Metagenome / Metatranscriptome Family F037096

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F037096
Family Type	Metagenome / Metatranscriptome
Number of Sequences	168
Average Sequence Length	35 residues
Representative Sequence	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGRIE
Number of Associated Samples	111
Number of Associated Scaffolds	168

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	87.50 %
% of genes near scaffold ends (potentially truncated)	7.14 %
% of genes from short scaffolds (< 2000 bps)	79.17 %
Associated GOLD sequencing projects	109
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.429 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment (18.452 % of family members)
Environment Ontology (ENVO)	Unclassified (26.190 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (29.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 46.03% β-sheet: 0.00% Coil/Unstructured: 53.97%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 168 Family Scaffolds
PF04002	RadC	17.86
PF05707	Zot	13.10
PF02486	Rep_trans	2.38
PF00589	Phage_integrase	2.38
PF01451	LMWPc	0.60
PF01202	SKI	0.60
PF02899	Phage_int_SAM_1	0.60
PF13560	HTH_31	0.60
PF00111	Fer2	0.60
PF06262	Zincin_1	0.60

COG ID	Name	Functional Category	% Frequency in 168 Family Scaffolds
COG2003	DNA repair protein RadC, contains a helix-hairpin-helix DNA-binding motif	Replication, recombination and repair [L]	17.86
COG4128	Zona occludens toxin, predicted ATPase	General function prediction only [R]	13.10
COG2946	DNA relaxase NicK	Replication, recombination and repair [L]	2.38
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	0.60
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	0.60
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	0.60

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	89.29 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	46.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	46.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	46.43 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	45.83 %
Unclassified	root	N/A	3.57 %

Name	Rank	Taxonomy	Distribution
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	35.12 %
Candidatus Nitrospira kreftii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	4.17 %
Unclassified	root	N/A	3.57 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.60 %

Name	Rank	Taxonomy	Distribution
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	35.12 %
Candidatus Nitrospira kreftii	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	4.17 %
Unclassified	root	N/A	3.57 %
Nitrospira sp.	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	0.60 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000891\|JGI10214J12806_10735118	All Organisms → cellular organisms → Bacteria → Nitrospirae	732	Open in IMG/M
3300001849\|RCM26_1010661	All Organisms → cellular organisms → Bacteria → Nitrospirae	1012	Open in IMG/M
3300005487\|Ga0074211_146342	All Organisms → cellular organisms → Bacteria → Nitrospirae	1012	Open in IMG/M
3300005491\|Ga0074212_143192	All Organisms → cellular organisms → Bacteria → Nitrospirae	811	Open in IMG/M
3300005552\|Ga0066701_10403432	All Organisms → cellular organisms → Bacteria → Nitrospirae	846	Open in IMG/M
3300005553\|Ga0066695_10365991	All Organisms → cellular organisms → Bacteria → Nitrospirae	901	Open in IMG/M
3300005764\|Ga0066903_107670902	Not Available	556	Open in IMG/M
3300005827\|Ga0074478_1231632	All Organisms → cellular organisms → Bacteria → Nitrospirae	533	Open in IMG/M
3300005828\|Ga0074475_10583373	All Organisms → cellular organisms → Bacteria → Nitrospirae	1151	Open in IMG/M
3300005829\|Ga0074479_10297587	All Organisms → cellular organisms → Bacteria → Nitrospirae	607	Open in IMG/M
3300005829\|Ga0074479_10703992	All Organisms → cellular organisms → Bacteria	1301	Open in IMG/M
3300005830\|Ga0074473_10021807	All Organisms → cellular organisms → Bacteria → Nitrospirae	643	Open in IMG/M
3300005830\|Ga0074473_10433032	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	583	Open in IMG/M
3300005833\|Ga0074472_10306731	All Organisms → cellular organisms → Bacteria → Nitrospirae	1276	Open in IMG/M
3300005833\|Ga0074472_10628756	All Organisms → cellular organisms → Bacteria → Nitrospirae	633	Open in IMG/M
3300005833\|Ga0074472_11436212	All Organisms → cellular organisms → Bacteria	1448	Open in IMG/M
3300005836\|Ga0074470_10078379	All Organisms → cellular organisms → Bacteria → Nitrospirae	2446	Open in IMG/M
3300005836\|Ga0074470_11230200	All Organisms → cellular organisms → Bacteria	3022	Open in IMG/M
3300006055\|Ga0097691_1193017	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	526	Open in IMG/M
3300006086\|Ga0075019_11014846	All Organisms → cellular organisms → Bacteria → Nitrospirae	536	Open in IMG/M
3300006102\|Ga0075015_100381615	All Organisms → cellular organisms → Bacteria → Nitrospirae	792	Open in IMG/M
3300006872\|Ga0101947_1001302	All Organisms → cellular organisms → Bacteria	23090	Open in IMG/M
3300006917\|Ga0075472_10446650	All Organisms → cellular organisms → Bacteria → Nitrospirae	641	Open in IMG/M
3300007521\|Ga0105044_10846300	All Organisms → cellular organisms → Bacteria → Nitrospirae	719	Open in IMG/M
3300009012\|Ga0066710_102779004	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	693	Open in IMG/M
3300009053\|Ga0105095_10873452	All Organisms → cellular organisms → Bacteria → Nitrospirae	503	Open in IMG/M
3300009075\|Ga0105090_10265651	All Organisms → cellular organisms → Bacteria → Nitrospirae	1054	Open in IMG/M
3300009075\|Ga0105090_10801582	Not Available	572	Open in IMG/M
3300009084\|Ga0105046_10043783	All Organisms → cellular organisms → Bacteria → Nitrospirae	6326	Open in IMG/M
3300009084\|Ga0105046_10045769	All Organisms → cellular organisms → Bacteria → Nitrospirae	6155	Open in IMG/M
3300009084\|Ga0105046_10744255	Not Available	860	Open in IMG/M
3300009087\|Ga0105107_11299900	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	508	Open in IMG/M
3300009091\|Ga0102851_10353508	All Organisms → cellular organisms → Bacteria → Nitrospirae	1460	Open in IMG/M
3300009091\|Ga0102851_11150075	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	852	Open in IMG/M
3300009091\|Ga0102851_13122042	All Organisms → cellular organisms → Bacteria → Nitrospirae	532	Open in IMG/M
3300009111\|Ga0115026_10127229	All Organisms → cellular organisms → Bacteria → Nitrospirae	1603	Open in IMG/M
3300009167\|Ga0113563_10534166	All Organisms → cellular organisms → Bacteria → Nitrospirae	1286	Open in IMG/M
3300009167\|Ga0113563_10669990	All Organisms → cellular organisms → Bacteria → Nitrospirae	1159	Open in IMG/M
3300009167\|Ga0113563_12909027	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	580	Open in IMG/M
3300009167\|Ga0113563_13423278	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	537	Open in IMG/M
3300009179\|Ga0115028_11001948	All Organisms → cellular organisms → Bacteria → Nitrospirae	671	Open in IMG/M
3300009179\|Ga0115028_11077854	All Organisms → cellular organisms → Bacteria → Nitrospirae	652	Open in IMG/M
3300009777\|Ga0105164_10185281	All Organisms → cellular organisms → Bacteria → Nitrospirae	1058	Open in IMG/M
3300009873\|Ga0131077_10010362	All Organisms → cellular organisms → Bacteria	29303	Open in IMG/M
3300009873\|Ga0131077_10050605	All Organisms → cellular organisms → Bacteria	5824	Open in IMG/M
3300009873\|Ga0131077_10403262	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	1303	Open in IMG/M
3300010047\|Ga0126382_11251873	All Organisms → cellular organisms → Bacteria → Nitrospirae	668	Open in IMG/M
3300010362\|Ga0126377_12347351	All Organisms → cellular organisms → Bacteria → Nitrospirae	609	Open in IMG/M
3300010391\|Ga0136847_10666010	All Organisms → cellular organisms → Bacteria → Nitrospirae	628	Open in IMG/M
3300010400\|Ga0134122_10702893	All Organisms → cellular organisms → Bacteria → Nitrospirae	950	Open in IMG/M
3300010401\|Ga0134121_12933395	All Organisms → cellular organisms → Bacteria → Nitrospirae	524	Open in IMG/M
3300010403\|Ga0134123_10913428	All Organisms → cellular organisms → Bacteria → Nitrospirae	885	Open in IMG/M
3300010403\|Ga0134123_13224079	All Organisms → cellular organisms → Bacteria → Nitrospirae	525	Open in IMG/M
3300010429\|Ga0116241_10204697	All Organisms → cellular organisms → Bacteria	1627	Open in IMG/M
3300012530\|Ga0136635_10256420	All Organisms → cellular organisms → Bacteria → Nitrospirae	613	Open in IMG/M
3300013772\|Ga0120158_10264057	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp.	853	Open in IMG/M
3300014269\|Ga0075302_1126493	All Organisms → cellular organisms → Bacteria → Nitrospirae	600	Open in IMG/M
3300014304\|Ga0075340_1098295	All Organisms → cellular organisms → Bacteria → Nitrospirae	585	Open in IMG/M
3300014308\|Ga0075354_1175839	All Organisms → cellular organisms → Bacteria → Nitrospirae	504	Open in IMG/M
3300014317\|Ga0075343_1116915	All Organisms → cellular organisms → Bacteria → Nitrospirae	625	Open in IMG/M
3300014319\|Ga0075348_1244652	Not Available	511	Open in IMG/M
3300014326\|Ga0157380_12049846	All Organisms → cellular organisms → Bacteria → Nitrospirae	634	Open in IMG/M
3300014326\|Ga0157380_12198352	All Organisms → cellular organisms → Bacteria → Nitrospirae	615	Open in IMG/M
3300014801\|Ga0119946_1032177	All Organisms → cellular organisms → Bacteria → Nitrospirae	542	Open in IMG/M
3300015360\|Ga0163144_10068480	All Organisms → cellular organisms → Bacteria → Nitrospirae	6013	Open in IMG/M
3300015360\|Ga0163144_10085863	All Organisms → cellular organisms → Bacteria → Nitrospirae	5134	Open in IMG/M
3300015360\|Ga0163144_10986743	All Organisms → cellular organisms → Bacteria → Nitrospirae	809	Open in IMG/M
3300017695\|Ga0180121_10030955	All Organisms → cellular organisms → Bacteria → Nitrospirae	1887	Open in IMG/M
3300017695\|Ga0180121_10230088	All Organisms → cellular organisms → Bacteria → Nitrospirae	693	Open in IMG/M
3300017939\|Ga0187775_10094433	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	994	Open in IMG/M
3300018031\|Ga0184634_10247013	All Organisms → cellular organisms → Bacteria → Nitrospirae	817	Open in IMG/M
3300018060\|Ga0187765_10489369	All Organisms → cellular organisms → Bacteria → Nitrospirae	776	Open in IMG/M
3300018074\|Ga0184640_10156458	All Organisms → cellular organisms → Bacteria → Nitrospirae	1018	Open in IMG/M
3300018079\|Ga0184627_10459906	All Organisms → cellular organisms → Bacteria → Nitrospirae	661	Open in IMG/M
3300018084\|Ga0184629_10271216	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	890	Open in IMG/M
3300018465\|Ga0190269_11555308	Not Available	548	Open in IMG/M
3300019377\|Ga0190264_10110728	All Organisms → cellular organisms → Bacteria → Nitrospirae	1316	Open in IMG/M
3300019458\|Ga0187892_10003669	All Organisms → cellular organisms → Bacteria	27524	Open in IMG/M
3300019458\|Ga0187892_10019096	All Organisms → cellular organisms → Bacteria → Nitrospirae	6796	Open in IMG/M
3300019458\|Ga0187892_10023774	All Organisms → cellular organisms → Bacteria → Nitrospirae	5544	Open in IMG/M
3300019487\|Ga0187893_10007951	All Organisms → cellular organisms → Bacteria → Nitrospirae	17017	Open in IMG/M
3300019487\|Ga0187893_10047301	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	4432	Open in IMG/M
3300019487\|Ga0187893_10069497	All Organisms → cellular organisms → Bacteria → Nitrospirae	3350	Open in IMG/M
3300019487\|Ga0187893_10077453	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	3090	Open in IMG/M
3300019487\|Ga0187893_10422194	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	895	Open in IMG/M
3300020057\|Ga0163151_10015577	All Organisms → cellular organisms → Bacteria → Nitrospirae	7093	Open in IMG/M
3300020167\|Ga0194035_1001613	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	11706	Open in IMG/M
3300020186\|Ga0163153_10011739	All Organisms → cellular organisms → Bacteria → Nitrospirae	8326	Open in IMG/M
3300020195\|Ga0163150_10336774	All Organisms → cellular organisms → Bacteria → Nitrospirae	721	Open in IMG/M
3300021082\|Ga0210380_10601405	All Organisms → cellular organisms → Bacteria → Nitrospirae	504	Open in IMG/M
3300021088\|Ga0210404_10209424	All Organisms → cellular organisms → Bacteria	1048	Open in IMG/M
3300021088\|Ga0210404_10623155	All Organisms → cellular organisms → Bacteria → Nitrospirae	614	Open in IMG/M
3300021332\|Ga0210339_1341776	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	531	Open in IMG/M
3300021859\|Ga0210334_10772252	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300021861\|Ga0213853_10630481	All Organisms → cellular organisms → Bacteria → Nitrospirae	569	Open in IMG/M
3300022204\|Ga0224496_10019279	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	3342	Open in IMG/M
3300022204\|Ga0224496_10027731	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	2696	Open in IMG/M
3300022213\|Ga0224500_10031497	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	2198	Open in IMG/M
3300022213\|Ga0224500_10228658	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	681	Open in IMG/M
3300022214\|Ga0224505_10031997	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	2270	Open in IMG/M
3300022223\|Ga0224501_10179492	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Candidatus Nitrospira kreftii	1181	Open in IMG/M
3300024304\|Ga0233391_1007247	All Organisms → cellular organisms → Bacteria → Nitrospirae	557	Open in IMG/M
3300025535\|Ga0207423_1021722	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1057	Open in IMG/M
3300025569\|Ga0210073_1013041	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1609	Open in IMG/M
3300025910\|Ga0207684_10529711	All Organisms → cellular organisms → Bacteria	1009	Open in IMG/M
3300025912\|Ga0207707_10101846	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	2510	Open in IMG/M
3300025917\|Ga0207660_10613948	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	886	Open in IMG/M
3300025921\|Ga0207652_10762373	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	861	Open in IMG/M
3300025946\|Ga0210126_101125	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	2088	Open in IMG/M
3300027716\|Ga0209682_10010906	All Organisms → cellular organisms → Bacteria → Nitrospirae	2257	Open in IMG/M
3300027897\|Ga0209254_11013535	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	539	Open in IMG/M
3300027900\|Ga0209253_10523850	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	881	Open in IMG/M
3300027902\|Ga0209048_10034684	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	4240	Open in IMG/M
3300027902\|Ga0209048_10207210	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1422	Open in IMG/M
3300027902\|Ga0209048_10211298	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1404	Open in IMG/M
3300027902\|Ga0209048_10581495	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	748	Open in IMG/M
3300027902\|Ga0209048_10915123	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	565	Open in IMG/M
3300028380\|Ga0268265_10645242	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1017	Open in IMG/M
3300031455\|Ga0307505_10014773	All Organisms → cellular organisms → Bacteria → Nitrospirae	3757	Open in IMG/M
3300031576\|Ga0247727_10482344	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	970	Open in IMG/M
3300031576\|Ga0247727_10932638	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	606	Open in IMG/M
3300031576\|Ga0247727_11226592	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	501	Open in IMG/M
3300031740\|Ga0307468_100613523	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	891	Open in IMG/M
3300031740\|Ga0307468_100707692	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	843	Open in IMG/M
3300031820\|Ga0307473_10218077	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1146	Open in IMG/M
3300031834\|Ga0315290_10022970	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	4856	Open in IMG/M
3300031834\|Ga0315290_10042173	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	3676	Open in IMG/M
3300031834\|Ga0315290_10063900	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	3024	Open in IMG/M
3300031834\|Ga0315290_10419844	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1171	Open in IMG/M
3300031834\|Ga0315290_10428670	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1158	Open in IMG/M
3300031834\|Ga0315290_10454351	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1120	Open in IMG/M
3300031834\|Ga0315290_10474098	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1094	Open in IMG/M
3300031834\|Ga0315290_11177671	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	637	Open in IMG/M
3300031834\|Ga0315290_11195595	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	631	Open in IMG/M
3300031852\|Ga0307410_11266796	Not Available	644	Open in IMG/M
3300031854\|Ga0310904_10621017	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	740	Open in IMG/M
3300031862\|Ga0315280_10315368	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	772	Open in IMG/M
3300031873\|Ga0315297_10043857	All Organisms → cellular organisms → Bacteria → Nitrospirae	3356	Open in IMG/M
3300031873\|Ga0315297_10117327	All Organisms → cellular organisms → Bacteria → Nitrospirae	2129	Open in IMG/M
3300031873\|Ga0315297_10343408	All Organisms → cellular organisms → Bacteria	1249	Open in IMG/M
3300031903\|Ga0307407_11695268	All Organisms → cellular organisms → Bacteria → Nitrospirae	503	Open in IMG/M
3300031952\|Ga0315294_10722158	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	871	Open in IMG/M
3300031997\|Ga0315278_10912563	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	880	Open in IMG/M
3300031997\|Ga0315278_11074697	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	797	Open in IMG/M
3300031997\|Ga0315278_11169337	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	756	Open in IMG/M
3300031997\|Ga0315278_11194852	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	746	Open in IMG/M
3300031997\|Ga0315278_11425264	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	669	Open in IMG/M
3300032018\|Ga0315272_10254827	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	845	Open in IMG/M
3300032143\|Ga0315292_10763168	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	811	Open in IMG/M
3300032143\|Ga0315292_11196558	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	625	Open in IMG/M
3300032164\|Ga0315283_10990705	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	890	Open in IMG/M
3300032164\|Ga0315283_11190514	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	796	Open in IMG/M
3300032164\|Ga0315283_11853733	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	605	Open in IMG/M
3300032174\|Ga0307470_11829675	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	515	Open in IMG/M
3300032177\|Ga0315276_11780944	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	634	Open in IMG/M
3300032180\|Ga0307471_100765718	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1132	Open in IMG/M
3300032205\|Ga0307472_102284554	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	547	Open in IMG/M
3300032256\|Ga0315271_11107730	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	684	Open in IMG/M
3300032275\|Ga0315270_11022914	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	548	Open in IMG/M
3300032397\|Ga0315287_11283908	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	838	Open in IMG/M
3300032401\|Ga0315275_11422028	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	747	Open in IMG/M
3300032401\|Ga0315275_12272018	All Organisms → cellular organisms → Bacteria → Nitrospirae	566	Open in IMG/M
3300032456\|Ga0335394_10021461	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	7228	Open in IMG/M
3300032456\|Ga0335394_10101735	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	2981	Open in IMG/M
3300033433\|Ga0326726_10201326	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1838	Open in IMG/M
3300034090\|Ga0326723_0362071	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	656	Open in IMG/M
3300034257\|Ga0370495_0116959	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	834	Open in IMG/M
3300034257\|Ga0370495_0220173	All Organisms → cellular organisms → Bacteria → Nitrospirae	615	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.05%
Host-Associated	Host-Associated	2.98%
Engineered	Engineered	2.98%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	63.10%
Terrestrial	Environmental → Terrestrial	30.95%
Plants	Host-Associated → Plants	2.98%
Wastewater	Engineered → Wastewater	2.38%
Built Environment	Engineered → Built Environment	0.60%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	45.83%
Soil	Environmental → Terrestrial → Soil	22.62%
Sediment	Environmental → Aquatic → Sediment	10.12%
Marine	Environmental → Aquatic → Marine	7.14%
Cave	Environmental → Terrestrial → Cave	6.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.38%
Activated Sludge	Engineered → Wastewater → Activated Sludge	1.79%
Peat	Environmental → Terrestrial → Peat	1.19%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	0.60%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.60%
Anaerobic Digestor	Engineered → Wastewater → Anaerobic Digestor	0.60%
Unclassified	Engineered → Built Environment → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Lake	Environmental → Aquatic → Freshwater → Lake	23.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	14.29%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	10.12%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	6.55%
Sediment	Environmental → Aquatic → Freshwater → Sediment	5.36%
Lentic	Environmental → Aquatic → Freshwater → Lentic	5.36%
Ice	Environmental → Aquatic → Freshwater → Ice	5.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.36%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	4.76%
Sediment	Environmental → Aquatic → Marine → Sediment	3.57%
Loam	Environmental → Terrestrial → Soil → Loam	2.98%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.38%
Wetlands	Environmental → Aquatic → Marine → Wetlands	1.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified	1.79%
Drinking Water	Environmental → Aquatic → Freshwater → Drinking Water	1.19%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	1.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.19%
Lotic	Environmental → Aquatic → Freshwater → Lotic	0.60%
Coastal	Environmental → Aquatic → Marine → Coastal	0.60%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	0.60%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified	0.60%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	19.05%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	10.12%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	6.55%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	5.36%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	5.36%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.36%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.36%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	4.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.76%
Unclassified	Environmental → Aquatic → Freshwater → Lake → Unclassified	4.17%
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	3.57%
Unclassified	Environmental → Aquatic → Marine → Sediment → Unclassified	3.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.38%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.38%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	1.79%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	1.79%
Unclassified	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified	1.79%
Estuary	Environmental → Aquatic → Marine → Intertidal Zone → Estuary	1.19%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.19%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.19%
Unclassified	Environmental → Aquatic → Freshwater → Lotic → Unclassified	0.60%
Unclassified	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified	0.60%
Unchlorinated	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated	0.60%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	0.60%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.60%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	0.60%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.60%
Unclassified	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified	0.60%
Unclassified	Engineered → Built Environment → Unclassified → Unclassified → Unclassified	0.60%

Habitat	Taxonomy	Distribution
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	18.45%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	6.55%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	4.17%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	4.17%
Freshwater Microbial Mat	Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Microbial Mat	3.57%
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	3.57%
Sediment	Environmental → Aquatic → Marine → Sediment → Unclassified → Sediment	3.57%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.57%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	2.98%
Microbial Mat On Rocks	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks	2.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	2.38%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.38%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.38%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	1.79%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	1.79%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.79%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.79%
Bio-Ooze	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze	1.79%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	1.79%
Wastewater	Engineered → Wastewater → Activated Sludge → Unclassified → Unclassified → Wastewater	1.79%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Sediment	1.19%
Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine	1.19%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.19%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.19%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.19%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	1.19%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.19%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.19%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.19%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.19%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.60%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	0.60%
Anoxic Zone Freshwater	Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater	0.60%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Sediment	0.60%
Wetland Sediment	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment	0.60%
Marine Plankton	Environmental → Aquatic → Freshwater → Lotic → Unclassified → Marine Plankton	0.60%
Aquatic	Environmental → Aquatic → Freshwater → Drinking Water → Unclassified → Aquatic	0.60%
Wastewater	Environmental → Aquatic → Freshwater → Drinking Water → Unchlorinated → Wastewater	0.60%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	0.60%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.60%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.60%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.60%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.60%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.60%
Deep Subsurface Sediment	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface Sediment	0.60%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.60%
Anaerobic Digestor Sludge	Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Anaerobic Digestor Sludge	0.60%
Drinking Water Pipes	Engineered → Built Environment → Unclassified → Unclassified → Unclassified → Drinking Water Pipes	0.60%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300001849	Marine plankton microbial communities from the Amazon River plume, Atlantic Ocean - RCM26, ROCA_DNA190_2.0um_MCP-N_C_2b	Environmental	Open in IMG/M
3300005487	Sediment microbial communities from Lake Washington, Seattle, Washington, USA - Methanol enrichment	Environmental	Open in IMG/M
3300005491	Sediment ecosystem from Lake Washington, Seattle, Washington, USA - Formaldehyde enrichment	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005827	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.188_CBA	Environmental	Open in IMG/M
3300005828	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.182_BBI	Environmental	Open in IMG/M
3300005829	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBC	Environmental	Open in IMG/M
3300005830	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.178_YBM	Environmental	Open in IMG/M
3300005833	Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.174_CBK	Environmental	Open in IMG/M
3300005836	Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBB	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006872	Biofilm microbial communities from drinking water pipes in Singapore	Engineered	Open in IMG/M
3300006917	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_0.19_N_<0.8_DNA	Environmental	Open in IMG/M
3300007521	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-01	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009053	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009075	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009084	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (megahit assembly)	Environmental	Open in IMG/M
3300009087	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300009777	Wastewater microbial communities from Netherlands to study Microbial Dark Matter (Phase II) - VDW unchlorinated drinking water	Environmental	Open in IMG/M
3300009873	Activated sludge microbial diversity in wastewater treatment plant from Taiwan - Wenshan plant	Engineered	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010391	Freshwater sediment microbial communities from Lake Superior, USA - Station SU-17. Combined Assembly of Gp0155404, Gp0155335, Gp0155336, Gp0155336, Gp0155403, Gp0155406	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300010429	AD_USRAca	Engineered	Open in IMG/M
3300012530	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ85 (21.06)	Environmental	Open in IMG/M
3300013772	Permafrost microbial communities from Nunavut, Canada - A10_80_0.25M	Environmental	Open in IMG/M
3300014269	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleB_D1	Environmental	Open in IMG/M
3300014304	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D1	Environmental	Open in IMG/M
3300014308	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1	Environmental	Open in IMG/M
3300014317	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqB_D1	Environmental	Open in IMG/M
3300014319	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleA_D1	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014801	Aquatic microbial communities from drinking water treatment system in Nanjing, China - Filtered water - FW	Environmental	Open in IMG/M
3300015360	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.BULKMAT1	Environmental	Open in IMG/M
3300017695	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ540 (21.06) (version 2)	Environmental	Open in IMG/M
3300017939	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MG	Environmental	Open in IMG/M
3300018031	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018079	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1	Environmental	Open in IMG/M
3300018084	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019458	Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaG	Environmental	Open in IMG/M
3300019487	White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaG	Environmental	Open in IMG/M
3300020057	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP5.IB-2	Environmental	Open in IMG/M
3300020167	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L239-20m	Environmental	Open in IMG/M
3300020186	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.MP6.IB-1	Environmental	Open in IMG/M
3300020195	Freshwater microbial mat bacterial communities from Lake Vanda, McMurdo Dry Valleys, Antarctica - Oligotrophic Lake LV.19.P2.IB	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021332	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.384 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021859	Metatranscriptome of estuarine sediment microbial communities from the Columbia River estuary, Oregon, United States ? S.306 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022204	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_8_1	Environmental	Open in IMG/M
3300022213	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_4_1	Environmental	Open in IMG/M
3300022214	Sediment microbial communities from San Francisco Bay, California, United States - SF_Jan12_sed_USGS_4_1	Environmental	Open in IMG/M
3300022223	Sediment microbial communities from San Francisco Bay, California, United States - SF_Oct11_sed_USGS_8_1	Environmental	Open in IMG/M
3300024304	Subsurface microbial communities from Mancos shale, Colorado, United States - Mancos A_10_July_PB	Environmental	Open in IMG/M
3300025535	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D1 (SPAdes)	Environmental	Open in IMG/M
3300025569	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025917	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025946	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqC_D2 (SPAdes)	Environmental	Open in IMG/M
3300027716	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare2Fresh (SPAdes)	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300027900	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - BRP12 BR (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031455	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_S	Environmental	Open in IMG/M
3300031576	Biofilm microbial communities from Wishing Well Cave, Virginia, United States - WW16-25	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031834	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G12_0	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031862	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031952	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_40	Environmental	Open in IMG/M
3300031997	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_0	Environmental	Open in IMG/M
3300032018	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_middle	Environmental	Open in IMG/M
3300032143	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G13_0	Environmental	Open in IMG/M
3300032164	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G09_0	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032256	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C3_top	Environmental	Open in IMG/M
3300032275	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - C1_bottom	Environmental	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300032456	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - MAT-03 (spades assembly)	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034257	Peat soil microbial communities from wetlands in Alaska, United States - Frozen_pond_02D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI10214J12806_107351182	3300000891	Soil	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRTE*
RCM26_10106611	3300001849	Marine Plankton	MDQAALDTVVYFAGAFFLGGFTVGLIVKFLMGRL*
Ga0074211_1463424	3300005487	Sediment	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRIE*
Ga0074212_1431923	3300005491	Sediment	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTE*
Ga0066701_104034322	3300005552	Soil	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRIE*
Ga0066695_103659912	3300005553	Soil	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRIE*
Ga0066903_1076709022	3300005764	Tropical Forest Soil	MDQAAIDMIVRYCGYFFLGGFTVGLIVKLLLGKID*
Ga0074478_12316321	3300005827	Sediment (Intertidal)	AGGRMDQAAVDALVYWAGACFLGGFTVGVIVKLLLGRVE*
Ga0074475_105833733	3300005828	Sediment (Intertidal)	MDQAAIDAAVFWAAAYYLGGFTVGIIVRLMLRPDL*
Ga0074479_102975872	3300005829	Sediment (Intertidal)	MDQAAMDALVYWAGACFLGGFAVGVIVKLLLGRVE*
Ga0074479_107039921	3300005829	Sediment (Intertidal)	MDQAALDMLVRYMGYFFLGGFTVGLIVRMLLGKSE*
Ga0074473_100218072	3300005830	Sediment (Intertidal)	MDQAAIDAAVFWAAAYYLGGFTVGIIVRLMLGPYL*
Ga0074473_104330322	3300005830	Sediment (Intertidal)	MDQAAIDALIYWMGAFFLGGFTVGVIVKFLLGNY*
Ga0074472_103067314	3300005833	Sediment (Intertidal)	MDQAAIDVLVYWAGACFLGGFTVGVIVKLLLGRSE*
Ga0074472_106287563	3300005833	Sediment (Intertidal)	MDQAALDTVVYFAGAFFLGGFTVGLIVKFLIGER*
Ga0074472_114362124	3300005833	Sediment (Intertidal)	MDQAAIDALVYWAGACFLGGFTVGVIVKLLLGRTE*
Ga0074470_100783795	3300005836	Sediment (Intertidal)	MTMDQAAIDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0074470_112302002	3300005836	Sediment (Intertidal)	MDQAALDAIVYWAGACFLGGFTVGVIVKLLLGSMK*
Ga0097691_11930172	3300006055	Arctic Peat Soil	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLVGRAE*
Ga0075019_110148463	3300006086	Watersheds	MDQAAIDTLVYWAGAFFLGGFAVGVIVKLLLGSME*
Ga0075015_1003816153	3300006102	Watersheds	MDQAAIDVLVYWAGAFFLGGFAVGVIVKLLLGSME*
Ga0101947_10013028	3300006872	Drinking Water Pipes	MDQAAFDTVVYFAGAFFLGGFTVGLIVKFLLGQL*
Ga0075472_104466502	3300006917	Aqueous	MDQAALDTVVYFAGAFFLGGFTVGLIVKFLMGQL*
Ga0105044_108463001	3300007521	Freshwater	MTMDQAAIDALVYWAGACFLGGFTVGVIVKLLLGSLK*
Ga0066710_1027790042	3300009012	Grasslands Soil	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGSIE
Ga0105095_108734522	3300009053	Freshwater Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRAE*
Ga0105090_102656514	3300009075	Freshwater Sediment	MDQAALDTVVYFAGAFFLGGFTVGLIVKFLLGQL*
Ga0105090_108015822	3300009075	Freshwater Sediment	MDQAAFDTIVYFAGAFFLGGFTVGLIVKFLLGQL*
Ga0105046_1004378311	3300009084	Freshwater	MDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTH*
Ga0105046_100457695	3300009084	Freshwater	MDQAAIDALVYWAGACFLGGFTVGVIVKLLLGTTN*
Ga0105046_107442552	3300009084	Freshwater	MDQAALDTVVYFAGAFFLGGFIVGLIVKFLIGRL*
Ga0105107_112999002	3300009087	Freshwater Sediment	MDQAAIDAAVFWAAAMYLGGFTVGIIVRLMLHPYL*
Ga0102851_103535082	3300009091	Freshwater Wetlands	MTMDQAAFDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0102851_111500754	3300009091	Freshwater Wetlands	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGSME*
Ga0102851_131220422	3300009091	Freshwater Wetlands	MDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN*
Ga0115026_101272294	3300009111	Wetland	MTMDQAAVDAIVYWAGACFLGGFAVGVIVKLLLGRVE*
Ga0113563_105341662	3300009167	Freshwater Wetlands	MTMDQAAVDAIVYWAGACFLGGFAVGVIVKLLLGRME*
Ga0113563_106699902	3300009167	Freshwater Wetlands	MTMDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN*
Ga0113563_129090272	3300009167	Freshwater Wetlands	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGTTD*
Ga0113563_134232782	3300009167	Freshwater Wetlands	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGRVE*
Ga0115028_110019484	3300009179	Wetland	MDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTT*
Ga0115028_110778541	3300009179	Wetland	MTMDQAAVDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0105164_101852813	3300009777	Wastewater	MMDQAAIDALVYFSGRFFLIGFAVGVIVKLFMGNSERG*
Ga0131077_1001036210	3300009873	Wastewater	MDQAAIDAAVFWAAALYLGGFTVGIIVRVMLGPYL*
Ga0131077_1005060511	3300009873	Wastewater	MDQAAIDAAVFWAAALYLGGFTVGIIIRLMLGPYV*
Ga0131077_104032623	3300009873	Wastewater	MDQAAIDAAVFWAAALYLGGFTVGIIVRLMLGPYL*
Ga0126382_112518733	3300010047	Tropical Forest Soil	MDQAAIDMVVRYCGYFFLGGFTVGLIVKLLLGKID*
Ga0126377_123473511	3300010362	Tropical Forest Soil	TMDQAAIDMIVRYCGYFFLGGFTVGLIVKLLLGKID*
Ga0136847_106660102	3300010391	Freshwater Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRVE*
Ga0134122_107028931	3300010400	Terrestrial Soil	MDQAAIDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0134121_129333951	3300010401	Terrestrial Soil	MDQTAIDAMVYWAGAYFLGGFAVGVIVKLLLGSMK*
Ga0134123_109134282	3300010403	Terrestrial Soil	MMDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRME*
Ga0134123_132240791	3300010403	Terrestrial Soil	MDQAAIDAIVYWAGAYFLGGFAVGVIVKLLLGSMK*
Ga0116241_102046974	3300010429	Anaerobic Digestor Sludge	MDQAAFDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0136635_102564202	3300012530	Polar Desert Sand	MDQAALDAIVYWAGAFFLGGFTVGIIVKLLLGTTN*
Ga0120158_102640574	3300013772	Permafrost	MDQAALDQLVYWCGRFFLIGFAAGVVVKLLMGKTQ*
Ga0075302_11264932	3300014269	Natural And Restored Wetlands	MTMDQAALDAIVYWAGACFLGGFAVGVIVKLLLGRTE*
Ga0075340_10982953	3300014304	Natural And Restored Wetlands	MDQAAIDALVYWSGAFFLGGFTVGVIVKLLLGNIQ*
Ga0075354_11758393	3300014308	Natural And Restored Wetlands	MTMDQAAIDAIVYWAGACFLGGFAVGVIVKLLLGSMK*
Ga0075343_11169152	3300014317	Natural And Restored Wetlands	MTMDQAALDAIVYWAGACFLGGFTVGVIVKLLLGRTE*
Ga0075348_12446522	3300014319	Natural And Restored Wetlands	MTMDQAAFDAIVYWAGACFLGGFAVGVIVKLLLGRME*
Ga0157380_120498463	3300014326	Switchgrass Rhizosphere	MMDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRIE*
Ga0157380_121983522	3300014326	Switchgrass Rhizosphere	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRAECGGG*
Ga0119946_10321772	3300014801	Aquatic	MDQAALDTVVYLAGAFFLGGFTVGLIVKFLLGQR*
Ga0163144_1006848010	3300015360	Freshwater Microbial Mat	MTMDQAAIDAIVYWAGACFLGGFTVGVIVKLLLGSMK*
Ga0163144_100858637	3300015360	Freshwater Microbial Mat	MMDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN*
Ga0163144_109867433	3300015360	Freshwater Microbial Mat	MSMDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN*
Ga0180121_100309552	3300017695	Polar Desert Sand	MDQAALDAIVYWAGAFFLGGFTVGIIVKLLLGTTN
Ga0180121_102300883	3300017695	Polar Desert Sand	MMDQAAIDAIVYWAGAFFLGGFTVGVIVKLLLGTTH
Ga0187775_100944332	3300017939	Tropical Peatland	MTQAVIDAMVYWSAACFLGGFTVGLIVKLILGDTK
Ga0184634_102470131	3300018031	Groundwater Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRIE
Ga0187765_104893691	3300018060	Tropical Peatland	MMTQAVIDAMVYWSAACFLGGFTVGLIVKLILGDTK
Ga0184640_101564584	3300018074	Groundwater Sediment	MMDQAGVDALVYWAGAFFLGGFAVGVIVKLLLGRVE
Ga0184627_104599061	3300018079	Groundwater Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRID
Ga0184629_102712163	3300018084	Groundwater Sediment	MDQAAIDALVYWAGAFFLGGFAIGVIVKLLLGRTE
Ga0190269_115553082	3300018465	Soil	MDQAALDMLVRYMGYFFLGGFTVGLIVRMLLGKSE
Ga0190264_101107284	3300019377	Soil	MTMDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN
Ga0187892_1000366925	3300019458	Bio-Ooze	MMDQASIDAMVFWSASYFLGGFTVGVIVKLLLGNIK
Ga0187892_1001909610	3300019458	Bio-Ooze	MDQAAIDTAVFWAAACYLGGFTVGIIVRLMLHPDL
Ga0187892_100237744	3300019458	Bio-Ooze	MMDQATIDAMVFWSASYFLGGFTVGVIVKLLLGSTN
Ga0187893_1000795124	3300019487	Microbial Mat On Rocks	MMDQATIDAMVFWSASYFLGGFTVGVIVKLLLGNIK
Ga0187893_100473016	3300019487	Microbial Mat On Rocks	MMDQATIDAMVFWSAAYFLGGFTVGVIVKLLLGNSK
Ga0187893_100694972	3300019487	Microbial Mat On Rocks	MDQAAVDALVFWAGAFFLGGFTVGVIVKLLLGRIG
Ga0187893_100774532	3300019487	Microbial Mat On Rocks	MMDQASIDAMVFWSAAYFLGGFTVGVIVKLLLGNSK
Ga0187893_104221942	3300019487	Microbial Mat On Rocks	MDQAAIDAAVFWAGASYLGGFTVGIIVRLMLHPDL
Ga0163151_100155778	3300020057	Freshwater Microbial Mat	MDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN
Ga0194035_10016132	3300020167	Anoxic Zone Freshwater	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRIS
Ga0163153_1001173910	3300020186	Freshwater Microbial Mat	MDQAAIDAIVYWAGACFLGGFTVGVIVKLLLGSMK
Ga0163150_103367741	3300020195	Freshwater Microbial Mat	MMDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTN
Ga0210380_106014051	3300021082	Groundwater Sediment	MDQAAVDALVYWAGACFLGGFTVGVIVKLLLGRVE
Ga0210404_102094244	3300021088	Soil	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRME
Ga0210404_106231552	3300021088	Soil	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGSMD
Ga0210339_13417762	3300021332	Estuarine	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGSTE
Ga0210334_107722522	3300021859	Estuarine	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGSME
Ga0213853_106304812	3300021861	Watersheds	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGSME
Ga0224496_100192792	3300022204	Sediment	MDQAAIDAAVFWAAALYLGGFTVGIIVRLMLGPYL
Ga0224496_100277314	3300022204	Sediment	MDQAAIDAAVFWAAAYYLGGFTVGIIVRLMLHPYL
Ga0224500_100314971	3300022213	Sediment	MDQAAIDAAVFWAAAMYLGGFTVGIIVRVMLGPYL
Ga0224500_102286582	3300022213	Sediment	MDQAAVDALVYWSGAFFLGGFTVGVIVKLLLGNVQ
Ga0224505_100319972	3300022214	Sediment	MDQAAIDTAVFWAAALYLGGFTVGIIVRLMLGPYL
Ga0224501_101794922	3300022223	Sediment	MDQAAIDAAVFWAAAMYLGGFTVGIIVRLMLGPYL
Ga0233391_10072471	3300024304	Deep Subsurface Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRIS
Ga0207423_10217224	3300025535	Natural And Restored Wetlands	MTMDQAALDAIVYWAGACFLGGFAVGVIVKLLLGRTE
Ga0210073_10130412	3300025569	Natural And Restored Wetlands	MDQAALDAIVYWAGACFLGGFAVGVIVKLLLGRTE
Ga0207684_105297112	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MDQAAIDAVVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0207707_101018464	3300025912	Corn Rhizosphere	MDQAAVDVLVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0207660_106139483	3300025917	Corn Rhizosphere	MDQASVDVLVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0207652_107623732	3300025921	Corn Rhizosphere	MDQAAMDALVYWAGACFLGGFAVGVIVKLLLGSTE
Ga0210126_1011256	3300025946	Natural And Restored Wetlands	MDRAAVDALVYWADAYFLGGFTVGVIVKLLLGRTE
Ga0209682_100109063	3300027716	Wetland Sediment	MDQTALDMLVRYMGYFFLGGFTVGLIVRMLLGKSE
Ga0209254_110135351	3300027897	Freshwater Lake Sediment	MDQAAIDALVYWSGAFFLGGFAVGVIVKLLLGSTE
Ga0209253_105238502	3300027900	Freshwater Lake Sediment	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSME
Ga0209048_100346849	3300027902	Freshwater Lake Sediment	MDQAAVDALVYWAGACFLGGFTVGVIVKLLLGRIE
Ga0209048_102072102	3300027902	Freshwater Lake Sediment	MMDQAAVDALVYWAGAYFLGGFTVGVIVKLLLGRME
Ga0209048_102112982	3300027902	Freshwater Lake Sediment	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRAE
Ga0209048_105814952	3300027902	Freshwater Lake Sediment	MMDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGKIE
Ga0209048_109151231	3300027902	Freshwater Lake Sediment	MMDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGRIE
Ga0268265_106452422	3300028380	Switchgrass Rhizosphere	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRAE
Ga0307505_100147733	3300031455	Soil	MDQAAIDALVYWAAACFLGGFAVGVIVKLLLGSMK
Ga0247727_104823442	3300031576	Biofilm	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGRID
Ga0247727_109326383	3300031576	Biofilm	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRMD
Ga0247727_112265921	3300031576	Biofilm	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRIE
Ga0307468_1006135232	3300031740	Hardwood Forest Soil	MDQTAIDAIVYWAGAYFLGGFAVGVIVKLLLGSMK
Ga0307468_1007076923	3300031740	Hardwood Forest Soil	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGRLE
Ga0307473_102180771	3300031820	Hardwood Forest Soil	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGRIE
Ga0315290_100229704	3300031834	Sediment	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRTE
Ga0315290_100421737	3300031834	Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRTD
Ga0315290_100639005	3300031834	Sediment	MDQAAMDALVYWAGACFLGGFTVGVIVKLLLGRME
Ga0315290_104198441	3300031834	Sediment	LEGCVMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRAE
Ga0315290_104286702	3300031834	Sediment	MMDQAAVDALVYWAGALFLGGFAVGVIVKLLLGRIE
Ga0315290_104543512	3300031834	Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRVE
Ga0315290_104740984	3300031834	Sediment	MDQAALDALVYWAGAFFLGGFAVGVIVKLLLGRIS
Ga0315290_111776712	3300031834	Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRME
Ga0315290_111955951	3300031834	Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRME
Ga0307410_112667962	3300031852	Rhizosphere	VNLIMMDQAAIDMLVYYSAAFFLMGYAVGVVLKVLTG
Ga0310904_106210174	3300031854	Soil	SKGLRMDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSMK
Ga0315280_103153683	3300031862	Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRAE
Ga0315297_100438577	3300031873	Sediment	MDQAAVDALVYWAGACFLGGFTVGVIVKLLLGRME
Ga0315297_101173273	3300031873	Sediment	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGRAE
Ga0315297_103434081	3300031873	Sediment	AVKGMMDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0307407_116952681	3300031903	Rhizosphere	MMDQAAIDMLVYYSAAFFLMGYAVGVVLKVLTGERG
Ga0315294_107221584	3300031952	Sediment	EGRMDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0315278_109125632	3300031997	Sediment	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTK
Ga0315278_110746972	3300031997	Sediment	MDQAAVDALVYWAGACFLGGFAVGVIVKLLLGRIE
Ga0315278_111693372	3300031997	Sediment	MMDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGRAE
Ga0315278_111948521	3300031997	Sediment	MMDQAAVDTLVYWAGAFFLGGFAVGVIVKLLLGRAE
Ga0315278_114252642	3300031997	Sediment	MDQAAVDTLVYWAGAFFLGGFAVGVIVKLLLGRTE
Ga0315272_102548272	3300032018	Sediment	MMDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTK
Ga0315292_107631681	3300032143	Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRTD
Ga0315292_111965582	3300032143	Sediment	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0315283_109907052	3300032164	Sediment	MDQAAVDALVYWAGAFFLGGFVVGVIVKLLLGNME
Ga0315283_111905143	3300032164	Sediment	MMDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRTE
Ga0315283_118537332	3300032164	Sediment	MDQAAMDALVYWAGAFFLGGFTVGVIVKLLLGRVE
Ga0307470_118296752	3300032174	Hardwood Forest Soil	MDQAAVDALVYWVGAFFLGGFAVGVIVKLLLGSMK
Ga0315276_117809441	3300032177	Sediment	CVMDQAAMDALVYWAGACFLGGFAVGVIVKLLLGRVE
Ga0307471_1007657182	3300032180	Hardwood Forest Soil	MDQAAVDALVYWAGAFFLGGFTVGVIVKLLLGRMS
Ga0307472_1022845541	3300032205	Hardwood Forest Soil	MDQTAIDAMVYWAGAYFLGGFAVGVIVKLLLGSMK
Ga0315271_111077301	3300032256	Sediment	MDQAAVDALVYWAGACFLGGFTVGVIVKLLLGRTE
Ga0315270_110229141	3300032275	Sediment	MTMDQSAIDALVYWAGAFFLGGFTVGVIVKLLLGTT
Ga0315287_112839082	3300032397	Sediment	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGRVE
Ga0315275_114220282	3300032401	Sediment	MDQVAVDALVYWAGAFFLGGFAVGVIVKLLLGRIE
Ga0315275_122720182	3300032401	Sediment	MDQAAVDALVYWSGACFLGGFTVGVIVKLLLGRVE
Ga0335394_100214619	3300032456	Freshwater	MDQAAIDALVYWAGACFLGGFTVGVIVKLLLGTTN
Ga0335394_101017354	3300032456	Freshwater	MDQAAIDALVYWAGAFFLGGFTVGVIVKLLLGTTH
Ga0326726_102013265	3300033433	Peat Soil	MDQAAVDALVYWAGAFFLGGFAVGVIVKLLLGSTE
Ga0326723_0362071_419_526	3300034090	Peat Soil	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSTH
Ga0370495_0116959_256_363	3300034257	Untreated Peat Soil	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGTTE
Ga0370495_0220173_503_610	3300034257	Untreated Peat Soil	MDQAAIDALVYWAGAFFLGGFAVGVIVKLLLGSMK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F037096

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences