Metagenome Family F040830

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040830
Family Type	Metagenome
Number of Sequences	161
Average Sequence Length	46 residues
Representative Sequence	VHFGIFVEEMRQGASQAGAFRDIFELADRAEAWGVDCVWLGE
Number of Associated Samples	137
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	59.01 %
% of genes near scaffold ends (potentially truncated)	98.14 %
% of genes from short scaffolds (< 2000 bps)	93.17 %
Associated GOLD sequencing projects	133
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.61

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (81.366 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (14.907 % of family members)
Environment Ontology (ENVO)	Unclassified (33.540 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.720 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 38.57% β-sheet: 0.00% Coil/Unstructured: 61.43%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.61
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.61
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF00676	E1_dh	18.63
PF00496	SBP_bac_5	10.56
PF13533	Biotin_lipoyl_2	8.07
PF01522	Polysacc_deac_1	6.21
PF00296	Bac_luciferase	6.21
PF08352	oligo_HPY	3.11
PF04226	Transgly_assoc	2.48
PF03328	HpcH_HpaI	2.48
PF09347	DUF1989	2.48
PF00106	adh_short	1.86
PF00248	Aldo_ket_red	1.24
PF01266	DAO	1.24
PF00529	CusB_dom_1	1.24
PF07687	M20_dimer	1.24
PF02780	Transketolase_C	1.24
PF02515	CoA_transf_3	0.62
PF12867	DinB_2	0.62
PF04366	Ysc84	0.62
PF07690	MFS_1	0.62
PF03171	2OG-FeII_Oxy	0.62
PF00753	Lactamase_B	0.62
PF01547	SBP_bac_1	0.62
PF01894	UPF0047	0.62
PF01594	AI-2E_transport	0.62
PF03992	ABM	0.62
PF13360	PQQ_2	0.62
PF05721	PhyH	0.62
PF08028	Acyl-CoA_dh_2	0.62
PF13561	adh_short_C2	0.62
PF13458	Peripla_BP_6	0.62
PF13408	Zn_ribbon_recom	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	18.63
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	18.63
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	6.21
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	6.21
COG0469	Pyruvate kinase	Carbohydrate transport and metabolism [G]	2.48
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	2.48
COG2301	Citrate lyase beta subunit	Carbohydrate transport and metabolism [G]	2.48
COG3836	2-keto-3-deoxy-L-rhamnonate aldolase RhmA	Carbohydrate transport and metabolism [G]	2.48
COG0432	Thiamin phosphate synthase YjbQ, UPF0047 family	Coenzyme transport and metabolism [H]	0.62
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.62
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.62
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.62
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.62
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	81.37 %
Unclassified	root	N/A	18.63 %

Name	Rank	Taxonomy	Distribution
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	19.25 %
Unclassified	root	N/A	18.63 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.70 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	3.11 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.24 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	19.25 %
Unclassified	root	N/A	18.63 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6.83 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	3.11 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	19.25 %
Unclassified	root	N/A	18.63 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	3.11 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.24 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	12.42 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	3.11 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.62 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.18 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	3.11 %
Candidatus Rokubacteria bacterium 13_1_40CM_68_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1.24 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.62 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.18 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3.11 %
Candidatus Rokubacteria bacterium 13_1_40CM_68_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1.24 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.62 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.62 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	18.63 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	11.18 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	3.11 %
Candidatus Rokubacteria bacterium 13_1_40CM_68_15	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1.24 %
Bradyrhizobium sp. YR681	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	0.62 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.62 %
Rhodospirillales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c1040882	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
2228664022\|INPgaii200_c1150781	All Organisms → cellular organisms → Bacteria	521	Open in IMG/M
3300000550\|F24TB_10476470	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300000559\|F14TC_100204429	All Organisms → cellular organisms → Bacteria	2510	Open in IMG/M
3300001431\|F14TB_100870221	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300001431\|F14TB_103066917	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300001661\|JGI12053J15887_10254814	All Organisms → cellular organisms → Bacteria	871	Open in IMG/M
3300004009\|Ga0055437_10093754	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300004479\|Ga0062595_101026622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	712	Open in IMG/M
3300005289\|Ga0065704_10217983	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300005294\|Ga0065705_11024223	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. YR681	541	Open in IMG/M
3300005332\|Ga0066388_100352638	All Organisms → cellular organisms → Bacteria	2118	Open in IMG/M
3300005332\|Ga0066388_107780931	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300005347\|Ga0070668_100941387	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005440\|Ga0070705_100023620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3305	Open in IMG/M
3300005446\|Ga0066686_10850515	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005450\|Ga0066682_10155217	All Organisms → cellular organisms → Bacteria	1458	Open in IMG/M
3300005459\|Ga0068867_101759138	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300005467\|Ga0070706_101534084	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005468\|Ga0070707_100398450	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1336	Open in IMG/M
3300005518\|Ga0070699_100352389	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1326	Open in IMG/M
3300005518\|Ga0070699_101527871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	612	Open in IMG/M
3300005546\|Ga0070696_100578754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	903	Open in IMG/M
3300005549\|Ga0070704_101948849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	545	Open in IMG/M
3300005569\|Ga0066705_10647747	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	642	Open in IMG/M
3300005575\|Ga0066702_10917473	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	523	Open in IMG/M
3300005615\|Ga0070702_101432450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300005719\|Ga0068861_100328305	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1334	Open in IMG/M
3300005764\|Ga0066903_106035579	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005842\|Ga0068858_102477710	All Organisms → cellular organisms → Bacteria → Proteobacteria	512	Open in IMG/M
3300005843\|Ga0068860_101707618	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300006031\|Ga0066651_10505713	All Organisms → cellular organisms → Bacteria	640	Open in IMG/M
3300006031\|Ga0066651_10784579	Not Available	516	Open in IMG/M
3300006172\|Ga0075018_10455220	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300006797\|Ga0066659_10726767	All Organisms → cellular organisms → Bacteria	814	Open in IMG/M
3300006804\|Ga0079221_11075844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	612	Open in IMG/M
3300006845\|Ga0075421_102078358	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300006845\|Ga0075421_102096137	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300006852\|Ga0075433_10590198	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300006854\|Ga0075425_101124940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	894	Open in IMG/M
3300006854\|Ga0075425_101277844	All Organisms → cellular organisms → Bacteria	832	Open in IMG/M
3300006854\|Ga0075425_102404252	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300006871\|Ga0075434_101776904	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300006871\|Ga0075434_101970932	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300006880\|Ga0075429_100939411	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300006903\|Ga0075426_10115749	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300006904\|Ga0075424_101998712	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300007004\|Ga0079218_13705420	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300007076\|Ga0075435_101455895	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300009012\|Ga0066710_104402082	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300009088\|Ga0099830_10400161	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1110	Open in IMG/M
3300009089\|Ga0099828_10143056	All Organisms → cellular organisms → Bacteria	2107	Open in IMG/M
3300009089\|Ga0099828_11752655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium	546	Open in IMG/M
3300009100\|Ga0075418_12524272	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300009147\|Ga0114129_10045174	All Organisms → cellular organisms → Bacteria	6193	Open in IMG/M
3300009147\|Ga0114129_11102390	Not Available	994	Open in IMG/M
3300009148\|Ga0105243_12428156	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	563	Open in IMG/M
3300009156\|Ga0111538_12373471	All Organisms → cellular organisms → Bacteria	666	Open in IMG/M
3300009792\|Ga0126374_11593802	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	539	Open in IMG/M
3300010047\|Ga0126382_10658716	Not Available	871	Open in IMG/M
3300010047\|Ga0126382_11501750	Not Available	620	Open in IMG/M
3300010047\|Ga0126382_12523471	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	502	Open in IMG/M
3300010321\|Ga0134067_10150102	All Organisms → cellular organisms → Bacteria	831	Open in IMG/M
3300010335\|Ga0134063_10506272	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	605	Open in IMG/M
3300010337\|Ga0134062_10055551	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1622	Open in IMG/M
3300010358\|Ga0126370_11728220	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300010362\|Ga0126377_10305991	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300010362\|Ga0126377_12229892	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300010362\|Ga0126377_12466388	Not Available	596	Open in IMG/M
3300010366\|Ga0126379_11430693	Not Available	797	Open in IMG/M
3300010376\|Ga0126381_102008934	All Organisms → cellular organisms → Bacteria	833	Open in IMG/M
3300010398\|Ga0126383_10187771	Not Available	1971	Open in IMG/M
3300010398\|Ga0126383_10351184	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300010398\|Ga0126383_12553650	All Organisms → cellular organisms → Bacteria	595	Open in IMG/M
3300010399\|Ga0134127_11030822	Not Available	884	Open in IMG/M
3300010400\|Ga0134122_10583883	Not Available	1029	Open in IMG/M
3300010401\|Ga0134121_10338320	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	1343	Open in IMG/M
3300011269\|Ga0137392_11331128	Not Available	577	Open in IMG/M
3300011271\|Ga0137393_10245871	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300012202\|Ga0137363_10202014	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1595	Open in IMG/M
3300012202\|Ga0137363_10280837	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1362	Open in IMG/M
3300012203\|Ga0137399_10506056	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1013	Open in IMG/M
3300012205\|Ga0137362_10226653	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1612	Open in IMG/M
3300012207\|Ga0137381_10365919	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1257	Open in IMG/M
3300012211\|Ga0137377_11258566	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300012353\|Ga0137367_10580034	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300012358\|Ga0137368_10860504	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300012360\|Ga0137375_11284912	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300012363\|Ga0137390_10516041	All Organisms → cellular organisms → Bacteria	1168	Open in IMG/M
3300012363\|Ga0137390_10599654	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1069	Open in IMG/M
3300012363\|Ga0137390_10922566	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	827	Open in IMG/M
3300012485\|Ga0157325_1042072	All Organisms → cellular organisms → Bacteria	500	Open in IMG/M
3300012685\|Ga0137397_10548567	All Organisms → cellular organisms → Bacteria	861	Open in IMG/M
3300012896\|Ga0157303_10072159	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	769	Open in IMG/M
3300012922\|Ga0137394_10359226	Not Available	1243	Open in IMG/M
3300012923\|Ga0137359_10905624	All Organisms → cellular organisms → Bacteria	760	Open in IMG/M
3300012929\|Ga0137404_11565213	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300012930\|Ga0137407_10102337	Not Available	2458	Open in IMG/M
3300012931\|Ga0153915_13135326	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012971\|Ga0126369_13231791	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	534	Open in IMG/M
3300013297\|Ga0157378_10917506	All Organisms → cellular organisms → Bacteria	907	Open in IMG/M
3300014321\|Ga0075353_1190825	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300015373\|Ga0132257_101484350	Not Available	865	Open in IMG/M
3300015374\|Ga0132255_104028746	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300016404\|Ga0182037_11413257	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300017973\|Ga0187780_10792463	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	685	Open in IMG/M
3300018027\|Ga0184605_10017657	All Organisms → cellular organisms → Bacteria → Proteobacteria	2824	Open in IMG/M
3300018028\|Ga0184608_10107947	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1169	Open in IMG/M
3300018060\|Ga0187765_10756788	Not Available	644	Open in IMG/M
3300018064\|Ga0187773_10464414	Not Available	747	Open in IMG/M
3300018429\|Ga0190272_10625942	Not Available	950	Open in IMG/M
3300018431\|Ga0066655_10701458	All Organisms → cellular organisms → Bacteria	685	Open in IMG/M
3300018482\|Ga0066669_11405825	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	632	Open in IMG/M
3300019886\|Ga0193727_1151844	Not Available	628	Open in IMG/M
3300019888\|Ga0193751_1238860	Not Available	571	Open in IMG/M
3300020015\|Ga0193734_1061970	Not Available	672	Open in IMG/M
3300020583\|Ga0210401_11192420	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	620	Open in IMG/M
3300021086\|Ga0179596_10007811	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	3360	Open in IMG/M
3300021090\|Ga0210377_10073103	All Organisms → cellular organisms → Bacteria	2331	Open in IMG/M
3300021344\|Ga0193719_10163449	Not Available	958	Open in IMG/M
3300021344\|Ga0193719_10297089	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300025885\|Ga0207653_10029083	All Organisms → cellular organisms → Bacteria	1780	Open in IMG/M
3300025899\|Ga0207642_10365526	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300025917\|Ga0207660_10387815	Not Available	1123	Open in IMG/M
3300025923\|Ga0207681_10530369	All Organisms → cellular organisms → Bacteria	967	Open in IMG/M
3300025923\|Ga0207681_11381542	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium 13_1_40CM_68_15	591	Open in IMG/M
3300025926\|Ga0207659_11304412	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	623	Open in IMG/M
3300026089\|Ga0207648_11707153	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	591	Open in IMG/M
3300026313\|Ga0209761_1269811	Not Available	624	Open in IMG/M
3300026315\|Ga0209686_1112970	All Organisms → cellular organisms → Bacteria	923	Open in IMG/M
3300026327\|Ga0209266_1089755	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1372	Open in IMG/M
3300027364\|Ga0209967_1077849	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300027577\|Ga0209874_1044640	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1167	Open in IMG/M
3300027577\|Ga0209874_1149823	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300027787\|Ga0209074_10430605	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	559	Open in IMG/M
3300027862\|Ga0209701_10314707	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	895	Open in IMG/M
3300027907\|Ga0207428_11034053	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	576	Open in IMG/M
3300027909\|Ga0209382_10946302	Not Available	903	Open in IMG/M
3300027957\|Ga0209857_1070900	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	597	Open in IMG/M
3300028047\|Ga0209526_10137415	All Organisms → cellular organisms → Bacteria	1714	Open in IMG/M
3300028381\|Ga0268264_11597588	Not Available	663	Open in IMG/M
3300028597\|Ga0247820_11291285	Not Available	529	Open in IMG/M
3300028809\|Ga0247824_10171121	All Organisms → cellular organisms → Bacteria	1177	Open in IMG/M
3300028889\|Ga0247827_10497321	Not Available	762	Open in IMG/M
3300031198\|Ga0307500_10127317	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300031226\|Ga0307497_10425131	Not Available	640	Open in IMG/M
3300031720\|Ga0307469_10671572	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	936	Open in IMG/M
3300031724\|Ga0318500_10738951	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300031740\|Ga0307468_101558632	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	615	Open in IMG/M
3300031908\|Ga0310900_10882703	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300032013\|Ga0310906_10034337	All Organisms → cellular organisms → Bacteria	2349	Open in IMG/M
3300032174\|Ga0307470_10256952	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300032174\|Ga0307470_11047278	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300032180\|Ga0307471_100736701	All Organisms → cellular organisms → Bacteria	1151	Open in IMG/M
3300032205\|Ga0307472_102582340	Not Available	517	Open in IMG/M
3300033158\|Ga0335077_11529439	Not Available	638	Open in IMG/M
3300033233\|Ga0334722_10347576	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1076	Open in IMG/M
3300033412\|Ga0310810_10165219	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300033813\|Ga0364928_0170316	Not Available	540	Open in IMG/M
3300034178\|Ga0364934_0168543	All Organisms → cellular organisms → Bacteria	830	Open in IMG/M
3300034818\|Ga0373950_0165388	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	513	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	77.02%
Host-Associated	Host-Associated	22.98%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	72.67%
Plants	Host-Associated → Plants	22.98%
Aquatic	Environmental → Aquatic	4.35%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	15.53%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.45%
Freshwater	Environmental → Aquatic → Freshwater	1.86%
Sediment	Environmental → Aquatic → Sediment	1.86%
Floodplain	Environmental → Terrestrial → Floodplain	1.24%
Marine	Environmental → Aquatic → Marine	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.04%
Loam	Environmental → Terrestrial → Soil → Loam	12.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.42%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.86%
Sand	Environmental → Terrestrial → Soil → Sand	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.86%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.24%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.62%
Lake	Environmental → Aquatic → Freshwater → Lake	0.62%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.62%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.16%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	8.70%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.21%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.59%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.11%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.11%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	3.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.11%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.86%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.86%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.24%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.62%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.62%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	14.91%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	11.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.21%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.21%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.11%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	3.11%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.48%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.86%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	1.86%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	1.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.24%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.24%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.24%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.62%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.62%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.62%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.62%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.62%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.62%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Rhizosphere Soil	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300004009	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005450	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131	Environmental	Open in IMG/M
3300005459	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2	Host-Associated	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010335	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09082015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012353	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012485	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.7.old.040610	Host-Associated	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012931	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014321	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleB_D1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300018027	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300020015	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021090	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redo	Environmental	Open in IMG/M
3300021344	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2	Environmental	Open in IMG/M
3300025885	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026313	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cm (SPAdes)	Environmental	Open in IMG/M
3300026315	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_126 (SPAdes)	Environmental	Open in IMG/M
3300026327	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132 (SPAdes)	Environmental	Open in IMG/M
3300027364	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)	Host-Associated	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033233	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_bottom	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M
3300033813	Sediment microbial communities from East River floodplain, Colorado, United States - 30_j17	Environmental	Open in IMG/M
3300034178	Sediment microbial communities from East River floodplain, Colorado, United States - 27_j17	Environmental	Open in IMG/M
3300034818	Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_3	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_10408822	2228664022	Soil	MHFGIFVEEMRYGASQVSAFRDAFDLAQRAEDWGLDCVWLGEIH
INPgaii200_11507811	2228664022	Soil	MHFGLFVEEMRRGASPISAFDDAFELADMADTWGMDCVWLG
F24TB_104764702	3300000550	Soil	MHFGIFVEEMRYGASQVSAFRDAFELAHRAEDWGLDCVWLGEPRRWW*
F14TC_1002044291	3300000559	Soil	VHVGLFVEELRQGATQTSAFRDIFETVERAEAWGIDCVWLGEIHFT
F14TB_1008702211	3300001431	Soil	VHVGLFVEELRQGATQTSAFRDIFETVERAEAWGIDCVWLGEIHFTPSRSIISA
F14TB_1030669171	3300001431	Soil	MHFGLFVEEMRRGASPISAFDDAFELADMADTWGMDCVWLGEIHFT
JGI12053J15887_102548141	3300001661	Forest Soil	MHFGLFVEEMRRGASPISAFDDAFELADMADAWGMDCVWLGEIHFTPARSVISASLLVAS
Ga0055437_100937541	3300004009	Natural And Restored Wetlands	VHFGIFIEELRQGASQATAFRDAFELADRAEAWGADCVWLG
Ga0062595_1010266221	3300004479	Soil	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPVRSVIS
Ga0065704_102179832	3300005289	Switchgrass Rhizosphere	MHFGLFVEEMRRGASPISAFDDAFELADMADTWGMDCVWLGEIHFTPARSVISASL
Ga0065705_110242231	3300005294	Switchgrass Rhizosphere	VHFGIFVEELRHGATQAAAFRDIFETADHAEAWGIDCAWLGEIHFTPSRSIIS
Ga0066388_1003526382	3300005332	Tropical Forest Soil	MHFGVFAEEMRHGASPASAFRDVFELAERAEASGIDCVWL
Ga0066388_1077809311	3300005332	Tropical Forest Soil	VHIGLFIEEMRQGASQDQTACFRDIFEVADRAEAWGIDCVWLGEIHFTP
Ga0070668_1009413872	3300005347	Switchgrass Rhizosphere	MHFGIFVEEMRYGASQVSAFRDAFDLAQRAEDWGLDCVWLG
Ga0070705_1000236204	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	VHFGIFVEEMRQGSGQSQTSAFRDIFEVADHADAWGADCVWLGEIHF
Ga0066686_108505151	3300005446	Soil	MHCGLFIEEMRQGADQATAFRDVFELADRAEAWGADCVWLGEIHF
Ga0066682_101552173	3300005450	Soil	MHFGLFVEEMRRGATAVSAFDDAFGLADLAEAWGMDCVWLGEI
Ga0068867_1017591382	3300005459	Miscanthus Rhizosphere	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPVRSVISASLQVAS
Ga0070706_1015340841	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MHFGLFVEEMRRGASPVSAFDDAFELADMAEAWGMDCVWLGEIHF
Ga0070707_1003984502	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MHFGIFVEELRYGASQAEAFRDIFETADRAEAGGVDCVWLGEIHFT
Ga0070699_1003523891	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VHFGVFVEELRHGATQAGAFRDIFETAAQAEAGGIDCVWLGEIHF
Ga0070699_1015278711	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLG
Ga0070696_1005787541	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VHFGIFVEEMRQGTSQPGAFRDVFELADRAEAWGIDCVWLGEIHF
Ga0070704_1019488492	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VHFGIFVEEKRHGVTQHDAFRDIFELADRAEAWGVDCVWLGEIHFTP
Ga0066705_106477472	3300005569	Soil	VHFGLFVEEMRQGASQTSAFRDVFELAERADALGIDCVW
Ga0066702_109174731	3300005575	Soil	MQAVHVGLFVEEMRQGATQTSAFRDIFDTAERADALGIDC
Ga0070702_1014324501	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	MHFGLFVEEMRRGATPISAFDDAFELADIAETWGMDCVWLGEIHFTPSRSVISASLLV
Ga0068861_1003283051	3300005719	Switchgrass Rhizosphere	VHFGIFVEEMRQGSSQSQTSAFRDIFEVADHADAWGADCVWLGEIHFTPT
Ga0066903_1060355791	3300005764	Tropical Forest Soil	VPGPGKAPAWYNLPMHFGLFVEEMRRGATAVSAFDDAFDLADIAEAWGMDCVWLGEIHFTPARSVISASLLVASSI
Ga0068858_1024777102	3300005842	Switchgrass Rhizosphere	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPV
Ga0068860_1017076181	3300005843	Switchgrass Rhizosphere	VHFGIFVEEMRQGATQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPVRSVISA
Ga0066651_105057132	3300006031	Soil	VHFGIFVEEMRQGASQAGAFRDVFELADRAEAWGAGCVWLGEIHFTPVRSVISASLQVAS
Ga0066651_107845792	3300006031	Soil	VHFGIFVEEKRHGVTQAEAFRDIFELADRADAWGV
Ga0075018_104552202	3300006172	Watersheds	MGAVHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISA
Ga0066659_107267671	3300006797	Soil	MHFGLFVEEMRRGASPVSAFDDAFELADMAEAWGMDCVWLGEIHFTPARSVISA
Ga0079221_110758441	3300006804	Agricultural Soil	LHFGIFVEELRHGATQAGAFRDIIETAAQAETGGVDCVWL
Ga0075421_1020783581	3300006845	Populus Rhizosphere	VHFGIFVEEMRQGANQATAFRDVFELADRAEAWGADCVWLGEIHFTP
Ga0075421_1020961371	3300006845	Populus Rhizosphere	VHIGLFVEEMRQGATQPEAFRDIFALADRAEAWGIDCLWLGEIHFTPVRS
Ga0075433_105901982	3300006852	Populus Rhizosphere	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMDCVWLGEIH
Ga0075425_1011249402	3300006854	Populus Rhizosphere	VHFGIFVEEMRQGSSQDQAAAFRDIFETAEHADAWGADCVWLGEIHFTPTRSVIS
Ga0075425_1012778442	3300006854	Populus Rhizosphere	MHFGIFVEEMRYGASQVSAFRDAFDLAQRAEDWGLDCVW
Ga0075425_1024042522	3300006854	Populus Rhizosphere	MHFGLFVEEMRRGATPISAFDDAFELADIAETWGMDCVWLGEIHF
Ga0075434_1017769041	3300006871	Populus Rhizosphere	VHFGIFVEEMRQGANQATAFRDVFELADRAEAWGADCVWLGEIHFTPT
Ga0075434_1019709321	3300006871	Populus Rhizosphere	MHFGLFVEEMRRGATPVSAFDDAFELADIAETWGMDCVWLGEIHFT
Ga0075429_1009394112	3300006880	Populus Rhizosphere	MHFGLFVEEMRRGATPISAFDDAFELADMAETWGMDCV
Ga0075426_101157491	3300006903	Populus Rhizosphere	MHFGLFVEEMRRGATPVSAFDDAFELADMAETWGMDCVWLGEIHF
Ga0075424_1019987121	3300006904	Populus Rhizosphere	MHFGIFVEEMRQGLSQTAAFREAFDVAERAEELGVDC
Ga0079218_137054202	3300007004	Agricultural Soil	MHVGIFVEELRQGEDQATSFREAFALAERADALGIECVWLGEI
Ga0075435_1014558952	3300007076	Populus Rhizosphere	MHFGLFVEEMRRGATPISAFDDAFELADIAETWGMDCVWLGEIHFTPS
Ga0066710_1044020821	3300009012	Grasslands Soil	MHVGIFVEEMRHGVDQVGAFRDAFAIAERADAWGADGVWRGGTHFAPTRSVISAREAGSGFGAPC
Ga0099830_104001611	3300009088	Vadose Zone Soil	VHFGIFVEEIRHGANQIASFRDVFEQADRAEAWGIDCVWLGEIH
Ga0099828_101430562	3300009089	Vadose Zone Soil	VHFGIFVEELGHGATQAGAFRDIFETADRAEAWGIDCVWLGE
Ga0099828_117526551	3300009089	Vadose Zone Soil	MHFGIFVEELRYGASQAAAFRDIFETADRAEAWGID
Ga0075418_125242721	3300009100	Populus Rhizosphere	MHFGLFVEEMRRGATPISAFDDAFELADMAETWGMDCVW
Ga0114129_100451741	3300009147	Populus Rhizosphere	VHFGIFVEELRHGATQAGAFRDIFETADHAEAWGID
Ga0114129_111023901	3300009147	Populus Rhizosphere	VHVGIFIEEMRQGSSQNQAAAFRDIFEVADHADAWGADCVWLGEIHFTP
Ga0105243_124281562	3300009148	Miscanthus Rhizosphere	VHFGIFVEEMRQGSSQSQTSAFRDIFEVADHADAWGADCVWLGEI
Ga0111538_123734711	3300009156	Populus Rhizosphere	MHFGLFVEEMRRGATPVSAFDDAFELADIAETWGMDCVWLGEIHFTPSRSVISASL
Ga0126374_115938021	3300009792	Tropical Forest Soil	VHVGIFIEELRQGASQAEAFRDIFELADRCEAWGVPCVWLGEIHFTPTR
Ga0126382_106587161	3300010047	Tropical Forest Soil	MALGEATVHFGLFIEEIRQGASQASSFRDIFELAGRAEALGIDCVWLGEIH
Ga0126382_115017502	3300010047	Tropical Forest Soil	MFVEEKRHDATQRSAFRDVFELADRAEAWGIDCVWLG
Ga0126382_125234712	3300010047	Tropical Forest Soil	VHVGIFIEELRQGASQAQAFRDIFELADRCEAWGVPCVWLGEIHFTPTRSVISA
Ga0134067_101501022	3300010321	Grasslands Soil	MHFGIFVEEMRRGASQGQAFQETFELADTAEACKA*
Ga0134063_105062722	3300010335	Grasslands Soil	MRQGATQTSAFRDIFATAERADALGIDCVWLGEIHFTPT
Ga0134062_100555511	3300010337	Grasslands Soil	MQAVHVGLFVEEMRQGATQTSAFRDIFDTAERADALGID
Ga0126370_117282202	3300010358	Tropical Forest Soil	VHFGIFVEELRQGATQASAFRDIFELTERAEAWGIDCVWLGEI
Ga0126377_103059913	3300010362	Tropical Forest Soil	VHVGLFVEELRQGATQTSAFRDIFESAERAEAWGIDCVWLGEIHFTPSRSIISASLQ
Ga0126377_122298921	3300010362	Tropical Forest Soil	VHVGLFVEELRQGATQTSAFRDIFETADRAEAWGIDCVWLGEIHFTPSRSIISASLQ
Ga0126377_124663881	3300010362	Tropical Forest Soil	VHIGLFIEEMRQGSNQDQPTAFRDIFEVADRAEAWGIDCVWL
Ga0126379_114306932	3300010366	Tropical Forest Soil	VPEEAAVHFGIFVEEKRHGVTQHDAFRDIFELADR
Ga0126381_1020089341	3300010376	Tropical Forest Soil	MHFGLFVEEMRRGATAISAFDDAFELADNAEAWGMDCVWLGEIHFTPSRSVI
Ga0126383_101877711	3300010398	Tropical Forest Soil	VHFGVFIEELRHGATQASAFRDIFEVADRAEAWGLNCAWL
Ga0126383_103511842	3300010398	Tropical Forest Soil	VHVGIFIEELRQGASQAEAFRDIFELADRCEAWGVPCV*
Ga0126383_125536501	3300010398	Tropical Forest Soil	MHFGIFVEEMRYGASQVSAFRDAFELAERAEDWGLDC
Ga0134127_110308221	3300010399	Terrestrial Soil	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLW
Ga0134122_105838832	3300010400	Terrestrial Soil	VHFGIFVEEMRQGASQPTAFRDVFELADRAEAWGVDCLWLGEIHFTP
Ga0134121_103383201	3300010401	Terrestrial Soil	VHFGIFVEEMRQGSSQSQTSAFRDIFEIADHADAWGADCVWLGEIHFTPTRSV
Ga0137392_113311282	3300011269	Vadose Zone Soil	VSIEAVHFGIFVEEIRYGASQVESFRDIFEQADRAEAWGIDCVWLGEIHFTPSRSVIS
Ga0137393_102458711	3300011271	Vadose Zone Soil	LTPARWAVTIGVVHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISA
Ga0137363_102020144	3300012202	Vadose Zone Soil	VHFGIFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHF
Ga0137363_102808373	3300012202	Vadose Zone Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHF
Ga0137399_105060561	3300012203	Vadose Zone Soil	VHVGIFVEEMRQGASQRAAFRDVFELADRADACGIDCVWLGEIHFTPT
Ga0137362_102266531	3300012205	Vadose Zone Soil	VHFGIFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISAS
Ga0137381_103659194	3300012207	Vadose Zone Soil	VHFGIFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTP
Ga0137377_112585662	3300012211	Vadose Zone Soil	MHFGLFVEEMRRGATTVSAFDDAFELADIAEAWGMDCVWLGEIHF
Ga0137367_105800342	3300012353	Vadose Zone Soil	MHFGIFVEEMRYWANQVSAFRDAFELAQHAEDWGLDCVWL
Ga0137368_108605042	3300012358	Vadose Zone Soil	MHFGIFVEEMRYGTNQISAFQNAFELAQHAEDWGLDC
Ga0137375_112849121	3300012360	Vadose Zone Soil	MHVGIFVEEMRRGVDQATAFRDVFALAERAEARGIDCVWLGEIHFTP
Ga0137390_105160412	3300012363	Vadose Zone Soil	MADAMHFGIFVEEMRQGADQAAAFRDVFETAERAEAWGVDCVWLGE
Ga0137390_105996542	3300012363	Vadose Zone Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISASL
Ga0137390_109225661	3300012363	Vadose Zone Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISASLQVA
Ga0157325_10420721	3300012485	Arabidopsis Rhizosphere	MHFKIFVKEMRYGASQVSAFRDAFDLAQRTEDWGLDCVW
Ga0137397_105485672	3300012685	Vadose Zone Soil	VHFGLFVEEMRQGASQTSAFRDVFELAERADALGIDCVWLGEIHF
Ga0157303_100721591	3300012896	Soil	VHFGVFVEELRHGATQAGAFRDIFETAAQAEAGGIDCVWLGEIHFTPS
Ga0137394_103592261	3300012922	Vadose Zone Soil	MHFGLFVEEMRRGATAVSAFDDAFGLADLAEAWGMDCVWLGEIHFTPARS
Ga0137359_109056242	3300012923	Vadose Zone Soil	MHFGLFVEEMRRGATTVSAFDDAFELADIAEAWGMDCVWLG
Ga0137404_115652131	3300012929	Vadose Zone Soil	MHFGLFVEEMRRGATAVSAFDDAFGLAELAEAWGMDCVWLGEIHFTPARSVISASLL
Ga0137407_101023371	3300012930	Vadose Zone Soil	MHFGLFVEEMRRGANAVSAFDDAFELADMAEAWGMDCVWLGEIHFTPARSVIS
Ga0153915_131353262	3300012931	Freshwater Wetlands	MHVGIFVEELRHGATQVSAFRDIFELSDRAEAWGV
Ga0126369_132317911	3300012971	Tropical Forest Soil	VHVGLFVEEMRQGADQVSAFRDIFDTAQRADALGI
Ga0157378_109175061	3300013297	Miscanthus Rhizosphere	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGM
Ga0075353_11908252	3300014321	Natural And Restored Wetlands	VHFGIFVEEMRQGSSQDQASAFRDIFEVADHADAWGADCVWLGEIHFT
Ga0132257_1014843501	3300015373	Arabidopsis Rhizosphere	MHIGLFVEEMRQGATQPAAFRDIFELADRAEAWAIDCVWLGEI
Ga0132255_1040287462	3300015374	Arabidopsis Rhizosphere	MHFGLFVEEMRRGATPVSAFDDAFELADIAEAWGMDCVWLGEIHFT
Ga0182037_114132571	3300016404	Soil	MHFGLFVEEMRRGATAISAFDDAFELADSAEAWGMDCVWLG
Ga0187780_107924631	3300017973	Tropical Peatland	VHFGIFVEELRQGANQAEAFRDVFETADRAEAWGVDCV
Ga0184605_100176571	3300018027	Groundwater Sediment	VHFGIFVEEMRQGASQASAFRDVFELADRAEAWGIDCVWLGA
Ga0184608_101079471	3300018028	Groundwater Sediment	VHFGIFVEELRHGATQAGAFRDIFETADHAEAWGIDCAWLGEIHFT
Ga0187765_107567881	3300018060	Tropical Peatland	MALEEATMHFGLFIEEIRQGASQVASFRDIFELAGRAETLGVDCVWLGE
Ga0187773_104644141	3300018064	Tropical Peatland	MHFGLFVEEIRQGATQAAAFRDIFELAERAEALGIDCV
Ga0190272_106259422	3300018429	Soil	VHFGIFVEELRHGATQAGAFRDIFETADHAEAWGIDCAWLGEIHFTP
Ga0066655_107014582	3300018431	Grasslands Soil	MHFGIFVEEMRYGSNQVSAFRDAFELAQRAEDWGLDCVW
Ga0066669_114058252	3300018482	Grasslands Soil	VHFGLFVEEMRQGASQTSAFRDVFELAERADTLGI
Ga0193727_11518442	3300019886	Soil	VHFGIFVEELRHGATQAAAFRDIFETADHAEAWGIDCAWLGEIHFTPSRSIISASLQVAS
Ga0193751_12388602	3300019888	Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISASLQ
Ga0193734_10619702	3300020015	Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVI
Ga0210401_111924201	3300020583	Soil	VHFGIFVEELRQGATQAAAFRDVFETADRAEAWGIDCVWLGEIYFTPSRSVISA
Ga0179596_100078111	3300021086	Vadose Zone Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIHFTPSRSVISASLQVAS
Ga0210377_100731035	3300021090	Groundwater Sediment	VHFGIFVEEMRQGSSQTSAFRDIFELAERAEAWGVDCVWLGEIHF
Ga0193719_101634491	3300021344	Soil	VHFGIFVEELRHGATQAAAFRDIFETADHAEAWGID
Ga0193719_102970891	3300021344	Soil	MHFGLFVEEMRRGATPVSAFDDAFELADIAEAWGMDCVWLGEIHFTPARSVISASLLM
Ga0207653_100290833	3300025885	Corn, Switchgrass And Miscanthus Rhizosphere	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMDCVWLGEIHFTPARSVISASLLMA
Ga0207642_103655262	3300025899	Miscanthus Rhizosphere	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMD
Ga0207660_103878153	3300025917	Corn Rhizosphere	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPVRSVISASL
Ga0207681_105303691	3300025923	Switchgrass Rhizosphere	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMDCVWLGEIHFTPARSVI
Ga0207681_113815422	3300025923	Switchgrass Rhizosphere	VHFGIFVEEMRQGSSQSQTSAFRDIFEVADHADAW
Ga0207659_113044122	3300025926	Miscanthus Rhizosphere	VHFGVFVEELRHGATQAGAFRDIFETAAQAEAGGIDCVWLGEIHFTPSRSII
Ga0207648_117071531	3300026089	Miscanthus Rhizosphere	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGVDCLWLGEIHFTPVRSVISA
Ga0209761_12698111	3300026313	Grasslands Soil	MHCGLFIEEMRQGADQATAFRDVFELADRAEAWGADCVWLGEIHFTPVRSVIS
Ga0209686_11129701	3300026315	Soil	VHFGLFVEEMRQGASQTSAFRDVFELAERADTLGIDCVWLGE
Ga0209266_10897552	3300026327	Soil	MQAVHVGLFVEEMRQGATQTSAFRDVFDTAERADALGIDCVW
Ga0209967_10778491	3300027364	Arabidopsis Thaliana Rhizosphere	VHVGLFVEELRQGATQSSAFRDIFETADRAEAWGIDCVWLGE
Ga0209874_10446402	3300027577	Groundwater Sand	MHFGIFVEEMRYGANQVSAFRDAFEVAQHAEAWGVDCVWLGEIHFAPTRS
Ga0209874_11498232	3300027577	Groundwater Sand	MHFGIFIEEMRHGASQTRAFRDVFETADRAEAWGVDCVW
Ga0209074_104306052	3300027787	Agricultural Soil	VHFGIFVEELRHGATQAGAFRDIFETAAQAETGGVDCVWLGEIHFTP
Ga0209701_103147071	3300027862	Vadose Zone Soil	VHFGIFVEEIRHGANQIASFRDVFEQADRAEAWGIDCVWLGEI
Ga0207428_110340531	3300027907	Populus Rhizosphere	VHVGIFIEELRQGASQAEAFRDIFELADRCEAWGVPC
Ga0209382_109463021	3300027909	Populus Rhizosphere	VHIGLFVEEMRQGATQPEAFRDIFALADRAEAWGIDCLWLGEIHFTPVRSVISA
Ga0209857_10709001	3300027957	Groundwater Sand	MHFGIFVEEMRYGASQVSAFRDAFELAQQAEAWGLDC
Ga0209526_101374151	3300028047	Forest Soil	VHFGVFVEELRHGATQAGAFRDIFETADRAEAGGVDCVWLGEIRFTPSRSVISAS
Ga0268264_115975881	3300028381	Switchgrass Rhizosphere	VHFGIFVEEKRHGVTQHDAFRDIFELADRAEAWGVDCVW
Ga0247820_112912852	3300028597	Soil	VHIGLFVEELRQGATQPEAFRDIFALADRAEAWGIDCLWLGEIHFTPVRSVISASLQVASAI
Ga0247824_101711211	3300028809	Soil	VHIGLFVEEMRQGATQPEAFRDIFALADRAEAWGIDCLWLGEIHFTPVR
Ga0247827_104973211	3300028889	Soil	MHIGLFVEEMRQGATQPAAFRDIFELADRAEAWGIDCVWLGEI
Ga0307500_101273172	3300031198	Soil	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMDCVWLGEIHFTPARSVISA
Ga0307497_104251312	3300031226	Soil	MHIGLFVEEMRQGATQPAAFRDIFELADRAEAWGIDCVW
Ga0307469_106715723	3300031720	Hardwood Forest Soil	VHFGIFVEEIRYGANQIASFRDVFEQADRAEAWGIDCVWLGEIHFTPSRSVI
Ga0318500_107389512	3300031724	Soil	MHFGLFVEEMRRGATPISAFDDAFELADTAEAWGMDCVW
Ga0307468_1015586322	3300031740	Hardwood Forest Soil	VHFGIFVEEMRQGASQPSAFRDVFELADRAEAWGV
Ga0310900_108827031	3300031908	Soil	MHFGLFVEEMRRGATPVSAFDDAFELADIAEAWGMDCVWLGEIHFTPARSVIS
Ga0310906_100343371	3300032013	Soil	MHVGIFVEEMRQGANQPAAFRDVFELADRAEAWGIDCVWLGEI
Ga0307470_102569522	3300032174	Hardwood Forest Soil	VHIGLFVEEMRQGATQPEAFRDIFELADRAEAWGIDCLWLGEIHFTP
Ga0307470_110472781	3300032174	Hardwood Forest Soil	MHFGLFVEEMRRGATAVSAFDDAFELADIAEAWGMDCVWLGEIHF
Ga0307471_1007367011	3300032180	Hardwood Forest Soil	MRPVHIGLFVEEMRQGANQASAFRDIFETAQRADALGLDCVW
Ga0307472_1025823402	3300032205	Hardwood Forest Soil	VHFGIFVEELRHGATQAGAFRDIFETADRAEAGGVDC
Ga0335077_115294391	3300033158	Soil	VHFGLFIEEIRQGASQASSFRDIFELAGRAEVLGIDCV
Ga0334722_103475762	3300033233	Sediment	VHFGIFVEELRHGATQARAFRDIFETADHAEAWGIDCVWLGEIHFTPSRSIISASLQVAS
Ga0310810_101652191	3300033412	Soil	MHVGIFCEEMRQGSDQPTAFQDVFELADRAEAWGIECV
Ga0364928_0170316_415_540	3300033813	Sediment	VHFGIFVEEMRQGASQAGAFRDIFELADRAEAWGVDCVWLGE
Ga0364934_0168543_690_830	3300034178	Sediment	MDAMHFGLFVEEMRHGATQASAFRDVFEVADRAEAWGIDCVWLGEIH
Ga0373950_0165388_354_512	3300034818	Rhizosphere Soil	VHFGVFVEELRHGATQAGAFRDIFETAAQAEAGGIDCVWLGEIHFTPSRSIIS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F040830

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences