Metagenome / Metatranscriptome Family F040091

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F040091
Family Type	Metagenome / Metatranscriptome
Number of Sequences	162
Average Sequence Length	51 residues
Representative Sequence	MFEYEYRSREQISREAAERYAHMEAVAARKAEAKRVRRQQRRSAVRAEPVQAR
Number of Associated Samples	131
Number of Associated Scaffolds	162

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	88.27 %
% of genes near scaffold ends (potentially truncated)	29.63 %
% of genes from short scaffolds (< 2000 bps)	80.25 %
Associated GOLD sequencing projects	122
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (52.469 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (30.864 % of family members)
Environment Ontology (ENVO)	Unclassified (30.247 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (35.185 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.32% β-sheet: 0.00% Coil/Unstructured: 45.68%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 162 Family Scaffolds
PF05872	HerA_C	38.27
PF03023	MurJ	7.41
PF13738	Pyr_redox_3	4.32
PF02080	TrkA_C	1.23
PF13399	LytR_C	1.23
PF10459	Peptidase_S46	0.62
PF13185	GAF_2	0.62
PF01996	F420_ligase	0.62
PF12900	Pyridox_ox_2	0.62
PF13561	adh_short_C2	0.62
PF02371	Transposase_20	0.62
PF01370	Epimerase	0.62
PF00155	Aminotran_1_2	0.62

COG ID	Name	Functional Category	% Frequency in 162 Family Scaffolds
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	38.27
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	7.41
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	7.41
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	7.41
COG1478	F420-0:Gamma-glutamyl ligase (F420 biosynthesis)	Coenzyme transport and metabolism [H]	0.62
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.62

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.47 %
Unclassified	root	N/A	47.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.47 %
Unclassified	root	N/A	47.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.47 %
Unclassified	root	N/A	47.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	41.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	29.63 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	5.56 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.32 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.23 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.62 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.32 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	1.85 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.23 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1.23 %
Dermacoccaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae	0.62 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.32 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.85 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1.23 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.23 %
Luteipulveratus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus	0.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.32 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.85 %
Mycobacterium tuberculosis complex	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex	1.23 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.23 %
Luteipulveratus mongoliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	0.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.62 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.53 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	4.32 %
Friedmanniella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	1.85 %
Mycobacterium tuberculosis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	1.23 %
Propionibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	1.23 %
Luteipulveratus mongoliensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	0.62 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.62 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2228664022\|INPgaii200_c0181864	Not Available	573	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10589916	Not Available	535	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13709646	Not Available	772	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_105580695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1237	Open in IMG/M
3300000550\|F24TB_10984275	Not Available	550	Open in IMG/M
3300000550\|F24TB_16715594	Not Available	500	Open in IMG/M
3300000789\|JGI1027J11758_11723851	Not Available	512	Open in IMG/M
3300000858\|JGI10213J12805_10136100	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300000891\|JGI10214J12806_11123681	Not Available	576	Open in IMG/M
3300000891\|JGI10214J12806_12046512	Not Available	717	Open in IMG/M
3300003373\|JGI25407J50210_10039974	Not Available	1202	Open in IMG/M
3300003911\|JGI25405J52794_10027094	All Organisms → cellular organisms → Bacteria	1179	Open in IMG/M
3300004114\|Ga0062593_100342438	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300004114\|Ga0062593_101126568	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	817	Open in IMG/M
3300004157\|Ga0062590_101720637	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300004463\|Ga0063356_100259315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2115	Open in IMG/M
3300004463\|Ga0063356_101199895	Not Available	1102	Open in IMG/M
3300004463\|Ga0063356_102102518	Not Available	857	Open in IMG/M
3300004479\|Ga0062595_100061391	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Dermacoccaceae → Luteipulveratus → Luteipulveratus mongoliensis	1790	Open in IMG/M
3300004643\|Ga0062591_102669116	Not Available	527	Open in IMG/M
3300005161\|Ga0066807_1042912	Not Available	518	Open in IMG/M
3300005338\|Ga0068868_100297976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1369	Open in IMG/M
3300005339\|Ga0070660_100080778	All Organisms → cellular organisms → Bacteria	2552	Open in IMG/M
3300005341\|Ga0070691_10204795	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300005345\|Ga0070692_10178284	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1230	Open in IMG/M
3300005347\|Ga0070668_100068873	All Organisms → cellular organisms → Bacteria	2752	Open in IMG/M
3300005441\|Ga0070700_100171336	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300005546\|Ga0070696_100503239	All Organisms → cellular organisms → Bacteria	964	Open in IMG/M
3300005614\|Ga0068856_100768878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	983	Open in IMG/M
3300005719\|Ga0068861_100014033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5618	Open in IMG/M
3300005937\|Ga0081455_10003540	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	17916	Open in IMG/M
3300005937\|Ga0081455_10047626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3711	Open in IMG/M
3300005937\|Ga0081455_10085034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2580	Open in IMG/M
3300005937\|Ga0081455_10587305	Not Available	729	Open in IMG/M
3300006058\|Ga0075432_10007200	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	3787	Open in IMG/M
3300006572\|Ga0074051_11482109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1868	Open in IMG/M
3300006575\|Ga0074053_11673949	Not Available	515	Open in IMG/M
3300006577\|Ga0074050_11538232	Not Available	619	Open in IMG/M
3300006581\|Ga0074048_10011588	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1662	Open in IMG/M
3300006844\|Ga0075428_100029244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae	6097	Open in IMG/M
3300006847\|Ga0075431_101889730	Not Available	553	Open in IMG/M
3300006852\|Ga0075433_10185774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1849	Open in IMG/M
3300006903\|Ga0075426_10112839	All Organisms → cellular organisms → Bacteria	1951	Open in IMG/M
3300006918\|Ga0079216_10698388	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300009094\|Ga0111539_12256376	Not Available	632	Open in IMG/M
3300009098\|Ga0105245_10735598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1022	Open in IMG/M
3300009147\|Ga0114129_10953629	Not Available	1083	Open in IMG/M
3300009156\|Ga0111538_12820139	Not Available	609	Open in IMG/M
3300009789\|Ga0126307_10299550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1293	Open in IMG/M
3300010036\|Ga0126305_10309481	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300010166\|Ga0126306_10073050	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2429	Open in IMG/M
3300010999\|Ga0138505_100002950	Not Available	1599	Open in IMG/M
3300010999\|Ga0138505_100065529	Not Available	535	Open in IMG/M
3300011400\|Ga0137312_1030439	Not Available	821	Open in IMG/M
3300012469\|Ga0150984_121911854	Not Available	724	Open in IMG/M
3300012475\|Ga0157317_1013208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	663	Open in IMG/M
3300012487\|Ga0157321_1003504	Not Available	937	Open in IMG/M
3300012897\|Ga0157285_10017218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1496	Open in IMG/M
3300012897\|Ga0157285_10030504	Not Available	1211	Open in IMG/M
3300012908\|Ga0157286_10166078	Not Available	716	Open in IMG/M
3300012937\|Ga0162653_100020054	Not Available	894	Open in IMG/M
3300012938\|Ga0162651_100063997	Not Available	597	Open in IMG/M
3300012938\|Ga0162651_100089439	Not Available	519	Open in IMG/M
3300012941\|Ga0162652_100005312	All Organisms → cellular organisms → Bacteria	1401	Open in IMG/M
3300012951\|Ga0164300_10137041	Not Available	1129	Open in IMG/M
3300012960\|Ga0164301_10522404	Not Available	861	Open in IMG/M
3300013307\|Ga0157372_11149681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	898	Open in IMG/M
3300015077\|Ga0173483_10002833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	5725	Open in IMG/M
3300015077\|Ga0173483_10509388	Not Available	643	Open in IMG/M
3300015371\|Ga0132258_10154538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5508	Open in IMG/M
3300015371\|Ga0132258_10199959	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4847	Open in IMG/M
3300015374\|Ga0132255_101670255	Not Available	966	Open in IMG/M
3300015374\|Ga0132255_103822279	Not Available	640	Open in IMG/M
3300017792\|Ga0163161_10253012	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1374	Open in IMG/M
3300017965\|Ga0190266_10054848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1431	Open in IMG/M
3300017965\|Ga0190266_10144170	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300017997\|Ga0184610_1256702	Not Available	580	Open in IMG/M
3300018000\|Ga0184604_10235900	Not Available	637	Open in IMG/M
3300018031\|Ga0184634_10190980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	930	Open in IMG/M
3300018051\|Ga0184620_10000298	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9195	Open in IMG/M
3300018051\|Ga0184620_10003537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	3120	Open in IMG/M
3300018051\|Ga0184620_10026948	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300018052\|Ga0184638_1035219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1810	Open in IMG/M
3300018054\|Ga0184621_10000048	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	18142	Open in IMG/M
3300018061\|Ga0184619_10198112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	923	Open in IMG/M
3300018061\|Ga0184619_10434708	Not Available	588	Open in IMG/M
3300018066\|Ga0184617_1029910	Not Available	1282	Open in IMG/M
3300018072\|Ga0184635_10409670	Not Available	512	Open in IMG/M
3300018073\|Ga0184624_10099972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1240	Open in IMG/M
3300018073\|Ga0184624_10122607	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1126	Open in IMG/M
3300018073\|Ga0184624_10161813	Not Available	988	Open in IMG/M
3300018075\|Ga0184632_10003397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	6641	Open in IMG/M
3300018082\|Ga0184639_10033482	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2624	Open in IMG/M
3300018465\|Ga0190269_11262538	Not Available	586	Open in IMG/M
3300018466\|Ga0190268_10637542	Not Available	766	Open in IMG/M
3300018469\|Ga0190270_11073748	Not Available	836	Open in IMG/M
3300018469\|Ga0190270_11959146	Not Available	643	Open in IMG/M
3300018469\|Ga0190270_13065107	Not Available	529	Open in IMG/M
3300018476\|Ga0190274_13922510	Not Available	504	Open in IMG/M
3300019254\|Ga0184641_1469979	Not Available	652	Open in IMG/M
3300019356\|Ga0173481_10736200	Not Available	537	Open in IMG/M
3300019362\|Ga0173479_10006436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2866	Open in IMG/M
3300019767\|Ga0190267_10080531	Not Available	1229	Open in IMG/M
3300019767\|Ga0190267_10127967	Not Available	1067	Open in IMG/M
3300019867\|Ga0193704_1078426	Not Available	609	Open in IMG/M
3300019869\|Ga0193705_1002436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4099	Open in IMG/M
3300019876\|Ga0193703_1012534	Not Available	1277	Open in IMG/M
3300019884\|Ga0193741_1083321	Not Available	822	Open in IMG/M
3300020005\|Ga0193697_1030638	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1343	Open in IMG/M
3300020005\|Ga0193697_1037081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1219	Open in IMG/M
3300020020\|Ga0193738_1013850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2597	Open in IMG/M
3300021078\|Ga0210381_10195590	Not Available	703	Open in IMG/M
3300021510\|Ga0222621_1021335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1302	Open in IMG/M
3300022195\|Ga0222625_1179028	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1096	Open in IMG/M
3300022195\|Ga0222625_1477925	All Organisms → cellular organisms → Bacteria	1686	Open in IMG/M
3300022898\|Ga0247745_1011026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1216	Open in IMG/M
3300023266\|Ga0247789_1031575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	928	Open in IMG/M
3300025904\|Ga0207647_10105160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1672	Open in IMG/M
3300025927\|Ga0207687_10996942	Not Available	718	Open in IMG/M
3300025933\|Ga0207706_10002083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	19570	Open in IMG/M
3300025937\|Ga0207669_10266097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1285	Open in IMG/M
3300025949\|Ga0207667_11908869	Not Available	556	Open in IMG/M
3300025961\|Ga0207712_10450990	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1091	Open in IMG/M
3300025972\|Ga0207668_10931838	Not Available	774	Open in IMG/M
3300026078\|Ga0207702_11344034	Not Available	708	Open in IMG/M
3300027873\|Ga0209814_10024473	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2467	Open in IMG/M
3300027907\|Ga0207428_10000747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	37176	Open in IMG/M
3300027909\|Ga0209382_10201918	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	2278	Open in IMG/M
3300028587\|Ga0247828_10223109	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	996	Open in IMG/M
3300028704\|Ga0307321_1031538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	962	Open in IMG/M
3300028705\|Ga0307276_10040367	Not Available	1004	Open in IMG/M
3300028708\|Ga0307295_10000538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	8117	Open in IMG/M
3300028710\|Ga0307322_10010387	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2049	Open in IMG/M
3300028712\|Ga0307285_10006940	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium tuberculosis complex → Mycobacterium tuberculosis	2348	Open in IMG/M
3300028712\|Ga0307285_10028556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1322	Open in IMG/M
3300028712\|Ga0307285_10205488	Not Available	552	Open in IMG/M
3300028715\|Ga0307313_10004554	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	3241	Open in IMG/M
3300028717\|Ga0307298_10137952	Not Available	705	Open in IMG/M
3300028744\|Ga0307318_10036234	Not Available	1619	Open in IMG/M
3300028754\|Ga0307297_10015240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2099	Open in IMG/M
3300028787\|Ga0307323_10008033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Friedmanniella	3496	Open in IMG/M
3300028791\|Ga0307290_10044789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1590	Open in IMG/M
3300028807\|Ga0307305_10444840	Not Available	584	Open in IMG/M
3300028809\|Ga0247824_10584980	Not Available	669	Open in IMG/M
3300028809\|Ga0247824_10918950	Not Available	548	Open in IMG/M
3300028819\|Ga0307296_10769612	Not Available	525	Open in IMG/M
3300028876\|Ga0307286_10002453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5433	Open in IMG/M
3300028880\|Ga0307300_10228158	Not Available	611	Open in IMG/M
3300028884\|Ga0307308_10063862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1736	Open in IMG/M
3300031058\|Ga0308189_10062710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1073	Open in IMG/M
3300031082\|Ga0308192_1052931	Not Available	613	Open in IMG/M
3300031091\|Ga0308201_10169825	Not Available	698	Open in IMG/M
3300031092\|Ga0308204_10161163	Not Available	673	Open in IMG/M
3300031184\|Ga0307499_10022679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1364	Open in IMG/M
3300031184\|Ga0307499_10270238	Not Available	550	Open in IMG/M
3300031740\|Ga0307468_100558780	Not Available	924	Open in IMG/M
3300031938\|Ga0308175_101529434	Not Available	746	Open in IMG/M
3300032002\|Ga0307416_103807685	Not Available	505	Open in IMG/M
3300032004\|Ga0307414_11254279	All Organisms → cellular organisms → Bacteria	687	Open in IMG/M
3300032012\|Ga0310902_10157059	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1294	Open in IMG/M
3300032174\|Ga0307470_11277896	Not Available	600	Open in IMG/M
3300032174\|Ga0307470_11617190	Not Available	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.22%
Host-Associated	Host-Associated	27.78%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	58.02%
Plants	Host-Associated → Plants	27.78%
Aquatic	Environmental → Aquatic	14.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.32%
Rhizosphere	Host-Associated → Plants → Rhizosphere	14.20%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.96%
Sediment	Environmental → Aquatic → Sediment	11.73%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.70%
Freshwater	Environmental → Aquatic → Freshwater	2.47%
Roots	Host-Associated → Plants → Roots	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.62%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	11.73%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	10.49%
Loam	Environmental → Terrestrial → Soil → Loam	3.70%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.70%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.47%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.62%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	11.73%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.49%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	10.49%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.94%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.09%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.47%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.47%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.47%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.23%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.62%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	30.86%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	10.49%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.94%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.09%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.09%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.09%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	2.47%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.47%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.47%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	2.47%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.23%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.23%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.23%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.23%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.23%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.23%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.23%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.62%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.62%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.62%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.62%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.62%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.62%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.62%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.62%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006577	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006581	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010999	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t3i015	Environmental	Open in IMG/M
3300011400	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT133_2	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012475	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.old.080610	Host-Associated	Open in IMG/M
3300012487	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.4.old.130510	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300017997	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coex	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019254	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300019867	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m1	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019884	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021510	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_coex	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028704	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_379	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028708	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_152	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028712	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139	Environmental	Open in IMG/M
3300028715	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_203	Environmental	Open in IMG/M
3300028717	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_158	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028791	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_144	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300028880	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031082	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_193 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPgaii200_01818642	2228664022	Soil	MFEHEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRAEPVQAR
ICChiseqgaiiFebDRAFT_105899162	3300000363	Soil	MFVQEHRPQQQISREAAKRFAIMVAITARKAAAKRVRQQRR*
ICChiseqgaiiFebDRAFT_137096463	3300000363	Soil	MSEQEYRPQQQINRETAERFAIMVAIVARKAEAKRVPQQRRAVRRARASVAKLA*
INPhiseqgaiiFebDRAFT_1055806951	3300000364	Soil	MFEHEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRAEPVQAR*
F24TB_109842751	3300000550	Soil	MFEQEYRPQEQISREAAERYAIMVAITARTAEAKRVRRQKRRSAVRAE
F24TB_167155942	3300000550	Soil	MFEYEYHSPEQISREAAEHYAQTAAVAARKAEAKRVRRQQR
JGI1027J11758_117238512	3300000789	Soil	MFEHEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQ
JGI10213J12805_101361003	3300000858	Soil	MFEQEYRSHQQISREAAERSAIMVALAERKAEAKRVRQRRRAVRKARSSVAESA*
JGI10214J12806_111236812	3300000891	Soil	MFETEYRSPEQISREAAERYTIMVAVAERKAETKRVREQRRRRVRAEPV
JGI10214J12806_120465122	3300000891	Soil	MFEQEYRPQQQISRQAAEHYAIMVAITASRANAKRVRRQRRAVRQARSSVAEAA*
JGI25407J50210_100399744	3300003373	Tabebuia Heterophylla Rhizosphere	MFEQEYRSQQQISREAAERSAIMVAIAARRAEVKRLRQQRRVVRRSRSSAAEPA*
JGI25405J52794_100270942	3300003911	Tabebuia Heterophylla Rhizosphere	MFEQEYRSREQISREAAERSAIMVAIAARKAEAKRVRKQKGRRVMRAEPVEAQ*
Ga0062593_1003424382	3300004114	Soil	MFEYEYRSREQISREAAEHYAHMEAVAARKAEAKHERRQQRRSAVRAEPVQAR*
Ga0062593_1011265683	3300004114	Soil	MFEQEYRPQQQISRQAAEHYAIMVAITASRANAKRVRRQRRAVRQ
Ga0062590_1017206372	3300004157	Soil	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPVQAR*
Ga0063356_1002593152	3300004463	Arabidopsis Thaliana Rhizosphere	MFETEYRSPEQISREAAERYAQMVAVAERKAEAKRVRQQKRRVVRAEPVEAQ*
Ga0063356_1011998952	3300004463	Arabidopsis Thaliana Rhizosphere	MFEQERRPQQQISREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTEPVEAR*
Ga0063356_1021025181	3300004463	Arabidopsis Thaliana Rhizosphere	MSEQEYRSQQQINREAAERFAIMVAIVARKAEAKRVPQQRRAVRRARASVAKPA*
Ga0062595_1000613912	3300004479	Soil	MFEQEQRPQQQVSREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTEPAEAR*
Ga0062591_1026691161	3300004643	Soil	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPVQ
Ga0066807_10429121	3300005161	Soil	MSEQENRSQQQIRREAAERFALMVAIVVRQAEANGVRKQRRAGRRARASVAKP
Ga0068868_1002979761	3300005338	Miscanthus Rhizosphere	EQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR*
Ga0070660_1000807782	3300005339	Corn Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTEPAEAR*
Ga0070691_102047951	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MFEHEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR*
Ga0070692_101782843	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MFEHEYRSGEQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR*
Ga0070668_1000688733	3300005347	Switchgrass Rhizosphere	MFEYEYRSGEQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR*
Ga0070700_1001713363	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MFEYEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR*
Ga0070696_1005032391	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTETAEAR*
Ga0068856_1007688782	3300005614	Corn Rhizosphere	EYRSREQISREAAEHYAQMEAVAAHRAEAKRERRQQRRSAVRAEPVQAR*
Ga0068861_1000140331	3300005719	Switchgrass Rhizosphere	MLEYEYRSREQISREAAEHYAQMEAVAARKAEAKRE
Ga0081455_1000354023	3300005937	Tabebuia Heterophylla Rhizosphere	MFEQEYRSQEQISREAAERFALMVAIAARKAEAKQVRQQKRRSAMRAEPVEAQ*
Ga0081455_100476265	3300005937	Tabebuia Heterophylla Rhizosphere	MFEQEYRPREQISREAAERYAIMVAITARKAEAKRVRRQKRRSAVRAEPVKAQ*
Ga0081455_100850344	3300005937	Tabebuia Heterophylla Rhizosphere	MFEQEYRSREQISREAAERYAIMVAITARKAEAKRVRKQKGRRRVMQAEPVEAQ*
Ga0081455_105873052	3300005937	Tabebuia Heterophylla Rhizosphere	MFEYEYRSPEQISREAAERSAQVGAIAERKAEAKRVRRQQRRSAVQAEPVTAR*
Ga0075432_100072004	3300006058	Populus Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRHRRRSAMRTEPAEAR*
Ga0074051_114821093	3300006572	Soil	MFEQENRSQQQIRREAAERFALMVAIVVRQAEANGVRKQRRAGRRARASVAKPA*
Ga0074053_116739491	3300006575	Soil	MFEQEQRPQHQISREAAERYAIMVAIAARKAEAKQVRQQRRRRAMRAEPV
Ga0074050_115382321	3300006577	Soil	MFEQEYRPQQQISREAAERFAIMVVIATRKAQTKRVRPQRRAVRRARASVAKPA*
Ga0074048_100115884	3300006581	Soil	MFEQEQRPQHQISREAAERYAIMVAIAARKAEAKQVRQQRRRRAMRAEPVEAR*
Ga0075428_1000292444	3300006844	Populus Rhizosphere	MFEYEYRPQEQISREAAERSAIMVAIAARRAEAKRVRQQKRGSAVRAEPVKAQ*
Ga0075431_1018897302	3300006847	Populus Rhizosphere	MFEYEYRPQEQISREAAERCAIMVAIAARRAEAKRVRQQKRGSAVRAEPVKAQ*
Ga0075433_101857741	3300006852	Populus Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRR
Ga0075426_101128392	3300006903	Populus Rhizosphere	MFEQEQRPQQQISREAAERFAVMVAIAARKAETKRVRRQRRRSAMRTETADAR*
Ga0079216_106983882	3300006918	Agricultural Soil	MFEQEYRSHQQISREAAERSAIRVAIAERKAEAKRVRQQRRAARKARSSVAEPA*
Ga0111539_122563761	3300009094	Populus Rhizosphere	MFEYEYRPQEQISREAAERSAIMVAIAERRAEAMRVRQQKRGSAVHAELVKAQ*
Ga0105245_107355981	3300009098	Miscanthus Rhizosphere	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPAQAR*
Ga0114129_109536293	3300009147	Populus Rhizosphere	MFEYEYRPQEQISREAAERSAIMVAIAERRAEAMRVRQQKRGSAVRAEPVEAQ*
Ga0111538_128201391	3300009156	Populus Rhizosphere	MFEYEYRPQEQISREAAERFAIMVAIAARRAEAKRVRQQKRGSAVRAEPVKAQ*
Ga0126307_102995502	3300009789	Serpentine Soil	MFEQEYRSHRQISRETAEHSAIMVAIAERKAEAKRVRQQRRAARKARSSVAEPA*
Ga0126305_103094811	3300010036	Serpentine Soil	MLEQEYRSHRQISREAAERSAIMVAIAERRAEAKRVHQQRRAARKARSSVAEPA*
Ga0126306_100730501	3300010166	Serpentine Soil	MFEQEHRSHRQISREAAEHSAIMVAIAERKAEAKRVRQQRRAARKARSSVAEPA*
Ga0138505_1000029502	3300010999	Soil	MFEHEYRSPEQISREAAEHYAQTAAVAARKAEAKRVRRQQRRSVRQFRESVAKA*
Ga0138505_1000655292	3300010999	Soil	MREQLLERKTAMFEQEYRPQQQISREAAERFAIMVAITARKAEAKRVRKQKRRRAVRAEPVKAQ*
Ga0137312_10304392	3300011400	Soil	MFEHEYRPQQQISREAAERYALMVAIVVRNAEAKRVRQRRRVFRRARSSVAKPA*
Ga0150984_1219118541	3300012469	Avena Fatua Rhizosphere	MFEHEYRSPEQVSREAAERYTQMMAVAARKAEAERVRRKRRRTVRAEPVEAR*
Ga0157317_10132081	3300012475	Arabidopsis Rhizosphere	EYRSPEQISREAAEHYAQMEAVAARKAEAKRVRRQQRRSAVRAEPVQAR*
Ga0157321_10035042	3300012487	Arabidopsis Rhizosphere	MFEYEYRSREQISREAAERYAHMEAVAARKAEAKRVRRQQRRSAVRAEPVQAR*
Ga0157285_100172182	3300012897	Soil	MFEQEYRPQQQISRQAAEHYAIMVAMTASRANAKRVRRQRRAVRQARSSVAEAA*
Ga0157285_100305043	3300012897	Soil	MFEQEYRPQQQISREAAERYTIMVAITARRAQAKRVRRQRRAVRQ
Ga0157286_101660781	3300012908	Soil	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRA
Ga0162653_1000200542	3300012937	Soil	MFEQEYRPQQQISREAAERYTIMVAITARRAEAKRVRRQRRAVRQTRASAAEAA*
Ga0162651_1000639972	3300012938	Soil	MFEQEYRSQEQISREAAERFAIMVAITARKAEAKRVRKQKRRRAVRAEPVKAQ*
Ga0162651_1000894391	3300012938	Soil	MFDDEHRPRQQVSREAAERYALMVAIAVRKAEAKRVRQRRRVFRRARASVAKPA*
Ga0162652_1000053122	3300012941	Soil	MFDDEYRPRQQVSREAAERYALMVAIAVRKAPAKRVRQQRRAVRRARASVAKPA*
Ga0164300_101370412	3300012951	Soil	MFEHEYRSREQVSREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPVQAR*
Ga0164301_105224042	3300012960	Soil	MNKEIAMFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPVQAR*
Ga0157372_111496811	3300013307	Corn Rhizosphere	QQISREAAERFAIMVAIAARKTETKRVRRQRRRSAMRTEPVEAR*
Ga0173483_100028333	3300015077	Soil	MFEQEYRPQQQISRQAAEHYAIMVAITASRANAKRVRRQRRAVRQAPSSVAEAA*
Ga0173483_105093881	3300015077	Soil	MFEYEYRSPEQISREAAEHYAHVMAIAQRKAEAKRERHQRRRSAIRAEPVQAR*
Ga0132258_101545382	3300015371	Arabidopsis Rhizosphere	MFEHEYRSPEQISREAAEHYAQVAAVAASKAEAKRVRRQQRRRAVQAEPVAAR*
Ga0132258_101999591	3300015371	Arabidopsis Rhizosphere	MFEYEYRSPEQISREAAEHYAHVMAIAERKAEAKRERHQRRRSAIRAEPVQAR*
Ga0132255_1016702551	3300015374	Arabidopsis Rhizosphere	MFEYEYRSPEQISREAAEHYAHVMALAERKAEAKRERHQRRRSAIRAE
Ga0132255_1038222791	3300015374	Arabidopsis Rhizosphere	MFEHEYRSPEQISREAAEHYAQVAAVAASKAEAKRVRRQQRRRA
Ga0163161_102530122	3300017792	Switchgrass Rhizosphere	MFEHEYRSGEQISREAAEQYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0190266_100548482	3300017965	Soil	MFEHEYRPQQQISREAAERYALMVAIVVRKAEAKRVRQRRRVFRRARSSVAKPA
Ga0190266_101441702	3300017965	Soil	MFEQEYRPQQQISREAAERFAIMVAITARKAEAKRVRKQKRRRAVRAEPVKAQ
Ga0184610_12567022	3300017997	Groundwater Sediment	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPVEAR
Ga0184604_102359001	3300018000	Groundwater Sediment	MFEQEYRPQQQISREAAERYTITVAITAGRAEAKRVRRQRRAVRQTRSSAAEAA
Ga0184634_101909802	3300018031	Groundwater Sediment	MFDDEYRRQQQVRREAAERYALMVAIAVRKAPAKRVRQQRRGVRRARASVAKPA
Ga0184620_100002986	3300018051	Groundwater Sediment	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQGRSAVRAEPVEAR
Ga0184620_100035373	3300018051	Groundwater Sediment	MFEQEHCPQQQISREAAERYASTVAVTARRAEAKRVRRQRRAVRQTRSSAAEAA
Ga0184620_100269481	3300018051	Groundwater Sediment	MFEYEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0184638_10352192	3300018052	Groundwater Sediment	MFEQENRPQQQISREAAERYALMVAIVARKPQAKPLRQQRRAVRRTRASVAKPAR
Ga0184621_1000004820	3300018054	Groundwater Sediment	MFDDEYRRQQQVRREAAERYALMVAIAVRKAPAKRVR
Ga0184619_101981122	3300018061	Groundwater Sediment	MFEQEHRPQQQISREAAERYAITVAVTARRAEAKSVRRQRRAVRQTRSSAAEAA
Ga0184619_104347081	3300018061	Groundwater Sediment	MSEQEYRPQQQINREAAKRYAIMVAITARKAEAKRVRRQRRAVRQTRSSAAEAA
Ga0184617_10299101	3300018066	Groundwater Sediment	MFEQEYRSQQQISREAAEHYAIMAAITARRAEAKRVRRQRRAVRQARSAAAETA
Ga0184635_104096701	3300018072	Groundwater Sediment	MFEQEFRPQEQISREAAERFAIMVAITARKAEAKRVRQQKRRGAMRAKPVEAH
Ga0184624_100999723	3300018073	Groundwater Sediment	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRR
Ga0184624_101226071	3300018073	Groundwater Sediment	MFEQEHRPQQQISREAAERYAITVAVTARRAEAKRVRRQRRAVRQTRSSAAEAA
Ga0184624_101618131	3300018073	Groundwater Sediment	MFEQEFRPQEQISREAAERFAIMVAITVRKAEAKRVRQQKRRGAMRAKPVEAH
Ga0184632_100033976	3300018075	Groundwater Sediment	MFEQENRPQQQISREAAERYALMVAIVARKAQAKPLRQQRRAVRRTRASVAKPAR
Ga0184639_100334821	3300018082	Groundwater Sediment	MFDDEYRRQQQVRREAAERYALMVAIAVRKAPAKRVRRQRRGVRR
Ga0190269_112625381	3300018465	Soil	MFEHEYRSPEQISREAAEHYAQTAAVAARKAEVKRVRQQ
Ga0190268_106375422	3300018466	Soil	MFEQEYRPQQQISREAAERFAIMVALTARRAEAKRVRQRRRAVRQARSSAAEAA
Ga0190270_110737481	3300018469	Soil	MLEHEYRPQQQISREAAERYALMVAIAVRKAEAKRVSPRRRV
Ga0190270_119591461	3300018469	Soil	MFEHEYRPQQQISREAAERYALMVAIAVRKAEAKRVRQRRRVGRRARASVAKPA
Ga0190270_130651071	3300018469	Soil	HEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRRAVRAVPVEAR
Ga0190274_139225101	3300018476	Soil	MFEQEHRPQQQISREAAERYAVMVAIAARKAGAKRVRQRRRAVRRARASVAKPA
Ga0184641_14699792	3300019254	Groundwater Sediment	MFEQEYRSQQQISREAAEHYAVMAAITARRAEAKRVRRQRRAVRQARSAAAETA
Ga0173481_107362001	3300019356	Soil	MFEYEYRSPEQISREAAEHYAHVMAIAQRKAEAKRERHQRRRSAIRAEPVQAR
Ga0173479_100064362	3300019362	Soil	MFEQEYRPQQQISRQAAEHYAIMVAITASRANAKRVRRQRRAVRQARSSVAEAA
Ga0190267_100805313	3300019767	Soil	MFEQEYRPQQQISREAAERFAIMVAITARKAEAKRVRRQKRRRAVRAEPVKAQ
Ga0190267_101279671	3300019767	Soil	MFEHEYRPQQQISREAAERYALMVAIVVRKAEAKRVRQRRRVGRRARASVAKPA
Ga0193704_10784261	3300019867	Soil	MFEYEYRSREQISREAAEHYAHMEAVAARKAEAKHERRQQRRSAVRTEPVQAR
Ga0193705_10024361	3300019869	Soil	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPV
Ga0193703_10125342	3300019876	Soil	MFEHEYRSPDQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPVEAR
Ga0193741_10833212	3300019884	Soil	MLEHEYRPQQQISREAAERYALMVAIAVRKAEAKRVRQRRRVGRRARASVAKPA
Ga0193697_10306384	3300020005	Soil	MFEYEYRSREQISREAAEHYAQMEAVAGRKAEAKRERRQQRRSAVRTEPVQAR
Ga0193697_10370812	3300020005	Soil	MLEHEYRPQQQISREAAERYALMVAIAVRKAEAKRVRQRRRFFRRARASVAKPA
Ga0193738_10138502	3300020020	Soil	MFEHEYRPQQQISREAAERYALMVAIAVRKAEAKRVRQRRRVFRRARSSVAKPA
Ga0210381_101955902	3300021078	Groundwater Sediment	SLICKGKFAMFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPVEA
Ga0222621_10213352	3300021510	Groundwater Sediment	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRRAVRAEPVEAR
Ga0222625_11790282	3300022195	Groundwater Sediment	MFEYEYRSREQISREAAEHYAQMEAVAARKAEAKGERRQQRRSAVRTEPVQAR
Ga0222625_14779252	3300022195	Groundwater Sediment	MFEQENRPQQQISREAAERYALLVAIVARKAQAKPVRQQRRAVRRTRASVAKPAR
Ga0247745_10110261	3300022898	Soil	AMFEQEYRPQQQISRQAAEHYAIMVAITASRANAKRVRRQRRAVRQAPSSVAEAA
Ga0247789_10315752	3300023266	Soil	ETEYRSPEQISREAAERYTIMVAVAERKAETKRVREQRRRRVRAEPVEAS
Ga0207647_101051602	3300025904	Corn Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTEPAEAR
Ga0207687_109969422	3300025927	Miscanthus Rhizosphere	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSAVRAEPAQAR
Ga0207706_100020835	3300025933	Corn Rhizosphere	MFEHEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0207669_102660972	3300025937	Miscanthus Rhizosphere	MFEHEYRSGEQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0207667_119088691	3300025949	Corn Rhizosphere	EYEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0207712_104509901	3300025961	Switchgrass Rhizosphere	GKFAMFEYEYRSREQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0207668_109318382	3300025972	Switchgrass Rhizosphere	MFEYEYRSGEQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0207702_113440342	3300026078	Corn Rhizosphere	MFEYEYRSREQISREAAEHYAQMEAVAAHRAEAKRERRQQRRSAVRAEPVQAR
Ga0209814_100244734	3300027873	Populus Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRHRRRS
Ga0207428_1000074721	3300027907	Populus Rhizosphere	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRHRRRSAMRTEPAEAR
Ga0209382_102019181	3300027909	Populus Rhizosphere	MFEYEYRPQEQISREAAERSAIMVAIAERRAEAMRVRQQKRGSAVRAELVKAQ
Ga0247828_102231093	3300028587	Soil	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRQQRRRSAMRTE
Ga0307321_10315382	3300028704	Soil	MFEYEYRSREQISREAAEHYAHMEAVAARKAEEKHERRQQRRSAARTEPVQAR
Ga0307276_100403672	3300028705	Soil	MFEYEYRSPEQISREAAEHYAHVMAIAERKAEAKRERRQRRRSAIRAEPVQAR
Ga0307295_100005381	3300028708	Soil	KTAMFEQEHRPQQQISREAAERYAITVAVTARRAEAKRVRRQRRAVRQTRSSAAEAA
Ga0307322_100103871	3300028710	Soil	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRRAVRAE
Ga0307285_100069402	3300028712	Soil	MFEQEHRPQQQISREAAERYAITVAVTARRAEAKRVRRQRRAVRQPRSSAAEAA
Ga0307285_100285562	3300028712	Soil	EYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPVEAR
Ga0307285_102054881	3300028712	Soil	MFEHEYRSPEQISREAAEHYAQTAAVAARKAEAKRVRRQQRRSVRQFRESVAKA
Ga0307313_100045544	3300028715	Soil	QVRREAAERYALMVAIAVRKAPAKRVRQQRRAVRRARASVAKPA
Ga0307298_101379522	3300028717	Soil	MFEYEYRSREQISREAAEHYAQMEAVAARKAEAKHERRQQRRSAVRTEPVQAR
Ga0307318_100362342	3300028744	Soil	MFEQEYRPQQQISREAAERYTITVAITARRAEAKRVRRQRRAVRQTRASAAEAA
Ga0307297_100152401	3300028754	Soil	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAE
Ga0307323_100080336	3300028787	Soil	SPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRSAVRAEPVEAR
Ga0307290_100447893	3300028791	Soil	MFEQEHRPQQQISREAAERYAITVAVTARRAEAKRVRRQRRAVRQTRSSAAEA
Ga0307305_104448401	3300028807	Soil	MFEQEFRPQEQISREAAERFAIMVAITARKAEAKRERQQKRRGAMRAKPVEAH
Ga0247824_105849801	3300028809	Soil	MFEHEYRSREQISREAAEHYAQTEAVAARKAEAKRERRQQRRSAVRAEPVQAH
Ga0247824_109189502	3300028809	Soil	MFEQEQRPQQQISREAAERFAIMVAIAARKAETKRV
Ga0307296_107696121	3300028819	Soil	MSEQENRSQQQIRREAAERFALMVAIVVRQAEANGVRKQRRAGRRARASVAKPA
Ga0307286_100024532	3300028876	Soil	MFEQEHRPQQQISREAAERYAITVAVTARSAEAKRVRRQRRAVRQTRSSAAEAA
Ga0307300_102281582	3300028880	Soil	MFEQEHRPQQQISREAAERYTITVAITARRAEAKRVRRQRRAVRQTRASAAEAA
Ga0307308_100638624	3300028884	Soil	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVRRQRRRA
Ga0308189_100627103	3300031058	Soil	MFEHEYRSPEQVSREAAERYAQMVAVAARKAEAQRVLRQRRSAVRAEPVEAR
Ga0308192_10529311	3300031082	Soil	MFEHEYRSREQVSREAAEHYAQMEAVAARKAEAKRERRQQRRSTVRTEPVQAH
Ga0308201_101698252	3300031091	Soil	MFEYEYRSREQISREAAVHYAHMEAVAARKAEAKHERRQQRRSAVRTEPVQAR
Ga0308204_101611632	3300031092	Soil	MFEQEYRPQQQISREAAERYTIMVAVTARRAEAKRVRRQRRAVRQTRASAAEAA
Ga0307499_100226791	3300031184	Soil	EQISREAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0307499_102702381	3300031184	Soil	MFEHEYRSREQISREAAEHYAQMEAVAAHKAEAKRERRQQRRSTVRTEPVQAR
Ga0307468_1005587802	3300031740	Hardwood Forest Soil	MFEHEYRSREQISREAAEHYAHMEAVAALKAEAKRVRRQQRRSAVRAEPVEARY
Ga0308175_1015294342	3300031938	Soil	MFEYEYRSPEQISREAAEHYAHVMAIAERKAEAKRERHQRRRSAIRAE
Ga0307416_1038076851	3300032002	Rhizosphere	MFEQEYRSHRQISREAAERSAIMVAIAERKAEAKRVRQQRR
Ga0307414_112542792	3300032004	Rhizosphere	MFEQEYRSHQQISREAAERSAIRVAIAERKAEAKRVRQQRRAARKARSSVAEPA
Ga0310902_101570591	3300032012	Soil	RPHHLLVKEIVMFEQEQRPQQQISREAAERFAIMVAIAARKAETKRVRRQRRRSAMRTEPAEAR
Ga0307470_112778962	3300032174	Hardwood Forest Soil	EAAEHYAQMEAVAARKAEAKRERRQQRRSAVRTEPVQAR
Ga0307470_116171901	3300032174	Hardwood Forest Soil	MFEHEYRSREQISREAAEHYAHMEAVAALKAEAKRVRRQQRRSAVRAEPVEAR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F040091

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences