Metagenome / Metatranscriptome Family F040725

Basic Information
Family ID	F040725
Family Type	Metagenome / Metatranscriptome
Number of Sequences	161
Average Sequence Length	66 residues
Representative Sequence	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKALPGALLVPLVAS
Number of Associated Samples	111
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	98.75 %
% of genes near scaffold ends (potentially truncated)	98.76 %
% of genes from short scaffolds (< 2000 bps)	93.17 %
Associated GOLD sequencing projects	105
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Bacteria (52.795 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (48.447 % of family members)
Environment Ontology (ENVO)	Unclassified (61.491 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (49.689 % of family members)

Multiple Sequence Alignments

Select alignment to view:

Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1JGI10216J12902_1135225431 2JGI10216J12902_1144075313 3Ga0062595_1011868532 4Ga0062388_1021030242 5Ga0066388_1021364841 6Ga0066388_1034114852 7Ga0066388_1062170941 8Ga0070733_101061393 9Ga0066903_1089083521 10Ga0070765_1022090302 11Ga0066665_114782231 12Ga0075425_1015274891 13Ga0075434_1024133041 14Ga0075426_100041321 15Ga0075436_1010397722 16Ga0075435_1003032164 17Ga0126374_117158151 18Ga0126384_120965822 19Ga0126373_113121062 20Ga0126373_127790881 21Ga0126370_117825191 22Ga0126370_118983962 23Ga0126376_116677301 24Ga0126376_118799562 25Ga0126372_128552192 26Ga0126378_101213951 27Ga0126378_114564661 28Ga0126377_132750351 29Ga0126381_1044438302 30Ga0126381_1047874121 31Ga0126383_113360102 32Ga0137419_102628371 33Ga0126369_106639993 34Ga0181524_102493311 35Ga0182036_117864951 36Ga0182035_116394271 37Ga0182032_108306381 38Ga0182032_114575802 39Ga0182040_108142952 40Ga0182037_102045781 41Ga0182037_120386182 42Ga0182039_107246252 43Ga0182039_121641591 44Ga0182038_101137314 45Ga0187820_11323471 46Ga0187809_102490271 47Ga0187779_107189722 48Ga0187779_108442722 49Ga0187783_105435581 50Ga0187781_102386621 51Ga0187780_104847062 52Ga0187874_102616701 53Ga0187861_102030111 54Ga0187890_108822521 55Ga0187772_109105962 56Ga0210403_110582511 57Ga0213873_102496941 58Ga0210402_118229691 59Ga0126371_102814201 60Ga0126371_113980731 61Ga0126371_118862722 62Ga0126371_126456842 63Ga0209073_101824921 64Ga0209624_101955403 65Ga0222749_107153551 66Ga0311369_114318721 67Ga0311355_113885471 68Ga0318534_100599183 69Ga0318534_106129202 70Ga0318541_101203411 71Ga0318541_103041891 72Ga0318538_101706551 73Ga0318538_105672202 74Ga0318538_106115061 75Ga0318573_100881741 76Ga0318573_103056622 77Ga0318573_108022891 78Ga0318515_104733212 79Ga0318561_102426442 80Ga0318574_109389262 81Ga0318572_101014082 82Ga0318572_106399541 83Ga0318560_103749722 84Ga0318496_101729672 85Ga0306917_108518251 86Ga0306917_110615031 87Ga0306917_110978441 88Ga0318493_100366224 89Ga0318493_105075032 90Ga0318500_101681401 91Ga0318502_102354232 92Ga0318492_100843781 93Ga0318492_100959052 94Ga0318492_103996921 95Ga0318494_102678072 96Ga0318494_107432471 97Ga0318494_107476351 98Ga0318535_101497401 99Ga0318535_102239232 100Ga0318554_102473692 101Ga0318509_101063023 102Ga0318521_104045681 103Ga0318521_109976771 104Ga0318546_103522192 105Ga0318498_103976341 106Ga0318566_101197622 107Ga0318566_102294521 108Ga0318552_101517031 109Ga0318552_103751121 110Ga0318552_107429191 111Ga0318550_101665921 112Ga0318565_100467941 113Ga0318497_103714931 114Ga0318568_101703452 115Ga0318568_101855232 116Ga0318568_107931232 117Ga0318567_100450023 118Ga0318517_100454521 119Ga0318512_102716181 120Ga0318512_104554181 121Ga0318495_102260092 122Ga0318536_102729181 123Ga0318520_101097641 124Ga0306923_121960182 125Ga0306923_122394402 126Ga0306921_118618151 127Ga0306921_122958412 128Ga0310910_101020093 129Ga0310910_112582381 130Ga0306926_109212121 131Ga0306926_115976772 132Ga0306922_101527721 133Ga0306922_117191111 134Ga0318562_105539121 135Ga0318562_107648811 136Ga0318569_101015442 137Ga0318556_100174601 138Ga0318556_101875321 139Ga0318556_104409711 140Ga0318558_100776263 141Ga0318570_103201041 142Ga0318570_104443001 143Ga0318575_100573161 144Ga0318575_100733813 145Ga0318533_110729492 146Ga0318510_100599281 147Ga0318514_100424501 148Ga0318514_107043631 149Ga0318553_104074832 150Ga0306924_102285883 151Ga0306924_120380291 152Ga0318525_106084851 153Ga0318518_102620761 154Ga0318540_106481151 155Ga0307471_1027973681 156Ga0306920_1008127762 157Ga0335078_104904711 158Ga0335080_105516161 159Ga0335080_120924301 160Ga0335077_109241471 161Ga0310914_107703431
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110. 1JGI10216J12902_1135225431 2Ga0062595_1011868532 3Ga0062388_1021030242 4Ga0066388_1034114852 5Ga0070733_101061393 6Ga0066903_1089083521 7Ga0066665_114782231 8Ga0075434_1024133041 9Ga0126384_120965822 10Ga0126373_113121062 11Ga0126370_117825191 12Ga0126370_118983962 13Ga0181524_102493311 14Ga0182037_102045781 15Ga0182039_121641591 16Ga0187820_11323471 17Ga0187779_108442722 18Ga0318497_103714931 19Ga0318512_102716181 20Ga0318575_100733813
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66. 1Ga0066388_1021364841 2JGI10216J12902_1135225431 3Ga0062595_1011868532 4Ga0066388_1034114852 5Ga0066388_1062170941 6Ga0066903_1089083521 7Ga0126374_117158151 8Ga0137419_102628371 9Ga0182035_116394271 10Ga0187820_11323471 11Ga0187809_102490271 12Ga0187779_107189722 13Ga0187779_108442722 14Ga0187781_102386621 15Ga0187874_102616701 16Ga0187772_109105962 17Ga0126371_102814201 18Ga0209624_101955403 19Ga0311369_114318721 20Ga0318561_102426442 21Ga0318560_103749722 22Ga0318517_100454521 23Ga0318512_102716181 24Ga0318556_101875321 25Ga0335078_104904711 26Ga0310914_107703431
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Neighboring Clusters of Orthologous Genes (COGs)

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.32% β-sheet: 0.00% Coil/Unstructured: 33.68%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Structure Viewer
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF03636	Glyco_hydro_65N	4.35
PF13545	HTH_Crp_2	3.11
PF00027	cNMP_binding	2.48
PF13401	AAA_22	1.86
PF12679	ABC2_membrane_2	1.86
PF00583	Acetyltransf_1	1.24
PF00561	Abhydrolase_1	0.62
PF00300	His_Phos_1	0.62
PF03466	LysR_substrate	0.62
PF10009	DUF2252	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG1554	Phosphatase/phosphodiesterase/kojibiose phosphorylase YcjT/PafA/Npp1, AlkP superfamily	Carbohydrate transport and metabolism [G]	4.35
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.62
COG3485	Protocatechuate 3,4-dioxygenase beta subunit	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.62
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	0.62

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.80 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.10 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	39.13 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3.11 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	24.84 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	0.62 %
Unclassified	root	N/A	47.20 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	1.86 %

Name	Rank	Taxonomy	Distribution
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.86 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	1.24 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	3.11 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	1.24 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2.48 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.62 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	4.35 %
Unclassified	root	N/A	47.20 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.62 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.86 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	1.24 %
Intrasporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae	1.86 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	1.24 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	0.62 %
Patulibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae	0.62 %
Promicromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae	0.62 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	4.35 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.62 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.62 %
Cellulosimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.86 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	0.62 %
Knoellia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia	1.24 %
Micromonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora	0.62 %
Nocardioides	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides	0.62 %
Patulibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter	0.62 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	4.35 %
Unclassified	root	N/A	47.20 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.62 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.62 %
Cellulosimicrobium cellulans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Promicromonosporaceae → Cellulosimicrobium → Cellulosimicrobium cellulans	0.62 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1.86 %
Geodermatophilus obscurus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus → Geodermatophilus obscurus	0.62 %
Knoellia subterranea	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Intrasporangiaceae → Knoellia → Knoellia subterranea	1.24 %
Micromonospora ureilytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora ureilytica	0.62 %
Nocardioides gansuensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Nocardioides → Nocardioides gansuensis	0.62 %
Patulibacter minatonensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Patulibacteraceae → Patulibacter → Patulibacter minatonensis	0.62 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	4.35 %
Unclassified	root	N/A	47.20 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000956\|JGI10216J12902_113522543	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Micromonospora → Micromonospora ureilytica	1036	Open in IMG/M
3300000956\|JGI10216J12902_114407531	Not Available	561	Open in IMG/M
3300004479\|Ga0062595_101186853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	676	Open in IMG/M
3300004635\|Ga0062388_102103024	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300005332\|Ga0066388_102136484	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1008	Open in IMG/M
3300005332\|Ga0066388_103411485	Not Available	812	Open in IMG/M
3300005332\|Ga0066388_106217094	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300005541\|Ga0070733_10106139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1796	Open in IMG/M
3300005764\|Ga0066903_108908352	Not Available	509	Open in IMG/M
3300006176\|Ga0070765_102209030	Not Available	513	Open in IMG/M

Showing 1 to 10 of 160 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.27%
Host-Associated	Host-Associated	3.73%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	4.35%
Plants	Host-Associated → Plants	3.73%
Terrestrial	Environmental → Terrestrial	91.93%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	4.35%
Peat	Environmental → Terrestrial → Peat	1.24%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.73%
Soil	Environmental → Terrestrial → Soil	90.68%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	3.73%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.35%

Habitat	Taxonomy	Distribution
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.24%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.11%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.98%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.73%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.86%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.24%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.66%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.73%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.24%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.62%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.62%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.62%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.62%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.24%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.86%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.11%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	48.45%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.91%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.62%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.62%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.48%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.73%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.62%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M

Showing 1 to 10 of 111 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10216J12902_1135225431	3300000956	Soil	MWLARSKPLLLLLLAWGLSFAGDLAAFLAGSVYAYRAGGAGLVAVLGLLKALPGAFLVPL
JGI10216J12902_1144075313	3300000956	Soil	MWLARSKPILLLLLAWGLSCAGDLASFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPL
Ga0062595_1011868532	3300004479	Soil	VRQYAWSARGRPIRLLLIAWCLSYAGDLAAFTAASVYVYHAGGAAYVGLLGLLKALPGAVLVPLVASWSDRMRR
Ga0062388_1021030242	3300004635	Bog Forest Soil	LRQYAWLARSKSILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVALLGLLKALPGAFLVPLVTSGSD
Ga0066388_1021364841	3300005332	Tropical Forest Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKALPGALLVPLVAS
Ga0066388_1034114852	3300005332	Tropical Forest Soil	MRQYVWLARSRPIRLLLLAWGISYAGDMAAFTVASVYLYGAGGAGYVGLLWLEYALFAVLLVPLIGSWADRVRRE
Ga0066388_1062170941	3300005332	Tropical Forest Soil	MWLARSRPILLLLTAWGLSYAGDLAAFTAASVYAFQAGGAGLVAVLGLLKALPGAFLVPV
Ga0070733_101061393	3300005541	Surface Soil	MRQYMWLARSRPIRLLLLAWGITYAGDLAAFTVASVYLFRVGGAGYVGLLGLEYALFAALLVP
Ga0066903_1089083521	3300005764	Tropical Forest Soil	MALSQYVWLARSRPIRLLLIACGLSYAGDLGAFTAASVYVFHAGGAAYVGLLGLLKAL
Ga0070765_1022090302	3300006176	Soil	MWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVP
Ga0066665_114782231	3300006796	Soil	VAGRGRPIRLLLIAWCLAYAGEAYVGLLGLLKALPGALLVPLVASWSDRMRRERL
Ga0075425_1015274891	3300006854	Populus Rhizosphere	MWLARSRPIRLLLLAWGISYAGDLAAFTVASVYLYGAGGAGYVGLLWLEYALFAAVLVPLISSWSDRVRRERLLTATHIPRA
Ga0075434_1024133041	3300006871	Populus Rhizosphere	MWLARSRPIRLLLLAWGISYAGDLAAFTVASVYLYGAGGAGYVGLLWLEYALFAAVLVPLISSWSDRVRRERLLTATHIPRAL
Ga0075426_100041321	3300006903	Populus Rhizosphere	MRQYVWPARGRPIRLLLIAWCLSYAGDLAAFTAASVYVYHAGGAAYVGLLGLLKALP
Ga0075436_1010397722	3300006914	Populus Rhizosphere	LRQYTWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSG
Ga0075435_1003032164	3300007076	Populus Rhizosphere	MRQYVWLARSRPIRLLLLAWAVSYAGDMAAFTVASVYLYGAGGAGYVGLLWLEYALFAVLLVPLIGS
Ga0126374_117158151	3300009792	Tropical Forest Soil	MGLEALRVAGPRPPIRLLLIAWCLAYAGDLAAFTAASVYVYQAGGAAYVGLLGLLKALPGALLVPLVASWSDRVRRER
Ga0126384_120965822	3300010046	Tropical Forest Soil	MGFVSGRTHEREGLAVRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYVYQAGGAAYVGLLGLLKALPGALLVPLVASWSDRMRRERLL
Ga0126373_113121062	3300010048	Tropical Forest Soil	MWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAYRAGGVGLVAVLGLLK
Ga0126373_127790881	3300010048	Tropical Forest Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVAVLGLLKALPGSFLVPLVTSG
Ga0126370_117825191	3300010358	Tropical Forest Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDRVRRERLLIATVVSRVLLLG
Ga0126370_118983962	3300010358	Tropical Forest Soil	VWSARGRPIRLLLLAWGLSYAGDLAAFTSASVYVYHVGGAAYVGLLGLLKALPGALLVPLVASWSDRMRRERLLAVSVALRALLLA
Ga0126376_116677301	3300010359	Tropical Forest Soil	LRQYAWSARDRPIRLLLIAWCLAYAGDLAAFTAASVYVYQAGGAAYVGLLGLLKALPGALLVPLVASWSDRMRRERLLMVSVAVRALL
Ga0126376_118799562	3300010359	Tropical Forest Soil	MWLAHSKPILLLLMAWGLSYAGDLAAFTAASVYAFDAGGAGLVAVLGLLK
Ga0126372_128552192	3300010360	Tropical Forest Soil	VWPARGRPIRLLLIAWCLAYAGDLAAFTAASVYVYQAGGAAYVGLLGLLKALPGALLVPLVASWSDRMRRER
Ga0126378_101213951	3300010361	Tropical Forest Soil	MWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAYRAGGVGLVAVLGLLKALPGALLVPVVTSGSDRVRRERLLIATVVPRVLLLGL
Ga0126378_114564661	3300010361	Tropical Forest Soil	LAEHEREGLVLRQYVWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPGALLVPLVASWSDRVRRERL
Ga0126377_132750351	3300010362	Tropical Forest Soil	MWLAHSKPILLLLMAWGLSYAGDLAAFTAASVYAFSAGGAGLVAVLGLLKALPGAFLVP
Ga0126381_1044438302	3300010376	Tropical Forest Soil	LAVRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKALPDALL
Ga0126381_1047874121	3300010376	Tropical Forest Soil	MWLARNKPILLLLMAWGLSYAGDLAAFTAASVYAFSAGGAGLVAVLGLLKALPGAFL
Ga0126383_113360102	3300010398	Tropical Forest Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFL
Ga0137419_102628371	3300012925	Vadose Zone Soil	LRQYTWLARSKPILLLLIAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSG
Ga0126369_106639993	3300012971	Tropical Forest Soil	VWLARSRPIRLLLVAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLVASWSDRVRR
Ga0181524_102493311	3300014155	Bog	VAWGLSYAGDLAAFTAASVYAYRTGGAGLVGILGLAKALPGAFLVPLVTSGSDRVRRERLLIATVVPRA
Ga0182036_117864951	3300016270	Soil	MRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAILVPLVSSWSDRVRRERLLTATLIPRALLL
Ga0182035_116394271	3300016341	Soil	LRQYAWLARSRPILLLLVAWGLSYAGDLAAFTAASVYAYRAGGTGLVGILGLAKALPGAFLVP
Ga0182032_108306381	3300016357	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLV
Ga0182032_114575802	3300016357	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPGALLVPLVASWSDRVRR
Ga0182040_108142952	3300016387	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLVGSWSD
Ga0182037_102045781	3300016404	Soil	VRQYTWLAHSRPLRHLLLACLVCYAGDLAAFTAASVYAYHAGGAGLVAVLGLLKALPGAILVPLLT
Ga0182037_120386182	3300016404	Soil	LRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAFRAGGAGLVAVLGLLKALPGAFLVPVVTSGSD
Ga0182039_107246252	3300016422	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLVG
Ga0182039_121641591	3300016422	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGL
Ga0182038_101137314	3300016445	Soil	VRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLGLLKALPGALLVPLVGSW
Ga0187820_11323471	3300017924	Freshwater Sediment	MWLARNRPIRLLLMAWGACYASDLAAFTAASVYAYRTGGAGLVGIFGLAKGLSGALL
Ga0187809_102490271	3300017937	Freshwater Sediment	MAVRQYVWLARSRSIRRLLLACGVCYAGDLAAFTAASVYAYHAGGTGLVAVLGLLKALPGSL
Ga0187779_107189722	3300017959	Tropical Peatland	MRQYIWLAHSRPMRHLLVACGVCYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGALLVPAVTSGSDR
Ga0187779_108442722	3300017959	Tropical Peatland	VRQYLWLARSGPIRLLLMAWGVCYAGDLAAFTAASVYAYRTGGAGLVGILGLARGLSGALLVPLVTSWSDRVRQERLLVASVVPRALLLGAA
Ga0187783_105435581	3300017970	Tropical Peatland	MRQYMWLARSRPIRLLLLAWGVTYAGDLAAFTVASVYLYRAGGAGYVGLLWLEYALFAALLVPLISSWSDRVRRERLLIATLVPRALLL
Ga0187781_102386621	3300017972	Tropical Peatland	VRPYLWLARSRPIGLLLMAWGLSYAGDLAAFTAASVYAYRTGGAGLVGILGLIR
Ga0187780_104847062	3300017973	Tropical Peatland	MWLARNRPIRLLLMAWGACYASDLAAFTAASVYAYRTGGAGLVGIFGLARGLSGALLVPLVTSWSDRVRRE
Ga0187874_102616701	3300018019	Peatland	LRHFTWRSRSKPILLLLVAWGLSYAGDLAAFTAASVYAYRTGGAGLVGILGLAKALPGAFLVPLVTSGSDRVRRERLLIATVV
Ga0187861_102030111	3300018020	Peatland	LRHFTWRSRSKPILLLLVAWGLSYAGDLAAFTAASVYAYRTGGAGLVGILGLAKALPGAFLVPLVTSGSDR
Ga0187890_108822521	3300018044	Peatland	MWLARSKPILLLLAAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALP
Ga0187772_109105962	3300018085	Tropical Peatland	LRQYAWLARSKPILLLLVAWGLSYGGDLAAFTAGSVYAYHAGGAGLVALLGLLKALLGALLVPLVTSGSDRVR
Ga0210403_110582511	3300020580	Soil	LRQYTWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSGSDRTRR
Ga0213873_102496941	3300021358	Rhizosphere	VRQYTWLLRSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLV
Ga0210402_118229691	3300021478	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPL
Ga0126371_102814201	3300021560	Tropical Forest Soil	MWVARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRSGGVGLVAVLGLLKALPGALLVPVVTSGSDRVRGE
Ga0126371_113980731	3300021560	Tropical Forest Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAFRAGGAGLVAVLGLLKALPGAFL
Ga0126371_118862722	3300021560	Tropical Forest Soil	MTGFVSDRTHEREGLTVRQYVWLARSRPIRLLLVAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLVASWSDRVR
Ga0126371_126456842	3300021560	Tropical Forest Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAF
Ga0209073_101824921	3300027765	Agricultural Soil	VRRYGWPARGRPIRLLLIAWCLSYAGDLAAFTAASVYVYYAGGAAYVGLLGLLKALPGALLVPLVASWSDRMRRERLLMISVAVRA
Ga0209624_101955403	3300027895	Forest Soil	MRQYIWLARSRPIRLLLLAWGITYAGDLAAFTVASVYLYRVGGAGYVGLLGLEYALFAALLVPLISSWSD
Ga0222749_107153551	3300029636	Soil	LRQYTWLVRSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSGSD
Ga0311369_114318721	3300029910	Palsa	LVLRRNTWLASSKSILLLLSAGGLSYAGDLAAFTAASVYAYHAGGAGLVALLGLLKALPGVFLVPLISSQ
Ga0311355_113885471	3300030580	Palsa	LRRNTWLASSKSILLLLSAGGLSYAGDLAAFTAASVYAYHAGGAGLVALLGLLK
Ga0318534_100599183	3300031544	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVP
Ga0318534_106129202	3300031544	Soil	VRRYVWPARGRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPGAVLVPLVASWSDRVRRERL
Ga0318541_101203411	3300031545	Soil	VRQYTWLAHSRPLRHLLLACLVCYAGDLAAFTAASVYAYHAGGAGLVAVLGLLKALPGAILVPLLTSWADR
Ga0318541_103041891	3300031545	Soil	MRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAVLVPLVSSWSDRVLRERLLT
Ga0318538_101706551	3300031546	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGAFLVPLVTSWSDRV
Ga0318538_105672202	3300031546	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLG
Ga0318538_106115061	3300031546	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDRVRRERLLIATVVP
Ga0318573_100881741	3300031564	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGAL
Ga0318573_103056622	3300031564	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDRVRRERLLIATVVPRVLLLGVA
Ga0318573_108022891	3300031564	Soil	VRQYVWLARSRPIRLLLLAWTLSNAGDLAAFTAASVYVYHAGGAAYVGLLGLLKALPGALLVPLVASWSDRVRRERLLMA
Ga0318515_104733212	3300031572	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVAVLGLLKALA
Ga0318561_102426442	3300031679	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGALLVPLVTS
Ga0318574_109389262	3300031680	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLV
Ga0318572_101014082	3300031681	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPG
Ga0318572_106399541	3300031681	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDRVRRERLLIATVVPRVLLLG
Ga0318560_103749722	3300031682	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKALPGAILVPLLTSWADRVR
Ga0318496_101729672	3300031713	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDR
Ga0306917_108518251	3300031719	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRRER
Ga0306917_110615031	3300031719	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPL
Ga0306917_110978441	3300031719	Soil	MWLAHSKPILLLLMAWGLSYAGDLAAFTAASVYAFDAGGAGLVAVLGLLKA
Ga0318493_100366224	3300031723	Soil	VRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLGLLKALPGALLVPLVGSWSDRVR
Ga0318493_105075032	3300031723	Soil	LRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAFRAGGAGLVAVLGLLK
Ga0318500_101681401	3300031724	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGAFLVP
Ga0318502_102354232	3300031747	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKALPGAILVPLLTSWADRV
Ga0318492_100843781	3300031748	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLVAS
Ga0318492_100959052	3300031748	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFLVPVVTSGSDRVRRERLLIATVVPR
Ga0318492_103996921	3300031748	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPVVTSG
Ga0318494_102678072	3300031751	Soil	VRQYVWLARSRPIRLLLLAWTLSNAGDLAAFTAASVYVYHAGGAAYVGLLGLLKALPGALLVPLVASWSDR
Ga0318494_107432471	3300031751	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLVLLKALL
Ga0318494_107476351	3300031751	Soil	VRQYVWLARSRPIRLLLTAWFLSYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKALPGALLVPLVAS
Ga0318535_101497401	3300031764	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSGSDRVRRE
Ga0318535_102239232	3300031764	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKA
Ga0318554_102473692	3300031765	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKALPGAILVPL
Ga0318509_101063023	3300031768	Soil	LRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAFRAGGAGLVAV
Ga0318521_104045681	3300031770	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALP
Ga0318521_109976771	3300031770	Soil	VLEHEGLALRQYTWLARSKPMLLLLMAWGLSYAGDLAAFTAASVYAYRAGGAGLVAILGLLKALPGAFIVPLVTSGSDRVR
Ga0318546_103522192	3300031771	Soil	LRQYLWLARSKPILLLLIAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLL
Ga0318498_103976341	3300031778	Soil	MRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAILVPLVSSWSDRVRRERLL
Ga0318566_101197622	3300031779	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRRERLLMVSVALRALP
Ga0318566_102294521	3300031779	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKAL
Ga0318552_101517031	3300031782	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKALPGAILVPLLTSWAD
Ga0318552_103751121	3300031782	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRVR
Ga0318552_107429191	3300031782	Soil	VRQYVWLARSRPIRLLLIAWFLSYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKAL
Ga0318550_101665921	3300031797	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLL
Ga0318565_100467941	3300031799	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKAL
Ga0318497_103714931	3300031805	Soil	MRQYGWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAILVPLVSSWS
Ga0318568_101703452	3300031819	Soil	VRQYVWPARGRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPGAVLVPLVASWSDRVRRERLLAVSVAL
Ga0318568_101855232	3300031819	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAK
Ga0318568_107931232	3300031819	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRRERLLM
Ga0318567_100450023	3300031821	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGA
Ga0318517_100454521	3300031835	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKARPGARVTCVDLPGTGVHY
Ga0318512_102716181	3300031846	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPTSGTSSAPGSA
Ga0318512_104554181	3300031846	Soil	VRQYVWLARSRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPG
Ga0318495_102260092	3300031860	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLVASWSDRVR
Ga0318536_102729181	3300031893	Soil	MWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAVLVPLVSSWSDRVLRERLLTAT
Ga0318520_101097641	3300031897	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGAFLVPLVTSWSDRVRRAA
Ga0306923_121960182	3300031910	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRRERLLMVS
Ga0306923_122394402	3300031910	Soil	VRQYVWLARSRPIRLLLIAWGLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLV
Ga0306921_118618151	3300031912	Soil	VTGFVCDRTHEREGFAVRQYVWLARSRPIRLLLVAWGLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLVPLVASWSDR
Ga0306921_122958412	3300031912	Soil	MRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAILVPLVS
Ga0310910_101020093	3300031946	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKAL
Ga0310910_112582381	3300031946	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAASVYAYRAGGAGLVAVLGL
Ga0306926_109212121	3300031954	Soil	VWLARSRPIRRLLLAWFLAYAGDLAAFTAASVYVYRVGGAAYVGLLGLLKALPGALLVPLVASWSDRV
Ga0306926_115976772	3300031954	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLK
Ga0306922_101527721	3300032001	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGTGLVAVLGLLKALPGAFL
Ga0306922_117191111	3300032001	Soil	LRQYLWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVP
Ga0318562_105539121	3300032008	Soil	MRQYMWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGVLGVEWALSAAILVPLVSSWSDRVRRE
Ga0318562_107648811	3300032008	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALP
Ga0318569_101015442	3300032010	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPG
Ga0318556_100174601	3300032043	Soil	VRQYVWLARSRPIRLLLLAWFLAYAGDLAAFTAASVYVYAVGGAAYVGLLGLLKALPGALLVPLVGSWSDRV
Ga0318556_101875321	3300032043	Soil	VRHYLWLAHNGPIRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLALAHAPYWPYLM
Ga0318556_104409711	3300032043	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVAVLG
Ga0318558_100776263	3300032044	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRRERLLMA
Ga0318570_103201041	3300032054	Soil	LRQYVWLARGRPIRLLLLAWGLSYAGDLAAFTAASVYVYHAGGAAYVGLLGLL
Ga0318570_104443001	3300032054	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPGALLVPLVTS
Ga0318575_100573161	3300032055	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGLLKALPGAILVPLLT
Ga0318575_100733813	3300032055	Soil	VWLARSRPIRLLLIAWCLSYAGDLAAFTAASVYVYRVGGVAYVGLLGLLKALPGALLV
Ga0318533_110729492	3300032059	Soil	LRQYLWLARSKPILLLLTAWCLSYAGDLAAFTAASVYAFRAGGAGLVAVLGLLKALP
Ga0318510_100599281	3300032064	Soil	VRQYVWPARGRPIRLLLLAWCLSYAGDLAAFTAASVYVYHVGGAAYVGLLGLLKALPGAVLVPLVASWS
Ga0318514_100424501	3300032066	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLVGSWSDRVRR
Ga0318514_107043631	3300032066	Soil	VRHYIWLARNRPFRLLLVAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGLAKALPG
Ga0318553_104074832	3300032068	Soil	VRQYTWLAHSRPLRHLLLACLVCYAGDLAAFTAASVYAYHAGGAGLVAVLGLLKALPGAI
Ga0306924_102285883	3300032076	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKAQPGALLVPLVGSW
Ga0306924_120380291	3300032076	Soil	VRQYTWLAHSRPLRHLLVACLVCYAGDLAAFTAASVYAFHAGGAGLVAVLGL
Ga0318525_106084851	3300032089	Soil	VRQYVWLARSRPIRLLLLAWFLSYAGDLAAFTAASVYVYAAGGAAYVGLLGLLKALPGALLVPLVGSWSDRV
Ga0318518_102620761	3300032090	Soil	MWLARSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPVVTSGSDRV
Ga0318540_106481151	3300032094	Soil	VRHYIWLARNRPIRLLLAAWGVSYAGDLAAFTAASVYAYHAGGAGLVGLLGL
Ga0307471_1027973681	3300032180	Hardwood Forest Soil	LRQYTWLVRSKPILLLLTAWGLSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLVPLVTSGS
Ga0306920_1008127762	3300032261	Soil	VRQYVWLARSRPIRRLLLAWFLSYAGDLAAFTAASVYVYTVGGAAYVGLLGLLKALPGALLVPLVGSWSDRV
Ga0335078_104904711	3300032805	Soil	MMQYIWLARRRHMRHLLVAWCVCYAGDLAAFTAASVYAYRVGGAGLVAVLGLLKALPGAILVPLLAS
Ga0335080_105516161	3300032828	Soil	LRQYRWLARSKPILLLLTAWGMSYAGDLAAFTAASVYAYRAGGAGLVAVLGLLKALPGAFLV
Ga0335080_120924301	3300032828	Soil	MWLARSKPILLLLTAWGMSYAGDLAAFTAGSVYAYRAGGAGLVAVLGLLKALPGAFLVPL
Ga0335077_109241471	3300033158	Soil	MWLARSRPVLLLLVAWGLCYAGDLAAFTAASVYAYRAGGAGLVGILGLAK
Ga0310914_107703431	3300033289	Soil	MRQYRWLARSRPILLLLLAWGISYAGDMAAYTVASVYLYHAGGAGYVGLLGVEWALSAAILVPLVSSWS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040725

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences