Metagenome Family F040710

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F040710
Family Type	Metagenome
Number of Sequences	161
Average Sequence Length	44 residues
Representative Sequence	MKYFGTVKSFDTIKGHGEIKPETGGDDLRFERSAISWDKD
Number of Associated Samples	117
Number of Associated Scaffolds	161

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	95.03 %
% of genes near scaffold ends (potentially truncated)	98.14 %
% of genes from short scaffolds (< 2000 bps)	91.30 %
Associated GOLD sequencing projects	103
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.58

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (71.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere (12.422 % of family members)
Environment Ontology (ENVO)	Unclassified (59.627 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (73.292 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 4.41% β-sheet: 25.00% Coil/Unstructured: 70.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.58
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.58
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 161 Family Scaffolds
PF00313	CSD	8.07
PF10276	zf-CHCC	1.86
PF02910	Succ_DH_flav_C	1.86
PF13426	PAS_9	1.24
PF02586	SRAP	1.24
PF05433	Rick_17kDa_Anti	1.24
PF13202	EF-hand_5	0.62
PF01266	DAO	0.62
PF09351	DUF1993	0.62
PF12697	Abhydrolase_6	0.62
PF07883	Cupin_2	0.62
PF00691	OmpA	0.62
PF01381	HTH_3	0.62
PF08448	PAS_4	0.62
PF09413	DUF2007	0.62
PF01467	CTP_transf_like	0.62
PF01431	Peptidase_M13	0.62
PF11127	DUF2892	0.62
PF13545	HTH_Crp_2	0.62
PF03734	YkuD	0.62

COG ID	Name	Functional Category	% Frequency in 161 Family Scaffolds
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	1.24
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.62
COG3590	Predicted metalloendopeptidase	Posttranslational modification, protein turnover, chaperones [O]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	71.43 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	66.46 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	62.73 %
Unclassified	root	N/A	28.57 %

Name	Rank	Taxonomy	Distribution
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	54.66 %
Unclassified	root	N/A	28.57 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	50.93 %
Unclassified	root	N/A	28.57 %
Erythrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	49.69 %
Unclassified	root	N/A	28.57 %
Erythrobacter/Porphyrobacter group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	9.32 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	5.59 %
Porphyrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter	0.62 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Sphingomonas sp. SE220	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	6.83 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	5.59 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1.24 %
Sphingomonas sp. LH128	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. LH128	0.62 %
unclassified Porphyrobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter → unclassified Porphyrobacter	0.62 %
Sphingomonas sp. SM33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SM33	0.62 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	28.57 %
Sphingomonas sp. SE220	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	6.83 %
Sphingomonas jaspsi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	5.59 %
Sphingomonas sp. URHD0057	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	1.24 %
Porphyrobacter sp. HL-46	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter → unclassified Porphyrobacter → Porphyrobacter sp. HL-46	0.62 %
Sphingomonas sp. LH128	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. LH128	0.62 %
Sphingomonas sp. SM33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SM33	0.62 %
Sphingomonas daechungensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	0.62 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.62 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459020\|G1P06HT02IU9MT	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	526	Open in IMG/M
3300000881\|JGI10215J12807_1386569	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	860	Open in IMG/M
3300001990\|JGI24737J22298_10052831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1231	Open in IMG/M
3300001990\|JGI24737J22298_10234667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	541	Open in IMG/M
3300002067\|JGI24735J21928_10076739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	957	Open in IMG/M
3300002155\|JGI24033J26618_1041453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	643	Open in IMG/M
3300002244\|JGI24742J22300_10065186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	673	Open in IMG/M
3300004114\|Ga0062593_101127105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	817	Open in IMG/M
3300004114\|Ga0062593_102854558	Not Available	552	Open in IMG/M
3300004153\|Ga0063455_101312258	Not Available	552	Open in IMG/M
3300004463\|Ga0063356_102813624	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SM33	749	Open in IMG/M
3300004643\|Ga0062591_100339983	All Organisms → cellular organisms → Bacteria → Proteobacteria	1206	Open in IMG/M
3300005093\|Ga0062594_102970346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300005093\|Ga0062594_103384262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	501	Open in IMG/M
3300005290\|Ga0065712_10250334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	948	Open in IMG/M
3300005290\|Ga0065712_10803620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	511	Open in IMG/M
3300005293\|Ga0065715_10780427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	586	Open in IMG/M
3300005327\|Ga0070658_10568608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	981	Open in IMG/M
3300005327\|Ga0070658_10831548	Not Available	802	Open in IMG/M
3300005327\|Ga0070658_11739621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	539	Open in IMG/M
3300005329\|Ga0070683_102252166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	523	Open in IMG/M
3300005330\|Ga0070690_101127184	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	623	Open in IMG/M
3300005339\|Ga0070660_100520604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	990	Open in IMG/M
3300005344\|Ga0070661_101043037	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	680	Open in IMG/M
3300005347\|Ga0070668_100473467	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1080	Open in IMG/M
3300005347\|Ga0070668_102118966	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	519	Open in IMG/M
3300005366\|Ga0070659_100053957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3165	Open in IMG/M
3300005367\|Ga0070667_101786255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	579	Open in IMG/M
3300005440\|Ga0070705_101481893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Erythrobacteraceae → Erythrobacter/Porphyrobacter group → Porphyrobacter → unclassified Porphyrobacter → Porphyrobacter sp. HL-46	568	Open in IMG/M
3300005535\|Ga0070684_100381621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1298	Open in IMG/M
3300005542\|Ga0070732_10465205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	765	Open in IMG/M
3300005548\|Ga0070665_102111802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	568	Open in IMG/M
3300005563\|Ga0068855_100452461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1401	Open in IMG/M
3300005577\|Ga0068857_101592755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	637	Open in IMG/M
3300005614\|Ga0068856_100410705	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	1374	Open in IMG/M
3300005614\|Ga0068856_100469083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1280	Open in IMG/M
3300005614\|Ga0068856_101400429	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	714	Open in IMG/M
3300005617\|Ga0068859_100067846	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	3602	Open in IMG/M
3300005617\|Ga0068859_101203216	All Organisms → cellular organisms → Bacteria	834	Open in IMG/M
3300005718\|Ga0068866_11375090	Not Available	515	Open in IMG/M
3300005834\|Ga0068851_10021577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	3127	Open in IMG/M
3300005841\|Ga0068863_102386523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. LH128	538	Open in IMG/M
3300005842\|Ga0068858_100965109	All Organisms → cellular organisms → Bacteria → Proteobacteria	835	Open in IMG/M
3300006051\|Ga0075364_10538091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	798	Open in IMG/M
3300006195\|Ga0075366_10609172	Not Available	677	Open in IMG/M
3300006237\|Ga0097621_102035616	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	549	Open in IMG/M
3300006353\|Ga0075370_10978791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	518	Open in IMG/M
3300009093\|Ga0105240_12742282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	507	Open in IMG/M
3300009101\|Ga0105247_11712601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	520	Open in IMG/M
3300009156\|Ga0111538_13341023	Not Available	558	Open in IMG/M
3300009177\|Ga0105248_12057787	Not Available	649	Open in IMG/M
3300009545\|Ga0105237_12448062	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	532	Open in IMG/M
3300009551\|Ga0105238_11344344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	741	Open in IMG/M
3300010042\|Ga0126314_10724084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	730	Open in IMG/M
3300010399\|Ga0134127_10066722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3040	Open in IMG/M
3300010399\|Ga0134127_12396569	Not Available	607	Open in IMG/M
3300011119\|Ga0105246_11250030	Not Available	686	Open in IMG/M
3300011119\|Ga0105246_11508230	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	632	Open in IMG/M
3300012490\|Ga0157322_1050695	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	504	Open in IMG/M
3300012509\|Ga0157334_1063910	Not Available	538	Open in IMG/M
3300012582\|Ga0137358_11053391	Not Available	522	Open in IMG/M
3300012895\|Ga0157309_10311501	Not Available	535	Open in IMG/M
3300012958\|Ga0164299_11006021	Not Available	615	Open in IMG/M
3300012987\|Ga0164307_11716944	Not Available	532	Open in IMG/M
3300013102\|Ga0157371_10561508	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300013102\|Ga0157371_10771697	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	723	Open in IMG/M
3300013102\|Ga0157371_11199542	Not Available	585	Open in IMG/M
3300013104\|Ga0157370_10862329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	823	Open in IMG/M
3300013104\|Ga0157370_12005273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	519	Open in IMG/M
3300013105\|Ga0157369_12463241	Not Available	527	Open in IMG/M
3300013296\|Ga0157374_11908997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	620	Open in IMG/M
3300013297\|Ga0157378_10970572	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300013297\|Ga0157378_11935694	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	639	Open in IMG/M
3300013297\|Ga0157378_12509527	Not Available	567	Open in IMG/M
3300013306\|Ga0163162_10756166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1091	Open in IMG/M
3300014325\|Ga0163163_11092653	Not Available	860	Open in IMG/M
3300014968\|Ga0157379_10141853	All Organisms → cellular organisms → Bacteria	2166	Open in IMG/M
3300015371\|Ga0132258_10202781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4813	Open in IMG/M
3300015371\|Ga0132258_10572101	All Organisms → cellular organisms → Bacteria	2834	Open in IMG/M
3300015372\|Ga0132256_102000592	Not Available	686	Open in IMG/M
3300015373\|Ga0132257_101660761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	818	Open in IMG/M
3300015373\|Ga0132257_104621743	Not Available	501	Open in IMG/M
3300015374\|Ga0132255_100064405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	4841	Open in IMG/M
3300015374\|Ga0132255_101929103	Not Available	898	Open in IMG/M
3300015374\|Ga0132255_104893111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	567	Open in IMG/M
3300018476\|Ga0190274_11915106	Not Available	688	Open in IMG/M
3300021445\|Ga0182009_10712330	Not Available	544	Open in IMG/M
3300025893\|Ga0207682_10434814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	621	Open in IMG/M
3300025899\|Ga0207642_11000926	Not Available	538	Open in IMG/M
3300025901\|Ga0207688_10079025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1876	Open in IMG/M
3300025901\|Ga0207688_10971537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	537	Open in IMG/M
3300025904\|Ga0207647_10271745	Not Available	969	Open in IMG/M
3300025904\|Ga0207647_10310936	Not Available	896	Open in IMG/M
3300025904\|Ga0207647_10341374	Not Available	849	Open in IMG/M
3300025907\|Ga0207645_11060472	Not Available	547	Open in IMG/M
3300025917\|Ga0207660_11136574	Not Available	636	Open in IMG/M
3300025919\|Ga0207657_11061857	Not Available	620	Open in IMG/M
3300025920\|Ga0207649_10066562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2284	Open in IMG/M
3300025920\|Ga0207649_10466601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	955	Open in IMG/M
3300025920\|Ga0207649_10536142	Not Available	894	Open in IMG/M
3300025921\|Ga0207652_10197492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1810	Open in IMG/M
3300025923\|Ga0207681_11760017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	517	Open in IMG/M
3300025924\|Ga0207694_11559541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	557	Open in IMG/M
3300025925\|Ga0207650_10752575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	825	Open in IMG/M
3300025931\|Ga0207644_10832125	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	772	Open in IMG/M
3300025931\|Ga0207644_11040796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas daechungensis	687	Open in IMG/M
3300025932\|Ga0207690_10226537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1433	Open in IMG/M
3300025932\|Ga0207690_10333189	Not Available	1196	Open in IMG/M
3300025932\|Ga0207690_10778645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	790	Open in IMG/M
3300025932\|Ga0207690_10859999	Not Available	751	Open in IMG/M
3300025941\|Ga0207711_10550318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1076	Open in IMG/M
3300025942\|Ga0207689_11081006	Not Available	676	Open in IMG/M
3300025944\|Ga0207661_10071600	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2833	Open in IMG/M
3300025945\|Ga0207679_11311684	Not Available	664	Open in IMG/M
3300025945\|Ga0207679_11691654	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	579	Open in IMG/M
3300025949\|Ga0207667_10361129	Not Available	1481	Open in IMG/M
3300025949\|Ga0207667_10564276	Not Available	1150	Open in IMG/M
3300025949\|Ga0207667_11916336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	554	Open in IMG/M
3300025972\|Ga0207668_10351420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1233	Open in IMG/M
3300025981\|Ga0207640_10850871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300025986\|Ga0207658_12153914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	506	Open in IMG/M
3300026067\|Ga0207678_10316684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1342	Open in IMG/M
3300026067\|Ga0207678_10647699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	928	Open in IMG/M
3300026067\|Ga0207678_11031357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0057	728	Open in IMG/M
3300026067\|Ga0207678_11558075	Not Available	582	Open in IMG/M
3300026078\|Ga0207702_11027512	Not Available	818	Open in IMG/M
3300026078\|Ga0207702_11222645	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	745	Open in IMG/M
3300026078\|Ga0207702_12209237	Not Available	539	Open in IMG/M
3300026088\|Ga0207641_10420992	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300026116\|Ga0207674_10139313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2386	Open in IMG/M
3300026121\|Ga0207683_10107013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	2501	Open in IMG/M
3300026121\|Ga0207683_10817968	All Organisms → cellular organisms → Bacteria → Proteobacteria	865	Open in IMG/M
3300027718\|Ga0209795_10152757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	651	Open in IMG/M
3300028381\|Ga0268264_10528950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1154	Open in IMG/M
3300028587\|Ga0247828_10365542	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	819	Open in IMG/M
3300028590\|Ga0247823_11369074	Not Available	530	Open in IMG/M
3300028596\|Ga0247821_10444641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	816	Open in IMG/M
3300028597\|Ga0247820_10299112	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1053	Open in IMG/M
3300031562\|Ga0310886_10015179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	2947	Open in IMG/M
3300031562\|Ga0310886_10371957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	836	Open in IMG/M
3300031824\|Ga0307413_10233471	Not Available	1352	Open in IMG/M
3300031824\|Ga0307413_10316989	All Organisms → cellular organisms → Bacteria → Proteobacteria	1189	Open in IMG/M
3300031852\|Ga0307410_10338533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1198	Open in IMG/M
3300031852\|Ga0307410_11769379	Not Available	548	Open in IMG/M
3300031854\|Ga0310904_10414527	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300031901\|Ga0307406_11027933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	708	Open in IMG/M
3300031903\|Ga0307407_10496868	Not Available	893	Open in IMG/M
3300031911\|Ga0307412_11480680	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	616	Open in IMG/M
3300031938\|Ga0308175_102242300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	612	Open in IMG/M
3300031944\|Ga0310884_10731984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	600	Open in IMG/M
3300031995\|Ga0307409_101768583	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	647	Open in IMG/M
3300032004\|Ga0307414_11523860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	622	Open in IMG/M
3300032005\|Ga0307411_10265324	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300032075\|Ga0310890_10093558	All Organisms → cellular organisms → Bacteria → Proteobacteria	1863	Open in IMG/M
3300032075\|Ga0310890_11108671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	641	Open in IMG/M
3300032122\|Ga0310895_10264832	Not Available	800	Open in IMG/M
3300032126\|Ga0307415_101160617	Not Available	726	Open in IMG/M
3300032126\|Ga0307415_102233043	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	536	Open in IMG/M
3300032179\|Ga0310889_10000012	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → Sphingomonas jaspsi	26420	Open in IMG/M
3300032211\|Ga0310896_10235565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	919	Open in IMG/M
3300033412\|Ga0310810_11092452	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. SE220	665	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	74.53%
Environmental	Environmental	24.84%
Engineered	Engineered	0.62%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	74.53%
Terrestrial	Environmental → Terrestrial	24.84%
Solid Waste	Engineered → Solid Waste	0.62%

Habitat	Taxonomy	Distribution
Rhizosphere	Host-Associated → Plants → Rhizosphere	40.99%
Rhizoplane	Host-Associated → Plants → Rhizoplane	29.81%
Soil	Environmental → Terrestrial → Soil	24.84%
Roots	Host-Associated → Plants → Roots	3.11%
Phylloplane	Host-Associated → Plants → Phylloplane	0.62%
Grass	Engineered → Solid Waste → Grass	0.62%

Habitat	Taxonomy	Distribution
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	22.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.50%
Soil	Host-Associated → Plants → Rhizosphere → Soil	20.50%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	19.88%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	6.21%
Loam	Environmental → Terrestrial → Soil → Loam	4.97%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.86%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.24%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.62%
Composting	Engineered → Solid Waste → Grass → Composting	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	22.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	20.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	7.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	6.21%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.11%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.24%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.24%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.62%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.62%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.62%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	12.42%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	12.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.70%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	7.45%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	6.21%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.73%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.73%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.73%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.11%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	3.11%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	2.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.48%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	1.86%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.86%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.86%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.86%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.24%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.24%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.62%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.62%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.62%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.62%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.62%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.62%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.62%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.62%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.62%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.62%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459020	Litter degradation NP2	Engineered	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300002067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1	Host-Associated	Open in IMG/M
3300002155	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX- M7	Host-Associated	Open in IMG/M
3300002244	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005290	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006353	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5	Host-Associated	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012490	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.4.old.040610	Host-Associated	Open in IMG/M
3300012509	Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012895	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S208-509C-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025945	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027718	Agave microbial communities from Guanajuato, Mexico - Or.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031911	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032179	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2	Environmental	Open in IMG/M
3300032211	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2NP_01993880	2170459020	Switchgrass, Maize And Mischanthus Litter	VPGKELIMKLFGTVKSFDTIKGQGEITPEAGGDPIHFEKSAISWDKNV
JGI10215J12807_13865693	3300000881	Soil	MKYFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFSWENDSVPTVGQR
JGI24737J22298_100528313	3300001990	Corn Rhizosphere	MKYFGTVKSFDTIRGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRL
JGI24737J22298_102346671	3300001990	Corn Rhizosphere	MKLFGTVQSFDTIKGQGEIKPEVGSDLIHFEKSAIGWEKDRLP
JGI24735J21928_100767392	3300002067	Corn Rhizosphere	MRQFWLMPGKELIMKLFGTVQSFDTIKGHGEIKPEVGSDLIGFEKSAIAWDKDRLP
JGI24033J26618_10414531	3300002155	Corn, Switchgrass And Miscanthus Rhizosphere	MKLFGTVQSFDTTKGHGEIKPEVGADLIRFEKSAIAWDKNV
JGI24742J22300_100651861	3300002244	Corn, Switchgrass And Miscanthus Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLPFETSAIQWDKNVAPT
Ga0062593_1011271051	3300004114	Soil	MKYFGTVKSFDNEQGHGMIKPETAGDELRFERSAISWGKENP
Ga0062593_1028545582	3300004114	Soil	MKLFGTVKSFDSVQGHGEITPEVGTDLIRFDKSAIAWDKATPPT
Ga0063455_1013122582	3300004153	Soil	MKLFGTVQSFDTIKGAGEIKPEVGSDLIRFHKSAIAWAKDRLPT
Ga0063356_1028136242	3300004463	Arabidopsis Thaliana Rhizosphere	MKYFGTVTSYDPVKGNGELKQEVGGTDLPFEKTAFQWDKDVAPSIGQ
Ga0062591_1003399831	3300004643	Soil	MKYFGTVKSFDDDKGVGSLKPETGGDDLYFERSAIKFDMPSV
Ga0062594_1029703462	3300005093	Soil	MKYFGTVSSFDTIKGHGEIKPETGGDPLRFERAAVSWAENAAPTV
Ga0062594_1033842622	3300005093	Soil	MKYFGTVKSFDIDKGIGSLKPETGGDDLYFERNAISWDAPKSL
Ga0065712_102503343	3300005290	Miscanthus Rhizosphere	MKYFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFSWENDTVPTVG
Ga0065712_108036202	3300005290	Miscanthus Rhizosphere	MKLFGTVQSFDTIKGQGEIKPEVGSELIHFEKSAIGWEKDRLPTV
Ga0065715_107804271	3300005293	Miscanthus Rhizosphere	MKYFGTVKSFDADKGIGSLKPETGGDDLYFERSAIKFDMPSVPS
Ga0070658_105686081	3300005327	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLRFETSAIMWDKNVAPVIGQRLSYDVGQSPERH
Ga0070658_108315481	3300005327	Corn Rhizosphere	MKYFGTVNSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAVP
Ga0070658_117396212	3300005327	Corn Rhizosphere	MKYFGTVKSFDTVAGHGEIKPETGGNDLRFETAAIMWDKNIAPVIGQRLSYDV
Ga0070683_1022521661	3300005329	Corn Rhizosphere	MKLFGTVQSFDTIRGHGEIKPELSNDVIRFERSAIAWDKDRLPTVGQRL
Ga0070690_1011271841	3300005330	Switchgrass Rhizosphere	MKYFGTVKSFDTIKGHGEIKPETGGDDLRFERSAISWDKDALPTV
Ga0070660_1005206041	3300005339	Corn Rhizosphere	MKYFGTVNSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAV
Ga0070661_1010430372	3300005344	Corn Rhizosphere	MKLFGTVKSFDTISGNGEIKPEAGGDPLRFEKKAISWGTHSPPTVG
Ga0070668_1004734671	3300005347	Switchgrass Rhizosphere	MKYFGTVMAFDVDLGLGSIKPETGGDELRFERSAISWDAPK
Ga0070668_1021189661	3300005347	Switchgrass Rhizosphere	MKYFGTVKSFDTIKGHGEIKPETGGDDLRFERSAISWDKDTLPTVGQR
Ga0070659_1000539571	3300005366	Corn Rhizosphere	MKYFGTVKTFDSATGRGEIKQETGGDDLRFEKSAISWGDKSPP
Ga0070667_1017862551	3300005367	Switchgrass Rhizosphere	MPILARAGKEPTMKLFGTVQSFDTIKGNGEIKPEVGSDLIRFHKSAIA
Ga0070705_1014818931	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKYFGTVKSFDTTKGHGEIKPETGGNDLGFEKSSIQWDKNIAPPSASA*
Ga0070684_1003816214	3300005535	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENNA
Ga0070732_104652051	3300005542	Surface Soil	MKLFGTVQSFDTIKGQGEIKPEVGSDLIHFEKSAITDKSRLPTVGQRLSY
Ga0070665_1021118022	3300005548	Switchgrass Rhizosphere	MKLFGTVKSFDSVQGHGQITPEAGGELIRFDKSAIAW
Ga0068855_1004524611	3300005563	Corn Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGSDLIRFEKSAIAWGKDR
Ga0068857_1015927552	3300005577	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLRFETSAIQWDRNV
Ga0068856_1004107051	3300005614	Corn Rhizosphere	MKYFGTVKSFDTVAGHGEIKPETGGNDLRFETAAIMWDKNIAP
Ga0068856_1004690831	3300005614	Corn Rhizosphere	MKYFGTIKSFDTIKGHGEIKQETGGNDLRFETSAIMWDKN
Ga0068856_1014004291	3300005614	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENNAVPTVGQRLSYDV
Ga0068859_1000678461	3300005617	Switchgrass Rhizosphere	MKYFGTVKSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAVPTVGQRLSYD
Ga0068859_1012032162	3300005617	Switchgrass Rhizosphere	MKYFGTVNSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAVPT
Ga0068866_113750901	3300005718	Miscanthus Rhizosphere	MKYFGTIKSFDTTKGHGEIKQEAGGNDLPFEKSAIAWAKNIVPTLGQRLSYDVGTGTDRQ
Ga0068851_100215773	3300005834	Corn Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGSDLIGFEKSAIAWDKDRLPTVGQR
Ga0068863_1023865231	3300005841	Switchgrass Rhizosphere	MKYFGTVKSFDPDKGLGTLKPETGGDDLYFERSAISWDAPKDIT
Ga0068858_1009651093	3300005842	Switchgrass Rhizosphere	MKLFGTVKSFDSAQGHGQITPEAGGELIRFDQSAIATWDKATPPTVGQR
Ga0075364_105380912	3300006051	Populus Endosphere	MKYFGTVKSFDTDKGIGALKPETGGDDLKFERNAISW
Ga0075366_106091721	3300006195	Populus Endosphere	MKYFGTVSSFDTDKGQGEIKPETDSPMLGFERSAFSWENDAVPT
Ga0097621_1020356161	3300006237	Miscanthus Rhizosphere	MKYFGTVKSFDTIQGHGEIKPEAGGDMLRFERSAFSW
Ga0075370_109787911	3300006353	Populus Endosphere	MKYFGTVKSFDTTKGHGEIKPETGGNDLGFEKSSIQWDKN
Ga0105240_127422821	3300009093	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENN
Ga0105247_117126012	3300009101	Switchgrass Rhizosphere	MKYFGTIKSFDVTQGRGEIKPETGGNDLPFEKSAIQWDKNVDPTVGQRLSYDVGQT
Ga0111538_133410231	3300009156	Populus Rhizosphere	MKYFGTVKSFDTIKGHGEIKPEAGGDMLSFGRSAFSWENDSVPTVGQ
Ga0105248_120577871	3300009177	Switchgrass Rhizosphere	VPILALPTKELTMKYFGTVNSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAVP
Ga0105237_124480622	3300009545	Corn Rhizosphere	VPGKELTMKYFGTVKSFDTTKGHGEIKPETGGNDLGFEKSSIQWDKNIAPTV
Ga0105238_113443443	3300009551	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLPFETSAI
Ga0126314_107240841	3300010042	Serpentine Soil	MKLFGTVKSFDTIKGHGEIKPEVGTDLIRFEKSAISWEKDKL
Ga0134127_100667226	3300010399	Terrestrial Soil	MKYFGTVKSFDTALGVGEIKQEVGGDDLRFEKAAISWGNENPPTV
Ga0134127_123965691	3300010399	Terrestrial Soil	MKYFGTVKTFDPDKGLGSLKPETGGDDLYFERSAIS*
Ga0105246_112500302	3300011119	Miscanthus Rhizosphere	MKYFGTIKSFDTVEGRGEIKQEAGGNDLHFSKSAIAWGKEIAPVVGQRLSYDVGTDTD
Ga0105246_115082302	3300011119	Miscanthus Rhizosphere	MKYFGTVKSFDSVKGFGELKQEAGGDDLRFEKSAISWDKN
Ga0157322_10506952	3300012490	Arabidopsis Rhizosphere	VPIKELTMKYFGTVKSFDSVKGFGELKQEAGGDDLRFEKSAISWDKNVAP
Ga0157334_10639103	3300012509	Soil	MKLFGTVKSFDTIQGHGEITPEVGSVPIRFEKKAISWGT
Ga0137358_110533912	3300012582	Vadose Zone Soil	MKYFGTVKSFDGALGHGEIKQETGGDDLRFDKAAIS
Ga0157309_103115012	3300012895	Soil	MKYFGTVKSFDSATGHGEIKQEAGGDMLPFDRSAFTWDKDVVPTVGQ
Ga0164299_110060211	3300012958	Soil	MKDFGTVKSVDSAQGFGEIKQEAGGDDLRFEKSAISW
Ga0164307_117169442	3300012987	Soil	MKLFGTIKSFDSVQGSGEIKPEATGEIVRFDKSAISWG
Ga0157371_105615081	3300013102	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLRFETSAIMWDKNVAPVI
Ga0157371_107716971	3300013102	Corn Rhizosphere	MKYFGTIKSFDTIKGHGEIKPETGGNDLRFETSAIMWDKNIAPV
Ga0157371_111995421	3300013102	Corn Rhizosphere	MKYFGTVKTFDPDKGLGSLKPETGGDDLYFERSAISWDAPKDITV
Ga0157370_108623291	3300013104	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSY
Ga0157370_120052732	3300013104	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENNAVPTVG
Ga0157369_124632411	3300013105	Corn Rhizosphere	MKYVGTVKSFDTVKGLGEIKQEAGGDDLRFEKSAIEWDQTVAPTVGQRLSYNR
Ga0157374_119089972	3300013296	Miscanthus Rhizosphere	MKYFGTVKSFDTTKGHGEIKPETGGNDLGFEKSSIQWDKNIAPTVGQRLSYD
Ga0157378_109705721	3300013297	Miscanthus Rhizosphere	MKYFGTVESFDTGKGHGEIKPETGGDLLSFGRSAFTWANDAVPTIGQRLSYDVGT
Ga0157378_119356942	3300013297	Miscanthus Rhizosphere	MKYFGTVKSFDTIKGQGEIKPETGGDDLYFERSAIAWEKHNIPTVGQRLSYD
Ga0157378_125095272	3300013297	Miscanthus Rhizosphere	MKYFGTVKSFDSVQGFGEIKQEAGGDDLRFEKSAISWDKNVAPTP
Ga0163162_107561662	3300013306	Switchgrass Rhizosphere	VPEKELIMKLFGTVKSFDTIKGHGEITPEVGSVVLPFAKSAIGWEKDRLPTVGQRLL*
Ga0163163_110926532	3300014325	Switchgrass Rhizosphere	MKYFGTVKSFDTVKGFGEIKQEAGGDDLRFEKAAISWGNETPPTVG
Ga0157379_101418531	3300014968	Switchgrass Rhizosphere	MKYFGTVKSFDTIKGHGEIKPETGGDDLRFERSAISWDKD
Ga0132258_102027811	3300015371	Arabidopsis Rhizosphere	MKYFGTVKSFDTIKGLGEIKPETGGDMLRFESSAFSWEDKSVPMVGQRLSYDVG
Ga0132258_105721016	3300015371	Arabidopsis Rhizosphere	MKYFGTVKSFDTAKGLGEIKPETGGDMLRFESSAFSWEDKSVPMVGQRLSYDVG
Ga0132256_1020005921	3300015372	Arabidopsis Rhizosphere	MNLFGSVQSFDTIKGHGEIKPEVGSDIIRFEKSAIA
Ga0132257_1016607611	3300015373	Arabidopsis Rhizosphere	VSIKELTMRLFGTVKSFDTIKGHGEIKPEVAGDVIRFEKSAISWDKN
Ga0132257_1046217431	3300015373	Arabidopsis Rhizosphere	MKYFGTVKSFDTAKGLGEIKQEAGGDDLHFDKAAISWGNDNPPT
Ga0132255_10006440513	3300015374	Arabidopsis Rhizosphere	MKYFGTVKSFDTALGHGEIKQEAGGDDLRFDKAAISWG
Ga0132255_1019291033	3300015374	Arabidopsis Rhizosphere	MKFFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFSWEND
Ga0132255_1048931111	3300015374	Arabidopsis Rhizosphere	MKEFTMKYFGTVKSFDTIKGLGEINPEVSGNAIRFETSAIMWDKNVAPTIGQRLSYD
Ga0190274_119151061	3300018476	Soil	MKYFGTVKSFDTDKGLGSLTPETGGDDLNFERSAI
Ga0182009_107123301	3300021445	Soil	MKYFGTVKSFDTLKGHGEIKQEAGGNDLPFETSAIRWDKTVAPVVGQRLSYDVGAH
Ga0207682_104348141	3300025893	Miscanthus Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGNDTIRFERSAIAWG
Ga0207642_110009261	3300025899	Miscanthus Rhizosphere	MKLFGTIKSFDSVKGFGEITPEATGETVRFEKSAIAW
Ga0207688_100790251	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKYFGSVKSFDAIKGLGELTPETGGDPLRFERSAFLWNDNSD
Ga0207688_109715371	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MKLFGTVKSFDTIKGHGEIKPEVGSDILPFAKSAIAWDKDR
Ga0207647_102717452	3300025904	Corn Rhizosphere	MKYFGTVKSFDSALGHGEIKQEAGGDDLRFDKAAISWGNEKPP
Ga0207647_103109361	3300025904	Corn Rhizosphere	MKYFGTVKTFDSATGRGEIKQETGGDDLRFEKSAISWGDKSPPTVGQRL
Ga0207647_103413742	3300025904	Corn Rhizosphere	MKFFGTVKSFDTVKGFGEIKQEAGGDDLRFEKAAISWGNET
Ga0207645_110604722	3300025907	Miscanthus Rhizosphere	MKYFGTVKSFDTIKGLGEIKPETGGDMLGFERSAF
Ga0207660_111365742	3300025917	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIEQEAGGNDLRFETSAIMWDKNVA
Ga0207657_110618572	3300025919	Corn Rhizosphere	MKFFGTVKSFDTVKGFGEIKQEAGGDDLRFEKAAISWGN
Ga0207649_100665625	3300025920	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENNAVP
Ga0207649_104666014	3300025920	Corn Rhizosphere	MKYFGTVKSFDTVKGHGEIKQEAGGNDLRFETSAIMWDKNVA
Ga0207649_105361423	3300025920	Corn Rhizosphere	MKYFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFS
Ga0207652_101974924	3300025921	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIIQEAGGNDLRFETSAIQWDKNVAPTVG
Ga0207681_117600171	3300025923	Switchgrass Rhizosphere	VKYFGTVKSFDTIKGLGEINPEVSGNAIRFETSAIMWDKNVAPTIGQRLSYDVGTNNDR
Ga0207694_115595411	3300025924	Corn Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGSDLIGFEKSAIAWDKDRL
Ga0207650_107525751	3300025925	Switchgrass Rhizosphere	MRLFGTVKSFDTIKGHGEIKPEVAGDVIRFEKSAISWDKNVVP
Ga0207644_108321251	3300025931	Switchgrass Rhizosphere	MKYFGTVKSFDLSTGHGEIKQEAGGNDLRFEKSAIAWDKNIHPTVGQRLSYDVGTSTGR
Ga0207644_110407963	3300025931	Switchgrass Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGNDLIRFEKSAIGWEKD
Ga0207690_102265371	3300025932	Corn Rhizosphere	MKYFGTVKSFDPVKGFGEIKQEAGGDDLRFEKAAI
Ga0207690_103331892	3300025932	Corn Rhizosphere	MKYFGTVKTFDSATGRGEIKQETGGDDLRFEKSAISWGDKSPPTVG
Ga0207690_107786451	3300025932	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLPFETSAIQWDKNV
Ga0207690_108599993	3300025932	Corn Rhizosphere	MKYFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFSW
Ga0207711_105503184	3300025941	Switchgrass Rhizosphere	MKYFGTVKSFDTGKGHGEIKPETGGDMLRFERSAFSWENNAVPTVGQRLSY
Ga0207689_110810062	3300025942	Miscanthus Rhizosphere	MKYFGTVKSFDPDKGLGTLKPETGGDDLYFERSAISWDAP
Ga0207661_100716001	3300025944	Corn Rhizosphere	MKYFGTVKSFDSALGHGEIKQEAGGDDLRFDKAAISWGNEN
Ga0207679_113116842	3300025945	Corn Rhizosphere	MKYFGTVNSFDTGKGHGEIKPETGGDMLRFERSAFSWE
Ga0207679_116916541	3300025945	Corn Rhizosphere	MKYFGTVSSFDTNKGHGEIKPETGGDMLRFERGAFSPENKAVPTVGQRLSY
Ga0207667_103611293	3300025949	Corn Rhizosphere	MKYFGTVKSFDTVAGHGEIKPETGGNDLRFETAAIMWD
Ga0207667_105642762	3300025949	Corn Rhizosphere	MKYFGTVKSFDTVKGFGEIKQEAGGDDLRFDKAAISWGNDSPPTVG
Ga0207667_119163361	3300025949	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLRFETSAIMWDKNVAPVIG
Ga0207668_103514204	3300025972	Switchgrass Rhizosphere	MKYFGTVMAFDVDLGLGSIKPETGGDELRFERSAISWDAPKAP
Ga0207640_108508711	3300025981	Corn Rhizosphere	MKYFGTVKSFDTIKGHGEIKQEAGGNDLPSETSAIQW
Ga0207658_121539142	3300025986	Switchgrass Rhizosphere	MKYFGTVKSFDTIRGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQ
Ga0207678_103166844	3300026067	Corn Rhizosphere	MKYVGTVKSFDTIKGLGEITQEAGGDDLRFDKSAIQWDQNVAPTV
Ga0207678_106476993	3300026067	Corn Rhizosphere	MKYVGTVKSFDTVKGLGEITQEAGGDDLRFDKSAIQWDQNVAPTV
Ga0207678_110313571	3300026067	Corn Rhizosphere	MKLFGTVKSFDSVQGHGQITPEAGGDLIRFDKSAIAWDKKTDPT
Ga0207678_115580752	3300026067	Corn Rhizosphere	MKYFGTVKSFDTIKGLGEIKPETGGDMLRFESSAFSWEDKSVPMVGQRLSY
Ga0207702_110275121	3300026078	Corn Rhizosphere	MKYFGTVKSFDPIKGYGEIKQEAGGDDLRFDKAAISWGNEN
Ga0207702_112226453	3300026078	Corn Rhizosphere	MKYFGTVSSFDAGNGHGEIKPETGGDMLRFERSAFSWENNAVPTVGQR
Ga0207702_122092371	3300026078	Corn Rhizosphere	MKYFGTIKSFDVTQGRGEIKPETGGNDLPFEKSAIQWDKNVDPTVGQ
Ga0207641_104209921	3300026088	Switchgrass Rhizosphere	MKLFGTVKSFDSAQGHGQITPEAGGELIRFDQSAIASWDKATPPTVGQR
Ga0207674_101393131	3300026116	Corn Rhizosphere	MKYFGTVKSFDTIQGHGEIKPEAGGDMLRFERSAFSWEK
Ga0207683_101070131	3300026121	Miscanthus Rhizosphere	MKYFGTVKSFDTIRGHGEIKQEAGGNDLPFETSAIQWDKNVAPTVGQRLSY
Ga0207683_108179682	3300026121	Miscanthus Rhizosphere	MKYFGTVKSFDTTKGHGQIKQETGGNDLGFEKSSIL
Ga0209795_101527571	3300027718	Agave	MKYFGTVKSFDPELGHGEIKQEAGGDDLRFDKAAIAWDQSVVPTQGQRISYD
Ga0268264_105289502	3300028381	Switchgrass Rhizosphere	MKYFGTVKSFDPDKGLGTLKPETGGDDLYFERSAISWDAPKDIP
Ga0247828_103655421	3300028587	Soil	MKLFGTVQSFDTIKGHGEIKPEVGNDLIRFEKSAIGWDKD
Ga0247823_113690741	3300028590	Soil	MKYFGTVKTFDNAQGVGEITPETGGSMLRFERSAFAWESDAVPTIG
Ga0247821_104446411	3300028596	Soil	MKYFGTVKSFDPDKGLGTLKPETGGDDLYFERSAISWDAPKD
Ga0247820_102991124	3300028597	Soil	MKYFGTVKSFDPATGHGEIKQEAGGDMLRFDRSAFSWAKDVVPTIG
Ga0310886_100151791	3300031562	Soil	MKYFGTVKSFDPATGHGEIKQEAGGDMLPFDRSAFTWDKDVVPTVGQRLSYDK
Ga0310886_103719572	3300031562	Soil	MKLFGTVHSFDTIKGRGEIKPEVGSDLIRFEKSAIAWDK
Ga0307413_102334712	3300031824	Rhizosphere	MKYFGTVKSFDTVQGHGEITQEAGGDDLRFEKSAISW
Ga0307413_103169891	3300031824	Rhizosphere	MKHFGTVKSFDHTVGSGLITPETGGPDLRFERSAFSWETG
Ga0307410_103385332	3300031852	Rhizosphere	MKYFGTVKSFDTIKGLGEIKPETGGDMLGFERSAFSWD
Ga0307410_117693792	3300031852	Rhizosphere	MKYFGTVTSYDTIKGHGELKQEAGGNDLPFEKSAFQW
Ga0310904_104145271	3300031854	Soil	MKNFGTVKTFDVAQGHGQIKPEAGGDLLRFDRAAFSWPKDIVPTIGQ
Ga0307406_110279332	3300031901	Rhizosphere	MKYFGTVKSFDAIKGQGEIKPESGGDPIHFEKSAISWDKNVLPTVGQ
Ga0307407_104968681	3300031903	Rhizosphere	MKYFGTVKSFDTVQGHGEITQEAGGDDLRFEKSAISWDKDI
Ga0307412_114806801	3300031911	Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGNDLIRFSKSAIGWEKDRLPTVGQR
Ga0308175_1022423001	3300031938	Soil	MKYFGTVKSFDTIKGHGEIKPEVAGNDISFETKAIMWDKNVAPTIGQRLSYDV
Ga0310884_107319841	3300031944	Soil	MKLFGTVQSFDTIKGHGEIKPEVGSDLIRFEKSAIGWEKD
Ga0307409_1017685831	3300031995	Rhizosphere	MKLFGTVKSFDSVKGHGEITPEAGGELIRFDKSAIAWDKATPPTVGQ
Ga0307414_115238602	3300032004	Rhizosphere	MKLFGTVKSFDSVKGHGEITPEAGGELIRFDKSAIAWDKAVPP
Ga0307411_102653244	3300032005	Rhizosphere	MKLFGTVQSFDTIKGQGEIKPEVGSDLIHFEKSAIKWD
Ga0310890_100935581	3300032075	Soil	MKYFGTVKSFDTDKGIGALKPETGGDDLKFERNAISWDAPKSPNVG
Ga0310890_111086712	3300032075	Soil	MKLFGTVKSFDSAQGHGQITPEGGGDVIRFDKSAI
Ga0310895_102648321	3300032122	Soil	MKYFGTVKSFDVTQARGEIKQETGGNDLPFEKSAIQWDQNVDPTIGQRLSYDVGQTS
Ga0307415_1011606172	3300032126	Rhizosphere	MKHFGTVKSYDSVKGLGEISPEVGSDLIRFDKSAINWDKKTDPTI
Ga0307415_1022330432	3300032126	Rhizosphere	MKLFGTVQSFDTIKGHGEIKPEVGSDLIRFEKSAIAW
Ga0310889_1000001231	3300032179	Soil	MKYFGTVKSFDTIKGLGEIKPEAGGDMLRFERSAFSWDNDSVPTVGQR
Ga0310896_102355652	3300032211	Soil	MKYFGTVSSFDTIKGHGEIKPETGGDPLRFERAAVSWAENAAPTVGQRL
Ga0310810_110924521	3300033412	Soil	MKYFGTVSSFDTNKGHGEIKPETGGDMLRFERGAFSPENKAV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F040710

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences