Metagenome / Metatranscriptome Family F040899

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	46 residues
Representative Sequence	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFE
Number of Associated Samples	132
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.96 %
% of genes near scaffold ends (potentially truncated)	99.38 %
% of genes from short scaffolds (< 2000 bps)	97.52 %
Associated GOLD sequencing projects	126
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (57.764 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.770 % of family members)
Environment Ontology (ENVO)	Unclassified (25.466 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.826 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 40.43% β-sheet: 0.00% Coil/Unstructured: 59.57%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF09912	DUF2141	11.80
PF06776	IalB	3.11
PF00589	Phage_integrase	2.48
PF04392	ABC_sub_bind	1.86
PF01068	DNA_ligase_A_M	1.86
PF08281	Sigma70_r4_2	1.24
PF00082	Peptidase_S8	1.24
PF03401	TctC	0.62
PF01548	DEDD_Tnp_IS110	0.62
PF13505	OMP_b-brl	0.62
PF00501	AMP-binding	0.62
PF03091	CutA1	0.62
PF01734	Patatin	0.62
PF00355	Rieske	0.62
PF04542	Sigma70_r2	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG5342	Invasion protein IalB, involved in pathogenesis	General function prediction only [R]	3.11
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	1.86
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	1.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.86
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.62
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.62
COG1324	Divalent cation tolerance protein CutA	Inorganic ion transport and metabolism [P]	0.62
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.62
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.62
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.62
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.62
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.62
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.62
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
All Organisms	root	All Organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
cellular organisms	root	All Organisms → cellular organisms	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.40 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	34.78 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	14.29 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3.11 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2.48 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.24 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.24 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.62 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.62 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.62 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.24 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1.24 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.62 %
Gemmatimonadaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae	0.62 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.24 %
unclassified Gemmatimonadaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae	0.62 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.62 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	0.62 %
Azospirillum lipoferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	0.62 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.76 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	14.29 %
Bradyrhizobium sp. CCGB12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	0.62 %
Bradyrhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	0.62 %
Gemmatimonadaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	0.62 %
Reyranella soli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	0.62 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	0.62 %
Azospirillum lipoferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	0.62 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02H3V5W	Not Available	538	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1073942	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp.	600	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10103986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	598	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1056002	Not Available	558	Open in IMG/M
3300000858\|JGI10213J12805_10004709	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1180	Open in IMG/M
3300000955\|JGI1027J12803_104281004	Not Available	529	Open in IMG/M
3300000956\|JGI10216J12902_102264991	Not Available	905	Open in IMG/M
3300001661\|JGI12053J15887_10545916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	552	Open in IMG/M
3300004463\|Ga0063356_104670056	Not Available	589	Open in IMG/M
3300004479\|Ga0062595_102340711	Not Available	528	Open in IMG/M
3300004633\|Ga0066395_10382581	Not Available	789	Open in IMG/M
3300004633\|Ga0066395_10694445	Not Available	603	Open in IMG/M
3300005165\|Ga0066869_10115810	Not Available	551	Open in IMG/M
3300005172\|Ga0066683_10300217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	998	Open in IMG/M
3300005330\|Ga0070690_101205164	Not Available	604	Open in IMG/M
3300005332\|Ga0066388_106177504	Not Available	605	Open in IMG/M
3300005332\|Ga0066388_107576331	Not Available	544	Open in IMG/M
3300005332\|Ga0066388_108697023	Not Available	504	Open in IMG/M
3300005340\|Ga0070689_100275343	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1394	Open in IMG/M
3300005363\|Ga0008090_15566003	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	1368	Open in IMG/M
3300005363\|Ga0008090_15819407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	571	Open in IMG/M
3300005436\|Ga0070713_101036596	Not Available	792	Open in IMG/M
3300005471\|Ga0070698_100339596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → Reyranella soli	1433	Open in IMG/M
3300005536\|Ga0070697_101020611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	735	Open in IMG/M
3300005548\|Ga0070665_100285819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1651	Open in IMG/M
3300005555\|Ga0066692_11010609	Not Available	509	Open in IMG/M
3300005616\|Ga0068852_100245368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1714	Open in IMG/M
3300005713\|Ga0066905_101160992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	688	Open in IMG/M
3300005713\|Ga0066905_101372971	Not Available	638	Open in IMG/M
3300005713\|Ga0066905_101463914	Not Available	620	Open in IMG/M
3300005713\|Ga0066905_101603443	Not Available	595	Open in IMG/M
3300005713\|Ga0066905_101816070	Not Available	562	Open in IMG/M
3300005713\|Ga0066905_102117500	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300005713\|Ga0066905_102152077	Not Available	519	Open in IMG/M
3300005764\|Ga0066903_102038059	Not Available	1103	Open in IMG/M
3300005764\|Ga0066903_105949175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	639	Open in IMG/M
3300005764\|Ga0066903_106139172	Not Available	628	Open in IMG/M
3300005840\|Ga0068870_10064861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1973	Open in IMG/M
3300005842\|Ga0068858_101626677	Not Available	637	Open in IMG/M
3300006038\|Ga0075365_11317121	Not Available	507	Open in IMG/M
3300006163\|Ga0070715_10098309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1360	Open in IMG/M
3300006178\|Ga0075367_10558960	Not Available	727	Open in IMG/M
3300006237\|Ga0097621_101052312	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	763	Open in IMG/M
3300006606\|Ga0074062_12636655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	540	Open in IMG/M
3300006846\|Ga0075430_101501132	Not Available	554	Open in IMG/M
3300006852\|Ga0075433_10858587	Not Available	792	Open in IMG/M
3300006904\|Ga0075424_101790240	Not Available	650	Open in IMG/M
3300009156\|Ga0111538_11127556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
3300009792\|Ga0126374_10827866	Not Available	710	Open in IMG/M
3300010041\|Ga0126312_11437507	Not Available	511	Open in IMG/M
3300010043\|Ga0126380_10839809	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300010046\|Ga0126384_12471673	Not Available	504	Open in IMG/M
3300010047\|Ga0126382_10841655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	787	Open in IMG/M
3300010359\|Ga0126376_10553703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1077	Open in IMG/M
3300010361\|Ga0126378_10785072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1062	Open in IMG/M
3300010361\|Ga0126378_10994456	Not Available	943	Open in IMG/M
3300010361\|Ga0126378_13176602	Not Available	523	Open in IMG/M
3300010366\|Ga0126379_11364978	Not Available	815	Open in IMG/M
3300010366\|Ga0126379_11617258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	753	Open in IMG/M
3300010373\|Ga0134128_10355530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1637	Open in IMG/M
3300010375\|Ga0105239_10609484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1246	Open in IMG/M
3300010376\|Ga0126381_101329979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1039	Open in IMG/M
3300010398\|Ga0126383_10412695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1390	Open in IMG/M
3300010398\|Ga0126383_12209675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300010398\|Ga0126383_12697214	Not Available	580	Open in IMG/M
3300010399\|Ga0134127_10672337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1072	Open in IMG/M
3300012202\|Ga0137363_10441482	Not Available	1088	Open in IMG/M
3300012205\|Ga0137362_10689097	Not Available	878	Open in IMG/M
3300012355\|Ga0137369_10918775	Not Available	587	Open in IMG/M
3300012359\|Ga0137385_11565999	Not Available	523	Open in IMG/M
3300012360\|Ga0137375_11184270	Not Available	586	Open in IMG/M
3300012361\|Ga0137360_10451389	Not Available	1089	Open in IMG/M
3300012930\|Ga0137407_12254674	Not Available	520	Open in IMG/M
3300012948\|Ga0126375_11260465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	619	Open in IMG/M
3300012951\|Ga0164300_10400360	Not Available	754	Open in IMG/M
3300012971\|Ga0126369_11218549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	842	Open in IMG/M
3300012998\|Ga0157362_1216539	All Organisms → cellular organisms → Bacteria → Proteobacteria	591	Open in IMG/M
3300014325\|Ga0163163_13078456	Not Available	520	Open in IMG/M
3300014968\|Ga0157379_11376475	Not Available	683	Open in IMG/M
3300014969\|Ga0157376_12461785	Not Available	560	Open in IMG/M
3300014969\|Ga0157376_13099941	Not Available	503	Open in IMG/M
3300015373\|Ga0132257_100391323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1688	Open in IMG/M
3300015373\|Ga0132257_100684151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1274	Open in IMG/M
3300015373\|Ga0132257_101209646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	957	Open in IMG/M
3300016294\|Ga0182041_10618247	Not Available	953	Open in IMG/M
3300016341\|Ga0182035_10543155	Not Available	998	Open in IMG/M
3300016341\|Ga0182035_11269828	Not Available	659	Open in IMG/M
3300016341\|Ga0182035_11631992	Not Available	582	Open in IMG/M
3300016371\|Ga0182034_10815480	Not Available	799	Open in IMG/M
3300016371\|Ga0182034_10870175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300016404\|Ga0182037_10779320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	823	Open in IMG/M
3300016445\|Ga0182038_11851760	Not Available	545	Open in IMG/M
3300018027\|Ga0184605_10104974	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1250	Open in IMG/M
3300018468\|Ga0066662_12434033	Not Available	551	Open in IMG/M
3300018469\|Ga0190270_10462277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1197	Open in IMG/M
3300018481\|Ga0190271_11910706	Not Available	704	Open in IMG/M
3300020005\|Ga0193697_1123268	Not Available	601	Open in IMG/M
3300021479\|Ga0210410_11178817	Not Available	657	Open in IMG/M
3300022756\|Ga0222622_10842053	Not Available	671	Open in IMG/M
3300025899\|Ga0207642_11001607	Not Available	538	Open in IMG/M
3300025903\|Ga0207680_10435412	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → unclassified Gemmatimonadaceae → Gemmatimonadaceae bacterium	930	Open in IMG/M
3300025910\|Ga0207684_10432639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1130	Open in IMG/M
3300025916\|Ga0207663_10228594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1358	Open in IMG/M
3300025929\|Ga0207664_10330948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1345	Open in IMG/M
3300025931\|Ga0207644_11851421	Not Available	505	Open in IMG/M
3300025941\|Ga0207711_11372607	Not Available	649	Open in IMG/M
3300026095\|Ga0207676_10932243	Not Available	853	Open in IMG/M
3300026116\|Ga0207674_10440627	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1259	Open in IMG/M
3300026319\|Ga0209647_1071419	Not Available	1757	Open in IMG/M
3300026327\|Ga0209266_1068455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1661	Open in IMG/M
3300026327\|Ga0209266_1239048	Not Available	595	Open in IMG/M
3300027866\|Ga0209813_10117655	Not Available	922	Open in IMG/M
3300027874\|Ga0209465_10595770	Not Available	548	Open in IMG/M
3300028381\|Ga0268264_11916868	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300028714\|Ga0307309_10220780	Not Available	506	Open in IMG/M
3300028814\|Ga0307302_10628015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCGB12	534	Open in IMG/M
3300028828\|Ga0307312_10601665	Not Available	727	Open in IMG/M
3300028876\|Ga0307286_10409658	Not Available	509	Open in IMG/M
3300028880\|Ga0307300_10306996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	538	Open in IMG/M
3300030902\|Ga0308202_1067010	Not Available	689	Open in IMG/M
3300030903\|Ga0308206_1050099	Not Available	826	Open in IMG/M
3300031091\|Ga0308201_10061061	Not Available	980	Open in IMG/M
3300031092\|Ga0308204_10164922	Not Available	668	Open in IMG/M
3300031226\|Ga0307497_10223249	Not Available	828	Open in IMG/M
3300031546\|Ga0318538_10355313	Not Available	791	Open in IMG/M
3300031561\|Ga0318528_10072518	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1774	Open in IMG/M
3300031564\|Ga0318573_10254362	Not Available	936	Open in IMG/M
3300031573\|Ga0310915_10106594	All Organisms → cellular organisms → Bacteria	1899	Open in IMG/M
3300031573\|Ga0310915_10628040	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300031682\|Ga0318560_10264820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	924	Open in IMG/M
3300031719\|Ga0306917_10105509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2029	Open in IMG/M
3300031736\|Ga0318501_10511162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300031744\|Ga0306918_10337365	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300031771\|Ga0318546_10219920	Not Available	1301	Open in IMG/M
3300031777\|Ga0318543_10394190	Not Available	620	Open in IMG/M
3300031796\|Ga0318576_10176287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1002	Open in IMG/M
3300031819\|Ga0318568_10978177	Not Available	523	Open in IMG/M
3300031833\|Ga0310917_10091458	All Organisms → cellular organisms → Bacteria	1944	Open in IMG/M
3300031854\|Ga0310904_11000804	Not Available	595	Open in IMG/M
3300031879\|Ga0306919_11012079	Not Available	635	Open in IMG/M
3300031890\|Ga0306925_11584504	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031910\|Ga0306923_10753502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1079	Open in IMG/M
3300031954\|Ga0306926_12046895	Not Available	642	Open in IMG/M
3300032000\|Ga0310903_10589281	Not Available	591	Open in IMG/M
3300032009\|Ga0318563_10635849	Not Available	575	Open in IMG/M
3300032013\|Ga0310906_10376275	Not Available	931	Open in IMG/M
3300032035\|Ga0310911_10048015	All Organisms → cellular organisms → Bacteria	2211	Open in IMG/M
3300032035\|Ga0310911_10886987	Not Available	514	Open in IMG/M
3300032051\|Ga0318532_10072393	Not Available	1200	Open in IMG/M
3300032060\|Ga0318505_10288868	Not Available	773	Open in IMG/M
3300032060\|Ga0318505_10467325	Not Available	596	Open in IMG/M
3300032065\|Ga0318513_10238872	Not Available	879	Open in IMG/M
3300032066\|Ga0318514_10151816	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300032066\|Ga0318514_10506947	Not Available	642	Open in IMG/M
3300032090\|Ga0318518_10017106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3132	Open in IMG/M
3300032094\|Ga0318540_10114864	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300032205\|Ga0307472_102003962	Not Available	580	Open in IMG/M
3300032261\|Ga0306920_100143914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3549	Open in IMG/M
3300033289\|Ga0310914_10597338	All Organisms → cellular organisms → Bacteria	995	Open in IMG/M
3300033289\|Ga0310914_11147961	Not Available	678	Open in IMG/M
3300033290\|Ga0318519_10241994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1041	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	81.99%
Host-Associated	Host-Associated	18.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.75%
Plants	Host-Associated → Plants	17.39%
Aquatic	Environmental → Aquatic	1.24%
Fungi	Host-Associated → Fungi	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	80.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	6.83%
Roots	Host-Associated → Plants → Roots	3.11%
Sediment	Environmental → Aquatic → Sediment	1.24%
Mycelium	Host-Associated → Fungi → Mycelium	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.60%
Loam	Environmental → Terrestrial → Soil → Loam	16.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	5.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.97%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.86%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.24%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.57%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.56%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	5.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.97%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.86%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.24%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.24%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.62%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.77%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.32%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.35%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.73%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.86%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.24%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.24%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.24%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.24%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.62%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.62%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Fungus Garden	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Fungus Garden	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005840	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006606	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012998	Fungus gardens microbial communities from leaf cutter ant in Ribeir?o Preto, State of S?o Paulo, Brazil - Atta laevigata ALBM3	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028714	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_196	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300030902	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_356 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030903	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_369 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_08693380	2170459010	Grass Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFE
AF_2010_repII_A100DRAFT_10739421	3300000655	Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRER
AF_2010_repII_A001DRAFT_101039861	3300000793	Forest Soil	MLAGVRPIAAALAMVSVSFAAVAQTVPPGAQLVPPSDQPGRERERFGR
AP72_2010_repI_A100DRAFT_10560022	3300000837	Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPP
JGI10213J12805_100047093	3300000858	Soil	MLAGVRAIAAALALVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPV
JGI1027J12803_1042810041	3300000955	Soil	MLAGVRAIAPALAMASVSFAAVAQVVPPGAQIVPPSDQPGRERERF
JGI10216J12902_1022649912	3300000956	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGGP
JGI12053J15887_105459162	3300001661	Forest Soil	MLAGVRAIAAALAIVSVSFVAAFAQIVPPSDLPGRERFRFETPSPPLAQPGGPII
Ga0063356_1046700561	3300004463	Arabidopsis Thaliana Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGIPPGAQIVPPSDQPGRERERFERPPVP
Ga0062595_1023407111	3300004479	Soil	MLAGVRAIAPALAMASVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPP
Ga0066395_103825811	3300004633	Tropical Forest Soil	MLAGVRVIAAALAMVSISFAAVAQAIPPGAQIVPPSDQPGRERERFERPAV
Ga0066395_106944451	3300004633	Tropical Forest Soil	MPAGVRTIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLAQ
Ga0066869_101158103	3300005165	Soil	MFAGVRAIATAVAMVSVSFAAVAQGVPPGAQIVPPSDQPG
Ga0066683_103002172	3300005172	Soil	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERP
Ga0070690_1012051641	3300005330	Switchgrass Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERE
Ga0066388_1061775042	3300005332	Tropical Forest Soil	MLASARAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPP
Ga0066388_1075763311	3300005332	Tropical Forest Soil	MPAGVRTIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGR
Ga0066388_1086970231	3300005332	Tropical Forest Soil	MFAGVRAVALAMAMASISFAAVAQIVPPSDQPGRERQRFEVPAVP
Ga0070689_1002753431	3300005340	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQ
Ga0008090_155660033	3300005363	Tropical Rainforest Soil	MLAGARAIAAAMAMVCVSFAAVAQVVPSGAQLVPPSDQPGRERERFE
Ga0008090_158194071	3300005363	Tropical Rainforest Soil	MLAGVRPIAAALAMVSVSFAAVAQTVPPGAQLVPPSDQPG
Ga0070713_1010365964	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFE
Ga0070698_1003395964	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MLAGVRAIAPALAMASVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLAQPGGP
Ga0070697_1010206111	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVP
Ga0070665_1002858195	3300005548	Switchgrass Rhizosphere	MFAGVRAIATALAMGSVSFAAVAQGVPPGAQIVPPSDQPGRERERFE
Ga0066692_110106091	3300005555	Soil	MVACVRAVAAALAMVSGSFAAVAQVVPPGAQIVPPSDQPGRERERFERP
Ga0068852_1002453681	3300005616	Corn Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPG
Ga0066905_1011609921	3300005713	Tropical Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRER
Ga0066905_1013729711	3300005713	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPV
Ga0066905_1014639141	3300005713	Tropical Forest Soil	MLAGVRVIAAAFAMVSISFAAVAQAIPPGAQIVPPSDQPGRERERFERPAVP
Ga0066905_1016034431	3300005713	Tropical Forest Soil	MLACVRAVAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFE
Ga0066905_1018160701	3300005713	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPP
Ga0066905_1021175001	3300005713	Tropical Forest Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRE
Ga0066905_1021520772	3300005713	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERF
Ga0066903_1020380591	3300005764	Tropical Forest Soil	MFAGVRAIAAAMAMVSVSCAAVAQIVPPSDLPGRERYRFEQPLRPLAQPGGPIITQPGVEAPPGA
Ga0066903_1059491752	3300005764	Tropical Forest Soil	MLAGARAIAAAMAMVSVSFAAVAQVVPSGAQLVPPSDQPGRERERFEPPAVPLAQ
Ga0066903_1061391721	3300005764	Tropical Forest Soil	MPAGVRTIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERF
Ga0068870_100648615	3300005840	Miscanthus Rhizosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGGPA
Ga0068858_1016266771	3300005842	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERF
Ga0075365_113171211	3300006038	Populus Endosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERER
Ga0070715_100983091	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MVACVRSVAAALAMVSVSFAAVAQVVPPGAQVVPPSDQPGRERERFERPPV
Ga0075367_105589601	3300006178	Populus Endosphere	MFASVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERF
Ga0097621_1010523123	3300006237	Miscanthus Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLA
Ga0074062_126366551	3300006606	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGG
Ga0075430_1015011321	3300006846	Populus Rhizosphere	MLAGVRVIAAALAMVSVSFAAVAQAIPPGAQIVPPSDQPGRER
Ga0075433_108585871	3300006852	Populus Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPPVPL
Ga0075424_1017902402	3300006904	Populus Rhizosphere	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFER
Ga0111538_111275563	3300009156	Populus Rhizosphere	MLAGVRVIAAALAMVSVSFAAVAQAIPPGAQIVPPSD
Ga0126374_108278662	3300009792	Tropical Forest Soil	MLACVRAIAAASAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERP
Ga0126312_114375071	3300010041	Serpentine Soil	MLAGTRAIAAALAMVCVSFAAVAQTVPSGAQLVPPSDQPGRE
Ga0126380_108398091	3300010043	Tropical Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPG
Ga0126384_124716731	3300010046	Tropical Forest Soil	MPAGVRAIAAALAMVSLSFAAVAQVVPPGAQIVPPSGQP
Ga0126382_108416552	3300010047	Tropical Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERP
Ga0126376_105537033	3300010359	Tropical Forest Soil	MLAGVRVIAAALAMVSVSFAAVAQAIPPGAQIVPPSDQPGRERERFE
Ga0126378_107850721	3300010361	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGVQIVPPSDQPGRERERFERPP
Ga0126378_109944561	3300010361	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPS
Ga0126378_131766022	3300010361	Tropical Forest Soil	MLVGVRAVAAALGMVSVSFAAVAQVVPPGAQIVPPSEQPGRER
Ga0126379_113649781	3300010366	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERER
Ga0126379_116172582	3300010366	Tropical Forest Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFE
Ga0134128_103555305	3300010373	Terrestrial Soil	MFAGVRAIATALAMGSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGG
Ga0105239_106094841	3300010375	Corn Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFERPAV
Ga0126381_1013299791	3300010376	Tropical Forest Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPL
Ga0126383_104126953	3300010398	Tropical Forest Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERP
Ga0126383_122096751	3300010398	Tropical Forest Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSD
Ga0126383_126972141	3300010398	Tropical Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERE
Ga0134127_106723371	3300010399	Terrestrial Soil	MVACVRSVAAALAMVSVSFAAVAQGVPPGAQIVPPSDQP
Ga0137363_104414823	3300012202	Vadose Zone Soil	MPAGVRAIAAALAMVSVSFAAAAQVVPPGAQIVPPSAQPGRERERFERPPVPLAQ
Ga0137362_106890972	3300012205	Vadose Zone Soil	MVACVRAVAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLA
Ga0137369_109187751	3300012355	Vadose Zone Soil	MLAGARAIAAALAMVCVSFAAVAQTVPSGAQLVPPSDQPGRERERFARPPV
Ga0137385_115659991	3300012359	Vadose Zone Soil	MLAGVRAIAAALAMVSVSFAAVAQVIPPGAQIVPPSDQPGRERERFERPA
Ga0137375_111842701	3300012360	Vadose Zone Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFE
Ga0137360_104513894	3300012361	Vadose Zone Soil	MVACVHAVAAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERF
Ga0137407_122546741	3300012930	Vadose Zone Soil	MVACVRAVAAALAMVSGSFAAVAQVVPPGAQIVPPSDQPGRE
Ga0126375_112604651	3300012948	Tropical Forest Soil	MLAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPV
Ga0164300_104003603	3300012951	Soil	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRER
Ga0126369_112185492	3300012971	Tropical Forest Soil	MLACVRAIAAASAMVSISFAAVAQVVPPGAQIVPPSDQ
Ga0157362_12165391	3300012998	Fungus Garden	MFAGVRAVAMAMALASFSFAAAAQIVPPSDQPGRERQRFEVPVVPLAQP
Ga0163163_130784561	3300014325	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCADVAQGVPPGAQIVPPSDQPGRERERFERPAVPLA
Ga0157379_113764751	3300014968	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFER
Ga0157376_124617851	3300014969	Miscanthus Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERF*
Ga0157376_130999411	3300014969	Miscanthus Rhizosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPAAQIVPPSDQPGRERERFERPAVP
Ga0132257_1003913231	3300015373	Arabidopsis Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPAAQIVPPSDQPGRERERFERPAVPLAQPGGPAIAV
Ga0132257_1006841513	3300015373	Arabidopsis Rhizosphere	MLAGAGAIGAAVAMVCVSFAAVAQVVPSGAQLVPPSDQPGRE
Ga0132257_1012096463	3300015373	Arabidopsis Rhizosphere	MLAGARAIAAVAMVCVSFAAVAQGVPSGAQLVPPSDQPGRERERFEPPAV
Ga0182041_106182471	3300016294	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQP
Ga0182035_105431551	3300016341	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLAQP
Ga0182035_112698281	3300016341	Soil	MLACVRAVAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERF
Ga0182035_116319921	3300016341	Soil	MLVGVRTVAAALAMISVSFAAGAQVVPPGAQIVPPSDQPGRERERFERP
Ga0182034_108154802	3300016371	Soil	MLVGIRTVAAALGMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERF
Ga0182034_108701751	3300016371	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGR
Ga0182037_107793201	3300016404	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQP
Ga0182038_118517601	3300016445	Soil	MLVGIRTVAAALGMVSVSFAAVAQVVPPGAQIVPPSAQPGRERER
Ga0184605_101049741	3300018027	Groundwater Sediment	MFAGVRAIAAALAMVSVSFAAVAQGVPPAAQIVPPSDQPGRERERFERPPVPLAQP
Ga0066662_124340331	3300018468	Grasslands Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPG
Ga0190270_104622771	3300018469	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPL
Ga0190271_119107062	3300018481	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERF
Ga0193697_11232681	3300020005	Soil	MFAGVRAIAAALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPPVPLAQP
Ga0210410_111788171	3300021479	Soil	MVACVRAVAAALAMVSVPFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLA
Ga0222622_108420533	3300022756	Groundwater Sediment	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPG
Ga0207642_110016071	3300025899	Miscanthus Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGGP
Ga0207680_104354121	3300025903	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGREREQ
Ga0207684_104326391	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPS
Ga0207663_102285943	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MVACVRSVAAALAMVSVSFAAVAQVVPPGAQVVPP
Ga0207664_103309482	3300025929	Agricultural Soil	MVACVRSVAAALAMVSVSFAAVAQVVPPGAQVVPPSDQPG
Ga0207644_118514211	3300025931	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFER
Ga0207711_113726072	3300025941	Switchgrass Rhizosphere	MFAGVRAIATALAMVSVSCAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPL
Ga0207676_109322431	3300026095	Switchgrass Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPPVPLAQ
Ga0207674_104406271	3300026116	Corn Rhizosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPG
Ga0209647_10714195	3300026319	Grasslands Soil	MVACVRAVAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPG
Ga0209266_10684553	3300026327	Soil	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPV
Ga0209266_12390481	3300026327	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPV
Ga0209813_101176551	3300027866	Populus Endosphere	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQ
Ga0209465_105957701	3300027874	Tropical Forest Soil	MPAGVRAIAAALAMVSVSFAAAAQVVPPGAQIVPPSA
Ga0268264_119168682	3300028381	Switchgrass Rhizosphere	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGR
Ga0307309_102207801	3300028714	Soil	MVACVRAVAAALAMVSVSFAAVAQGVPPGAQIVPP
Ga0307302_106280152	3300028814	Soil	MFAGVRAIAVAAAMVSASCAAVAQVVPPSDQPGRERERFETPAVPL
Ga0307312_106016653	3300028828	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPAAQIVPPSDQPGRERERFERPAVPLAQPGGPT
Ga0307286_104096581	3300028876	Soil	MVACVRAVAAALAMVSVPFAAVAQVVPPGAQIVPPSD
Ga0307300_103069961	3300028880	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPP
Ga0308202_10670102	3300030902	Soil	MFAGVRAIAMALAMVSVSFAAVAQGVPPGAQIVPPS
Ga0308206_10500993	3300030903	Soil	MFAGVRAIAMALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPGG
Ga0308201_100610611	3300031091	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERE
Ga0308204_101649221	3300031092	Soil	MFAGVRAIAAALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFERPAVPLAQPG
Ga0307497_102232491	3300031226	Soil	MVACVRAVAAALAMVSVSFAAVAQGVPPGAQIVPPSDQPGRERERFER
Ga0318538_103553131	3300031546	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSA
Ga0318528_100725183	3300031561	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERE
Ga0318573_102543621	3300031564	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQ
Ga0310915_101065941	3300031573	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPP
Ga0310915_106280402	3300031573	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPG
Ga0318560_102648202	3300031682	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPAVPLAQPGGPA
Ga0306917_101055091	3300031719	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLA
Ga0318501_105111621	3300031736	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPARLG
Ga0306918_103373652	3300031744	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPP
Ga0318546_102199202	3300031771	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRE
Ga0318543_103941901	3300031777	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPPVPLAQP
Ga0318576_101762871	3300031796	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQFVPPS
Ga0318568_109781771	3300031819	Soil	MPAGVRAIAAALAMVSVPFTAVAQVVPPGAQIVPPSVQPGRE
Ga0310917_100914581	3300031833	Soil	MLACVRASAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPP
Ga0310904_110008042	3300031854	Soil	MFAGVRAIATALAMVSVSCAAVAQGAPPGAQIVPPSDQPG
Ga0306919_110120791	3300031879	Soil	MVACVRPIAAALAMVSVSYAAVAQVVPPGAQIVPPSDQPGRERERFERPPVPLA
Ga0306925_115845041	3300031890	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPP
Ga0306923_107535022	3300031910	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRE
Ga0306926_120468952	3300031954	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQ
Ga0310903_105892811	3300032000	Soil	MFAGARAIATALAMVSVSFAAVAQGVPPGAQIVPPSDQPG
Ga0318563_106358491	3300032009	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPG
Ga0310906_103762751	3300032013	Soil	MFAGVRAIATALAMVSVSFAAVAQGVPPAAQIVPPS
Ga0310911_100480155	3300032035	Soil	MLACVRAVAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERE
Ga0310911_108869871	3300032035	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPPVPL
Ga0318532_100723932	3300032051	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRER
Ga0318505_102888681	3300032060	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPLVPLAQPGGPA
Ga0318505_104673251	3300032060	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPP
Ga0318513_102388722	3300032065	Soil	MPAGVRAIAAALAMVSVPFTAAAQVVPPGAQIVPPSVQ
Ga0318514_101518162	3300032066	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERFERPAVP
Ga0318514_105069473	3300032066	Soil	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQIVPPSDQPGRERERF
Ga0318518_100171065	3300032090	Soil	MLACVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGR
Ga0318540_101148642	3300032094	Soil	MLACVRASAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPG
Ga0307472_1020039621	3300032205	Hardwood Forest Soil	MVACVRPIAAALAMVSVSFAAVAQVVPPGAQNVPPS
Ga0306920_1001439146	3300032261	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPS
Ga0310914_105973381	3300033289	Soil	MLVGIRTVAAALGMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPPVPL
Ga0310914_111479611	3300033289	Soil	MPAGVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSD
Ga0318519_102419943	3300033290	Soil	MLSCVRAIAAALAMVSVSFAAVAQVVPPGAQIVPPSAQPGRERERFERPAVP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences