Metagenome / Metatranscriptome Family F038307

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F038307
Family Type	Metagenome / Metatranscriptome
Number of Sequences	166
Average Sequence Length	50 residues
Representative Sequence	MSHLENIATRQRKSLVRDALFVTFVALAAIVSISTVTQAVVASSVVAHR
Number of Associated Samples	121
Number of Associated Scaffolds	166

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	63.25 %
% of genes near scaffold ends (potentially truncated)	28.92 %
% of genes from short scaffolds (< 2000 bps)	87.35 %
Associated GOLD sequencing projects	113
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.651 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (12.651 % of family members)
Environment Ontology (ENVO)	Unclassified (28.313 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.361 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.04% β-sheet: 0.00% Coil/Unstructured: 38.96%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 166 Family Scaffolds
PF14681	UPRTase	63.25
PF07958	DUF1688	13.25
PF01381	HTH_3	1.81
PF00496	SBP_bac_5	1.81
PF07883	Cupin_2	1.20
PF16697	Yop-YscD_cpl	0.60
PF12483	GIDE	0.60
PF04828	GFA	0.60
PF00925	GTP_cyclohydro2	0.60
PF08308	PEGA	0.60
PF02518	HATPase_c	0.60
PF00067	p450	0.60
PF00069	Pkinase	0.60
PF00909	Ammonium_transp	0.60

COG ID	Name	Functional Category	% Frequency in 166 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	2.41
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	0.60
COG0807	GTP cyclohydrolase II	Coenzyme transport and metabolism [H]	0.60
COG2124	Cytochrome P450	Defense mechanisms [V]	0.60
COG3791	Uncharacterized conserved protein	Function unknown [S]	0.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.65 %
Unclassified	root	N/A	37.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.65 %
Unclassified	root	N/A	37.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.65 %
Unclassified	root	N/A	37.35 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.33 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	22.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.89 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	12.05 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	4.82 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	22.89 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	12.05 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	4.22 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	22.89 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	7.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.22 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	1.81 %
unclassified Burkholderiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	22.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.22 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.81 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.60 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.60 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.35 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	22.89 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	4.22 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1.81 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.60 %
Burkholderiales bacterium 8X	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	0.60 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100319792	Not Available	668	Open in IMG/M
3300001686\|C688J18823_10875804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	570	Open in IMG/M
3300004153\|Ga0063455_100202918	All Organisms → cellular organisms → Bacteria → Proteobacteria	983	Open in IMG/M
3300004798\|Ga0058859_11608520	Not Available	571	Open in IMG/M
3300004801\|Ga0058860_11807813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	537	Open in IMG/M
3300004801\|Ga0058860_12157993	Not Available	966	Open in IMG/M
3300005093\|Ga0062594_101513816	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	689	Open in IMG/M
3300005329\|Ga0070683_100551852	All Organisms → cellular organisms → Bacteria → Proteobacteria	1102	Open in IMG/M
3300005329\|Ga0070683_101283717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	704	Open in IMG/M
3300005332\|Ga0066388_102963075	Not Available	868	Open in IMG/M
3300005332\|Ga0066388_104756967	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	691	Open in IMG/M
3300005332\|Ga0066388_104910496	Not Available	680	Open in IMG/M
3300005334\|Ga0068869_100293365	All Organisms → cellular organisms → Bacteria → Proteobacteria	1311	Open in IMG/M
3300005334\|Ga0068869_102121712	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300005340\|Ga0070689_100067917	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2779	Open in IMG/M
3300005340\|Ga0070689_100330996	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300005343\|Ga0070687_100705295	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300005345\|Ga0070692_10639768	All Organisms → cellular organisms → Bacteria	709	Open in IMG/M
3300005439\|Ga0070711_101406957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	607	Open in IMG/M
3300005440\|Ga0070705_100624629	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	837	Open in IMG/M
3300005441\|Ga0070700_101256842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	620	Open in IMG/M
3300005458\|Ga0070681_11487405	Not Available	602	Open in IMG/M
3300005466\|Ga0070685_10652128	Not Available	763	Open in IMG/M
3300005466\|Ga0070685_11073960	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300005530\|Ga0070679_100987101	Not Available	786	Open in IMG/M
3300005534\|Ga0070735_10929073	Not Available	510	Open in IMG/M
3300005617\|Ga0068859_101716136	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300005617\|Ga0068859_102949832	Not Available	520	Open in IMG/M
3300005713\|Ga0066905_102054174	Not Available	531	Open in IMG/M
3300005764\|Ga0066903_102743006	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → unclassified Burkholderiales → Burkholderiales bacterium 8X	956	Open in IMG/M
3300005836\|Ga0074470_11235014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	536	Open in IMG/M
3300005881\|Ga0075294_1035581	Not Available	525	Open in IMG/M
3300005937\|Ga0081455_10225457	All Organisms → cellular organisms → Bacteria → Proteobacteria	1386	Open in IMG/M
3300006028\|Ga0070717_10380551	Not Available	1265	Open in IMG/M
3300006177\|Ga0075362_10352087	Not Available	737	Open in IMG/M
3300006195\|Ga0075366_10191758	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1242	Open in IMG/M
3300006237\|Ga0097621_100461372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1146	Open in IMG/M
3300006755\|Ga0079222_11591192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	619	Open in IMG/M
3300006755\|Ga0079222_12125039	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300006954\|Ga0079219_10782117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	745	Open in IMG/M
3300009098\|Ga0105245_11108899	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	838	Open in IMG/M
3300009101\|Ga0105247_10971047	Not Available	661	Open in IMG/M
3300009156\|Ga0111538_12044970	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300009174\|Ga0105241_12450035	Not Available	522	Open in IMG/M
3300009177\|Ga0105248_10956855	Not Available	967	Open in IMG/M
3300009553\|Ga0105249_13103859	All Organisms → cellular organisms → Bacteria → Proteobacteria	534	Open in IMG/M
3300009792\|Ga0126374_10402950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	957	Open in IMG/M
3300010046\|Ga0126384_10943390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	782	Open in IMG/M
3300010046\|Ga0126384_12201234	Not Available	531	Open in IMG/M
3300010047\|Ga0126382_11421643	Not Available	634	Open in IMG/M
3300010337\|Ga0134062_10375933	Not Available	690	Open in IMG/M
3300010358\|Ga0126370_10784905	Not Available	847	Open in IMG/M
3300010360\|Ga0126372_11592143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	692	Open in IMG/M
3300010362\|Ga0126377_10972551	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M
3300010399\|Ga0134127_10237195	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1719	Open in IMG/M
3300010399\|Ga0134127_12457069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	601	Open in IMG/M
3300010400\|Ga0134122_12097677	Not Available	606	Open in IMG/M
3300010400\|Ga0134122_12937708	All Organisms → cellular organisms → Bacteria → Proteobacteria	531	Open in IMG/M
3300010401\|Ga0134121_10005062	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	10738	Open in IMG/M
3300010403\|Ga0134123_10489579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1154	Open in IMG/M
3300010403\|Ga0134123_10886496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	896	Open in IMG/M
3300010403\|Ga0134123_12106355	Not Available	624	Open in IMG/M
3300011431\|Ga0137438_1033920	Not Available	1495	Open in IMG/M
3300011431\|Ga0137438_1078818	All Organisms → cellular organisms → Bacteria	993	Open in IMG/M
3300011438\|Ga0137451_1011413	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2570	Open in IMG/M
3300011438\|Ga0137451_1091459	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300011442\|Ga0137437_1002083	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	7075	Open in IMG/M
3300011442\|Ga0137437_1083445	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1092	Open in IMG/M
3300012212\|Ga0150985_100206675	Not Available	1240	Open in IMG/M
3300012212\|Ga0150985_103990582	Not Available	616	Open in IMG/M
3300012212\|Ga0150985_107507788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	810	Open in IMG/M
3300012212\|Ga0150985_114809684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	611	Open in IMG/M
3300012212\|Ga0150985_120105753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	815	Open in IMG/M
3300012212\|Ga0150985_121151376	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	737	Open in IMG/M
3300012469\|Ga0150984_113795836	All Organisms → cellular organisms → Bacteria → Proteobacteria	526	Open in IMG/M
3300012469\|Ga0150984_116588098	Not Available	1364	Open in IMG/M
3300012469\|Ga0150984_123233565	Not Available	658	Open in IMG/M
3300012924\|Ga0137413_10937094	Not Available	675	Open in IMG/M
3300012924\|Ga0137413_11278201	Not Available	588	Open in IMG/M
3300012929\|Ga0137404_10698864	Not Available	917	Open in IMG/M
3300012930\|Ga0137407_11998581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	553	Open in IMG/M
3300012957\|Ga0164303_10587874	All Organisms → cellular organisms → Bacteria → Proteobacteria	730	Open in IMG/M
3300012971\|Ga0126369_13012473	Not Available	551	Open in IMG/M
3300014325\|Ga0163163_10292069	All Organisms → cellular organisms → Bacteria	1682	Open in IMG/M
3300018051\|Ga0184620_10135784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	786	Open in IMG/M
3300018083\|Ga0184628_10410218	Not Available	707	Open in IMG/M
3300018476\|Ga0190274_12328019	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300019269\|Ga0184644_1232056	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	579	Open in IMG/M
3300019874\|Ga0193744_1006663	All Organisms → cellular organisms → Bacteria → Proteobacteria	2112	Open in IMG/M
3300019880\|Ga0193712_1029623	Not Available	1176	Open in IMG/M
3300019880\|Ga0193712_1080609	Not Available	710	Open in IMG/M
3300021082\|Ga0210380_10334792	Not Available	690	Open in IMG/M
3300021445\|Ga0182009_10304936	All Organisms → cellular organisms → Bacteria → Proteobacteria	803	Open in IMG/M
3300022530\|Ga0242658_1178349	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	565	Open in IMG/M
3300022530\|Ga0242658_1200900	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300022531\|Ga0242660_1240061	All Organisms → cellular organisms → Bacteria → Proteobacteria	513	Open in IMG/M
3300022718\|Ga0242675_1085802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	585	Open in IMG/M
3300022721\|Ga0242666_1054872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	848	Open in IMG/M
3300022756\|Ga0222622_10892134	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	652	Open in IMG/M
3300023270\|Ga0247784_1074281	All Organisms → cellular organisms → Bacteria	849	Open in IMG/M
3300025899\|Ga0207642_10038118	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2077	Open in IMG/M
3300025905\|Ga0207685_10694424	Not Available	553	Open in IMG/M
3300025912\|Ga0207707_11643126	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300025918\|Ga0207662_10064033	All Organisms → cellular organisms → Bacteria → Proteobacteria	2211	Open in IMG/M
3300025918\|Ga0207662_10746269	Not Available	688	Open in IMG/M
3300025921\|Ga0207652_10686618	Not Available	914	Open in IMG/M
3300025924\|Ga0207694_11556337	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	558	Open in IMG/M
3300025930\|Ga0207701_11078198	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	667	Open in IMG/M
3300025936\|Ga0207670_10075398	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2344	Open in IMG/M
3300025936\|Ga0207670_11222980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	636	Open in IMG/M
3300025942\|Ga0207689_10371336	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1190	Open in IMG/M
3300025942\|Ga0207689_11452074	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	574	Open in IMG/M
3300025944\|Ga0207661_11273478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	676	Open in IMG/M
3300026088\|Ga0207641_10092635	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2647	Open in IMG/M
3300026088\|Ga0207641_11058414	Not Available	809	Open in IMG/M
3300027986\|Ga0209168_10631375	Not Available	511	Open in IMG/M
3300028293\|Ga0247662_1106645	Not Available	513	Open in IMG/M
3300028380\|Ga0268265_11336651	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300028381\|Ga0268264_11398802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	710	Open in IMG/M
3300028381\|Ga0268264_12412268	Not Available	532	Open in IMG/M
3300028732\|Ga0302264_1000818	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	8306	Open in IMG/M
3300028741\|Ga0302256_10000006	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	32608	Open in IMG/M
3300028786\|Ga0307517_10057443	All Organisms → cellular organisms → Bacteria → Proteobacteria	3769	Open in IMG/M
3300028794\|Ga0307515_10006000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	24459	Open in IMG/M
3300028870\|Ga0302254_10310931	Not Available	582	Open in IMG/M
3300029923\|Ga0311347_10371234	All Organisms → cellular organisms → Bacteria → Proteobacteria	872	Open in IMG/M
3300029989\|Ga0311365_10944553	Not Available	745	Open in IMG/M
3300030002\|Ga0311350_10700570	Not Available	909	Open in IMG/M
3300030010\|Ga0302299_10666236	Not Available	512	Open in IMG/M
3300030050\|Ga0302255_1013654	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	1488	Open in IMG/M
3300030521\|Ga0307511_10333104	Not Available	663	Open in IMG/M
3300030904\|Ga0308198_1089155	Not Available	528	Open in IMG/M
3300030905\|Ga0308200_1065980	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	709	Open in IMG/M
3300031093\|Ga0308197_10068284	Not Available	971	Open in IMG/M
3300031093\|Ga0308197_10296118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	594	Open in IMG/M
3300031094\|Ga0308199_1090026	Not Available	662	Open in IMG/M
3300031200\|Ga0307496_10001030	All Organisms → cellular organisms → Bacteria → Proteobacteria	2496	Open in IMG/M
3300031232\|Ga0302323_100001263	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	20544	Open in IMG/M
3300031232\|Ga0302323_102975832	Not Available	541	Open in IMG/M
3300031238\|Ga0265332_10066224	All Organisms → cellular organisms → Bacteria	1542	Open in IMG/M
3300031421\|Ga0308194_10258128	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	587	Open in IMG/M
3300031456\|Ga0307513_10044442	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	4866	Open in IMG/M
3300031474\|Ga0170818_100465512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	582	Open in IMG/M
3300031507\|Ga0307509_10037163	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5325	Open in IMG/M
3300031507\|Ga0307509_10044573	All Organisms → cellular organisms → Bacteria → Proteobacteria	4791	Open in IMG/M
3300031507\|Ga0307509_10054345	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	4265	Open in IMG/M
3300031507\|Ga0307509_10395417	All Organisms → cellular organisms → Bacteria → Proteobacteria	1091	Open in IMG/M
3300031616\|Ga0307508_10798007	Not Available	561	Open in IMG/M
3300031715\|Ga0307476_10095335	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2094	Open in IMG/M
3300031720\|Ga0307469_10498140	Not Available	1067	Open in IMG/M
3300031720\|Ga0307469_11084252	Not Available	752	Open in IMG/M
3300031726\|Ga0302321_103447234	All Organisms → cellular organisms → Bacteria → Proteobacteria	514	Open in IMG/M
3300031938\|Ga0308175_100000136	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	56323	Open in IMG/M
3300031938\|Ga0308175_101306510	Not Available	808	Open in IMG/M
3300032180\|Ga0307471_104013179	Not Available	520	Open in IMG/M
3300033557\|Ga0316617_100225278	All Organisms → cellular organisms → Bacteria → Proteobacteria	1518	Open in IMG/M
3300034643\|Ga0370545_013517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1277	Open in IMG/M
3300034643\|Ga0370545_036738	Not Available	905	Open in IMG/M
3300034643\|Ga0370545_062440	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	747	Open in IMG/M
3300034643\|Ga0370545_086909	Not Available	662	Open in IMG/M
3300034643\|Ga0370545_128394	Not Available	573	Open in IMG/M
3300034644\|Ga0370548_065169	Not Available	678	Open in IMG/M
3300034644\|Ga0370548_134478	All Organisms → cellular organisms → Bacteria → Proteobacteria	525	Open in IMG/M
3300034659\|Ga0314780_198118	Not Available	523	Open in IMG/M
3300034681\|Ga0370546_027986	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	786	Open in IMG/M
3300034681\|Ga0370546_073306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	72.29%
Host-Associated	Host-Associated	27.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.06%
Plants	Host-Associated → Plants	25.90%
Aquatic	Environmental → Aquatic	7.23%
Human	Host-Associated → Human	1.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.45%
Roots	Host-Associated → Plants → Roots	7.83%
Peat	Environmental → Terrestrial → Peat	6.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.63%
Sediment	Environmental → Aquatic → Sediment	6.02%
Digestive System	Host-Associated → Human → Digestive System	1.81%
Freshwater	Environmental → Aquatic → Freshwater	1.20%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.16%
Loam	Environmental → Terrestrial → Soil → Loam	17.47%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.02%
Unclassified	Host-Associated → Plants → Roots → Unclassified	5.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.61%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.41%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.81%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.20%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.20%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.20%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	13.25%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.63%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.63%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.02%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	5.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.22%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.01%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.41%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	1.81%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.81%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.20%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.20%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.20%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.20%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.20%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.65%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	6.63%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	5.42%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	5.42%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.82%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.22%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	4.22%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	3.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.61%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	3.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	3.01%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	3.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.81%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	1.81%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.81%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.81%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.81%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.20%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.20%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.20%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.20%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.20%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.20%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	0.60%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.60%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.60%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.60%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.60%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.60%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.60%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.60%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.60%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004798	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004801	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300005881	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_202	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006177	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011431	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2	Environmental	Open in IMG/M
3300011438	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT500_2	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019874	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1a1	Environmental	Open in IMG/M
3300019880	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021445	Bulk soil microbial communities from the field in Mead, Nebraska, USA - 072115-187_1 MetaG	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300023270	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L169-409R-5	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027986	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028293	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK03	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028732	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N3_4	Environmental	Open in IMG/M
3300028741	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E3_4	Environmental	Open in IMG/M
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030002	II_Fen_N1 coassembly	Environmental	Open in IMG/M
3300030010	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_4	Environmental	Open in IMG/M
3300030050	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E2_4	Environmental	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030904	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_202 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030905	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031200	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 9_S	Environmental	Open in IMG/M
3300031232	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031421	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M
3300034643	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034644	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_123 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1003197923	3300000364	Soil	MSHLDNIAMRQRKSLVRDALFIAFVALAAIVSISTVTEAVVASSVVAHR*
C688J18823_108758041	3300001686	Soil	MSHLQNIATRQRKSIVRDAFFAVVVAIAAVISISTVGQAVQASSIVAHR*
Ga0063455_1002029182	3300004153	Soil	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVTQAVVASA
Ga0058859_116085201	3300004798	Host-Associated	MSRLDNIATRQRKSLLRDALFASFVALAAIVSITTVTQVAAASSTVAHR*
Ga0058860_118078132	3300004801	Host-Associated	QRPQNRKPEMSHLQNIATRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR*
Ga0058860_121579931	3300004801	Host-Associated	MSHLDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVAAHR*
Ga0062594_1015138161	3300005093	Soil	MSHLQNIATRQRKGMLRDVVFVTLVALATVVSASTVSTAVQASSLIAHR*
Ga0070683_1005518522	3300005329	Corn Rhizosphere	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVTQAVVASSPNQHR*
Ga0070683_1012837171	3300005329	Corn Rhizosphere	MSHLENIAMRQRRSRVRDALFAAFVALAAITAVTTVTQAVVASSPSQHR*
Ga0066388_1029630752	3300005332	Tropical Forest Soil	MNHLQNIAKRQRRNLLRDALFATFIALAAIVSITTVTQAVVASAMQHH*
Ga0066388_1047569671	3300005332	Tropical Forest Soil	MSHLDNIATRQRKSLLRDALFVALVAIATIVSASTVTTAVQASSLVAHR*
Ga0066388_1049104962	3300005332	Tropical Forest Soil	MSHLQNIAKRQRRSLIRDALFAAFIAVAAIVSITTVTQAVVASARLHR*
Ga0068869_1002933651	3300005334	Miscanthus Rhizosphere	MSHLENIATRQRSGLLRDAIFATIVAIAAIVSISTVTQAVEASSHTLPR*
Ga0068869_1021217121	3300005334	Miscanthus Rhizosphere	MGFSSAAMPQNRKSEMSHLQNIATRQRTGLIRDVVFVTLVAIATIVSASTVTTAV
Ga0070689_1000679174	3300005340	Switchgrass Rhizosphere	MSHLDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVVAHR*
Ga0070689_1003309961	3300005340	Switchgrass Rhizosphere	MSHLQNIATRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR*
Ga0070687_1007052951	3300005343	Switchgrass Rhizosphere	MSHLENIATRQRKGLVRDALFATLVAFAAFVSISTVTQAVVASSVVTHR*
Ga0070692_106397682	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLENIATRQRKSRVRDALFATFVALAAITAVTTVTKAVVASSPSQHR*
Ga0070711_1014069572	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSYLENIETRQRKSRIRDALFALFVALAAITAVTTVTKAVVMSSQSQHR*
Ga0070705_1006246292	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MNYLQNIAKRQRRNLLRDALFATFIALAAIVSITTVTQAVVASAMQHH*
Ga0070700_1012568421	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	ATRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR*
Ga0070681_114874051	3300005458	Corn Rhizosphere	ATRQRKSLVRDTLFATFVALAAIVSITTVTKAVVASSASLHR*
Ga0070685_106521281	3300005466	Switchgrass Rhizosphere	RQRKSLLRDALFASFVALAAIVSITTVTQVAAASSTVAHR*
Ga0070685_110739601	3300005466	Switchgrass Rhizosphere	MSHLDNIATRQRKGLVRDAFFAAFIALAAIVSITTVTKAVVASSVVAHR*
Ga0070679_1009871012	3300005530	Corn Rhizosphere	MSYLENIATRQRRSRVRDALFATFVALAAITAVTTVTKAVVASAPSQHR*
Ga0070735_109290731	3300005534	Surface Soil	MSYLENIATRQRRSRVRDALFAAFVALAAITAVTTVTQAVVASSPSHHR*
Ga0068859_1017161361	3300005617	Switchgrass Rhizosphere	MSHLQNIATRQRKGMLRDVVFVTLVALATVVSASTVSTAVQASSLVAHR*
Ga0068859_1029498321	3300005617	Switchgrass Rhizosphere	MSHLDSIATRQRKSLVRDALFAALVALAAIVSITTVTQ
Ga0066905_1020541742	3300005713	Tropical Forest Soil	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVTQAVVASSPILHR*
Ga0066903_1027430061	3300005764	Tropical Forest Soil	MSHLQNIATRQRKSLVRDALFATFVALATIVSITTVTQAVVASSATLHR*
Ga0074470_112350142	3300005836	Sediment (Intertidal)	MNHLDSITSRQRKSLVRDALFAAFVALAAIVSVTTVTQVAAASSAVARR*
Ga0075294_10355812	3300005881	Rice Paddy Soil	MSHLENIATRQRIGLLRDVLFVALLAIATAVSASTVSKAVEASSAIVHR*
Ga0081455_102254572	3300005937	Tabebuia Heterophylla Rhizosphere	MSHLQNIATRQRKGLVRDALFVTFVALAAIVSASTVTTAVQASSLVAHR*
Ga0070717_103805513	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSHLDNIATRQRKSLVRDALFATFVALAAVVAISTVTQAVAASSVVAHR*
Ga0075362_103520871	3300006177	Populus Endosphere	MRHLENIETRQRKSLVRDALFAMFVAIAAITAITTVSQAVVASAPIQHR*
Ga0075366_101917582	3300006195	Populus Endosphere	MSRLDNIATRQRQSLVRDALFATFVALAAIVSISTVSQAVRASAQITQR*
Ga0097621_1004613722	3300006237	Miscanthus Rhizosphere	MSRLDNIATRQRQSLVRDALFATFVALAAIVSISTVSQAVRASAQTTQR*
Ga0079222_115911922	3300006755	Agricultural Soil	MSHLQNIETRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR*
Ga0079222_121250392	3300006755	Agricultural Soil	MSHLENIAMRQRRSRVRDALFAAFVALAAITAVTTVTTAVVASSPSQHR*
Ga0079219_107821171	3300006954	Agricultural Soil	HNRKSEMSHLQNIETRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR*
Ga0105245_111088991	3300009098	Miscanthus Rhizosphere	MSHLENIASRQRKSRVRDALFATFVALAAITAITTVSQAVVASSPNQHR*
Ga0105247_109710472	3300009101	Switchgrass Rhizosphere	MSYLENIATRQRKSRVRDALFAMFVALAAITAVTTVTKAVVASSTSQHR*
Ga0111538_120449702	3300009156	Populus Rhizosphere	MSHLENIATRQRSGLLRDAIFATIVAIAAIVSISTVTQAVEA
Ga0105241_124500351	3300009174	Corn Rhizosphere	MSHLENIATRQRSGLLRDAIFATIVAIAAIVSISTVTQAVEASSHTL
Ga0105248_109568551	3300009177	Switchgrass Rhizosphere	MSYLENIATRQRKSRVRDALFAMFVALAAITAVTTVTKAVVASSPNQHR*
Ga0105249_131038592	3300009553	Switchgrass Rhizosphere	SKMSHLDSITARQRKSRVRDALFAAFIALAAIVSISTLAQAVLASSVATHH*
Ga0126374_104029503	3300009792	Tropical Forest Soil	MRHLENIATRQRKSLVRDALFALFVALAAITAITTVTQAVVASSASQHR*
Ga0126384_109433901	3300010046	Tropical Forest Soil	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVTQAVVASSPSQHR*
Ga0126384_122012341	3300010046	Tropical Forest Soil	MGHLENIAIRQRKSLVRDALFVTLVALATVVSISTFTKAVEASAVVAHR*
Ga0126382_114216432	3300010047	Tropical Forest Soil	RHCRTNRKSNMRYLENIEKRQRKNLVRDALFATFIALAAIVSIATVTQAVVASSTAMHR*
Ga0134062_103759332	3300010337	Grasslands Soil	MSYLQNIEKRQRRSLVRDALFATFVALATIVSVTTVAQAVLASATAVHR*
Ga0126370_107849051	3300010358	Tropical Forest Soil	MSYLQNIAKRQRRSLVRDALFATFIALTAIVSITTVTQAVVASARLHH*
Ga0126372_115921432	3300010360	Tropical Forest Soil	MSYLENIATRQRKSRVRDALFAAFVALAAITAVTTVTKAVVASSPSQHR*
Ga0126377_109725512	3300010362	Tropical Forest Soil	MSNMNYLQNIAKRQRRNLLRDALFATFIALAAIVSITTVTQAVVASAMQHH*
Ga0134127_102371951	3300010399	Terrestrial Soil	MGFSSAAMPQNRKSDMSHLQNIATRQRTGLIRDVVFVTLVAIATIVSASTVTTAVKASSLVAHR*
Ga0134127_124570691	3300010399	Terrestrial Soil	QETDMSHLQNIATRQRKGMLRDVVFVTLVALATVVSASTVSTAVQASSLIAHR*
Ga0134122_120976772	3300010400	Terrestrial Soil	MSHLENIATRQRKSIVRDAFFAALVAIAAILSISTVSQAVQASSIVAHR*
Ga0134122_129377081	3300010400	Terrestrial Soil	SRNMRHLENIETRQRKSLVRDALFAMFVAIATITAITTVSQAVVASAPIQHR*
Ga0134121_100050622	3300010401	Terrestrial Soil	MSHLDNIATRQRKSLVRDALFVAFVALAAIVSISTVTKAVVPSSVVAHR*
Ga0134123_104895791	3300010403	Terrestrial Soil	MNHLEAIEARQRKSLLRDALFVALLAFATIVSVAPFTNAIVASAVVAHR*
Ga0134123_108864962	3300010403	Terrestrial Soil	MGFSSAAMPQNRKSEMSHLQNIATRQRTGLIRDVVFVTLVAIATIVSASTVTTAVKASSLVAHR*
Ga0134123_121063551	3300010403	Terrestrial Soil	MSYLENIATRQRKSRVRDALFAMFVALAAITAVTTVTKAVVASSPSQHR*
Ga0137438_10339204	3300011431	Soil	MSHLENIATRQRKSLVRDALFAALVAIATVVSVSTVTQAVEASSVAAHR*
Ga0137438_10788182	3300011431	Soil	MSHLDNIATRQRKSLVRDAIFAAFVAFATIMSISTVSTAVEASSTLVAHR*
Ga0137451_10114132	3300011438	Soil	MSHLENIATRQRKSLVRDALFVTFVALASIVSISTVTQAVVASSVVAHR*
Ga0137451_10914592	3300011438	Soil	MSHLDNIATRQRKSLVRDALFATLVALAAIVSISTVTQAVAASSVVAHR*
Ga0137437_10020834	3300011442	Soil	MSHLENIATRQRKSLVRDALFVTFVALAAIVSISTVTQAVVASSVVAHG*
Ga0137437_10834453	3300011442	Soil	SHLENIAKRQRKSLVRDAIFATFVALATIVSITTVTQVVVAGSALR*
Ga0150985_1002066752	3300012212	Avena Fatua Rhizosphere	MSHLENIATRQKKSLVRDALFATFVALAAIVSISTVTQVAAASSAVAHR*
Ga0150985_1039905821	3300012212	Avena Fatua Rhizosphere	HLENIATRQRKSRVRDALFATFVALAAITAVTTVTRAVVASSPNQHR*
Ga0150985_1075077881	3300012212	Avena Fatua Rhizosphere	LPQKRETNMSHLDNIAIRQRKSLVRDALFAALVAVAAFVSISTVGQAAQASSIVAHR*
Ga0150985_1148096841	3300012212	Avena Fatua Rhizosphere	HRAANRKSPKMSHLQNIATRQRKSIVRDAFFAVVVAIAAVISISTVGQAVQASSIVAHR*
Ga0150985_1201057532	3300012212	Avena Fatua Rhizosphere	MSHLQNIATRQRKSLVRDALFAALVVVATILSISMVGQVVQASSIIAHR*
Ga0150985_1211513762	3300012212	Avena Fatua Rhizosphere	AAPTGSRTMNKLQNIAARQRKSLVRDALFATFVALAAVVAASTVTQAVVAGAQFQHR*
Ga0150984_1137958362	3300012469	Avena Fatua Rhizosphere	MNKLQNIAARQRKSLVRDALFATFVALAAVVAASTVTQAVVAGAQFQHR*
Ga0150984_1165880981	3300012469	Avena Fatua Rhizosphere	MSHLENIATRQKHSLVRDALFAAFVALAAIVSISTVSQCASASSTVAHR*
Ga0150984_1232335651	3300012469	Avena Fatua Rhizosphere	AAQQEVETMNKLQNIAARQRNGLVRDALFVTVVAFAAIVSASTVTQAVVASAQFQHR*
Ga0137413_109370941	3300012924	Vadose Zone Soil	MSHLENIATRQRKSLVRDTLFVALVALATVVSASTVSQAVKASAIVAHR*
Ga0137413_112782011	3300012924	Vadose Zone Soil	MPQKRKSQMSHLENIAIRQRKSLVRDALFASFVALATIVSITTVTQVAAASSTVAHR*
Ga0137404_106988643	3300012929	Vadose Zone Soil	MSHLQDIATRQRHSLVLDALFVALLALAAIVAATTVTQAVKASSIAAPR*
Ga0137407_119985811	3300012930	Vadose Zone Soil	MTRLDNIATRQRKSLVRDALFATLVALAAIVSISTVSQAVRASAQITQR*
Ga0164303_105878742	3300012957	Soil	MNRLDTIASRQRKSRVRDVLFAALVAVAAAVSISSMHTAIVASSQIAHG*
Ga0126369_130124731	3300012971	Tropical Forest Soil	MSKLQNIAKRQRRSLIRDALFAAFIAVAAIVSITTVTQAVVASASLHR*
Ga0163163_102920694	3300014325	Switchgrass Rhizosphere	MSHLDNIATRQRKSRVRDALFATFVALAAITAVTTVTKAVVASSPSQHR*
Ga0184620_101357842	3300018051	Groundwater Sediment	MSHLDNIATRQRKSLVRDALFATFVALAAIVSITTVTQVAAAGCAVAHR
Ga0184628_104102181	3300018083	Groundwater Sediment	MSHLENIATRQRKSLVRDALFVTFVALAAIVSISTVTQAVVASSVVAHR
Ga0190274_123280192	3300018476	Soil	MSHLQNIATRQRNGLLRDALFATLVAIATIVSASTVTTAVQASALVAHR
Ga0184644_12320562	3300019269	Groundwater Sediment	GRITGSHHMSHLENIATRQRKSIVRDAFFAALVAIAAILSISTVGQAVQASSIVAHR
Ga0193744_10066632	3300019874	Soil	MSHLENIAKRQRKSLVRDAIFATFVALATIVSITTVTQVVVAGSALR
Ga0193712_10296232	3300019880	Soil	MSHLENIATRQRTGLVRDALFVTLVALATIVSVSTVSQAVKASSVVAHFVHR
Ga0193712_10806091	3300019880	Soil	GFSSAATLQNRKPDMSHLENIENRQRKSLLRDAVFVALVAIATIVSASTVTTAVQASSLVAHR
Ga0210380_103347923	3300021082	Groundwater Sediment	MSHLENIATRQRKSLVRDALFVTFVALAAIVSVSTVTQA
Ga0182009_103049361	3300021445	Soil	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVTQAVVASAPNHR
Ga0242658_11783492	3300022530	Soil	SPAEQEVATMSHLENIATRQRKSLVRDAFFAALVAVMAAVSISTLGHVAVQTGTMIAHR
Ga0242658_12009001	3300022530	Soil	ASPGKLDMTRLDNIATRQRKSLVRDALFATLVALAAIVSISTVSQAVRMSSQTTQR
Ga0242660_12400611	3300022531	Soil	REQRREVRMNRLDTIASRQRKSRVRDALFAALIAVAAAVSISSMHTAIVASSQIAHG
Ga0242675_10858021	3300022718	Soil	TAAPTGSWNMRYLENIATRQRRSRVRDALFATFVALAAITAVTTVTQAVVASSPILHR
Ga0242666_10548721	3300022721	Soil	TMSHLENIATRQRKSLVRDAFFAALVAVMAAVSISTLGHVAVQTGTMIAHR
Ga0222622_108921342	3300022756	Groundwater Sediment	IMSHLQNIATRQRKGLLRDAFFVAALALAAIVSATSVTKAVEASSVIAHR
Ga0247784_10742813	3300023270	Plant Litter	MKRGFLAAALAAETGSLNMSHLESIATRQRQGRLRDVLFVAIVAIAAVVSTSTVSQAVHASSIVAHR
Ga0207642_100381182	3300025899	Miscanthus Rhizosphere	MSHLENIATRQRSGLLRDAIFATIVAIAAIVSISTVTQAVEASSHTLPR
Ga0207685_106944241	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MSHLDNIATRQRKSLVRDALFVAFVALAAIVSISTVTKAVVPSSVVAHR
Ga0207707_116431262	3300025912	Corn Rhizosphere	MNKLQNIAARQRKSLVRDALFATFVALAVIVSASTVTQAVVASAQFQHR
Ga0207662_100640333	3300025918	Switchgrass Rhizosphere	MSHLQNIATRQRKGMLRDVVFVTLVALATVVSASTVSTAVQASSLIAHR
Ga0207662_107462692	3300025918	Switchgrass Rhizosphere	LDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVVAHR
Ga0207652_106866182	3300025921	Corn Rhizosphere	MSYLENIATRQRRSRVRDALFATFVALAAITAVTTVTKAVVASAPSQHR
Ga0207694_115563372	3300025924	Corn Rhizosphere	MSHLENIATRQRKSRVRDALFAAFVALAAITAVTTVSQAVVASSPSQHR
Ga0207701_110781981	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	SHLENIAMRQRRSRVRDALFAAFVALAAITAVTTVTQAVVASSPSQHR
Ga0207670_100753984	3300025936	Switchgrass Rhizosphere	MSHLDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVVAHR
Ga0207670_112229802	3300025936	Switchgrass Rhizosphere	MSHLQNIATRQRNGLLRDALFVALVAIATIVSASTVTTAVQASALVAHR
Ga0207689_103713362	3300025942	Miscanthus Rhizosphere	MGHLESIATRQRKSLVRDAMFAALVTLAAIVSISSVGKAVQASSATVHTSSPALVAHR
Ga0207689_114520742	3300025942	Miscanthus Rhizosphere	HLQNIATRQRKSLLRDALFATFVALAAIVSASTVTTAVQASSLVAHR
Ga0207661_112734781	3300025944	Corn Rhizosphere	MSHLENIAMRQRRSRVRDALFAAFVALAAITAVTTVTQAVVASSPSQHR
Ga0207641_100926354	3300026088	Switchgrass Rhizosphere	MSHLDNIATRQRKGLVRDAFFAAFIALAAIVSITTVTKAVVASSVVAHR
Ga0207641_110584141	3300026088	Switchgrass Rhizosphere	MNYLQNIAKRQRRNLLRDALFATFIALAAIVSITTVTQAVVASAMQHH
Ga0209168_106313751	3300027986	Surface Soil	MSYLENIATRQRRSRVRDALFAAFVALAAITAVTTVTQAVVASSPSHHR
Ga0247662_11066451	3300028293	Soil	MSYLENIATRQRKSRVRDALFAMFVALAAITAVTTVTKAVVASSTSQHR
Ga0268265_113366511	3300028380	Switchgrass Rhizosphere	MSHLENIATRQRSGLLRDAIFATIVAIAAIVSISTV
Ga0268264_113988022	3300028381	Switchgrass Rhizosphere	MNYLQNIAKRQRRNLLRDALFATFIALAAIMSITTVTQAVVASAMQHH
Ga0268264_124122681	3300028381	Switchgrass Rhizosphere	MSHLDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVAAHR
Ga0302264_10008182	3300028732	Fen	MNHLDSIASRQRKSLVRDAFFAALVAVAAFVSISTVGQAVHASSIVAHR
Ga0302256_1000000620	3300028741	Fen	MNHLDSIATRQRKSLVRDAFFAALVAVAAFVSISTVGQAVHASSIVAHR
Ga0307517_100574434	3300028786	Ectomycorrhiza	MSHLQNIATRQRKSLVRDVLFATLVALAAVVSVSTVSQAVHASSIVAHR
Ga0307515_100060009	3300028794	Ectomycorrhiza	MSHLENIATRQRKSLVRDALFATFVALAAIVSITSVSKAVAASSATLHH
Ga0302254_103109311	3300028870	Fen	MSHLENIAIRQRKSLVRDALFAALVAVAAFVSISTVGQAVQA
Ga0311347_103712342	3300029923	Fen	MTHLDQIATRQRKSLVRDAVFAVIVAFAAIVSASTVSQVAAANATIAHR
Ga0311365_109445532	3300029989	Fen	MSHLENIAIRQRKSLVRDALFAALVAVAAFVSISTVGQAVQASSIVAHR
Ga0311350_107005701	3300030002	Fen	MNHLDNITSRQRKSLVRDALFATFVALAAIVSVTTVTQVAAASSAVAHR
Ga0302299_106662361	3300030010	Fen	MSHLDNIAIRQRKSLVRDALFAALVAVAAFVSISTVGQAV
Ga0302255_10136543	3300030050	Fen	NMNHLDSIASRQRKSLVRDAFFAALVAVAAFVSISTVGQAVHASSIVAHR
Ga0307511_103331042	3300030521	Ectomycorrhiza	MSHLHNIATRQRNGLVRDALFAGFVALATISAVTTVTKAVVASAAVQHTHRS
Ga0308198_10891551	3300030904	Soil	HNRKSRNMSHLENIATRQRKSIVRDAFFAALVAIAAILSISTVSQAVQASSIVAHR
Ga0308200_10659801	3300030905	Soil	PQNRKSEMSHLQNIATRQRKGLLRDALFVTFVALATIVSASTVTTAVQASSLVAHR
Ga0308197_100682841	3300031093	Soil	QTESLNMKHLDNIATRQRKSLVRDAFFAALVAVAAFVSISTVGQAVHASSIVAHR
Ga0308197_102961181	3300031093	Soil	NAGQKRKSDMSHLENIATRQRKSLLRDALFVALVGIATIVSASTVTTAVRASSLVAHR
Ga0308199_10900262	3300031094	Soil	ATRQRKSLVRDALFAMLIALAAIVSISTVGQAVVASSATMHR
Ga0307496_100010303	3300031200	Soil	MSYLQNIATRQRKGLVRDALFATFIALAAIVSISTVGQAVVASSTTLHR
Ga0302323_10000126318	3300031232	Fen	RQRKSLVRDAFFAALVAVAAFVSISTVGQAVHASSIVAHR
Ga0302323_1029758321	3300031232	Fen	MSHLENIATRQRKSLVRDAIFATLVALVAIVSVSTVTQAV
Ga0265332_100662243	3300031238	Rhizosphere	MRYLENIATRQRKSLVRDALFATFVALAAITAVTTVTHAVVMSSSIQHR
Ga0308194_102581281	3300031421	Soil	MSHLENIATRQRKSIVRDAFFAALVAIAAILSISTVGQAVQASSIVAHR
Ga0307513_100444425	3300031456	Ectomycorrhiza	RKSQMSHLDNIAIRQRKSLVRDALFATFVALATIVSITTVTQVAAASSTVAHR
Ga0170818_1004655121	3300031474	Forest Soil	AATGSRNMRHLDDITMRQRKSLVRDALFATFIALAAVVSITTVSKAVVASSTIQHR
Ga0307509_100371634	3300031507	Ectomycorrhiza	MSHLENIATRQKKSLVRDALFATFVALAAIVSISTVTQVAAASSAVAHR
Ga0307509_100445736	3300031507	Ectomycorrhiza	MNKLQNIAARQRKSLVRDALFATFVALAAVVAASTVTQAVVPGAQFQHR
Ga0307509_100543454	3300031507	Ectomycorrhiza	MSHLENIATRQRKSLVRDAIFATFVALAAIVSITTVTQVVVAGSALR
Ga0307509_103954171	3300031507	Ectomycorrhiza	MSHLQNIATRQRKSLVRDVLFATLVALAAIVSVSTVSQAVHASSIVAHR
Ga0307508_107980072	3300031616	Ectomycorrhiza	MNHLDNIASRQRKSLVRDALFATFVALAAIVSVTTVTQVAAANAAVAHR
Ga0307476_100953352	3300031715	Hardwood Forest Soil	MSHLENIATRQRKSRVRDALFATFVALAAITAVTTVSQAVVASSPSQHR
Ga0307469_104981402	3300031720	Hardwood Forest Soil	MSHLENIATRQRKSRIRDALFATFVALAAITAASTVTKAVVASAPGQHR
Ga0307469_110842522	3300031720	Hardwood Forest Soil	MSHLDNIATRQRKGLVRDALFAAFIALAAIVSITTVTKAVVASSVVAHG
Ga0302321_1034472342	3300031726	Fen	MSHLENIATRQRKSLVRDAIFATLVALVAIVSVSTVTQAVEASCVVAHR
Ga0308175_10000013638	3300031938	Soil	MSHLDNIAARHRKGLVRDAFFAAFIALAAIASITTVTKAVVASAVVAHR
Ga0308175_1013065101	3300031938	Soil	MNKLQNIAARQRKSLVRDALFATFVALAAIVSATTVTQAVVASAQFQHR
Ga0307471_1040131791	3300032180	Hardwood Forest Soil	MSYLENIATRQRKSRIRDALFATFVALAAITALTTVTKAVVMSSPSQHR
Ga0316617_1002252782	3300033557	Soil	MNHLDNIASRQRKSLVRDALFATFVALATIVSVTTVTQVAAASSVAAHR
Ga0370545_013517_894_1043	3300034643	Soil	MSHLDNIAARQRKSLVRDALFATLVAFATLVSISTVTQAVHASSVVAHR
Ga0370545_036738_28_174	3300034643	Soil	MSHLDNIATRQRKSLVRDALFATLVALAAIVSISTVTQAVAASSVVAH
Ga0370545_062440_570_746	3300034643	Soil	MPAQQEVQIMSHLDNIATRQRKSLLRDALFVTALAFAAIVSATSVTKAVEASSVIAHR
Ga0370545_086909_25_174	3300034643	Soil	MSHLENIATRQRKSLVRDALFAALVALVAIVSVSTVTQAVEASCVVAHR
Ga0370545_128394_24_173	3300034643	Soil	MSHLDNIAARQRKSLVRDAIFAAFVAFAAIVSISTVGTAVHASSVVAHR
Ga0370548_065169_3_176	3300034644	Soil	MPQKRKSQMSRLDNIATRQRKSLVRDALFASFVALATIVSITTVTQVAAASSTIAHR
Ga0370548_134478_365_514	3300034644	Soil	MSHLENIAIRQRKSLVRDAVFAALVAVAAFVSISTVGQAVQASSIVAHR
Ga0314780_198118_352_501	3300034659	Soil	MSHLDNIAIRQRKSLVRDALFASFVALATIVSVTTVTQVAAASSTVAHR
Ga0370546_027986_24_173	3300034681	Soil	MSHLDNIATRQRKSLLRDALFVTALAFAAIVSATSVTKAVQASSVIAHR
Ga0370546_073306_27_176	3300034681	Soil	MSHLENIATRQRKSIVRDAFFAALVAIAAILSISTVSQAVQASSIVAHR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F038307

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences