NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F039718

Metagenome / Metatranscriptome Family F039718

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F039718
Family Type Metagenome / Metatranscriptome
Number of Sequences 163
Average Sequence Length 43 residues
Representative Sequence MTRIAVSRRNLLATGACALVGAVSLPGPASASALGGQNLTNEEV
Number of Associated Samples 123
Number of Associated Scaffolds 163

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 99.39 %
% of genes near scaffold ends (potentially truncated) 98.16 %
% of genes from short scaffolds (< 2000 bps) 90.80 %
Associated GOLD sequencing projects 115
AlphaFold2 3D model prediction Yes
3D model pTM-score0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (90.184 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(28.834 % of family members)
Environment Ontology (ENVO) Unclassified
(39.877 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(63.804 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 37.50%    β-sheet: 0.00%    Coil/Unstructured: 62.50%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.30
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 163 Family Scaffolds
PF16925TetR_C_13 66.26
PF13977TetR_C_6 4.29
PF00440TetR_N 2.45
PF13620CarboxypepD_reg 1.84
PF11949DUF3466 1.23
PF08240ADH_N 0.61
PF13564DoxX_2 0.61
PF03795YCII 0.61
PF00078RVT_1 0.61
PF00326Peptidase_S9 0.61
PF14534DUF4440 0.61
PF04397LytTR 0.61
PF00578AhpC-TSA 0.61
PF01850PIN 0.61
PF03372Exo_endo_phos 0.61

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 163 Family Scaffolds
COG2350YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHisSecondary metabolites biosynthesis, transport and catabolism [Q] 0.61


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms90.18 %
UnclassifiedrootN/A9.82 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001082|JGI12664J13189_1010346All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300001356|JGI12269J14319_10104523Not Available1374Open in IMG/M
3300002245|JGIcombinedJ26739_100989201All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli725Open in IMG/M
3300002245|JGIcombinedJ26739_101349607Not Available605Open in IMG/M
3300002917|JGI25616J43925_10377081All Organisms → cellular organisms → Bacteria → Acidobacteria523Open in IMG/M
3300004137|Ga0058883_1499615Not Available528Open in IMG/M
3300004152|Ga0062386_101692205All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300004152|Ga0062386_101808016All Organisms → cellular organisms → Bacteria → Acidobacteria510Open in IMG/M
3300004479|Ga0062595_101760422All Organisms → cellular organisms → Bacteria → Acidobacteria586Open in IMG/M
3300005167|Ga0066672_10755978Not Available616Open in IMG/M
3300005437|Ga0070710_10129886Not Available1535Open in IMG/M
3300005437|Ga0070710_10256096All Organisms → cellular organisms → Bacteria → Acidobacteria1127Open in IMG/M
3300005591|Ga0070761_10543064All Organisms → cellular organisms → Bacteria → Acidobacteria720Open in IMG/M
3300005598|Ga0066706_10072818All Organisms → cellular organisms → Bacteria → Proteobacteria2410Open in IMG/M
3300005602|Ga0070762_10049335All Organisms → cellular organisms → Bacteria2315Open in IMG/M
3300005712|Ga0070764_10535553All Organisms → cellular organisms → Bacteria → Acidobacteria708Open in IMG/M
3300005921|Ga0070766_10289838All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae1049Open in IMG/M
3300005921|Ga0070766_11297237All Organisms → cellular organisms → Bacteria → Acidobacteria505Open in IMG/M
3300005995|Ga0066790_10454331All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300006162|Ga0075030_100840099All Organisms → cellular organisms → Bacteria → Acidobacteria725Open in IMG/M
3300006176|Ga0070765_101227433All Organisms → cellular organisms → Bacteria → Acidobacteria708Open in IMG/M
3300006176|Ga0070765_101628720All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300006804|Ga0079221_10325137All Organisms → cellular organisms → Bacteria → Acidobacteria915Open in IMG/M
3300006854|Ga0075425_101704346All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300006893|Ga0073928_10021825All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia6538Open in IMG/M
3300006893|Ga0073928_10713333All Organisms → cellular organisms → Bacteria → Acidobacteria699Open in IMG/M
3300006893|Ga0073928_11131123All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria529Open in IMG/M
3300006893|Ga0073928_11172023All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300009038|Ga0099829_10996053All Organisms → cellular organisms → Bacteria → Acidobacteria695Open in IMG/M
3300009628|Ga0116125_1179633All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300009650|Ga0105857_1019154All Organisms → cellular organisms → Bacteria → Acidobacteria1823Open in IMG/M
3300009665|Ga0116135_1246501All Organisms → cellular organisms → Bacteria → Acidobacteria693Open in IMG/M
3300009764|Ga0116134_1337011All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300010047|Ga0126382_10375446Not Available1100Open in IMG/M
3300010048|Ga0126373_11042463All Organisms → cellular organisms → Bacteria → Acidobacteria884Open in IMG/M
3300010048|Ga0126373_12700603All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300010159|Ga0099796_10576577Not Available506Open in IMG/M
3300011120|Ga0150983_11697659All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1196Open in IMG/M
3300011269|Ga0137392_11127832All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300011271|Ga0137393_11104422All Organisms → cellular organisms → Bacteria → Acidobacteria674Open in IMG/M
3300012096|Ga0137389_10488851Not Available1055Open in IMG/M
3300012207|Ga0137381_10174901All Organisms → cellular organisms → Bacteria → Proteobacteria1855Open in IMG/M
3300012210|Ga0137378_10183113All Organisms → cellular organisms → Bacteria → Proteobacteria1948Open in IMG/M
3300012210|Ga0137378_10319972All Organisms → cellular organisms → Bacteria → Acidobacteria1443Open in IMG/M
3300012361|Ga0137360_10637237All Organisms → cellular organisms → Bacteria → Acidobacteria913Open in IMG/M
3300012918|Ga0137396_10850396All Organisms → cellular organisms → Bacteria → Acidobacteria670Open in IMG/M
3300012924|Ga0137413_10460499All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium927Open in IMG/M
3300012927|Ga0137416_11816980All Organisms → cellular organisms → Bacteria → Acidobacteria557Open in IMG/M
3300012944|Ga0137410_11978906All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300012961|Ga0164302_10468764All Organisms → cellular organisms → Bacteria → Acidobacteria880Open in IMG/M
3300014155|Ga0181524_10098774All Organisms → cellular organisms → Bacteria → Acidobacteria1637Open in IMG/M
3300014501|Ga0182024_10115482All Organisms → cellular organisms → Bacteria3858Open in IMG/M
3300015374|Ga0132255_101553185All Organisms → cellular organisms → Bacteria → Acidobacteria1002Open in IMG/M
3300016404|Ga0182037_10464086All Organisms → cellular organisms → Bacteria → Acidobacteria1055Open in IMG/M
3300017933|Ga0187801_10376642All Organisms → cellular organisms → Bacteria → Acidobacteria587Open in IMG/M
3300017942|Ga0187808_10517707All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300017975|Ga0187782_11341466All Organisms → cellular organisms → Bacteria → Acidobacteria562Open in IMG/M
3300018047|Ga0187859_10376478All Organisms → cellular organisms → Bacteria → Acidobacteria777Open in IMG/M
3300018085|Ga0187772_10639216Not Available759Open in IMG/M
3300020070|Ga0206356_10608872Not Available612Open in IMG/M
3300020199|Ga0179592_10029770All Organisms → cellular organisms → Bacteria → Proteobacteria2458Open in IMG/M
3300020199|Ga0179592_10109476All Organisms → cellular organisms → Bacteria → Acidobacteria1268Open in IMG/M
3300020579|Ga0210407_10027521All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium4228Open in IMG/M
3300020579|Ga0210407_10273487All Organisms → cellular organisms → Bacteria → Acidobacteria1317Open in IMG/M
3300020581|Ga0210399_10122070All Organisms → cellular organisms → Bacteria → Proteobacteria2141Open in IMG/M
3300020581|Ga0210399_10924940All Organisms → cellular organisms → Bacteria → Acidobacteria706Open in IMG/M
3300020582|Ga0210395_10748446All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → Granulicella arctica730Open in IMG/M
3300020582|Ga0210395_10918589All Organisms → cellular organisms → Bacteria → Acidobacteria650Open in IMG/M
3300020582|Ga0210395_11307897All Organisms → cellular organisms → Bacteria → Acidobacteria530Open in IMG/M
3300020583|Ga0210401_10772020Not Available821Open in IMG/M
3300020583|Ga0210401_11575020All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
3300021170|Ga0210400_10498179All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1006Open in IMG/M
3300021180|Ga0210396_10324037All Organisms → cellular organisms → Bacteria → Acidobacteria1361Open in IMG/M
3300021401|Ga0210393_10016198All Organisms → cellular organisms → Bacteria5772Open in IMG/M
3300021401|Ga0210393_10516665All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli975Open in IMG/M
3300021401|Ga0210393_10807853All Organisms → cellular organisms → Bacteria → Acidobacteria763Open in IMG/M
3300021401|Ga0210393_11221549All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300021401|Ga0210393_11342655All Organisms → cellular organisms → Bacteria → Acidobacteria572Open in IMG/M
3300021402|Ga0210385_10729532All Organisms → cellular organisms → Bacteria → Acidobacteria759Open in IMG/M
3300021404|Ga0210389_10644781All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300021404|Ga0210389_10929393All Organisms → cellular organisms → Bacteria → Acidobacteria676Open in IMG/M
3300021405|Ga0210387_11167877All Organisms → cellular organisms → Bacteria → Acidobacteria669Open in IMG/M
3300021405|Ga0210387_11791778All Organisms → cellular organisms → Bacteria → Acidobacteria518Open in IMG/M
3300021407|Ga0210383_11413219All Organisms → cellular organisms → Bacteria → Acidobacteria578Open in IMG/M
3300021432|Ga0210384_10256716All Organisms → cellular organisms → Bacteria → Acidobacteria1573Open in IMG/M
3300021432|Ga0210384_11615030All Organisms → cellular organisms → Bacteria → Acidobacteria554Open in IMG/M
3300021433|Ga0210391_10141290All Organisms → cellular organisms → Bacteria1896Open in IMG/M
3300021433|Ga0210391_10560634All Organisms → cellular organisms → Bacteria → Acidobacteria897Open in IMG/M
3300021433|Ga0210391_10822907All Organisms → cellular organisms → Bacteria → Acidobacteria725Open in IMG/M
3300021474|Ga0210390_11567395All Organisms → cellular organisms → Bacteria → Acidobacteria519Open in IMG/M
3300021477|Ga0210398_11488363All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300021478|Ga0210402_10026200All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli5023Open in IMG/M
3300021478|Ga0210402_10390791All Organisms → cellular organisms → Bacteria → Acidobacteria1291Open in IMG/M
3300021478|Ga0210402_11434468All Organisms → cellular organisms → Bacteria → Acidobacteria618Open in IMG/M
3300021479|Ga0210410_11357488Not Available603Open in IMG/M
3300021479|Ga0210410_11585363All Organisms → cellular organisms → Bacteria → Acidobacteria548Open in IMG/M
3300021559|Ga0210409_11500834All Organisms → cellular organisms → Bacteria → Acidobacteria550Open in IMG/M
3300021560|Ga0126371_11508759All Organisms → cellular organisms → Bacteria → Acidobacteria800Open in IMG/M
3300022527|Ga0242664_1031409All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli895Open in IMG/M
3300022530|Ga0242658_1049574All Organisms → cellular organisms → Bacteria → Acidobacteria884Open in IMG/M
3300022530|Ga0242658_1237299All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300022533|Ga0242662_10038157All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1192Open in IMG/M
3300022533|Ga0242662_10314665All Organisms → cellular organisms → Bacteria → Acidobacteria525Open in IMG/M
3300022557|Ga0212123_10844249All Organisms → cellular organisms → Bacteria → Acidobacteria545Open in IMG/M
3300022557|Ga0212123_10949152All Organisms → cellular organisms → Bacteria → Acidobacteria502Open in IMG/M
3300022714|Ga0242671_1024896All Organisms → cellular organisms → Bacteria → Acidobacteria864Open in IMG/M
3300022717|Ga0242661_1029433All Organisms → cellular organisms → Bacteria → Acidobacteria937Open in IMG/M
3300022724|Ga0242665_10092604All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli884Open in IMG/M
3300022726|Ga0242654_10201279All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300022733|Ga0224562_1021957All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300024225|Ga0224572_1032967All Organisms → cellular organisms → Bacteria → Acidobacteria986Open in IMG/M
3300025812|Ga0208457_1045752All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli936Open in IMG/M
3300026294|Ga0209839_10011886All Organisms → cellular organisms → Bacteria → Acidobacteria3605Open in IMG/M
3300026325|Ga0209152_10077918All Organisms → cellular organisms → Bacteria → Acidobacteria1214Open in IMG/M
3300026514|Ga0257168_1026032All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1233Open in IMG/M
3300026557|Ga0179587_10186268All Organisms → cellular organisms → Bacteria → Acidobacteria1309Open in IMG/M
3300026557|Ga0179587_10517869All Organisms → cellular organisms → Bacteria → Acidobacteria783Open in IMG/M
3300027173|Ga0208097_1013229All Organisms → cellular organisms → Bacteria → Acidobacteria907Open in IMG/M
3300027548|Ga0209523_1034274Not Available1023Open in IMG/M
3300027590|Ga0209116_1094043All Organisms → cellular organisms → Bacteria → Acidobacteria658Open in IMG/M
3300027667|Ga0209009_1179240All Organisms → cellular organisms → Bacteria → Acidobacteria538Open in IMG/M
3300027684|Ga0209626_1049902All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1047Open in IMG/M
3300027727|Ga0209328_10090833All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli933Open in IMG/M
3300027745|Ga0209908_10230280All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium517Open in IMG/M
3300027767|Ga0209655_10132530All Organisms → cellular organisms → Bacteria → Acidobacteria827Open in IMG/M
3300027825|Ga0209039_10052841All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1843Open in IMG/M
3300027846|Ga0209180_10007937All Organisms → cellular organisms → Bacteria → Acidobacteria5428Open in IMG/M
3300027853|Ga0209274_10119981All Organisms → cellular organisms → Bacteria → Acidobacteria1309Open in IMG/M
3300027855|Ga0209693_10570934All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300027879|Ga0209169_10187107Not Available1081Open in IMG/M
3300027889|Ga0209380_10185810All Organisms → cellular organisms → Bacteria → Acidobacteria1219Open in IMG/M
3300027889|Ga0209380_10240302All Organisms → cellular organisms → Bacteria → Acidobacteria1064Open in IMG/M
3300027895|Ga0209624_10016387All Organisms → cellular organisms → Bacteria → Proteobacteria4713Open in IMG/M
3300027895|Ga0209624_10656259All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Dyella → Dyella flava694Open in IMG/M
3300028906|Ga0308309_10226423All Organisms → cellular organisms → Bacteria → Acidobacteria1553Open in IMG/M
3300028906|Ga0308309_10420949All Organisms → cellular organisms → Bacteria1147Open in IMG/M
3300028906|Ga0308309_11616367All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300028906|Ga0308309_11618080All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300029883|Ga0311327_10021952All Organisms → cellular organisms → Bacteria5396Open in IMG/M
3300029943|Ga0311340_11237394Not Available599Open in IMG/M
3300029953|Ga0311343_10626799All Organisms → cellular organisms → Bacteria → Acidobacteria917Open in IMG/M
3300030007|Ga0311338_10494023All Organisms → cellular organisms → Bacteria → Acidobacteria1285Open in IMG/M
3300030011|Ga0302270_10203939All Organisms → cellular organisms → Bacteria → Acidobacteria1142Open in IMG/M
3300030053|Ga0302177_10598824All Organisms → cellular organisms → Bacteria → Acidobacteria563Open in IMG/M
3300030399|Ga0311353_10282346Not Available1528Open in IMG/M
3300030707|Ga0310038_10359803All Organisms → cellular organisms → Bacteria → Acidobacteria642Open in IMG/M
3300030737|Ga0302310_10392203All Organisms → cellular organisms → Bacteria → Acidobacteria762Open in IMG/M
3300030760|Ga0265762_1002592All Organisms → cellular organisms → Bacteria3250Open in IMG/M
3300031128|Ga0170823_14196649All Organisms → cellular organisms → Bacteria → Acidobacteria844Open in IMG/M
3300031231|Ga0170824_117509839All Organisms → cellular organisms → Bacteria1564Open in IMG/M
3300031236|Ga0302324_100652640All Organisms → cellular organisms → Bacteria → Acidobacteria1496Open in IMG/M
3300031708|Ga0310686_117384423All Organisms → cellular organisms → Bacteria1702Open in IMG/M
3300031712|Ga0265342_10266413All Organisms → cellular organisms → Bacteria → Acidobacteria910Open in IMG/M
3300031720|Ga0307469_10952556All Organisms → cellular organisms → Bacteria → Acidobacteria798Open in IMG/M
3300031753|Ga0307477_10000940All Organisms → cellular organisms → Bacteria27055Open in IMG/M
3300031753|Ga0307477_10803527All Organisms → cellular organisms → Bacteria → Acidobacteria625Open in IMG/M
3300031823|Ga0307478_10863207All Organisms → cellular organisms → Bacteria → Acidobacteria757Open in IMG/M
3300031823|Ga0307478_11332682All Organisms → cellular organisms → Bacteria → Acidobacteria596Open in IMG/M
3300031941|Ga0310912_10194513All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa acidisoli1549Open in IMG/M
3300031947|Ga0310909_10650883All Organisms → cellular organisms → Bacteria → Acidobacteria878Open in IMG/M
3300031962|Ga0307479_10449768All Organisms → cellular organisms → Bacteria → Acidobacteria1272Open in IMG/M
3300031962|Ga0307479_11654550All Organisms → cellular organisms → Bacteria → Acidobacteria594Open in IMG/M
3300032805|Ga0335078_12063690All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil28.83%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.04%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil9.82%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.98%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.29%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring3.68%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa3.68%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.45%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.45%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.45%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.84%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog1.84%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.23%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil1.23%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.23%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.23%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.23%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.23%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland0.61%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.61%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds0.61%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.61%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.61%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.61%
Thawing PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost0.61%
Permafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil0.61%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost0.61%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.61%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.61%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.61%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere0.61%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001082Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3EnvironmentalOpen in IMG/M
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002917Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cmEnvironmentalOpen in IMG/M
3300004137Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF202 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005167Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121EnvironmentalOpen in IMG/M
3300005437Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaGEnvironmentalOpen in IMG/M
3300005591Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1EnvironmentalOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005602Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2EnvironmentalOpen in IMG/M
3300005712Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009628Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10EnvironmentalOpen in IMG/M
3300009650Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061EnvironmentalOpen in IMG/M
3300009665Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10EnvironmentalOpen in IMG/M
3300009764Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011269Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300014155Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300017933Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1EnvironmentalOpen in IMG/M
3300017942Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3EnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018047Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300020070Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020199Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300020582Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-OEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021180Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021402Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-OEnvironmentalOpen in IMG/M
3300021404Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-OEnvironmentalOpen in IMG/M
3300021405Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022527Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022530Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022533Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300022714Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022717Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022724Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022726Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300022733Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3EnvironmentalOpen in IMG/M
3300024225Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic ? CZU5Host-AssociatedOpen in IMG/M
3300025812Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_150 (SPAdes)EnvironmentalOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107 (SPAdes)EnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026557Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungalEnvironmentalOpen in IMG/M
3300027173Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF036 (SPAdes)EnvironmentalOpen in IMG/M
3300027548Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027590Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027684Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027727Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027745Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 812P2MEnvironmentalOpen in IMG/M
3300027767Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300027855Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027895Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)EnvironmentalOpen in IMG/M
3300028906Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)EnvironmentalOpen in IMG/M
3300029883I_Bog_E2 coassemblyEnvironmentalOpen in IMG/M
3300029943I_Palsa_N3 coassemblyEnvironmentalOpen in IMG/M
3300029953II_Bog_E3 coassemblyEnvironmentalOpen in IMG/M
3300030007I_Palsa_E1 coassemblyEnvironmentalOpen in IMG/M
3300030011Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_E2_3EnvironmentalOpen in IMG/M
3300030053Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2EnvironmentalOpen in IMG/M
3300030399II_Palsa_E2 coassemblyEnvironmentalOpen in IMG/M
3300030707Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)EnvironmentalOpen in IMG/M
3300030737Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2EnvironmentalOpen in IMG/M
3300030760Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031712Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaGHost-AssociatedOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031947Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000HEnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12664J13189_101034613300001082Forest SoilMIRIAVSRRNLLATGACALIGAVGLPGSASATVSGGQNLT
JGI12269J14319_1010452343300001356Peatlands SoilMKSIAVTRRRLLGAGACTLAGVVSLPGLASASALGGQNSA
JGIcombinedJ26739_10098920123300002245Forest SoilMPRRNLLATGAFALAGAVDLPGLTRAGALGRHDSTNEEII
JGIcombinedJ26739_10134960713300002245Forest SoilMTRITVSRRHLLTTGVCSLVGAVSLPGAASASALGGQNLTNEE
JGI25616J43925_1037708113300002917Grasslands SoilMTRIAASRRNLLATGACALVGAVSLPGPASASALGGQNLTNEEVARKWYA
Ga0058883_149961513300004137Forest SoilMTMTSIAVSRRNLLATGTCALVGAVSLAGPASAGAWGGQNSTNE
Ga0062386_10169220523300004152Bog Forest SoilMTRVAVSRRNLLATGACALVGAVSLPGPASASALGGQNLTNE
Ga0062386_10180801623300004152Bog Forest SoilMTMTMTRTAVSRRNLLATGACALVAGAVSLPGPASASALGGQNLTNE
Ga0062595_10176042223300004479SoilMTRIAVSRRNLLQTGACALVGAVSMAGSASASASGGQNLTTEEV
Ga0066672_1075597813300005167SoilMSRRDLLATGACTLVGAVTPPGLARASALRGHDLTNEEIIRK
Ga0070710_1012988613300005437Corn, Switchgrass And Miscanthus RhizosphereMTKIAVSRRNLLATGACALVGAVSLLGPASASALGEQNLTNEELVRKW
Ga0070710_1025609623300005437Corn, Switchgrass And Miscanthus RhizosphereMTRITMSRRNLLATGACALVGAVTLPGPARASAWGVPDLTNE
Ga0070761_1054306413300005591SoilMTRIAVSRRNLLATGVCALVGAVSLPEPASASALGGQNLTNEEV
Ga0066706_1007281833300005598SoilMTRIAVSRRNLLATGACALVGAVSLPGPASANALGGQNLTNEE
Ga0070762_1004933513300005602SoilMTMTMTRIAVSRRNVLITGACTLVGAVSLPGPASATPIGGQNLTNEDVVRKWYAAW
Ga0070764_1053555323300005712SoilMKRVAVSRRNLLATGACALVGAVCLPEPASGSTSGGQNLTNEE
Ga0070766_1028983813300005921SoilMTRIAVSRRNLLATGACALVAAVSLTKPASASPSTEEVVRKW
Ga0070766_1129723713300005921SoilMTRIAVSRRNLLATGACALVGAVSLPGPASASALGGQNLTNEEV
Ga0066790_1045433123300005995SoilMTGRTMTRIAVSRRNLLATGACALVGAVSLPGPASASALG
Ga0075030_10084009923300006162WatershedsMTRIAVSRRNLLATGACVLVGAVSLPRPASASALGGQSLT
Ga0070765_10122743333300006176SoilMTRMTVSRRHLLATGVCAMAGAVSLPGSASASAWGGQDLTN
Ga0070765_10162872023300006176SoilMTGITVSRRNLLATGAGAVFGPVSLLGPASASALGGQNLTTEEVVRKWYAGW
Ga0079221_1032513723300006804Agricultural SoilMTSIAIPRRNLLATGSCALAGAVTLPLLAKASASGEHDVTNEETV
Ga0075425_10170434623300006854Populus RhizosphereMTRITMPRRNLLATGACALVGAATLPGLARASAMGGPDLANEEIIRK
Ga0073928_1002182513300006893Iron-Sulfur Acid SpringMTRIEVSRRNLLATGACALVGAVSLPGLASASALGGQNLT
Ga0073928_1071333323300006893Iron-Sulfur Acid SpringMTRTTVSRRNLLAKGTCALLVAVSLRGPASASALGG
Ga0073928_1113112323300006893Iron-Sulfur Acid SpringMTRIAVSRRNLLATGVCALVGAVSLPGPARASAFGRAELNERGGSGTQPGRR
Ga0073928_1117202313300006893Iron-Sulfur Acid SpringMTRIAMPRRNLLATGARALVGAVTLPGLARARALGGHDSMN
Ga0099829_1099605323300009038Vadose Zone SoilMTRITVSRRNLLATGAFALVGAVSLPGLASARALEGQN
Ga0116125_117963313300009628PeatlandMTRIAVSRRHVLATGVCALGGVTLAGPASASKMGDHD
Ga0105857_101915443300009650Permafrost SoilMTRIAMSRRNLLATGGCALVGAVSLPGRARASALGGQNLTNEEV
Ga0116135_124650123300009665PeatlandMTTTTIAVSRRTLLATGACALVGAVSLPGSASASALGGQNSTNEEVVSKW
Ga0116134_133701113300009764PeatlandVSRRNLLATGACALVGAVSLPGPASASALGGQNLTNE
Ga0126382_1037544623300010047Tropical Forest SoilMTRIKVSRRNLLATGACALIGAGAVRLPAAASAGTLGGQNLTNEEL
Ga0126373_1104246313300010048Tropical Forest SoilMTSMRVSRRNLLSTGACALVGAVSLPGRASASASGGQDLTNEEVVRKWY
Ga0126373_1270060313300010048Tropical Forest SoilMTRITVSRRNLLGTGVCALVGALSPPGPASASVLLGRRNLTLEEV
Ga0099796_1057657723300010159Vadose Zone SoilMTGRTMTRIAVSRRNLLATGACALAGAVSLPGLASASASGGQNL
Ga0150983_1169765923300011120Forest SoilVSRRNLLATGACALGGAMSLPGSASPSALGGQNLTNEEVARKWY
Ga0137392_1112783223300011269Vadose Zone SoilMTRTVVSRRNLIATGACALVGAVSLPGLASARALEGQNLTNEEIIRKW
Ga0137393_1110442223300011271Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGLARASALGG
Ga0137389_1048885123300012096Vadose Zone SoilMSRRNLLAMGACGLVGAVTLTVQARASVLRGNDLTNEEIIHKWYA
Ga0137381_1017490133300012207Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGLARASALGGHDLTNEE
Ga0137378_1018311313300012210Vadose Zone SoilMTKITMSRRNLLATGACALVGAVTLPGAARAGTLGEHDLTNEEII
Ga0137378_1031997233300012210Vadose Zone SoilMPRRNLLATGACALVGAVTLPGLARASALGGHDLTNEEIIRKWYAA
Ga0137360_1063723713300012361Vadose Zone SoilMTRITMSRRNLLATGACALVGAVSLPGPASANALGGQNLTNEEVV
Ga0137396_1085039623300012918Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGPARTGALGVPDLT
Ga0137413_1046049923300012924Vadose Zone SoilMTNIAVTRRRLLAAGVCTLAGAASLPGSASASALGGQNLTTEEIIRKW
Ga0137416_1181698013300012927Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGLARASALGGHDLTN
Ga0137410_1197890613300012944Vadose Zone SoilMSRRNLLATGACALVGAVTLPGAARASTLGEHDLTNEEIIRK
Ga0164302_1046876423300012961SoilMTRITVSRRNLLATGACALVGAVTLPGLARASALGGPDLTNEEIIRKWY
Ga0181524_1009877413300014155BogMSRRNLLVTGACALVGAVTLPGLARASTLEGHDLTN
Ga0182024_1011548253300014501PermafrostMTRISVSRRNLLATGTCALVGAVSLPGLASASALVGQNLTTEEVVRK*
Ga0132255_10155318523300015374Arabidopsis RhizosphereMTRTTVPRRNLLTTGACALLGAATLPGLARASALGG
Ga0182037_1046408623300016404SoilMTRIAVSRRNILAMGASALVGAAPLAGAARARALGGENLTNEEIVREWY
Ga0187801_1037664223300017933Freshwater SedimentMTMIALSRRNLLATGACALVGAVNLPGPARASALG
Ga0187808_1051770723300017942Freshwater SedimentMTTIAVSRRNLLATGAWALVGAAGLHGPAKANALGGQVSTNEETIR
Ga0187782_1134146623300017975Tropical PeatlandMTTNTVSRRNLLATGACALVGALGLSQAARAGALGAQNST
Ga0187859_1037647823300018047PeatlandMTRIAVSRRHVLATGVCALGGVTLAGPASASKMGDHDLT
Ga0187772_1063921623300018085Tropical PeatlandMRTSTVSRRNLLATGACALVGAVTLPGPAHASASGENHSTNEE
Ga0206356_1060887213300020070Corn, Switchgrass And Miscanthus RhizosphereMAKITVSRRNLLATGAGALAGAVALPASVRASEKGGPNLMSE
Ga0179592_1002977013300020199Vadose Zone SoilMPRRNLLATGACALVGAVTLPGLARASALGGPDSTNEE
Ga0179592_1010947633300020199Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGLARASALGGDDLT
Ga0210407_1002752113300020579SoilMTRIKVSRRNLLAAGACALVGAVSLPGLASASALGGQNLTTEE
Ga0210407_1027348733300020579SoilMTGIGVSRRNLLATGACVLVSAVNLSGPASASALGGQNLTNEEIIREWYAA
Ga0210399_1012207013300020581SoilMTMTGTKIAVSRRNLLATGACALVGAVSLPGQASGSALGEQNLTNE
Ga0210399_1092494023300020581SoilMTGIGVSRRESVATGACVLVSAVNLSGPASASALGGQNLTNEEIIREWYAA
Ga0210395_1074844623300020582SoilMTMTMTRIAVSRRNVLITGACTLVGAVSLPGPASATPIGGQNL
Ga0210395_1091858923300020582SoilMTRIAVSRRNLLATGACALVGAASLPGPANASALAG
Ga0210395_1130789713300020582SoilMKRIAVSRRNLLATGACALVGVVCLPGPASASAWGV
Ga0210401_1077202013300020583SoilMTTIAVSRRNLLATGACALVGAVSLLGPASASALGEQNLTNEEI
Ga0210401_1157502023300020583SoilMTRIAVSRRNLLATGACALVGAVSLPTSASAGASGG
Ga0210400_1049817923300021170SoilMTRTAVSRRNLLQTGACALVGAVSMPRPARASASAGQNLTTEEVVRKWYAGW
Ga0210396_1032403713300021180SoilMTRITMPRRNLLATGACSLVGAVTLPGLARASALGGHDITN
Ga0210393_10016198113300021401SoilMTRITMPRRNLLATGACALVGAVTLPGLSRASALGGPDLT
Ga0210393_1051666513300021401SoilMTRTAVSRRNLLQTGACALVGAVSMPRPARASASAGQNLTTE
Ga0210393_1080785313300021401SoilMTVTTFAVSRRELLATGACALVGAMSLAGPANAAASETQNATNEELVRRWYA
Ga0210393_1122154913300021401SoilMTRIAMSRRNLLATGACALVSAVNLSGPASASALGGQNLANEEIIRK
Ga0210393_1134265523300021401SoilMTRIAVSRRDLLATGVCALVGAASLPGLASASASGGQNLTN
Ga0210385_1072953223300021402SoilMTMTRIAVSRRNLLATGACALVAAVSLPGPANAAALDGQNLTNEELARKWN
Ga0210389_1064478113300021404SoilMIRIAVSRRNLLATGACALVGAVSLPGAASANVLGGQNSTIEEIIR
Ga0210389_1092939323300021404SoilMTRIAVSRRDLLATGVCALVGAASLPGLASASASGRQNLTNEEV
Ga0210387_1116787713300021405SoilMTRITMPRRNLLATGACALIGAVTLPGLARAGALGGHDLTN
Ga0210387_1179177813300021405SoilMTRMTVSRRNLLATGACALVGAVSLPGPASASVGAEQNLRNDEVVR
Ga0210383_1141321923300021407SoilMTERTMTRTAVSRRNLLATGACALVGAVSLPGPASANAF
Ga0210384_1025671613300021432SoilMTRIAVSRRNLLATGACALVAAVSLPGPASASALGRQNLTNE
Ga0210384_1161503013300021432SoilMTRIRVSRRNLLATGAFALVGAVSLPGLESARALEGQNLTNEEIIRKWY
Ga0210391_1014129033300021433SoilMTRIAVSRRNLLATGACALVGAVSLPGPASASAGGGQNVTNE
Ga0210391_1056063413300021433SoilMTRILVSRRNLLATGACALVGAVSMSGPASASALGGQNLTNEEVVR
Ga0210391_1082290723300021433SoilMTMKMTVAAIAMSRRNLLATGACALVGTLSLPGLASASAS
Ga0210390_1156739513300021474SoilMKRIAVSRRNLLATGACALVGVVCLPGPASASAWGVQNLT
Ga0210398_1148836313300021477SoilMTRIAVSRRNLLATGACALVGAVSLPGLASASAAGGEDVTN
Ga0210402_1002620043300021478SoilMTRITMPRRDVIATGACALVGLVRPAGLARAAALAGPGVMN
Ga0210402_1039079113300021478SoilMTRITMPRRNLLATGACALVGAVTLPGLARATASGGPDLTNEEII
Ga0210402_1143446813300021478SoilMTRMTVSRRNLLATGASALAGAVTLLRPARASASGAQNLTNE
Ga0210410_1135748813300021479SoilMTRITVSRRHLLTTGVCSLVGAVSLPGAASASALGGQNLTNEEIARKWYAA
Ga0210410_1158536313300021479SoilMTRITVSRRNLLTTGACALVGAVSLPGLASASALEGQN
Ga0210409_1150083413300021559SoilMTRIAVSRRNLLATGACALVGTVSLPGPAYARALGAQNL
Ga0126371_1150875913300021560Tropical Forest SoilMTSIAVSRRNLLATGSCALVGAVSLPGLASASSLGGQNLTNQE
Ga0242664_103140913300022527SoilMTRIAVSRRNLLATGACALVGTVSLPGPAYARALGAQNLTNEEVVRKWYA
Ga0242658_104957413300022530SoilMTRIRVPRRNLLATGACALVGAVTLPRPARASALGGPDLTNEEIIRKWH
Ga0242658_123729913300022530SoilMTKIAVSRRNLLATGAWALVGAVSLLGPASASALGEQNLTNEELVRKWYA
Ga0242662_1003815713300022533SoilMTRITVSRRNLLTTGVCSLVGAVSLPGAASASALGGQNLTNEEIARKWY
Ga0242662_1031466523300022533SoilMTRIEVSRRNPLATGACALVGAVSTPGPSSASASGGQ
Ga0212123_1084424913300022557Iron-Sulfur Acid SpringMTRTTVSRRNLLAKGTCALLVAVSLRGPASASALGGQ
Ga0212123_1094915223300022557Iron-Sulfur Acid SpringMTRIAVSRRNLLATGVCALVGAVSLPGPARASAFGRAELNERG
Ga0242671_102489623300022714SoilMTRIAVSRRNLLATGAWALVSAVSLPGPASASALGGQNL
Ga0242661_102943323300022717SoilMTRTMTKTAVSRRSLLATGACALVGAVSLPGSASASVLGAPNL
Ga0242665_1009260413300022724SoilMTRIAVSRRNLLATGACALVGAVSPTEPASGSAWGEHNLTNEEVARKWY
Ga0242654_1020127913300022726SoilMTGRTMTMTKIAVSRRNLLATGACALVGAVSLPGQASGSALGEQNLTNEEVVRKW
Ga0224562_102195723300022733SoilMTRTAVSRRNLLATGVCALVGAVSLTGPASASALVGQNLTTE
Ga0224572_103296713300024225RhizosphereMTRIAVSRRNLLATGACALVGAVSLPGPASASALGGQNLTNEEVVR
Ga0208457_104575223300025812PeatlandMTRITMSRRNLLVTGACALVGAVTLPGLARASTLEGH
Ga0209839_1001188663300026294SoilMTGRTMTRIAVSRRNLLATGACALVGAVSLPGPASASA
Ga0209152_1007791813300026325SoilMTRIAVSRRNLLATGACALVGAVSLPGPASANALGGQNLTNEEVVRQ
Ga0257168_102603223300026514SoilMTRITMPRRSLLATGACALIGAVTLPGLARASASGG
Ga0179587_1018626833300026557Vadose Zone SoilMTRITMPRRNLLATGACALVGAVTLPGLARASALGGPDSTNEEIIRKWYA
Ga0179587_1051786923300026557Vadose Zone SoilMTMTAVSRRDLLATGACALVSAVSLPGLASASASGGQNLT
Ga0208097_101322923300027173Forest SoilMTRIAVSRRDLLATGAGAVFGPVSLLVPASVSAMG
Ga0209523_103427433300027548Forest SoilMTKIAVSRRKLLATGACALVGAGSLLGPASASALDEQNLTNEE
Ga0209116_109404313300027590Forest SoilMTMTGIKIAVSRRNLLATGACALVGALSLPGPASASALGGQNLTNGELV
Ga0209009_117924013300027667Forest SoilMTRIAVSRRNLLATGAYALVGAVSLPGPASASALG
Ga0209626_104990233300027684Forest SoilMTRITVSRRNLLATGAFALVGAVSLPGLASASALEGQ
Ga0209328_1009083323300027727Forest SoilMTRITVSRRNLLATGAFALVGAVSLPGLASARALEGQNL
Ga0209908_1023028023300027745Thawing PermafrostMTRIAVSRRNLLATGACALVGAVRLPGPASASALGGQNLT
Ga0209655_1013253023300027767Bog Forest SoilMTRTTVSRRNLLASGTCALFVAAILPGPASASAFGEQNST
Ga0209039_1005284143300027825Bog Forest SoilMTRITVSRRNLLATGAFALVGAVSLPGLASARALEGQNLTNEEIIRKWYA
Ga0209180_1000793753300027846Vadose Zone SoilMTSIAVSRRNLLATGACALVGAVSLPGPASASALGGQ
Ga0209274_1011998113300027853SoilVSRRNLLATGACALVGAVSLPGSASASALGGQNLTNEEVARKWYAAW
Ga0209693_1057093413300027855SoilMTRIAVSRRNLLATGACALIGAVGLRGSASATVSGGQNLTTEEVVRKWYAGWEQK
Ga0209169_1018710723300027879SoilMTKIAVSRRNLLASGACALVGAVSLPGAASASASEAQKSTN
Ga0209380_1018581013300027889SoilMTRITMPRRNLLATGACALVGAVTLPGLARASASGGPDLTNEEII
Ga0209380_1024030223300027889SoilMTRIAVSRRNLLATGACALIGAVGLRGSASATVSGGQNLTTEEVVRK
Ga0209624_1001638773300027895Forest SoilMTRNKVSRRNLLATGACALVGAVSLPGSASATALGGQNF
Ga0209624_1065625913300027895Forest SoilMTMTRTRIGVSRKKLLTTGACALVGAVSLPGPASASAGGQNLTND
Ga0308309_1022642313300028906SoilVSRRNLLATGACALVGAVSLPGSASASALGGQNLTNEEVA
Ga0308309_1042094913300028906SoilMTRITMPRRNLLATGACALIGAVTLPGLARAGALGGHDL
Ga0308309_1161636713300028906SoilMTRIAVSRRNLLATGACALVSAVNLLGPASASALGGQNLT
Ga0308309_1161808013300028906SoilMTRIAVSRRNLLATGAGAVFGPVSLLGPASASALGGQNLTTEEVVR
Ga0311327_1002195213300029883BogMTGKAMTRIAVSRRNLLATGGYALVGAVSLPEWAGASALGGQNSANEELVRK
Ga0311340_1123739413300029943PalsaMTRIAVSRRNLLATGACALAATVGLPGAANASALGGQNLTN
Ga0311343_1062679923300029953BogMTGRVMTRVVSRRNLLATGGYALVGAVSLPEWAGASALGGQ
Ga0311338_1049402323300030007PalsaMTRIAVSRRNLLATGACALVGAASLPGPASASAFE
Ga0302270_1020393913300030011BogMTGKAMTRIAVSRRNLLATGGYALVGAVSLPEWAGASALGGQ
Ga0302177_1059882413300030053PalsaMTRTTVSRRNLLEGTCALLVAVSLPGPASASALGGQ
Ga0311353_1028234623300030399PalsaMTRIVMSRRHLLGAGACALTGAASLPGLATASALGGQNLTNET
Ga0310038_1035980313300030707Peatlands SoilMTRIAVSRRDLLTTGACALVGAVSLPGPARASALGGQSLTNEQ
Ga0302310_1039220313300030737PalsaMTVTRIAVSRRNLLATGACALLGAVSLPGPASASALGGQNLTNEE
Ga0265762_100259213300030760SoilMTRTAVSRRKLLATGACALVGAVSLSGPVNASALEGQNLANEEVARKWYA
Ga0170823_1419664913300031128Forest SoilMTRIAVSRRNLLATGACALVGAVSIPAPASASAAGGQNSTTEEI
Ga0170824_11750983933300031231Forest SoilMTMTAVSRRNLLATGACALVGASSLPGLASASALGGQNLTTEEVV
Ga0302324_10065264013300031236PalsaVSRGNLLATGACALVGAMSLPRPASASALGGQNLTNEEVVRKWYA
Ga0310686_11738442333300031708SoilMTRTAVSRRKLLARGACALVGAVSLSGPVSASALGGQ
Ga0265342_1026641313300031712RhizosphereMTRIAVSRRNLLATGACALVAAVSFPRPASASASGEQNLTNEEVARKWYAT
Ga0307469_1095255613300031720Hardwood Forest SoilMTRITMSRRNLLATGACALVGVVALPGPARASAWGVPDLT
Ga0307477_10000940293300031753Hardwood Forest SoilMTRITMPRRNLLGTGACALVGAVTLPGLARASASGGPD
Ga0307477_1080352723300031753Hardwood Forest SoilMTRIAVSRRDLLATGAGAVFGPVSLLVPASVSAMGGQNSANDEIVRKWYASWEK
Ga0307478_1086320723300031823Hardwood Forest SoilMTSITVSRRNLVATGACALFGAATLPGLARPIALGGQNLTNEEIV
Ga0307478_1133268223300031823Hardwood Forest SoilMTRIAVSRRNLLATGACALVSAVSLPTSASVSALG
Ga0310912_1019451313300031941SoilMIRTTVSRGNLLATGTCALLVAVSLPGPASASALGGQNLTNEEIIRKW
Ga0310909_1065088313300031947SoilMIRTTVSRGNLLATGTCALLVAVSLPGPASASALGG
Ga0307479_1044976813300031962Hardwood Forest SoilMTKITMPRRNLLAMGACALVGAVTLPGLARASASGGPEST
Ga0307479_1165455013300031962Hardwood Forest SoilMTRITMARRNLLATGACALVGAVTLPELARASALG
Ga0335078_1206369013300032805SoilMPSIRVSRRNLLATGAGALVGAVSLPGPAKVSALGEQNLTNEEVVRKWYAA


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