Metagenome / Metatranscriptome Family F040825

Basic Information
Family ID	F040825
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	41 residues
Representative Sequence	MAMFTANDAVLPFPLRQALDRVDAQLDLLIYDAFPLPKAS
Number of Associated Samples	140
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	13.55 %
% of genes near scaffold ends (potentially truncated)	55.28 %
% of genes from short scaffolds (< 2000 bps)	83.85 %
Associated GOLD sequencing projects	135
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Most Common Taxonomy
Group	Bacteria (62.112 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil (8.075 % of family members)
Environment Ontology (ENVO)	Unclassified (29.814 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.205 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 30.88% β-sheet: 0.00% Coil/Unstructured: 69.12%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF12762	DDE_Tnp_IS1595	3.11
PF13561	adh_short_C2	1.86
PF03551	PadR	1.86
PF13460	NAD_binding_10	1.86
PF14329	DUF4386	1.24
PF01833	TIG	1.24
PF01850	PIN	1.24
PF00589	Phage_integrase	1.24
PF13701	DDE_Tnp_1_4	1.24
PF13620	CarboxypepD_reg	1.24
PF13592	HTH_33	1.24
PF00196	GerE	1.24
PF13384	HTH_23	0.62
PF00926	DHBP_synthase	0.62
PF06964	Alpha-L-AF_C	0.62
PF01053	Cys_Met_Meta_PP	0.62
PF13358	DDE_3	0.62
PF13683	rve_3	0.62
PF01610	DDE_Tnp_ISL3	0.62
PF13424	TPR_12	0.62
PF01872	RibD_C	0.62
PF00069	Pkinase	0.62
PF02082	Rrf2	0.62
PF02687	FtsX	0.62
PF02518	HATPase_c	0.62
PF09363	XFP_C	0.62
PF01548	DEDD_Tnp_IS110	0.62
PF13596	PAS_10	0.62
PF00460	Flg_bb_rod	0.62
PF00857	Isochorismatase	0.62
PF02781	G6PD_C	0.62
PF01527	HTH_Tnp_1	0.62
PF12867	DinB_2	0.62
PF01396	zf-C4_Topoisom	0.62
PF01041	DegT_DnrJ_EryC1	0.62
PF13481	AAA_25	0.62
PF03401	TctC	0.62
PF00582	Usp	0.62
PF05368	NmrA	0.62
PF14294	DUF4372	0.62
PF03479	PCC	0.62
PF07728	AAA_5	0.62
PF13426	PAS_9	0.62
PF13519	VWA_2	0.62
PF00571	CBS	0.62
PF00440	TetR_N	0.62
PF12543	DUF3738	0.62
PF05565	Sipho_Gp157	0.62
PF03050	DDE_Tnp_IS66	0.62
PF02771	Acyl-CoA_dh_N	0.62
PF13155	Toprim_2	0.62
PF02954	HTH_8	0.62
PF04932	Wzy_C	0.62
PF13517	FG-GAP_3	0.62
PF07592	DDE_Tnp_ISAZ013	0.62
PF13551	HTH_29	0.62
PF01061	ABC2_membrane	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.48
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	1.86
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	1.86
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	1.86
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.24
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.24
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.24
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.24
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	1.24
COG3307	O-antigen ligase	Cell wall/membrane/envelope biogenesis [M]	0.62
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.62
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.62
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.62
COG2186	DNA-binding transcriptional regulator, FadR family	Transcription [K]	0.62
COG2188	DNA-binding transcriptional regulator, GntR family	Transcription [K]	0.62
COG2378	Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains	Transcription [K]	0.62
COG2524	Predicted transcriptional regulator, contains C-terminal CBS domains	Transcription [K]	0.62
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.62
COG1815	Flagellar basal body rod protein FlgB	Cell motility [N]	0.62
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.62
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.62
COG3534	Alpha-L-arabinofuranosidase	Carbohydrate transport and metabolism [G]	0.62
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.62
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.62
COG4786	Flagellar basal body rod protein FlgG	Cell motility [N]	0.62
COG4787	Flagellar basal body rod protein FlgF	Cell motility [N]	0.62
COG1414	DNA-binding transcriptional regulator, IclR family	Transcription [K]	0.62
COG0108	3,4-dihydroxy-2-butanone 4-phosphate synthase	Coenzyme transport and metabolism [H]	0.62
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.62
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.62
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	0.62
COG0640	DNA-binding transcriptional regulator, ArsR family	Transcription [K]	0.62
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	0.62
COG1256	Flagellar hook-associated protein FlgK	Cell motility [N]	0.62
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	0.62
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.62
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.62
COG1558	Flagellar basal body rod protein FlgC	Cell motility [N]	0.62
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	0.62
COG1725	DNA-binding transcriptional regulator YhcF, GntR family	Transcription [K]	0.62
COG1749	Flagellar hook protein FlgE	Cell motility [N]	0.62
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.62
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.62
COG1959	DNA-binding transcriptional regulator, IscR family	Transcription [K]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.11 %
Unclassified	root	N/A	37.89 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.11 %
Unclassified	root	N/A	37.89 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.11 %
Unclassified	root	N/A	37.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.60 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.48 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2.48 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.62 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.62 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.18 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	8.70 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	1.86 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.62 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.62 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.62 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.62 %
Zetaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	8.07 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	2.48 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	1.86 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.62 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.62 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.62 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.62 %
unclassified Zetaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	6.21 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2.48 %
unclassified Clostridia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia	1.86 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.24 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.62 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.62 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.62 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.62 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.62 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.62 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	0.62 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Candidatus Sulfopaludibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter	3.73 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	2.48 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1.86 %
Paludibaculum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum	0.62 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.62 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.62 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.62 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.62 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.62 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	0.62 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	0.62 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.62 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.62 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
unclassified Candidatus Sulfopaludibacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter	3.73 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	2.48 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1.86 %
unclassified Acidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium	0.62 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.62 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.62 %
Desulfatirhabdium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium	0.62 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.62 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.62 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.62 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.62 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.62 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1.86 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.24 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1.24 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1.24 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.62 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.62 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	0.62 %
Desulfatirhabdium butyrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	0.62 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.62 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.62 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.62 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.62 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.62 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.62 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.62 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.89 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8.70 %
Clostridia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	1.86 %
Candidatus Sulfopaludibacter sp. SbA4	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	1.24 %
Candidatus Sulfopaludibacter sp. SbA6	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	1.24 %
Candidatus Sulfopaludibacter sp. SbA3	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	1.24 %
Streptomyces sp. MZ04	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. MZ04	0.62 %
Acidobacterium sp. S8	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	0.62 %
Candidatus Solibacter usitatus Ellin6076	isolate	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	0.62 %
Desulfatirhabdium butyrativorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	0.62 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	0.62 %
Paludibaculum fermentans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	0.62 %
Edaphobacter aggregans	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	0.62 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	0.62 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.62 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.62 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.62 %
Granulicella	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	0.62 %
Acidobacteriia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	0.62 %
Zetaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	0.62 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.62 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY02GXM6Q	Not Available	558	Open in IMG/M
3300001356\|JGI12269J14319_10204264	Not Available	774	Open in IMG/M
3300002568\|C688J35102_120852823	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter aggregans	1827	Open in IMG/M
3300004114\|Ga0062593_101098616	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300004156\|Ga0062589_100266513	All Organisms → cellular organisms → Bacteria	1297	Open in IMG/M
3300005354\|Ga0070675_101444596	All Organisms → cellular organisms → Bacteria	634	Open in IMG/M
3300005364\|Ga0070673_101707819	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300005434\|Ga0070709_10542410	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus → Candidatus Solibacter usitatus Ellin6076	889	Open in IMG/M
3300005440\|Ga0070705_100195492	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300005504\|Ga0074230_1000115	Not Available	538	Open in IMG/M
3300005538\|Ga0070731_10124960	All Organisms → cellular organisms → Bacteria	1705	Open in IMG/M
3300005602\|Ga0070762_10062657	All Organisms → cellular organisms → Bacteria	2075	Open in IMG/M
3300005844\|Ga0068862_101536272	Not Available	672	Open in IMG/M
3300006052\|Ga0075029_100054363	All Organisms → cellular organisms → Bacteria	2324	Open in IMG/M
3300006057\|Ga0075026_100069826	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300006172\|Ga0075018_10588506	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300006237\|Ga0097621_100745869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	904	Open in IMG/M
3300006354\|Ga0075021_10072505	All Organisms → cellular organisms → Bacteria	2016	Open in IMG/M
3300006358\|Ga0068871_100460897	All Organisms → cellular organisms → Bacteria	1141	Open in IMG/M
3300006640\|Ga0075527_10230067	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300006893\|Ga0073928_10250657	All Organisms → cellular organisms → Bacteria → Acidobacteria	1354	Open in IMG/M
3300009029\|Ga0066793_10134474	Not Available	1442	Open in IMG/M
3300009088\|Ga0099830_10802027	Not Available	777	Open in IMG/M
3300009090\|Ga0099827_10064941	All Organisms → cellular organisms → Bacteria	2797	Open in IMG/M
3300009101\|Ga0105247_11544607	Not Available	543	Open in IMG/M
3300009521\|Ga0116222_1079014	Not Available	1420	Open in IMG/M
3300009524\|Ga0116225_1204232	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	892	Open in IMG/M
3300009524\|Ga0116225_1564237	Not Available	504	Open in IMG/M
3300009632\|Ga0116102_1112716	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	773	Open in IMG/M
3300009665\|Ga0116135_1324437	Not Available	612	Open in IMG/M
3300009665\|Ga0116135_1501516	Not Available	503	Open in IMG/M
3300009700\|Ga0116217_10189022	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300009762\|Ga0116130_1225194	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	595	Open in IMG/M
3300009824\|Ga0116219_10362098	All Organisms → cellular organisms → Bacteria	812	Open in IMG/M
3300010339\|Ga0074046_10706277	Not Available	592	Open in IMG/M
3300010359\|Ga0126376_10541083	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1088	Open in IMG/M
3300010359\|Ga0126376_13091394	Not Available	515	Open in IMG/M
3300010366\|Ga0126379_10348244	All Organisms → cellular organisms → Bacteria	1511	Open in IMG/M
3300010366\|Ga0126379_11949650	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010375\|Ga0105239_12803763	Not Available	569	Open in IMG/M
3300010376\|Ga0126381_101071201	Not Available	1164	Open in IMG/M
3300010379\|Ga0136449_103592531	All Organisms → cellular organisms → Bacteria → Acidobacteria	588	Open in IMG/M
3300010398\|Ga0126383_13265420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. MZ04	530	Open in IMG/M
3300012096\|Ga0137389_11483143	Not Available	574	Open in IMG/M
3300012189\|Ga0137388_10570242	Not Available	1052	Open in IMG/M
3300012212\|Ga0150985_109255588	All Organisms → cellular organisms → Bacteria	2540	Open in IMG/M
3300012212\|Ga0150985_118790158	Not Available	1099	Open in IMG/M
3300012349\|Ga0137387_11043572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	585	Open in IMG/M
3300012361\|Ga0137360_10908810	Not Available	759	Open in IMG/M
3300012469\|Ga0150984_110925949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1785	Open in IMG/M
3300012903\|Ga0157289_10059676	Not Available	992	Open in IMG/M
3300012971\|Ga0126369_10974592	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	935	Open in IMG/M
3300013308\|Ga0157375_11631962	Not Available	763	Open in IMG/M
3300014167\|Ga0181528_10239564	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300014199\|Ga0181535_10854187	Not Available	514	Open in IMG/M
3300014489\|Ga0182018_10001338	All Organisms → cellular organisms → Bacteria	28332	Open in IMG/M
3300014491\|Ga0182014_10041736	All Organisms → cellular organisms → Bacteria	3309	Open in IMG/M
3300014493\|Ga0182016_10521416	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300014494\|Ga0182017_10217343	Not Available	1216	Open in IMG/M
3300014495\|Ga0182015_10841656	Not Available	576	Open in IMG/M
3300014501\|Ga0182024_10432539	All Organisms → cellular organisms → Bacteria	1693	Open in IMG/M
3300014638\|Ga0181536_10221284	Not Available	926	Open in IMG/M
3300014654\|Ga0181525_10031579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	3154	Open in IMG/M
3300014658\|Ga0181519_10781205	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300014839\|Ga0182027_11116208	Not Available	799	Open in IMG/M
3300015197\|Ga0167638_1095173	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	576	Open in IMG/M
3300015241\|Ga0137418_10403688	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1114	Open in IMG/M
3300016294\|Ga0182041_10429415	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → Desulfatirhabdium → Desulfatirhabdium butyrativorans	1131	Open in IMG/M
3300016422\|Ga0182039_10174154	All Organisms → cellular organisms → Bacteria	1692	Open in IMG/M
3300016445\|Ga0182038_11447501	Not Available	616	Open in IMG/M
3300017787\|Ga0183260_10083948	All Organisms → cellular organisms → Bacteria → Acidobacteria	2322	Open in IMG/M
3300017935\|Ga0187848_10433253	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300017946\|Ga0187879_10781257	Not Available	533	Open in IMG/M
3300017948\|Ga0187847_10149122	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1279	Open in IMG/M
3300017972\|Ga0187781_10401214	Not Available	979	Open in IMG/M
3300017975\|Ga0187782_10985205	Not Available	655	Open in IMG/M
3300017988\|Ga0181520_10597263	Not Available	766	Open in IMG/M
3300017988\|Ga0181520_10897238	All Organisms → cellular organisms → Bacteria	592	Open in IMG/M
3300018009\|Ga0187884_10201759	All Organisms → cellular organisms → Bacteria → Acidobacteria	820	Open in IMG/M
3300018014\|Ga0187860_1406631	Not Available	509	Open in IMG/M
3300018034\|Ga0187863_10504443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	677	Open in IMG/M
3300018038\|Ga0187855_10008205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → Paludibaculum → Paludibaculum fermentans	7181	Open in IMG/M
3300018038\|Ga0187855_10363011	Not Available	845	Open in IMG/M
3300018038\|Ga0187855_10385641	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300018038\|Ga0187855_10520653	All Organisms → cellular organisms → Bacteria	693	Open in IMG/M
3300018038\|Ga0187855_10580357	Not Available	653	Open in IMG/M
3300018047\|Ga0187859_10341019	Not Available	816	Open in IMG/M
3300018047\|Ga0187859_10598306	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300018081\|Ga0184625_10207106	Not Available	1028	Open in IMG/M
3300018086\|Ga0187769_11028850	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300018422\|Ga0190265_11627463	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300018468\|Ga0066662_10146966	Not Available	1775	Open in IMG/M
3300018468\|Ga0066662_12103014	Not Available	592	Open in IMG/M
3300019356\|Ga0173481_10680341	Not Available	553	Open in IMG/M
3300020579\|Ga0210407_11021818	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → unclassified Acidobacterium → Acidobacterium sp. S8	630	Open in IMG/M
3300020583\|Ga0210401_10228813	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	1718	Open in IMG/M
3300021168\|Ga0210406_10382587	All Organisms → cellular organisms → Bacteria	1130	Open in IMG/M
3300021402\|Ga0210385_10824188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → unclassified Clostridia → Clostridia bacterium	712	Open in IMG/M
3300021477\|Ga0210398_10580516	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300021479\|Ga0210410_10444051	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1161	Open in IMG/M
3300021560\|Ga0126371_11130526	All Organisms → cellular organisms → Bacteria	922	Open in IMG/M
3300021560\|Ga0126371_13880278	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300022522\|Ga0242659_1119181	Not Available	538	Open in IMG/M
3300022524\|Ga0224534_1017992	All Organisms → cellular organisms → Bacteria	1935	Open in IMG/M
3300022727\|Ga0224567_100271	Not Available	1144	Open in IMG/M
3300023090\|Ga0224558_1003278	All Organisms → cellular organisms → Bacteria	13653	Open in IMG/M
3300023101\|Ga0224557_1011371	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	5266	Open in IMG/M
3300023101\|Ga0224557_1032996	All Organisms → cellular organisms → Bacteria	2595	Open in IMG/M
3300023547\|Ga0247554_101419	All Organisms → cellular organisms → Bacteria	824	Open in IMG/M
3300024330\|Ga0137417_1502149	All Organisms → cellular organisms → Bacteria	4379	Open in IMG/M
3300025569\|Ga0210073_1015841	All Organisms → cellular organisms → Bacteria	1471	Open in IMG/M
3300025907\|Ga0207645_10325027	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300025926\|Ga0207659_10560290	All Organisms → cellular organisms → Bacteria → Acidobacteria	972	Open in IMG/M
3300025929\|Ga0207664_11476762	All Organisms → cellular organisms → Bacteria	601	Open in IMG/M
3300027619\|Ga0209330_1156059	Not Available	514	Open in IMG/M
3300027825\|Ga0209039_10269879	Not Available	675	Open in IMG/M
3300027826\|Ga0209060_10517121	Not Available	541	Open in IMG/M
3300027840\|Ga0209683_10286960	All Organisms → cellular organisms → Bacteria → Proteobacteria → Zetaproteobacteria → unclassified Zetaproteobacteria → Zetaproteobacteria bacterium	757	Open in IMG/M
3300027854\|Ga0209517_10629411	Not Available	563	Open in IMG/M
3300027879\|Ga0209169_10300199	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	844	Open in IMG/M
3300027905\|Ga0209415_10005525	All Organisms → cellular organisms → Bacteria → Acidobacteria	22674	Open in IMG/M
3300027905\|Ga0209415_10016722	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	11750	Open in IMG/M
3300027905\|Ga0209415_10986276	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA3	562	Open in IMG/M
(restricted) 3300028043\|Ga0233417_10594674	Not Available	526	Open in IMG/M
3300028574\|Ga0302153_10109185	Not Available	942	Open in IMG/M
3300029913\|Ga0311362_11263623	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	542	Open in IMG/M
3300029999\|Ga0311339_10655539	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella	1035	Open in IMG/M
3300030503\|Ga0311370_12320571	Not Available	522	Open in IMG/M
3300030524\|Ga0311357_10921720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium	775	Open in IMG/M
3300030618\|Ga0311354_10214054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2050	Open in IMG/M
3300031231\|Ga0170824_109672952	Not Available	643	Open in IMG/M
3300031236\|Ga0302324_100558158	All Organisms → cellular organisms → Bacteria	1654	Open in IMG/M
3300031525\|Ga0302326_11617876	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300031708\|Ga0310686_119792867	Not Available	504	Open in IMG/M
3300031708\|Ga0310686_119839151	Not Available	906	Open in IMG/M
3300031753\|Ga0307477_10462146	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	865	Open in IMG/M
3300032160\|Ga0311301_10098863	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	5732	Open in IMG/M
3300032160\|Ga0311301_11600392	Not Available	793	Open in IMG/M
3300032205\|Ga0307472_100282458	All Organisms → cellular organisms → Bacteria	1323	Open in IMG/M
3300032261\|Ga0306920_100491213	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300032516\|Ga0315273_10537876	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1559	Open in IMG/M
3300032829\|Ga0335070_11556638	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300032893\|Ga0335069_12429293	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA6	544	Open in IMG/M
3300032897\|Ga0335071_10026079	All Organisms → cellular organisms → Bacteria	5831	Open in IMG/M
3300032897\|Ga0335071_11980668	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Sulfopaludibacter → unclassified Candidatus Sulfopaludibacter → Candidatus Sulfopaludibacter sp. SbA4	526	Open in IMG/M
3300032954\|Ga0335083_10173136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2007	Open in IMG/M
3300033158\|Ga0335077_12163480	Not Available	512	Open in IMG/M
3300033402\|Ga0326728_10327622	All Organisms → cellular organisms → Bacteria	1370	Open in IMG/M
3300033405\|Ga0326727_10497077	Not Available	1063	Open in IMG/M
3300033405\|Ga0326727_10827675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	708	Open in IMG/M
3300033482\|Ga0316627_102160603	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300033887\|Ga0334790_098265	Not Available	955	Open in IMG/M
3300034124\|Ga0370483_0148884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300034124\|Ga0370483_0164385	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300034147\|Ga0364925_0062204	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1283	Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.06%
Host-Associated	Host-Associated	9.32%
Engineered	Engineered	0.62%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	67.70%
Aquatic	Environmental → Aquatic	22.36%
Plants	Host-Associated → Plants	9.32%
Solid Waste	Engineered → Solid Waste	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.52%
Freshwater	Environmental → Aquatic → Freshwater	18.01%
Peat	Environmental → Terrestrial → Peat	9.94%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.97%
Sediment	Environmental → Aquatic → Sediment	3.11%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.11%
Roots	Host-Associated → Plants → Roots	1.24%
Marine	Environmental → Aquatic → Marine	0.62%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.62%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.62%
Floodplain	Environmental → Terrestrial → Floodplain	0.62%
Wood	Engineered → Solid Waste → Wood	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.13%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	16.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	13.04%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	9.94%
Loam	Environmental → Terrestrial → Soil → Loam	4.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.11%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.86%
Lake	Environmental → Aquatic → Freshwater → Lake	1.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.24%
Ice	Environmental → Aquatic → Freshwater → Ice	0.62%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.62%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.62%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.62%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.62%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.62%
Composting	Engineered → Solid Waste → Wood → Composting	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.22%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	13.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.18%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	9.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.07%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	4.97%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.11%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.11%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	1.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.24%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.24%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.24%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.62%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.62%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.62%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.62%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.62%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.62%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.62%
Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor	0.62%

Habitat	Taxonomy	Distribution
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	8.07%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	8.07%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.59%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.97%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.73%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.73%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	3.11%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	2.48%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.86%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.86%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.24%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.24%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.24%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.24%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	1.24%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	1.24%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	1.24%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.24%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.24%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.24%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.24%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.24%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.62%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.62%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.62%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.62%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.62%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.62%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.62%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.62%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	0.62%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.62%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.62%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.62%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.62%
Poplar Biomass Bioreactor	Engineered → Solid Waste → Wood → Composting → Bioreactor → Poplar Biomass Bioreactor	0.62%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005504	Poplar biomass bioreactor microbial communities from Brookhaven National Lab, NY - total biomass decay community	Engineered	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006640	Arctic peat soil microbial communities from the Barrow Environmental Observatory site, Barrow, Alaska, USA - NGEE Permafrost305-11B	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009029	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Permafrost soil replicate 1 DNA2013-189	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009524	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_c_BC metaG	Environmental	Open in IMG/M
3300009632	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40	Environmental	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014658	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_10_metaG	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015197	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G6B, Proglacial plain, adjacent to northern proglacial tributary)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018014	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_40	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022522	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022524	Peat soil microbial communities from Stordalen Mire, Sweden - 717 E1 20-24	Environmental	Open in IMG/M
3300022727	Spruce litter microbial communities from Bohemian Forest, Czech Republic ? CLU3	Environmental	Open in IMG/M
3300023090	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 20-24	Environmental	Open in IMG/M
3300023101	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S3 10-14	Environmental	Open in IMG/M
3300023547	Metatranscriptome of spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZA4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300024330	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027840	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300028043 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0.5_MG	Environmental	Open in IMG/M
3300028574	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N2_2	Environmental	Open in IMG/M
3300029913	III_Bog_N3 coassembly	Environmental	Open in IMG/M
3300029999	I_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030618	II_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031236	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032516	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_0	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033887	Peat soil microbial communities from Stordalen Mire, Sweden - 713 P-1-X1	Environmental	Open in IMG/M
3300034124	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040825

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_03443380	2170459010	Grass Soil	MAMFTANDAVLPFPFRQALDRVDEQLDLLIFGAFPL
JGI12269J14319_102042642	3300001356	Peatlands Soil	RVFRPAVAMFTGNDAVLPFPLRASLDRVDTQLDELIYQAFPQIKVA*
C688J35102_1208528231	3300002568	Soil	DARVFRPAMAMFTANDAVLPFPLRRALNRVDDQLDKLIYNAFPLQKAS*
Ga0062593_1010986162	3300004114	Soil	MAMFTANDAVLPFPLRQALDRVDTQLDTLIYDAFPLPKAS*
Ga0062589_1002665133	3300004156	Soil	VFRPAVAMFTSNDAVLPFPLRASLDRVDAQLDELIYQAFPQAKAS*
Ga0070675_1014445961	3300005354	Miscanthus Rhizosphere	RVFRPAVAMFTGNDAVLPFPLRASLDRVDTQLDELIYQAFPQAKAA*
Ga0070673_1017078191	3300005364	Switchgrass Rhizosphere	PAMGMFTANDAVLPFPLRQALDRVDKQLDHLIYDAVPLPKAG*
Ga0070709_105424101	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	RPAIAMFTANDAVLPFPLRRALNRVDDQLDELIYDAFPLQNAS*
Ga0070705_1001954921	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MFTGNDAVLPFPLRSALDRADAQLDVLIYQAFPLPKASEE
Ga0074230_10001151	3300005504	Poplar Biomass Bioreactor	ANDAVLPFPLRQALDRVDAQLDVLIYDAFPLPKAS*
Ga0070731_101249603	3300005538	Surface Soil	MEGGAAVFRPAMAMLTANDAVRPFPLKRALDSVDAQLKALIYEAFPLPKAA*
Ga0070762_100626571	3300005602	Soil	PAMAMFTASDAVLPFPLRQALDRVDTQLDLLIYDAFPLPKAS*
Ga0068862_1015362722	3300005844	Switchgrass Rhizosphere	ANDAVLPFPLRQALNRVDKQLDRLIYDAVPLPKAG*
Ga0075029_1000543632	3300006052	Watersheds	MAMFTANDAVLPFPLRQALDRTDAQLDLLIYDAFPLSKAS*
Ga0075026_1000698263	3300006057	Watersheds	VFRPALAMFTANDAVLPFPLRASLNRVDQHMDELIYQAFPQAKVA*
Ga0075018_105885061	3300006172	Watersheds	VFCPAVAAFTSDDAVLTFPLRARFDAQLDELIYRAFLQTKAS*
Ga0097621_1007458692	3300006237	Miscanthus Rhizosphere	MAMLTANDVVRPFPLRQALDHVDKELDRLIYDVVPLQKAG*
Ga0075021_100725052	3300006354	Watersheds	VFRPAVAAFTSDDAVLTFPLRACFDAQLDELIYRAFLQTKAS*
Ga0068871_1004608974	3300006358	Miscanthus Rhizosphere	FTANDAVLPFPLRQALERVDKQLDRLIYDAVPLQKAG*
Ga0075527_102300671	3300006640	Arctic Peat Soil	MFTANDAVLPFPLRQSLDRVDSQLDVLIYEAFPLPKTG*
Ga0073928_102506571	3300006893	Iron-Sulfur Acid Spring	SKDATLPFPLRKALDRVDAQLDSLVYEGFPMAKAS*
Ga0066793_101344742	3300009029	Prmafrost Soil	MAMFTANDAVLPFPLRRALDRTDAQLDTLIYQAFPVPKAV*
Ga0099830_108020271	3300009088	Vadose Zone Soil	MAMFTGNDAVLPFPLRSALDRADAQLDVLIYQAFPLPKAV*
Ga0099827_100649414	3300009090	Vadose Zone Soil	AMSMFTGNDAVLPFPLRKALDRVDAQLDFLIYEAFPIAKAS*
Ga0105247_115446071	3300009101	Switchgrass Rhizosphere	MAMFTANDAVLPFPLKRALDRVDAQLDALIYEAFPLPKAG*
Ga0116222_10790142	3300009521	Peatlands Soil	AMFTGNDAVLPFPLRASLDRVDTQLDELIYQAFPQIKVA*
Ga0116225_12042321	3300009524	Peatlands Soil	MAMFTANDAVLPFTPRQALDRTDAQLDLLIYQAFPL*
Ga0116225_15642371	3300009524	Peatlands Soil	FRPAMAMFTANDAVLPFPLRQSLDRVDSQLDALIYEAFPLPKTG*
Ga0116102_11127161	3300009632	Peatland	MATITANDAVLPFPLRQALDRVDEQLDLLIFNAFPAQKAGEKAA*
Ga0116135_13244371	3300009665	Peatland	RVFRPAIAMFTSNDAVLPFPLRASLNRVDSQLDELIYQAFPQAKAS*
Ga0116135_15015162	3300009665	Peatland	MFTANDAVLPFPLKRAPDQVDAQLDALIYEALPLPKAVENLTLLDRSQLH*
Ga0116217_101890222	3300009700	Peatlands Soil	MAFRPAMAMFTANDVVLPFPLRQALNRVDTQLVLLIYEAFPLPKAN*
Ga0116130_12251942	3300009762	Peatland	FRPAMAMFTATDAVLPFPLRQALDRVDAQLDHLIYDAFPLPKAG*
Ga0116219_103620982	3300009824	Peatlands Soil	VLPPARAMFTAQDAVLPFPLRSALDRVDAQLDELIYQAFPAKKAS*
Ga0074046_107062771	3300010339	Bog Forest Soil	PAMAMFTANDAVLPFPLRQSLDRVDSQLDVLIYQSDHK*
Ga0126376_105410832	3300010359	Tropical Forest Soil	MFAGNDAVLPFQLRASLDCVGAQLDALIHEAFPDAKAS*
Ga0126376_130913941	3300010359	Tropical Forest Soil	FTANDAVLPFPLRQSLDRVDAELDLLIYDAFPLLKAG*
Ga0126379_103482443	3300010366	Tropical Forest Soil	MFAGNDAVLPFQLRASLDCADAQLDALIYEAFPDAKAS*
Ga0126379_119496501	3300010366	Tropical Forest Soil	RPAMATFTANDAVLPFPLRPALDHVDTQLDQLIYEAFPLPKAS*
Ga0105239_128037632	3300010375	Corn Rhizosphere	FTANDAVLPFPLRQSLDRVDSQLDVLIYEAFPLPKTG*
Ga0126381_1010712012	3300010376	Tropical Forest Soil	NDAVPPFPLRQALDRVDAQMDLLIYDAFPLPKAS*
Ga0136449_1035925312	3300010379	Peatlands Soil	MAMFTINDAVLQFPLRQALDRVDERLVPLIFDAFPLCESQVKT*
Ga0126383_132654202	3300010398	Tropical Forest Soil	MATFTANDAVLPFPLRQALDRVDSQLDQLIYQAFPLPKAG*
Ga0137389_114831431	3300012096	Vadose Zone Soil	FTGNDAVLPFPLRSALDRADAQLDIVIYEACPLPKAV*
Ga0137388_105702422	3300012189	Vadose Zone Soil	MFTSNDAVLPFPLRASLDRVDAQMEQLIYEAFPQAKAS*
Ga0150985_1092555883	3300012212	Avena Fatua Rhizosphere	VFRPAVATFTGNDAVLPFPLRTSLNRVDAQLDQLIHDAFPHAKAS*
Ga0150985_1187901581	3300012212	Avena Fatua Rhizosphere	VFRPAVATFTGNDTVLPFPLRASLNRVDAQLDQLIYHAFPHAKAS*
Ga0137387_110435722	3300012349	Vadose Zone Soil	VFRPAIAMFTANDAVLPFPLRQALDRTDAQLDLLIYEAFQLQKAG*
Ga0137360_109088102	3300012361	Vadose Zone Soil	AMAMFTANDAVLPFPLRQALDRTDAQLDLLINDAFPLPKGS*
Ga0150984_1109259493	3300012469	Avena Fatua Rhizosphere	VFRPAVATFTGNGAVLPFPLRASLNRVDAQLDELIYNAFPKAKAS*
Ga0157289_100596763	3300012903	Soil	MFTSNDAVLPFPLRASLDRVDAQLDELIYQAFPQAKAS*
Ga0126369_109745921	3300012971	Tropical Forest Soil	EARVFRPAIAMFTGNDAVLPFPLRASLDRVDAQLDELIYQAFPQIKAA*
Ga0157375_116319622	3300013308	Miscanthus Rhizosphere	NDAVLPFPLRQSLDRVDSQLDVLIYEAFPLPKTG*
Ga0181528_102395642	3300014167	Bog	MFTSNDAVLPFPLRASLNRVDAQLDKLIYEAFPQVKVA*
Ga0181535_108541872	3300014199	Bog	VFRSAVAIFTSNDAGLPFPLRAFLNRVDAQLNELIYGAFPQGKPS*
Ga0182018_100013389	3300014489	Palsa	MFTGNDAVLPFPLRASLDRVEAQMDELIYEAFPQATAS*
Ga0182014_100417361	3300014491	Bog	RVFRPAMAMFTANDAVLPFPLRQALDRVDAQLDALIYEAFPLPKAS*
Ga0182016_105214163	3300014493	Bog	VAMFTGNDAVLPFPLRASLDRVDAQLDELIYEAFPQTKAS*
Ga0182017_102173433	3300014494	Fen	RVFRPAMAMFTANDAVLPFPLRQALDRVDAQMDILIYEAFPLPKAS*
Ga0182015_108416562	3300014495	Palsa	MAMLTSNDAVVPFPLRASLDRVDAQLDELIYQAFPQ
Ga0182024_104325391	3300014501	Permafrost	ARVFRPAVAMFTGNDAVLPFPLRASLDRVDAQLDELIYEAFPQTKAS*
Ga0181536_102212842	3300014638	Bog	DAVLPFPLRQALDRVDEQLDLLIFNAFPAQKAGEKAA*
Ga0181525_100315795	3300014654	Bog	NDAVLPFPLRASPDRVDAQLDELIYQAFPQIKAA*
Ga0181519_107812052	3300014658	Bog	MFTGNDAVLPFPLRASLDRVDAQLDELIYEAFPQVKVA*
Ga0182027_111162082	3300014839	Fen	AMFTANDAVLPFPLRQALDRVDTQMDLLIYEAFPLPKAS*
Ga0167638_10951732	3300015197	Glacier Forefield Soil	MFTANDAVLPFPLRHALESVDAQLDLLIYEAFPLPKAS*
Ga0137418_104036882	3300015241	Vadose Zone Soil	MFTANDAVLPFPLRQALDRVDSQLDLLIYDAFPLPKAS*
Ga0132258_135474711	3300015371	Arabidopsis Rhizosphere	RPAIAMFTGTDAVLPFQLRASLDCADAQLDALIYEAFPDAKPCEPHYVL*
Ga0132255_1007811362	3300015374	Arabidopsis Rhizosphere	MFTGTDAVLPFQLRASLDCADAQLDALIYEAFPDAKPCEPHYVL*
Ga0182041_104294153	3300016294	Soil	AMFTANDAVLPFPLRQALDRVDSQLDRLLYDAFPLPKAG
Ga0182032_111490441	3300016357	Soil	VFRPAIAVFAGSDAVLPFQLRASLDCAAAQLEALIYEAFPDAKAS
Ga0182034_111810722	3300016371	Soil	TPGRRVFRPAIAVFAGSDAVLPFQLRASLDCAAAQLEALIYEAFPDAKAS
Ga0182039_101741541	3300016422	Soil	GSDAVLPFQLRASLDCAAAQLEALIYEAFPDAKAS
Ga0182038_114475012	3300016445	Soil	SMFTSNDAVLPFPLRQALDRVDAQLDLLIYDAFPLPKAG
Ga0183260_100839483	3300017787	Polar Desert Sand	VFRPAIAMFTSNDAVLPFPLRASLNRVDAQLDPLLYEAFPQAKAS
Ga0187848_104332532	3300017935	Peatland	FTSNDAVLPFPLRQALDRTDAQLDQLIYQAFPLPKAS
Ga0187879_107812572	3300017946	Peatland	MAMFTGNDAVLPFPLRNALDRADAQLDALIYQAFPFPKAV
Ga0187847_101491223	3300017948	Peatland	AIAMFTSNDAVLPFPLRASLNRVDSQLDELIYQAFPQAKAS
Ga0187781_104012142	3300017972	Tropical Peatland	MAMFTANDAVLPFPLRQALDRVDAQLDLLIYDAFPLPKAS
Ga0187782_109852052	3300017975	Tropical Peatland	MFTANDAVLPFPLRQALDRVDAQLDLLIYDAFPLPKAS
Ga0181520_105972632	3300017988	Bog	MAMFTANDAVLPFPLRQALDRTDAQLDQLIYDAFPPQTAA
Ga0181520_108972381	3300017988	Bog	AMAMFTANDAVLPFPLKRALDRVDAQLDTLIYEAFPLPKAG
Ga0187884_102017592	3300018009	Peatland	MAMFTTNDAVLPFPLRPALDRVDAQLDQLIYEAFPLPKAC
Ga0187860_14066312	3300018014	Peatland	FRPAMAMFTANDAVLPFPLRQSLDRVDAQLDLLIYDAFPLPKAG
Ga0187863_105044431	3300018034	Peatland	MALFTANDAVLPFPLRRALDRVAAQLNAPIYEAFPLPKTG
Ga0187855_100082057	3300018038	Peatland	AMAMFTANDAVLPFPLRRALDSVDAQLDTLIYEAFPLPKASQKLDTFR
Ga0187855_103630111	3300018038	Peatland	AMAMFTANDAVLPFPLRRALDSVDAQLDTLIYEAFPLPKAS
Ga0187855_103856412	3300018038	Peatland	MAMFIGNDAVLPFPLRQALDRVDTQLDLLIYDAFPLPKASRKT
Ga0187855_105206531	3300018038	Peatland	LEAHVFRLAMAMFTANDAVLPFPLLQALDRADKQLDDLIYDEFPLPKAS
Ga0187855_105803572	3300018038	Peatland	VFRSAVAIFTSNDAGLPFPLRAFLNRVDAQLNELIYGAFPQGKPS
Ga0187859_103410192	3300018047	Peatland	MAMFTGNDAVLPFPLRNALDRADAQLDALIYQAFPFPEAV
Ga0187859_105983062	3300018047	Peatland	AMFTGNDAVLPFPLRASLDRVDAQMDELIYEAFPQAKAS
Ga0184625_102071061	3300018081	Groundwater Sediment	MFTGNDAVLPFPLRASLERVDAQLDELIYDAFPQAKAS
Ga0187769_110288501	3300018086	Tropical Peatland	MFTATDAVLPFPLRQALDRVDTQLDYLIYDAFPPSQAA
Ga0190265_116274632	3300018422	Soil	VFRPAIAIFTSNDAVLPFPLRASLNRVDAQLDQLIYEAFPQVKAS
Ga0066662_101469661	3300018468	Grasslands Soil	ARVFRPAMAMFTANDAVLPFPLRRALNRVDDQLDKLIYNAFPLQKAS
Ga0066662_121030142	3300018468	Grasslands Soil	GNDAVLPFPLRRALDRTDDQLDTLIYQAFPYAKAS
Ga0173481_106803411	3300019356	Soil	MFTSNDAVLPFPLRASLDRVDAQLDELIYQAFPQAKAS
Ga0210407_110218182	3300020579	Soil	MAMFTAKDAVLPFPLRQALDRTDAQLDLLIYDAFPLEKAG
Ga0210401_102288134	3300020583	Soil	MFTGNDAVLPFPLRSALDRADAQLDVLIYQAFPLP
Ga0210406_103825872	3300021168	Soil	MAMFTGNDAVLPFPLRSALDRADAQLDVLIYQAFPLPTAV
Ga0210385_108241881	3300021402	Soil	VFRPAVAMFTSNDAVLPFPLRASLDRVDAQLDELIYQAFPQAKAS
Ga0210398_105805162	3300021477	Soil	MFTGNDAVLPFPLRASLDRVDAQLDELIYEAFPQTKAS
Ga0210410_104440512	3300021479	Soil	VFRPAMAMFTATDAVLPFPLRQALDRTDAQLDLLIYDAFPLEKAG
Ga0126371_111305263	3300021560	Tropical Forest Soil	ATFTANHAVLPFPLRQALDRVDTQLDQLIYEAFPLPKAS
Ga0126371_138802781	3300021560	Tropical Forest Soil	SNDAVLPFPLRQALDRADAQLDLLIYDAFPLPKAG
Ga0242659_11191811	3300022522	Soil	TFTSNEAVLPFPLRASLNRVDNQLDELIYQAFPQTKAS
Ga0224534_10179921	3300022524	Soil	MAMFTANDAVLPFPLRQALDRVDAQLDALIYEAFPLPKAS
Ga0224567_1002711	3300022727	Plant Litter	ETRVFRPAFAMFTGNDAVLPFPLRASLNRVDAQLDQLIYQAFPQSMAS
Ga0224558_100327815	3300023090	Soil	AMFTANDAVLPFPLRQALDRVDAQLDALIYEAFPLPKAS
Ga0224557_10113715	3300023101	Soil	MFTGNDAVLPFPLRASLDRVEAQMDELIYEAFPQATAS
Ga0224557_10329961	3300023101	Soil	MFTGNDAVLPFPPRASLDRVNAQMGELIYEAFPQAKAS
Ga0247554_1014191	3300023547	Soil	MATFTATDAVLPFPLRQALDRVDQQLDLLIYEAFPLPKAG
Ga0137417_15021496	3300024330	Vadose Zone Soil	MAMFTPMTPFLPFPLRQALDRVDTQLDLLIYDAFPLPKAS
Ga0210073_10158413	3300025569	Natural And Restored Wetlands	RPAMAMFTTNDAVLPFPLRQALDRVDTQLDLLIYEAFPIPKAS
Ga0207645_103250272	3300025907	Miscanthus Rhizosphere	MFTANDAVLPFPLRQALDRVDKQLDHLIYDAVPLPKAG
Ga0207659_105602901	3300025926	Miscanthus Rhizosphere	ESRVFRPAVAMFTSNDAVLPFPLRASLDRVDSQLDELIYHAFPQAKAS
Ga0207664_114767622	3300025929	Agricultural Soil	VAMFTGNDAVLPFALRTSLDRVDAQLDELIYQAFPQIRAA
Ga0209330_11560591	3300027619	Forest Soil	MFTSNDTVAPFPLRVSLNRVDAQLGELIYRAFPQAKAS
Ga0209039_102698791	3300027825	Bog Forest Soil	PVFRPAMAMFTANDAVLPFPLRQSLDRVDSQLDVLIYEAFPLPKTG
Ga0209060_105171213	3300027826	Surface Soil	MAMFTGNDAVLPFPLRQALDRLDGQLDQLIYDAFPLPKAS
Ga0209683_102869602	3300027840	Wetland Sediment	MQRPFFGANDAVLPFPLRASLDRVDAQMDELIYTAFPQAKAS
Ga0209517_106294112	3300027854	Peatlands Soil	RVFRLAMALFTTNDAVLPFPLRPALDGVDTQLDLLIYEAFPLPKAS
Ga0209169_103001991	3300027879	Soil	MAMFTANDAVLPFPLRQALDRVDTQLDLLIYDAFPLEKAG
Ga0209415_1000552532	3300027905	Peatlands Soil	PAVAMFTGNDAVLPFPLRASLDRVDTQLDELIYQAFPQIKVA
Ga0209415_100167228	3300027905	Peatlands Soil	PAVAMFTGNDAVLPFPLRASLDRVDAQLDELIYQAFPQIKVA
Ga0209415_109862762	3300027905	Peatlands Soil	MAMFTANDAVLPFTPRQALDRTDAQLDLLIYQAFPL
(restricted) Ga0233417_105946741	3300028043	Sediment	ESRVFRPAVAMFTGNDAVLPFPLRASLDRVDAQMDELIYTAFPQAKAS
Ga0302153_101091853	3300028574	Bog	FTSNDAVLPFPLRRSLDSVDRQLDHLIDLAFPQTKAS
Ga0311362_112636231	3300029913	Bog	FRPAVAMFTSNDAVLPLPLRASLNRVDSQLDELIYQAFPQAKTSSKTLNKS
Ga0311339_106555391	3300029999	Palsa	AIATFTSNDAVLPFPLRASLKRVDNQLDQLIYQAFPQSKVA
Ga0311370_123205712	3300030503	Palsa	PAMAMFTANDAVLPFPLKRALDRVDAQLDTLIYEAFPLPKAS
Ga0311357_109217203	3300030524	Palsa	PAMAMFTSNDAVVPFPLRASLNRVDAQLDELIYRAFPQAKAS
Ga0311354_102140541	3300030618	Palsa	MFTGNHAVLPFFLRQALDRIDAQLDLLVYDAFPLPKTS
Ga0170824_1096729521	3300031231	Forest Soil	MAMITANDAVLPFPLRQALDRVDEQLDLLIYDAFPLEKAS
Ga0302324_1005581583	3300031236	Palsa	AMFTSNDAVVPFPLRASLNRVDAQLDELIYQAFPQAKAS
Ga0302326_116178761	3300031525	Palsa	MFTANDAVLPFPLRRALNRVDDQLDELIYDAFPLQKAS
Ga0310686_1197928672	3300031708	Soil	TSNDAVLPFPLRASLDRVDAQLDELIYQAFTSSKAS
Ga0310686_1198391512	3300031708	Soil	FRPAVAMFTSNDAVLPFPLRASLDRVDALDELIYQAFPSSKAS
Ga0307477_104621462	3300031753	Hardwood Forest Soil	MSMFTANDAVLPFPLRQALDRVDGQLDLLIYDAFPLPKAS
Ga0306925_102664523	3300031890	Soil	FRPAIAVFAGSDAVLPFQLRASLDCAAAQLEALIYEAFPDAKAS
Ga0310912_112269151	3300031941	Soil	VFRPAIAVFAGSDAVLPFQLRASLDCAAAQLEALIYEAFPDA
Ga0311301_100988631	3300032160	Peatlands Soil	MAFRPAMAMFTANDVVLPFPLRQALNRVDTQLVLLIYEAFPLPKAN
Ga0311301_116003923	3300032160	Peatlands Soil	TFTANDAVLPFPLRQALDGVDTQLDELIYEAFPLPKAS
Ga0307472_1002824582	3300032205	Hardwood Forest Soil	MAMFSGNDDVLPFPLRSALDRADAQLDVLIYQAFPLPTAV
Ga0306920_1004912131	3300032261	Soil	MFTGNDAVLPFPLRQALDRVDAQLDLLIYDAFPLPKAA
Ga0315273_105378763	3300032516	Sediment	RVFRSAMSMFTAHDAVLPFPLRQALDRVDAQLDTLIYGAFPLPKAS
Ga0335070_115566381	3300032829	Soil	FRPAMAMFTATDAVLPFPLRQALDRVDSQLDHLIYEAFPLPKAG
Ga0335069_124292932	3300032893	Soil	MAMSTASDAVLPFPLRQALDRVDTQLDVLIYDAFPLPKAS
Ga0335071_100260794	3300032897	Soil	MATFTANDAVLPFPLRRALDRVDSQLDQLIYDAFPLPKAG
Ga0335071_119806682	3300032897	Soil	TSNDAVLPFPLRASLDRVDAQLDELIYDAFPQAKAS
Ga0335083_101731361	3300032954	Soil	TANDAVLPFPLRQALDRVDTQLDHLIYDAFPLPKAG
Ga0335077_121634801	3300033158	Soil	TSNDAVLPFPLRASLHRVDAQLDHLVYQAFPQTKAA
Ga0326728_103276221	3300033402	Peat Soil	EARVFRPAVAMFTSNDAVLPFPLRASLNRVDAQLDELIYEAFPQAKAS
Ga0326727_104970771	3300033405	Peat Soil	PAMAMFTANDAVLPFPLRQALDRVDAQLDQLIYDAFPLPKAS
Ga0326727_108276751	3300033405	Peat Soil	VAIFTGNDAVLPLPLRASLDRVDAQMDELIYEAFPQTKAS
Ga0316627_1021606031	3300033482	Soil	TAHDAVLPFPLRQALDRVDAQLDTLIYGAFPLPKAS
Ga0334790_098265_696_818	3300033887	Soil	MAMFPSNDAVVPFPLRASLDRVDAQLDELIYQAFPQAKAS
Ga0370483_0148884_592_714	3300034124	Untreated Peat Soil	MAMFTSNDAVLPFPLRASLNRVDDQLDQLIYDAFPQLKAS
Ga0370483_0164385_265_381	3300034124	Untreated Peat Soil	MFTGNDAVLPFPLRASLDRVDAQMDELIYEAFPQTKAS
Ga0364925_0062204_1168_1281	3300034147	Sediment	FTGNDAVLPFPLRTSLNRVDAQLDELIYDAFPQAKAS

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign