NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F039183

Metagenome / Metatranscriptome Family F039183

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F039183
Family Type Metagenome / Metatranscriptome
Number of Sequences 164
Average Sequence Length 38 residues
Representative Sequence MKKVLIALVATLVAVSVSGCVGVGKGKAPPVVTKG
Number of Associated Samples 110
Number of Associated Scaffolds 164

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 68.55 %
% of genes near scaffold ends (potentially truncated) 34.76 %
% of genes from short scaffolds (< 2000 bps) 82.32 %
Associated GOLD sequencing projects 101
AlphaFold2 3D model prediction Yes
3D model pTM-score0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (50.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(13.415 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(54.268 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 33.33%    β-sheet: 0.00%    Coil/Unstructured: 66.67%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 164 Family Scaffolds
PF03734YkuD 4.27
PF00106adh_short 3.66
PF00990GGDEF 3.05
PF001982-oxoacid_dh 1.22
PF08241Methyltransf_11 1.22
PF02735Ku 1.22
PF12787EcsC 1.22
PF16576HlyD_D23 1.22
PF13472Lipase_GDSL_2 1.22
PF00149Metallophos 1.22
PF04392ABC_sub_bind 1.22
PF07729FCD 1.22
PF03401TctC 1.22
PF01425Amidase 0.61
PF01068DNA_ligase_A_M 0.61
PF13437HlyD_3 0.61
PF10397ADSL_C 0.61
PF02687FtsX 0.61
PF01872RibD_C 0.61
PF01176eIF-1a 0.61
PF03989DNA_gyraseA_C 0.61
PF02776TPP_enzyme_N 0.61
PF04140ICMT 0.61
PF02798GST_N 0.61
PF01323DSBA 0.61
PF06032DUF917 0.61
PF07750GcrA 0.61
PF03237Terminase_6N 0.61
PF01494FAD_binding_3 0.61
PF09084NMT1 0.61
PF00383dCMP_cyt_deam_1 0.61
PF08546ApbA_C 0.61
PF13561adh_short_C2 0.61
PF12071DUF3551 0.61
PF11752DUF3309 0.61
PF13458Peripla_BP_6 0.61

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 164 Family Scaffolds
COG3034Murein L,D-transpeptidase YafKCell wall/membrane/envelope biogenesis [M] 4.27
COG1376Lipoprotein-anchoring transpeptidase ErfK/SrfKCell wall/membrane/envelope biogenesis [M] 4.27
COG0508Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) componentEnergy production and conversion [C] 1.22
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 1.22
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 1.22
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 1.22
COG2186DNA-binding transcriptional regulator, FadR familyTranscription [K] 1.22
COG1273Non-homologous end joining protein Ku, dsDNA break repairReplication, recombination and repair [L] 1.22
COG1802DNA-binding transcriptional regulator, GntR familyTranscription [K] 1.22
COG1423ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) familyReplication, recombination and repair [L] 0.61
COG5352Uncharacterized conserved proteinFunction unknown [S] 0.61
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.61
COG3535Uncharacterized conserved protein, DUF917 familyFunction unknown [S] 0.61
COG1985Pyrimidine reductase, riboflavin biosynthesisCoenzyme transport and metabolism [H] 0.61
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 0.61
COG1793ATP-dependent DNA ligaseReplication, recombination and repair [L] 0.61
COG0154Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidaseTranslation, ribosomal structure and biogenesis [J] 0.61
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 0.61
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 0.61
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.61
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.61
COG0361Translation initiation factor IF-1Translation, ribosomal structure and biogenesis [J] 0.61
COG0262Dihydrofolate reductaseCoenzyme transport and metabolism [H] 0.61
COG0188DNA gyrase/topoisomerase IV, subunit AReplication, recombination and repair [L] 0.61


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms50.00 %
UnclassifiedrootN/A50.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2070309004|prs_FIHLEPW02SOX2JNot Available515Open in IMG/M
2228664022|INPgaii200_c0426330Not Available569Open in IMG/M
3300000955|JGI1027J12803_101369845Not Available612Open in IMG/M
3300000955|JGI1027J12803_105852333Not Available1150Open in IMG/M
3300001081|JGI12662J13196_1003509Not Available1200Open in IMG/M
3300002245|JGIcombinedJ26739_100012289All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria7040Open in IMG/M
3300002245|JGIcombinedJ26739_101636962Not Available542Open in IMG/M
3300004114|Ga0062593_100639422All Organisms → cellular organisms → Bacteria → Proteobacteria1024Open in IMG/M
3300004156|Ga0062589_100866362Not Available827Open in IMG/M
3300004479|Ga0062595_101807458Not Available581Open in IMG/M
3300005093|Ga0062594_100447319All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1068Open in IMG/M
3300005332|Ga0066388_103015802All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300005332|Ga0066388_103806488Not Available770Open in IMG/M
3300005529|Ga0070741_11654303Not Available522Open in IMG/M
3300005562|Ga0058697_10606899Not Available572Open in IMG/M
3300005564|Ga0070664_102232833Not Available519Open in IMG/M
3300005575|Ga0066702_10906872Not Available526Open in IMG/M
3300005587|Ga0066654_10244788All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales944Open in IMG/M
3300005764|Ga0066903_100099224All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3924Open in IMG/M
3300005764|Ga0066903_100159990All Organisms → cellular organisms → Bacteria → Proteobacteria3262Open in IMG/M
3300005764|Ga0066903_100272779All Organisms → cellular organisms → Bacteria2641Open in IMG/M
3300005764|Ga0066903_100356693All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae2369Open in IMG/M
3300005764|Ga0066903_100385009All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2295Open in IMG/M
3300005764|Ga0066903_100391086All Organisms → cellular organisms → Bacteria2280Open in IMG/M
3300005764|Ga0066903_100571633All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1947Open in IMG/M
3300005764|Ga0066903_100677007All Organisms → cellular organisms → Bacteria → Proteobacteria1811Open in IMG/M
3300005764|Ga0066903_101092010All Organisms → cellular organisms → Bacteria1470Open in IMG/M
3300005764|Ga0066903_101267821All Organisms → cellular organisms → Bacteria → Proteobacteria1374Open in IMG/M
3300005764|Ga0066903_101611496All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1231Open in IMG/M
3300005764|Ga0066903_101718690Not Available1195Open in IMG/M
3300005764|Ga0066903_101762116Not Available1181Open in IMG/M
3300005764|Ga0066903_103700159Not Available823Open in IMG/M
3300005764|Ga0066903_104287435Not Available762Open in IMG/M
3300005764|Ga0066903_105615836All Organisms → cellular organisms → Bacteria660Open in IMG/M
3300005764|Ga0066903_108997610Not Available506Open in IMG/M
3300006028|Ga0070717_10355182All Organisms → cellular organisms → Bacteria → Proteobacteria1311Open in IMG/M
3300006046|Ga0066652_100007672All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium6624Open in IMG/M
3300006046|Ga0066652_100215159All Organisms → cellular organisms → Bacteria → Proteobacteria1662Open in IMG/M
3300006237|Ga0097621_102244867All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → Mesorhizobium albiziae522Open in IMG/M
3300006572|Ga0074051_10526790Not Available516Open in IMG/M
3300006791|Ga0066653_10122628All Organisms → cellular organisms → Bacteria1222Open in IMG/M
3300006800|Ga0066660_11327686Not Available563Open in IMG/M
3300006852|Ga0075433_11702626Not Available543Open in IMG/M
3300006871|Ga0075434_100579657All Organisms → cellular organisms → Bacteria1141Open in IMG/M
3300006893|Ga0073928_10000307All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales117262Open in IMG/M
3300007258|Ga0099793_10440835All Organisms → cellular organisms → Bacteria643Open in IMG/M
3300009038|Ga0099829_10830841All Organisms → cellular organisms → Bacteria → Proteobacteria767Open in IMG/M
3300009038|Ga0099829_11198618All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales629Open in IMG/M
3300009038|Ga0099829_11588160Not Available540Open in IMG/M
3300009088|Ga0099830_10541504All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae952Open in IMG/M
3300009088|Ga0099830_10585253All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium915Open in IMG/M
3300009088|Ga0099830_11865213Not Available502Open in IMG/M
3300009089|Ga0099828_10430543All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1190Open in IMG/M
3300009089|Ga0099828_10930414All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae776Open in IMG/M
3300009098|Ga0105245_13153589Not Available511Open in IMG/M
3300009100|Ga0075418_11577577All Organisms → cellular organisms → Bacteria713Open in IMG/M
3300009553|Ga0105249_12979389Not Available544Open in IMG/M
3300009792|Ga0126374_11180516All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium612Open in IMG/M
3300010047|Ga0126382_10565442All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium928Open in IMG/M
3300010146|Ga0126320_1382452All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1058Open in IMG/M
3300010147|Ga0126319_1617607Not Available1082Open in IMG/M
3300010339|Ga0074046_10433870Not Available790Open in IMG/M
3300010339|Ga0074046_10687336All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WD16602Open in IMG/M
3300010358|Ga0126370_10949311Not Available781Open in IMG/M
3300010366|Ga0126379_12225497Not Available649Open in IMG/M
3300010400|Ga0134122_12339905Not Available580Open in IMG/M
3300010868|Ga0124844_1214860Not Available697Open in IMG/M
3300010868|Ga0124844_1237469Not Available647Open in IMG/M
3300011270|Ga0137391_11301304Not Available574Open in IMG/M
3300012096|Ga0137389_10797334All Organisms → cellular organisms → Bacteria811Open in IMG/M
3300012189|Ga0137388_10775807Not Available889Open in IMG/M
3300012189|Ga0137388_11007910Not Available768Open in IMG/M
3300012202|Ga0137363_11352185All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae601Open in IMG/M
3300012212|Ga0150985_103446473All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300012212|Ga0150985_106179278Not Available883Open in IMG/M
3300012212|Ga0150985_106523321All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1532Open in IMG/M
3300012212|Ga0150985_108496504Not Available661Open in IMG/M
3300012212|Ga0150985_111815692Not Available673Open in IMG/M
3300012212|Ga0150985_113777932All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2888Open in IMG/M
3300012363|Ga0137390_10219086All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1890Open in IMG/M
3300012469|Ga0150984_112011313Not Available594Open in IMG/M
3300012469|Ga0150984_112297072Not Available542Open in IMG/M
3300012469|Ga0150984_112452368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2180Open in IMG/M
3300012469|Ga0150984_116080149Not Available2346Open in IMG/M
3300012915|Ga0157302_10215938Not Available698Open in IMG/M
3300012971|Ga0126369_12885569Not Available563Open in IMG/M
3300015077|Ga0173483_11000359Not Available501Open in IMG/M
3300015371|Ga0132258_10298346All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae3962Open in IMG/M
3300015371|Ga0132258_11530488All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1684Open in IMG/M
3300015373|Ga0132257_100031696All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia broomeae5732Open in IMG/M
3300015373|Ga0132257_101333417All Organisms → cellular organisms → Bacteria → Proteobacteria912Open in IMG/M
3300015374|Ga0132255_102137299Not Available853Open in IMG/M
3300015374|Ga0132255_103369981Not Available681Open in IMG/M
3300015374|Ga0132255_104908116Not Available566Open in IMG/M
3300016341|Ga0182035_10478918All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1060Open in IMG/M
3300016341|Ga0182035_12138220Not Available508Open in IMG/M
3300016404|Ga0182037_10263235All Organisms → cellular organisms → Bacteria1370Open in IMG/M
3300016422|Ga0182039_10176714Not Available1681Open in IMG/M
3300016422|Ga0182039_10819347All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfovibrionales → Desulfovibrionaceae → Fundidesulfovibrio → Fundidesulfovibrio magnetotacticus827Open in IMG/M
3300016445|Ga0182038_10310668All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1293Open in IMG/M
3300018058|Ga0187766_11108335Not Available569Open in IMG/M
3300018058|Ga0187766_11275876Not Available534Open in IMG/M
3300018058|Ga0187766_11437952Not Available507Open in IMG/M
3300018073|Ga0184624_10441740Not Available572Open in IMG/M
3300018433|Ga0066667_11548478Not Available588Open in IMG/M
3300018468|Ga0066662_11927508All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales618Open in IMG/M
3300018468|Ga0066662_12101785Not Available592Open in IMG/M
3300018482|Ga0066669_11576514All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae599Open in IMG/M
3300019361|Ga0173482_10273371Not Available730Open in IMG/M
3300021168|Ga0210406_10918846All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium657Open in IMG/M
3300021560|Ga0126371_13409934All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium537Open in IMG/M
3300022557|Ga0212123_10006908All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales18462Open in IMG/M
3300024330|Ga0137417_1358042All Organisms → cellular organisms → Bacteria → Proteobacteria3686Open in IMG/M
3300025320|Ga0209171_10003090All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria23289Open in IMG/M
3300025898|Ga0207692_11082990All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300025928|Ga0207700_11793089Not Available540Open in IMG/M
3300025932|Ga0207690_11516746Not Available560Open in IMG/M
3300025960|Ga0207651_10699964Not Available893Open in IMG/M
3300026023|Ga0207677_10624120Not Available948Open in IMG/M
3300026300|Ga0209027_1154285Not Available779Open in IMG/M
3300027181|Ga0208997_1016238Not Available1028Open in IMG/M
3300027537|Ga0209419_1129922Not Available503Open in IMG/M
3300027635|Ga0209625_1115094All Organisms → cellular organisms → Bacteria → Proteobacteria603Open in IMG/M
3300027812|Ga0209656_10377027Not Available640Open in IMG/M
3300027824|Ga0209040_10089092All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales1768Open in IMG/M
3300027862|Ga0209701_10533934Not Available632Open in IMG/M
3300027862|Ga0209701_10544237Not Available624Open in IMG/M
3300027875|Ga0209283_10778973Not Available590Open in IMG/M
3300028814|Ga0307302_10098524Not Available1395Open in IMG/M
3300031543|Ga0318516_10043159All Organisms → cellular organisms → Bacteria2432Open in IMG/M
3300031544|Ga0318534_10361239Not Available835Open in IMG/M
3300031682|Ga0318560_10020709All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3006Open in IMG/M
3300031744|Ga0306918_10026274All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3614Open in IMG/M
3300031744|Ga0306918_10936893All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria674Open in IMG/M
3300031744|Ga0306918_11251403Not Available572Open in IMG/M
3300031768|Ga0318509_10819875Not Available514Open in IMG/M
3300031781|Ga0318547_10236399All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Oricola → Oricola indica1099Open in IMG/M
3300031793|Ga0318548_10016889All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3005Open in IMG/M
3300031805|Ga0318497_10051850All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium2117Open in IMG/M
3300031819|Ga0318568_10236875All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1129Open in IMG/M
3300031833|Ga0310917_10087323All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium1987Open in IMG/M
3300031879|Ga0306919_10253023Not Available1326Open in IMG/M
3300031879|Ga0306919_10371730All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae1094Open in IMG/M
3300031879|Ga0306919_10997837Not Available640Open in IMG/M
3300031890|Ga0306925_10534765All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium1245Open in IMG/M
3300031893|Ga0318536_10012368All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales3703Open in IMG/M
3300031910|Ga0306923_10145334All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales2704Open in IMG/M
3300031912|Ga0306921_12322659Not Available562Open in IMG/M
3300031941|Ga0310912_11033669All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → Afipia birgiae629Open in IMG/M
3300031945|Ga0310913_10627771All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium761Open in IMG/M
3300031946|Ga0310910_11269150All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium570Open in IMG/M
3300032052|Ga0318506_10279624Not Available740Open in IMG/M
3300032055|Ga0318575_10629125All Organisms → cellular organisms → Bacteria544Open in IMG/M
3300032060|Ga0318505_10409143All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria641Open in IMG/M
3300032066|Ga0318514_10619906All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium576Open in IMG/M
3300032089|Ga0318525_10305980All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium816Open in IMG/M
3300032261|Ga0306920_101999240All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium812Open in IMG/M
3300033290|Ga0318519_11017249Not Available515Open in IMG/M
3300033290|Ga0318519_11074149Not Available502Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil13.41%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil12.80%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil12.20%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil11.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.49%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere4.27%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.66%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil3.66%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere3.66%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.05%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.44%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.44%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere2.44%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring1.83%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.83%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere1.83%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere1.83%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.22%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.22%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil1.22%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.22%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.61%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.61%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.61%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.61%
Green-Waste CompostEnvironmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Green-Waste Compost0.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.61%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.61%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.61%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.61%
AgaveHost-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave0.61%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2070309004Green-waste compost microbial communities at University of California, Davis, USA, from solid state bioreactor - Luquillo Rain Forest, Puerto RicoEnvironmentalOpen in IMG/M
2228664022Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001081Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3EnvironmentalOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005562Agave microbial communities from Guanajuato, Mexico - As.Ma.eHost-AssociatedOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005587Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006572Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006893Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaGEnvironmentalOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010146Soil microbial communities from California, USA to study soil gas exchange rates - JR-CA-SND metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010868Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300012096Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012212Combined assembly of Hopland grassland soilHost-AssociatedOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012915Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S103-311B-2EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300015374Col-0 rhizosphere combined assemblyHost-AssociatedOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300018433Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116EnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300024330Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300025320Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025928Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300027181Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM2_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027537Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027635Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027824Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300031543Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20EnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031682Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031805Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031821Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031893Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300031912Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031945Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082EnvironmentalOpen in IMG/M
3300031946Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032052Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19EnvironmentalOpen in IMG/M
3300032055Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032066Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18EnvironmentalOpen in IMG/M
3300032089Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23EnvironmentalOpen in IMG/M
3300032261Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
prs_021717902070309004Green-Waste CompostMKKIFVALVATVVAVGMAGCVGVGKGKAPPVVTKG
INPgaii200_042633022228664022SoilMKKILVAMVATLVAISVSACVGPYGIGKGKGKAPPPIVTKG
JGI1027J12803_10136984513300000955SoilMKKIMIALVATLVAMSVGACAYGYGKGKAPPPRVVTTKG*
JGI1027J12803_10585233333300000955SoilMKKILVAMVATLVAISVSACVGPYGIGKGKGKAPPPIVTKG*
JGI12662J13196_100350913300001081Forest SoilMKKLVFALLATLVAVSVAGCAGGMGKGKARPAVVTKG*
JGIcombinedJ26739_10001228993300002245Forest SoilMKKLLFALIATIVAVSVSGCAGMGKGKAPPVVTKG*
JGIcombinedJ26739_10163696223300002245Forest SoilMKKVLVALVAILVAVSVSGCAGGFGKGKAPPPRVVTKG*
Ga0062593_10063942223300004114SoilREAVMKKVLIALVASLVAISVSGCAGYGFGKGKAPPPRVVTKG*
Ga0062589_10086636213300004156SoilMKKVLIALVATLVAVSVSGCAGYGFGKGKAPPPRVVTKG*
Ga0062595_10180745813300004479SoilKISPLIREAVMKKVLIALVASLVAISVSGCAGYGFGKGKAPPPRVVTKG*
Ga0062594_10044731923300005093SoilMKKVLIALVASLVAISVSGCAGYGFGKGKAPPPRVVTKG*
Ga0066388_10301580223300005332Tropical Forest SoilMHLYGGPSMKKIMVAVVATLVAISVSACVGPYGIGKGKGKAPPPVVTKG*
Ga0066388_10380648823300005332Tropical Forest SoilMKKVLIALVATLVAVSVSGCAGYGLGKGKAPPPRVVTKG*
Ga0070741_1165430313300005529Surface SoilMKKILVAAVATLIAVSVAGCAAVGFGKGKAPPPVVTKG*
Ga0058697_1060689923300005562AgaveMKKVLIAFVATLVAVSVAGCAGVGKGKGKAPAPVVTKG*
Ga0070664_10223283323300005564Corn RhizosphereVKKGEPMKKVLIALVATLVAVSVAGCAGIGKGKGKPPPPIVTKG*
Ga0066702_1090687213300005575SoilMKKVLIALVATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0066654_1024478823300005587SoilMKKVLTVLVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0066903_10009922463300005764Tropical Forest SoilKIMVALVATLVAISLSGCAYGFGKGKGVPPRVVTKG*
Ga0066903_10015999043300005764Tropical Forest SoilMKKIFVALVATIVAIGMAGCVGVGKGKAPPVVTKG*
Ga0066903_10027277923300005764Tropical Forest SoilMKKLLFALVATIVAVSVSGCVGGYGKGKAPPIVTKG*
Ga0066903_10035669323300005764Tropical Forest SoilMKKVFVALVATVVAVGMAGCVGIGKGKAPPVVTKG*
Ga0066903_10038500913300005764Tropical Forest SoilMGAPMKKLLVAMVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0066903_10039108633300005764Tropical Forest SoilMKKLLIALVATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0066903_10057163323300005764Tropical Forest SoilMKKLLIALVATLVAVSVSGCVGIGKGKGKAPPVVTKG*
Ga0066903_10067700733300005764Tropical Forest SoilMKKLLFALVATLVAVSVSGCVGIGKGKAPPVVTKG*
Ga0066903_10109201033300005764Tropical Forest SoilMKKVLIALIATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0066903_10126782123300005764Tropical Forest SoilMKKFVIALVATLVAVSVSACVGIGKGKGKAPPLPPPPIMTKG*
Ga0066903_10161149643300005764Tropical Forest SoilMKKIMVAVVATLVAISVSACVGPYGIGKGKGKAPPPVVTKG*
Ga0066903_10171869033300005764Tropical Forest SoilMKKVLVALVATLVAVSVSGCVGFGKGKAPPPIVSKG*
Ga0066903_10176211633300005764Tropical Forest SoilMKKIMIALVATLVAMSVGACAYPYGYGKGKAPPPVVTKR*
Ga0066903_10370015923300005764Tropical Forest SoilMKKIFVALVATVVAVGMAGCVGVGKGKAPPVVTKG*
Ga0066903_10428743523300005764Tropical Forest SoilMKKIMVAMVATLVALSVGACAYGYGKGKAPPPRVVTKG*
Ga0066903_10561583623300005764Tropical Forest SoilMKKILVALVATFVAIGMVGCVGGYGKGKAPPIVTKG*
Ga0066903_10899761023300005764Tropical Forest SoilMKKLLFALVATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0070717_1035518223300006028Corn, Switchgrass And Miscanthus RhizosphereMKKVVVAAAAVITLVSLAGCAGIGKGKGKAPPPIPVITKG*
Ga0066652_10000767293300006046SoilMKKIFVAMVATIVAIGMAGCVGVGKGKAPPVVTKG*
Ga0066652_10021515923300006046SoilMKKVLCALVATLVAVSVAGCVGIGKGKGKAPPIVTKG*
Ga0097621_10224486713300006237Miscanthus RhizosphereEAVMKKVLIALVASLVAISVSGCAGYGFGKGKAPPPRVVTKG*
Ga0074051_1052679013300006572SoilLLIALVATLVAVSVSACAGIGKGKGKAPPPIITKG*
Ga0066653_1012262823300006791SoilMKKLLFALVATVVAVSVAGCAGMGKGKAPPVVTKG*
Ga0066660_1132768613300006800SoilMKKLLIALVATLVAVSVSGCVGIGKGKGKAPPIVTKG*
Ga0075433_1170262623300006852Populus RhizosphereVLIALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG*
Ga0075434_10057965733300006871Populus RhizosphereRGTPMKKVLTALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG*
Ga0073928_10000307963300006893Iron-Sulfur Acid SpringMKKLVIALIATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0099793_1044083523300007258Vadose Zone SoilMKKIFVALVATIVAVGMVGCVGVGKGKAPPIVTKG*
Ga0099829_1083084113300009038Vadose Zone SoilMKKLLIALVATLVAVSVSGCVGVGKGKGKAPPIVTKG*
Ga0099829_1119861813300009038Vadose Zone SoilMKKLLVALVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0099829_1158816023300009038Vadose Zone SoilIFVALVATLVAVSMAGCVGVGKGKGKAPPPIVTKG*
Ga0099830_1054150423300009088Vadose Zone SoilMKKVLIALVATVVAVGMAGCVGVGKGKAPPIVTKG*
Ga0099830_1058525323300009088Vadose Zone SoilMKKLLVALVATLVAVSVAGCVGVGKGKGKAPPPIVTKG*
Ga0099830_1186521313300009088Vadose Zone SoilKKVLIALVATLVAVSVSGCVGIGKGKGKAPPIVTKG*
Ga0099828_1043054313300009089Vadose Zone SoilMKKLFVALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG*
Ga0099828_1093041423300009089Vadose Zone SoilMKKVLIALVATLVAVSVSGCVGIGKGKGKAPPIVTKG*
Ga0105245_1315358923300009098Miscanthus RhizosphereMKKVLTALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG*
Ga0075418_1157757723300009100Populus RhizosphereMKKVLTVLVATLVAASVAGCAGIGKGKGKAPPPIVTKG*
Ga0105249_1297938913300009553Switchgrass RhizosphereMKKVLFALVATLVAVSVSGCAGLGKGKGKAPPPPPIVRKG*
Ga0126374_1118051623300009792Tropical Forest SoilMKKVLFALVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0126382_1056544213300010047Tropical Forest SoilMKKVLIALVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0126320_138245213300010146SoilYQHRGYPMKKVLIALVATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0126319_161760723300010147SoilKKILVALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG*
Ga0074046_1043387013300010339Bog Forest SoilMKKVLFALIATLVAVSVSGCVGIGKGKAPPVVTKG*
Ga0074046_1068733613300010339Bog Forest SoilAPMKKIFVALVATVVAVGMAGCVGVGKGKAPPVVTKG*
Ga0126370_1094931113300010358Tropical Forest SoilKVLFALVATLVAVSVSGCVGIGKGKAPPPIVTKG*
Ga0126379_1222549723300010366Tropical Forest SoilMKKIMVAVVATLVAISVSACVGPYGIGKGKGKAPPPVVT
Ga0134122_1233990513300010400Terrestrial SoilMKKVLFALVATLVAVSVSGCAGLGKGKGKAPPPPPIVRK
Ga0124844_121486023300010868Tropical Forest SoilLIALVATLVAVSVSACVGIGKGKGKAPPPIVTKG*
Ga0124844_123746923300010868Tropical Forest SoilVLIALVATLVAVSVSACVGIGKGKGKAPPPIVTKG*
Ga0137391_1130130423300011270Vadose Zone SoilPMKKLLVALVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0137389_1079733413300012096Vadose Zone SoilMKKIFVALVATVVAVGMVGCVGVGKGKAPPIVTKG*
Ga0137388_1077580723300012189Vadose Zone SoilMKKIFVALVATLVAVSMAGCVGVGKGKGKAPPPIVTKG*
Ga0137388_1100791023300012189Vadose Zone SoilMKKIFVALVATIVAVGMAGCVGVGKGKAPPVVTKG*
Ga0137363_1135218513300012202Vadose Zone SoilMKKVLVALVATLVAVSVSGCVGVGKGKAPPVVTKG*
Ga0150985_10344647323300012212Avena Fatua RhizosphereMNKIFVALVATVVAIGMSGCVGVGKGKAPPPIVTKG*
Ga0150985_10617927813300012212Avena Fatua RhizosphereKKVLTVLVATLVAVSVAGCVGIGKGKGKAPPPVVTKG*
Ga0150985_10652332113300012212Avena Fatua RhizosphereLTVLVATLVAVSVAGCVGIGKGKGKAPPPIVTKG*
Ga0150985_10849650413300012212Avena Fatua RhizosphereMKKVLIAFVATLVAVSVAGCAGLGKGRGKAPAPVVTKG*
Ga0150985_11181569213300012212Avena Fatua RhizosphereGQQHRGFQMKKLLFALVATLVAVSVAGCAGMGKGKAPPVVTKG*
Ga0150985_11377793243300012212Avena Fatua RhizosphereKKVLTVLVATLVAVSVAGCVGIGKGKGKGKGKAPPPIVTKG*
Ga0137390_1021908613300012363Vadose Zone SoilMKKVLVALVATLVAVSVSGCVGIGKGKGKAPPIVTKG*
Ga0150984_11201131323300012469Avena Fatua RhizosphereKVLVALVATLVAVSVSGCVGIGKGKGKAPPPVVTKG*
Ga0150984_11229707223300012469Avena Fatua RhizosphereMKKVLIAFVATLVAVSVAGCAGLGKGKGKAPAPVVTKG*
Ga0150984_11245236813300012469Avena Fatua RhizosphereMKKVLCALVATLVAVTVAGCVGVGKGKGKAPPIVTKG*
Ga0150984_11608014933300012469Avena Fatua RhizosphereMKKVLTVLVATLVAVSVAGCVGIGKGKGKGKAPPPIVTKG*
Ga0157302_1021593813300012915SoilMKKVLIAFVATLVAVSVAGCAGIGKGKGKALPPVVTKG*
Ga0126369_1288556913300012971Tropical Forest SoilMKKVLFALVATIVAVSVSGCVGIGKGKAPPVVTKG*
Ga0173483_1100035933300015077SoilSKEAVMKKVLIALVATLVAVSVSGCAGYGFGKGKAPPPRVVTKG*
Ga0132258_1029834623300015371Arabidopsis RhizosphereMKKLLIALVATLVAVSVSGCVGIGKGKAPPVVTKG*
Ga0132258_1153048813300015371Arabidopsis RhizospherePMKKVLIALVATLVAVSVSGCVGVGKGKAPPVVTKA*
Ga0132257_10003169623300015373Arabidopsis RhizosphereMKKVVVAAVTVITLVSLAGCAGIGKGKGKAPPPIPVITKG*
Ga0132257_10133341723300015373Arabidopsis RhizosphereMKKLVIALVATLVAVSVSGCVGIGKGKAPPIVTKG*
Ga0132255_10213729913300015374Arabidopsis RhizosphereLIALVATLVAVSVAGWAGIGKGKGKAPPPIVTKG*
Ga0132255_10336998113300015374Arabidopsis RhizosphereIRGSKEAVMKKVLIALVATLVAVSVSGCAGYGFGKGKAPPPRVVTKG*
Ga0132255_10490811613300015374Arabidopsis RhizosphereKSASIRGSKEAVMKKVLIALVATLVAVSVSGCAGLGKGKAPPPRVVTKG*
Ga0182035_1047891813300016341SoilMKKVFVVLVATVVAVGMAGCVGIGKGKAPPVVTKG
Ga0182035_1151004623300016341SoilMKKLVVALLATLVAVSVAGCAGIGKGKARPAVLTKG
Ga0182035_1213822013300016341SoilMKKLLIALVATLVAVSVSGCVGIGKGKAPPVVTKG
Ga0182037_1026323523300016404SoilGTPMKKVLVALVATLVAVSVAGCVGIGKCKGPPPVVTKG
Ga0182039_1017671413300016422SoilMKKIFVALVATMVAVGMAGCVGVGKGKAPPVVTKG
Ga0182039_1081934713300016422SoilMKKVIFALIATIVAVSVAGCAGMGKGKAPPVVTKG
Ga0182038_1031066833300016445SoilPMKKVLFAVLATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0187766_1110833523300018058Tropical PeatlandMKKLLFALVATLVAVSVSGCVGVGKGKAPPPPVVTK
Ga0187766_1127587613300018058Tropical PeatlandMKKIFVALVATVVAVGMVGCVGVGKGKAPPVVTKG
Ga0187766_1143795223300018058Tropical PeatlandMKKVLFALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0184624_1044174013300018073Groundwater SedimentMKKVLFALVATLVAVSVSGCVGVGKGKAPPIVTKG
Ga0066667_1154847813300018433Grasslands SoilMKKLLFALVATVVAVSVAGCAGMGKGKAPPVVTKG
Ga0066662_1192750813300018468Grasslands SoilMKKLLVAMVATLVAVSVAGCVGIGKGKGKAPPPIVTKG
Ga0066662_1210178513300018468Grasslands SoilMKKIFVALVATIVAVGMAGCVGVGKGKAPPVVTKG
Ga0066669_1157651423300018482Grasslands SoilMKKVLIALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0173482_1027337123300019361SoilMKKVLIALVATLVAVSVSGCAGYGFGKGKAPPPRVVTKG
Ga0210406_1091884623300021168SoilMKKLLFALIATIVAVSVSGCAGMGKGKAPPVVTKG
Ga0126371_1340993423300021560Tropical Forest SoilMKKLLIALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0212123_1000690883300022557Iron-Sulfur Acid SpringMKKLVIALIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0137417_135804243300024330Vadose Zone SoilMKKILVALVATLVAVSVAGCAGIGKARAKAPPPIVTKG
Ga0209171_10003090113300025320Iron-Sulfur Acid SpringMKKLLFALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0207692_1108299013300025898Corn, Switchgrass And Miscanthus RhizosphereVLVALVATLVAVSVSGCVGIGKGKGKAPPPVVTKG
Ga0207700_1179308923300025928Corn, Switchgrass And Miscanthus RhizosphereMKKVLTALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG
Ga0207690_1151674613300025932Corn RhizosphereMNKLLIALVATLVAVSVSGCAGVGKGKAPPPVAAPIVTKG
Ga0207651_1069996423300025960Switchgrass RhizosphereMKKALFALVATLVAVSVSGCAGIGKGKGKAPPPIVTKG
Ga0207677_1062412013300026023Miscanthus RhizosphereSPLIREAVMKKVLIALVASLVAISVSGCAGYGFGKGKAPPPRVVTKG
Ga0209027_115428513300026300Grasslands SoilMKKVLIALVATLVAVSVSGCVGIGKGKGKAPPIVTKG
Ga0208997_101623823300027181Forest SoilLLVALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG
Ga0209419_112992213300027537Forest SoilMKKLLIALVATLVAVSVSGCVGVGKGKCKAPPIVTKG
Ga0209625_111509423300027635Forest SoilMKKILIALVATLVAVSVSACVGIGKGKGKAPPDVLP
Ga0209656_1037702713300027812Bog Forest SoilMKKVLFALIATLVAVSVSGCVGIGKGKAPPVVTKG
Ga0209040_1008909223300027824Bog Forest SoilMKKILFALIATVVAVSVSGCVGVGKGKAPPIVTKG
Ga0209701_1053393423300027862Vadose Zone SoilMKKIFVALVATIVAVGMVGCVGVGKGKAPPIVTKG
Ga0209701_1054423723300027862Vadose Zone SoilAEGIPMKKLLIALVATLVAVSVSGCVGIGKGKGKAPPIVTKG
Ga0209283_1077897313300027875Vadose Zone SoilMKKVLVALVATLVAVSVSGCVGIGKGKGKAPPIVTKG
Ga0307302_1009852433300028814SoilKILVALVATLVAVSVAGCAGIGKGKGKAPPPIVTKG
Ga0318516_1004315923300031543SoilMKKVFVALVATVVAVGMAGCVGIGKGKAPPVVTKG
Ga0318534_1036123923300031544SoilMKKVLFAVIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318560_1002070933300031682SoilMKKLLFALVATVVAVSVSGCVGVGKGKAPPVVTKG
Ga0306918_1002627433300031744SoilMKKVLFALVATIVAVSVSGCVGIGKGKAPPVVTKG
Ga0306918_1054009413300031744SoilMKKLVCALLATVLAFSVAGCAGVGKGKAPPVVTKG
Ga0306918_1093689313300031744SoilGIPMKKLLFALVATLVAVSVSGCVGIGKGKAPPVVTKG
Ga0306918_1125140313300031744SoilMKKIFVALVATIVAIGMAGCVGVGKGKAPPVVTKG
Ga0318509_1081987523300031768SoilMKKLLFALVATLVAVSVSGCVGIGKGKAPPVVTKGLG
Ga0318547_1023639923300031781SoilMKKLLFALVATLVAVSVSGCVGVGKGKAPPIVTKG
Ga0318548_1001688923300031793SoilMKKVLFALVATLVAVSVSGCVGVGNGKAPPVVTKG
Ga0318497_1005185033300031805SoilIPMKKLLFALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318568_1023687523300031819SoilPMKKVLFALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318567_1038529013300031821SoilMLLFDSRQVTEGVTMKKLVCALLATVLAFSVAGCAGVGKGKAPPVVTKG
Ga0310917_1008732353300031833SoilMKKVLFALVATLVAVSVSGCVGIGKGKAPPAVVTKG
Ga0306919_1025302323300031879SoilMKKIFVALVATLVAVGMVGCVGVGKGKAPPVVTKG
Ga0306919_1026594513300031879SoilMKKLVVALLATLVAVSVAGCAGIGKGKARPAVVTKG
Ga0306919_1037173023300031879SoilMKKVLIALIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0306919_1099783723300031879SoilMKKLLFALVATLVAVSVSGCVGIGKGKAPPVVTKG
Ga0306925_1053476523300031890SoilMKKVLIALVATLVAASVSGCVGYGLGKGKAPPPVVTKG
Ga0318536_1001236813300031893SoilEGIPMKKVLFAVIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0306923_1014533443300031910SoilMKKILFALVATLVAVSVSGCVGVGKGKAPPIVTKG
Ga0306921_1232265923300031912SoilMKRVLIALVATLVAASVSGCVGYGLGKGKAPPPVVTKG
Ga0310912_1103366923300031941SoilMKKVLIALIATLVAVSVSGCVGVGTGKAPPVVTKG
Ga0310913_1062777113300031945SoilGYPMKKVLFALVATIVAVSVSGCVGIGKGKAPPVVTKG
Ga0310910_1126915013300031946SoilRGYPMKKVLIALIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0306922_1170591223300032001SoilRQVTEGVTMKKLVCALLATVLAFSVAGCAGVGKGKAPPVVTKG
Ga0318506_1027962423300032052SoilAEGIPMKKVLFAVIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318575_1062912513300032055SoilPMKKIFVALVATLVAVGMVGCVGVGKGKAPPVVTKG
Ga0318505_1040914313300032060SoilCSMKRVLIALVATLVAASVSGCVGYGLGKGKAPPPVVTKG
Ga0318514_1061990623300032066SoilHRGYPMKKVLIALIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318525_1030598023300032089SoilRGYPMKKVLFALVATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0306920_10199924013300032261SoilPMKKVLIALIATLVAVSVSGCVGVGKGKAPPVVTKG
Ga0318519_1101724913300033290SoilKERGIPMKKVLFALVATLVAVSVSGCVGIGKGKAPPPIVRKG
Ga0318519_1107414923300033290SoilMKKVLVVLVATLVAVSVSGCAGIGKGKGKAPPAIVTKG


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