236.00001920	2162886006	Switchgrass Rhizosphere	MENVLQLWLNPINLGILFLCITVGIWILAHSDPTRRDK
JGI10216J12902_1031541022	3300000956	Soil	MNSLIQLWLNPVNLGILFLCLTIGIWVLSKAGPWNWDK*
JGI10216J12902_1054749551	3300000956	Soil	MQNLIQLWLNPINLGILFLCFTIGIWILAHSDPTRRDK*
JGIcombinedJ13530_1018653851	3300001213	Wetland	KIIEMWLNPINLGILFLCLAGGIWILAHSDPTHRDK*
JGIcombinedJ13530_1032897152	3300001213	Wetland	ENLLQTWLNPINLGILFLCLCGGIWLLSHTDPNSKHK*
JGIcombinedJ13530_1038204191	3300001213	Wetland	MDKIIVMWLNPINLGILFLCLAGGVWILAHSDPNRRDK*
JGIcombinedJ13530_1075498871	3300001213	Wetland	KLKFERKTNMEKIIAMWLNPINLGILFLCITGGIWILAHSDPTRRDK*
JGIcombinedJ13530_1079185292	3300001213	Wetland	KILEMWLNPINLGIVFLCLCGGIWLLSHTAPHNWKDK*
JGIcombinedJ13530_1086617482	3300001213	Wetland	MNSILQLWLNPINLGILFLCLCAGVWILAHSAPNYKDK*
JGIcombinedJ13530_1092830911	3300001213	Wetland	TNMEKIIEMWLNPINLGILFLCLTGGIWILAHSDPTRRDK*
Ga0068999_100659981	3300005205	Natural And Restored Wetlands	MEKIIEMWLNPINLGILFLCITGGIWILAHSDPTRREKY*
Ga0068998_100244622	3300005213	Natural And Restored Wetlands	MNMEKIIEMWLNPINLGILFLCLTGGIWILAHSDPTRRDK*
Ga0068859_1009023522	3300005617	Switchgrass Rhizosphere	MENLIQLWLNPVNLGIFFLCSTVGIWILAHSDPTRRDK*
Ga0068859_1017953591	3300005617	Switchgrass Rhizosphere	MENVLQLWLNPLNLGILFLCITVGIWILAHSDPTRRDK*
Ga0068864_1012000232	3300005618	Switchgrass Rhizosphere	MEKIIEMWLNPINLGILFLCITGGIWILAHSDPTRRDK*
Ga0074470_1098568551	3300005836	Sediment (Intertidal)	MENILQQWLNPINLGILFVCLCAGIWLLAHTAPNYKDK*
Ga0068858_1002740712	3300005842	Switchgrass Rhizosphere	MENLLQLWLNPIDLGIFFLCITLGIWILAHSDASHRNK*
Ga0068860_1014856992	3300005843	Switchgrass Rhizosphere	MENVLQLWLSPLNLGILFLCITVGIWILAHSDPTRRDK*
Ga0075278_10123162	3300005893	Rice Paddy Soil	MENTIQLWLNPINLGILFLCLCGGLWLLSHTAPNDKNK*
Ga0075272_10890852	3300005900	Rice Paddy Soil	MKMENLIQLWLNPINLGILFLCVTTGIWILAHSAPDHKDK*
Ga0075279_100542601	3300005903	Rice Paddy Soil	MKMENLIQLWLNPINLGILFLCVTTGIWILAHSAPDHKGK*
Ga0081539_100059368	3300005985	Tabebuia Heterophylla Rhizosphere	METLIQSWLNPINLGVFFLCLTVGIWILSKSAPTHRDK*
Ga0081539_100498243	3300005985	Tabebuia Heterophylla Rhizosphere	MENLLQLWLNPINLGILFLCMTVGIWLLAHTDPTRKDK*
Ga0075021_103250472	3300006354	Watersheds	MENLLQIWLNPINLGILFLCLCGGIWFLAHTAPNYRDK*
Ga0079222_126047212	3300006755	Agricultural Soil	MENLIQVWLNPINLGILFLCFSIGVWILAHSDPTRRDK*
Ga0075428_1009286022	3300006844	Populus Rhizosphere	MENLIQVWLNPINLGILFLCFTIGIWILAHSDPTRRDK*
Ga0075421_1003032182	3300006845	Populus Rhizosphere	MENLLQMWLNPINLGIFFLCFTVGIWILAHSAPNDKGK*
Ga0075421_1004704422	3300006845	Populus Rhizosphere	METLIQLWLDPINLGIFFLCLTVGIWILSKSGPTYRDK*
Ga0075421_1024845912	3300006845	Populus Rhizosphere	MKMEKIIEMWLNPVNLGVVFLCFTVGIWILAHSAPNQKDK*
Ga0075430_1009362342	3300006846	Populus Rhizosphere	MENLIQVWLNPINLGILFLCLTIGIWILAHSDPTRRDQ*
Ga0075433_100700153	3300006852	Populus Rhizosphere	MENVLQLWLNPINLGILFLCITVGIWILAHSDPTRRDK*
Ga0075433_109140882	3300006852	Populus Rhizosphere	MENLIQLWLNPVNLGIFFLCFTVGIWILAHSDPTRRDK*
Ga0075420_1012558982	3300006853	Populus Rhizosphere	MEKIVEMWLNPVNLGILFLCLTLGIWILSKSGPWNWDK*
Ga0073934_100141024	3300006865	Hot Spring Sediment	MENLIQVWLNPINLGILFLCLTLGIWILSKSGPWNWDK*
Ga0075429_1000485932	3300006880	Populus Rhizosphere	MENLLQMWLNPINLGIFFLCFTVGIWTLAHSAPNDKGK*
Ga0075429_1006912332	3300006880	Populus Rhizosphere	MENLIQVWLNPINLGILFLCLTIGIWILAHSDPTRRDK*
Ga0075429_1008402192	3300006880	Populus Rhizosphere	MQNLIQLWLDPINLGLFFLCITVGVWILAHSDPTRRDK*
Ga0075429_1010290272	3300006880	Populus Rhizosphere	MENLIQMWLNPINLGILFLCVAIGVWILAHSDPTRK
Ga0075429_1011393762	3300006880	Populus Rhizosphere	MEKIIEMWLNPINLGILFLCITVGVWILAHSDPTRKDK*
Ga0079218_111837392	3300007004	Agricultural Soil	MENLIQLWLNPINLGLFFLCITVGVWILAHSDPTRRDK*
Ga0105106_104455532	3300009078	Freshwater Sediment	MENVLQLWLNPINLGILFLCLTIGIWILAHSDPTRKDK*
Ga0105098_100008799	3300009081	Freshwater Sediment	MENVLQMWLNPINLGILFLCITAGIWLLAHSDPTRRDK*
Ga0105098_101956792	3300009081	Freshwater Sediment	MENLIQVWLNPVNLGILFLCLTIGIWILSKSGPWNWK*
Ga0102851_101033524	3300009091	Freshwater Wetlands	LGMWLNPINLGVLFLCLSAGIWLLAHTAPTDKGK*
Ga0075418_122499072	3300009100	Populus Rhizosphere	MENLIQMWLNPINLGILFLCVAIGVWILAHSDPTRKDK*
Ga0075418_131682812	3300009100	Populus Rhizosphere	MENALQLWLNPINLGILFLCITVGIWILAQSDPTRRDK*
Ga0105091_100274193	3300009146	Freshwater Sediment	METILQTWLNPINLGILFLCLCAGIWLLAHTAPNQRDK*
Ga0114129_125272902	3300009147	Populus Rhizosphere	MQNLIQLWLNPINLGILFLCVTVGIWILAHSDPTRKNR*
Ga0105092_100337102	3300009157	Freshwater Sediment	MENVLQLWLNPINLGILFVCLTIGIWILSKSGPWNWK*
Ga0075423_130133602	3300009162	Populus Rhizosphere	MENVLQLWLNPLNLGILFLCITAGIWILAHSDPTRRDK*
Ga0113563_106965022	3300009167	Freshwater Wetlands	MNNILQLWLNPINLGILFLCFCIGIWLLAHTAPNDRGK*
Ga0113563_123228371	3300009167	Freshwater Wetlands	KLKFERKTNMEKIIEMWLNPINLGILFLCITGGIWILAHSDPTRRDK*
Ga0105104_100021681	3300009168	Freshwater Sediment	LLQMWLNPINLGVLFLCVTIGIWILAHSDPTRRDK*
Ga0105104_100027227	3300009168	Freshwater Sediment	MENVLQMWLNPLNLGILFLCVTIGIWILAHSDPTRRDK*
Ga0105104_102407912	3300009168	Freshwater Sediment	MENLIQIWLNPINLGILFLCVTVGIWILAHSDPTRRDK*
Ga0105104_107946372	3300009168	Freshwater Sediment	METLLQMWLNPINLGIFFLCITVGIWILAHSDSTRRDK*
Ga0126315_100316983	3300010038	Serpentine Soil	MENLIQLWLNPINLGILFLCITIGIWVLSKSGPNS*
Ga0126315_103439801	3300010038	Serpentine Soil	MENLIQIWLNPINLGILFLCITVGIWILAHSDPTRRDK*
Ga0126308_113612361	3300010040	Serpentine Soil	MENVLQMWLNPINLGILFLCLTVGIWILAHSDPTRRDK*
Ga0126312_106078341	3300010041	Serpentine Soil	MENLIQMWLNPINLGILFLCVTVGIWILAHSDPTRPDK*
Ga0126310_117393471	3300010044	Serpentine Soil	NLIQMWLNPINLGILFLCITVGIWILAHSDPTRRDK*
Ga0126377_100184066	3300010362	Tropical Forest Soil	METLIQSWLDPINMGVFFLCLTVGIWILSKSGPTYRDK*
Ga0136847_103721652	3300010391	Freshwater Sediment	MDNLLQLWLNPINLGILFLCICTGIWILAHSAPNYKDK*
Ga0137437_11017972	3300011442	Soil	MEKIIEMWLNPINLGILFLCITVGVWILAHSDPTRRDK*
Ga0137374_100244682	3300012204	Vadose Zone Soil	MEKLLQLWLNPINLGILFLCITIGIWILAHSDPTRKDK*
Ga0137374_100319212	3300012204	Vadose Zone Soil	MENLIQIWLNPINLGFFFLCITVGIWILAHSDPTRRDK*
Ga0137374_101057294	3300012204	Vadose Zone Soil	MDNLLQLWLNPINLGILFLCITVGIWILAHSDPTRRDK*
Ga0137367_100088088	3300012353	Vadose Zone Soil	MQNLVQMWLNPINLGILFLCITVGVWVLAHSDPTRRDK*
Ga0137367_100124005	3300012353	Vadose Zone Soil	MENLIQLWLNPINLGILFLCLTVGIWILAHSDPTRRNK*
Ga0137366_103984732	3300012354	Vadose Zone Soil	MQNLIQLWLNPLNLGILFLCLAIGVWILAHSDPNRRDK*
Ga0137369_100343513	3300012355	Vadose Zone Soil	MENVLQLWLNPINLGILFLCITVGIWILAHSDPNRRDR*
Ga0137337_10365632	3300012675	Soil	MENLIQLWLNPINLGILFLCLCAGIWILAHSDPTRK
Ga0157299_101137392	3300012899	Soil	MENLIQVWLNPINLGILFLCFSIGIWILAHSDPTRKDK*
Ga0153915_101225304	3300012931	Freshwater Wetlands	MQTILGIWLNPINLGVLFLCLSAGIWLLAHTAPTDKGK*
Ga0153915_106532452	3300012931	Freshwater Wetlands	MQTILGTWLNPINLGVLFLCISAGIWLLAHTAPTNKGK*
Ga0153915_109788532	3300012931	Freshwater Wetlands	MEKILEMWLNPVDLGILVLCITAGIWILANSAPNNGKNK*
Ga0153916_102199163	3300012964	Freshwater Wetlands	MQTALSMWLNPINLGVLFLCLSAGIWLLAHTAPTDKGK*
Ga0153916_105255933	3300012964	Freshwater Wetlands	MQTILGIWLNPINLGVLFLCLSAGIWLLAHTASTDKGK*
Ga0153916_106979402	3300012964	Freshwater Wetlands	MATILGMWLNPVNLGVLFLCITAGIWILAHSALTIRDK*
Ga0153916_133244741	3300012964	Freshwater Wetlands	MQNLILIWLNPINLGILFLCLCAGIWILSHSAPNYKDK*
Ga0120188_10178622	3300013760	Terrestrial	MENLIQLWLNPINLGILFLCLTLGIWILSKSGPWNWDK*
Ga0075322_10137173	3300014311	Natural And Restored Wetlands	MENVLQLCLNPLNLGILFLCITAGIWILAHSDPTRRDK*
Ga0075355_12547121	3300014322	Natural And Restored Wetlands	MEKIIAMWLNPINLGILFLCITGGIWILAHSDPNRRDK*
Ga0157380_116035182	3300014326	Switchgrass Rhizosphere	MENLIQVWLNPINLGILFLCFSIGIWILAHSDPTRRDK*
Ga0180085_10824823	3300015259	Soil	MENLIQLWLNPLNLGILFLCVTVGIWILSKSGPNTMDK*
Ga0132258_103908853	3300015371	Arabidopsis Rhizosphere	MENILQLWLNPLNLGILFLCITVGIWILAHSDPTRRDK*
Ga0132258_124623562	3300015371	Arabidopsis Rhizosphere	MENLLQLWLNPIDLGILFLCITVGIWILAHSDPDRGNK*
Ga0184626_102893062	3300018053	Groundwater Sediment	MENLLQMWLNPINLGILFLCITIGIWILAHSAPTDKGN
Ga0184623_100520892	3300018056	Groundwater Sediment	MEKTIEMWLNPINLGILFLCLTVGIWILSKSGPNYRDK
Ga0184615_100422261	3300018059	Groundwater Sediment	EIQKGETKMENLIQMWLNPINLGILFLCLTVGIWILAHSAPDQKDK
Ga0184615_103005622	3300018059	Groundwater Sediment	MENLIQLWLNPINLGILFLCITVGIWILAHSDPGRGNK
Ga0184640_103416062	3300018074	Groundwater Sediment	MDHLLQLWLNPINLGVLFLCLCTGLWILSRCAPNYKDK
Ga0210377_1000401710	3300021090	Groundwater Sediment	MENLIQMWLNPINLGILFLCLTVGIWILAHSAPNQKGK
Ga0210377_100437394	3300021090	Groundwater Sediment	MENLIQLWLNPINLGILFLCVTTGIWILTHSAPDNKGK
Ga0210377_102350632	3300021090	Groundwater Sediment	MENLIQMWLNPINLGILFLCITIGIWILAHSDPTRKDK
Ga0210377_103978942	3300021090	Groundwater Sediment	MENLIQMWLNPINLGILFLCLTVGIWILAHSAPDQKDK
Ga0210377_104158482	3300021090	Groundwater Sediment	MEIQKGEIEMEKILVMWLSPINLGILFLCITIGIWILAHSDPTRKDK
Ga0209172_100525684	3300025310	Hot Spring Sediment	MENLIQVWLNPINLGILFLCLTLGIWILSKSGPWNWDK
Ga0210120_10286532	3300025556	Natural And Restored Wetlands	MQNILEMWLNPINLGILFLCISSGIWILAHSAPDYKDK
Ga0210138_10131482	3300025580	Natural And Restored Wetlands	MESLIQVWLNPINLGILFLCITAGIWILAHSDPTRRDK
Ga0210114_10825352	3300025795	Natural And Restored Wetlands	MENLLQQWLNPINLGILFLCVTIGIWILAHSDPTRKDK
Ga0207684_116097932	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MENVLQLWLNPLNLGILFLCITVGIWILAHSDPTRRDK
Ga0207646_101161362	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MENILQLWLNPINLGILFLCITVGIWILAHSDPTRRDK
Ga0207670_102958102	3300025936	Switchgrass Rhizosphere	MENILQLWLNPLNLGILFLCITVGIWILAHSDPTRRDK
Ga0208527_10120902	3300025990	Rice Paddy Soil	MENLIQLWLNPIDLGILFLCICTGIWILAHSAPTYKDK
Ga0207999_10160951	3300026010	Rice Paddy Soil	MENLIQLWLNPINLGILFLCLCTGVWILAHSAPNDKSK
Ga0207708_101185413	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MENVLQLWLNPVNLGILFLCITVGIWILAHSDPTRRDK
Ga0207676_103733252	3300026095	Switchgrass Rhizosphere	MEKIIEMWLNPINLGILFLCITGGIWILAHSDPTRRDK
Ga0207674_106967351	3300026116	Corn Rhizosphere	LKFERKTNMEKIIEMWLNPINLGILFLCITGGIWILAHSDPTRRDK
Ga0209593_100045486	3300027743	Freshwater Sediment	MENLLQMWLNPINLGVLFLCVTIGIWILAHSDPTRRDK
Ga0209593_100594562	3300027743	Freshwater Sediment	METILQTWLNPINLGILFLCLCAGIWLLAHTAPNQRDK
Ga0209593_100885362	3300027743	Freshwater Sediment	MENLIQVWLNPVNLGILFLCLTIGIWILSKSGPWNWK
Ga0209593_101893152	3300027743	Freshwater Sediment	MENVLQMWLNPLNLGILFLCVTIGIWILAHSDPTRRDK
Ga0209481_104187692	3300027880	Populus Rhizosphere	MENLLQMWLNPINLGIFFLCFTVGIWTLAHSAPNDKGK
Ga0208980_102594332	3300027887	Wetland	NMEKIIVMWLNPINLGILFLCITGGIWILAHSDPTRRDK
Ga0208980_103030372	3300027887	Wetland	MEKIIEMWLNPINLGILFLCVTGGIWILAHSDPARRDK
Ga0208980_103579372	3300027887	Wetland	MEKIIEMWLNPINLGILFLCLAGGIWILAHSDPTHRDK
Ga0209068_102660102	3300027894	Watersheds	MENLLQIWLNPINLGILFLCLCGGIWFLAHTAPNYRDK
Ga0209382_103857662	3300027909	Populus Rhizosphere	MEKIIEMWLNPVNLGVVFLCFTVGIWILAHSAPNQKDK
Ga0209382_112105202	3300027909	Populus Rhizosphere	METLIQLWLDPINLGIFFLCLTVGIWILSKSGPTYRDK
Ga0209820_10008972	3300027956	Freshwater Sediment	MENVLQMWLNPINLGILFLCITAGIWLLAHSDPTRRDK
Ga0209705_105767142	3300027979	Freshwater Sediment	MENVLQLWLNPINLGILFLCLTIGIWILAHSDPTRKDK
Ga0302162_100632322	3300028649	Fen	MQNLTELWLNPINLGILFLCFCAGVWILAHCAPNYKDK
Ga0265336_102232792	3300028666	Rhizosphere	MENMIQLWLNPINLGILFVCLCAGLWLLSHTAPNDK
Ga0302293_101511252	3300029981	Fen	MENLLQTWLNPINLGILFLCFCGGIWLLAHTAPNTKDK
Ga0311365_117382271	3300029989	Fen	MESILQLWLNPINLGILFLCFCGGIWLLAHTAPNYKDK
Ga0311336_117064771	3300029990	Fen	LIALWLNPINVGILFLCFCGGIWLLAHTAPNYKDK
Ga0311350_106510322	3300030002	Fen	MENLLQTWLNPIDLGILFLCFCGGIWLLAHTAPNPKDK
Ga0311350_111117331	3300030002	Fen	MENVLQLWLNPVNLGILFLCLCAGIWILAHSAPNYKDK
Ga0311348_114835061	3300030019	Fen	METTLQLWLNPVNLGFLFVCLCAGIWILAHSAPNYKDK
Ga0302286_103675542	3300030047	Fen	MENLLQTWLNPINLGILFLCFCGGIWLLAHTAPNSKDK
Ga0302286_106554671	3300030047	Fen	MENIIQFWLNPINLGILFLCLCGGIWLLAHTAPNPKDK
Ga0311333_101585022	3300030114	Fen	METTLQLWLNPINLGILFLCLCAGIWILAHSAPNYKDK
Ga0311366_102183472	3300030943	Fen	MENLLQTWLNPINLGILFLCFCGGIWLLAHTAPNPKDK
Ga0311366_112207111	3300030943	Fen	MDRAKGENNMENLIALWLNPINVGILFLCFCGGIWLLAHTAPNYKDK
Ga0302323_1000994683	3300031232	Fen	METSLQLWLNPVNLGILFLCLCAGIWILAHSAPNYKDK
Ga0265331_102857331	3300031250	Rhizosphere	MENILQLWLNPIDLGILFLCLCGGLWLLSHTAPNPKDK
Ga0315556_10773673	3300031256	Salt Marsh Sediment	MNTILQMWLNPINLGLFFLCICTGIWILAHSAPNYKDK
Ga0311364_118646262	3300031521	Fen	QGENLMENLLQTWLNPINLGILFLCFCGGIWLLAHTAPNSKDK
Ga0311364_119789462	3300031521	Fen	MQNLIQLWLNPINLGILFLCLCAGIWMLAHTAPNPKDK
Ga0247727_1000558423	3300031576	Biofilm	MDHLLQLWLNPINLGILFLCLCTGIWILAHSAPNYKDK
Ga0302321_1000033056	3300031726	Fen	MENLIALWLNPINVGILFLCFCGGIWLLAHTAPNYKDK
Ga0302321_1000722432	3300031726	Fen	MESILQLWLNPINLGILFLCFCGGIWLLAHTAPNHKDK
Ga0302321_1010631322	3300031726	Fen	MENILQLWLNPINLGILFLCFCGGIWLLAHTAPNHKDK
Ga0302321_1034240602	3300031726	Fen	METTLQLWLNPINLGILFVCLCAGIWILAHSAPNYKDK
Ga0214473_1000585711	3300031949	Soil	MENLLQMWLNPINLGILFLCLTVGIWILAHSDPTRKDK
Ga0214473_105165712	3300031949	Soil	MENLLQMWLNPINLGILILCLTIGIWILSKSGPWNWDK
Ga0310906_104913921	3300032013	Soil	IIEMWLNPINLGILFLCITGGIWILAHSDPTRRDK
Ga0335079_1000574414	3300032783	Soil	METLLSLWLDPIHLGIFFLCLCTGIWILSHSAPSYRDK
Ga0335070_113941662	3300032829	Soil	NILLLWLNPLDLGIFFLCLCAGVWVLAHSAPASKDR
Ga0335069_100213083	3300032893	Soil	MQNILLLWLNPLDLGIFFLCLCAGVWVLAHSAPASKDR
Ga0335071_108075132	3300032897	Soil	MANILQLWLNPIDLGILFLCVCAGIWILAHSAPNYKDK
Ga0335076_110364532	3300032955	Soil	MDNLIQLWLNPIDLGIFFICIAIGVWILAHSAPNYKDK
Ga0326726_101628263	3300033433	Peat Soil	MENLIQIWLNPINLGILFLCLCGGLWLLSHTAPNTKDK
Ga0326726_101742222	3300033433	Peat Soil	MENLIQMWLNPVSLGIMFLCICAGVWILSHSAPNYKGK
Ga0316620_102725401	3300033480	Soil	MQTILGIWLNPINLGVLFLCLSAGIWLLAHTAPTDKGK
Ga0316627_1010556412	3300033482	Soil	MEKYLEMWLNPINLGILFLCITIGIWILAHSDPTRRDK
Ga0316624_122640132	3300033486	Soil	MENLLATWLHPINLGILWLCITAGIWILAHSAPNWRDKE
Ga0316631_101917633	3300033493	Soil	MEKILAQWLNPVNLGILFLCLTGGIWVLAHTAPKNEDE
Ga0316628_1000123617	3300033513	Soil	MQTILGTWLNPINLGVLFLCISAGIWLLAHTAPTNKGK