NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F036952

Metagenome / Metatranscriptome Family F036952

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F036952
Family Type Metagenome / Metatranscriptome
Number of Sequences 169
Average Sequence Length 45 residues
Representative Sequence MSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRSGAHSS
Number of Associated Samples 143
Number of Associated Scaffolds 169

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 80.47 %
% of genes near scaffold ends (potentially truncated) 28.40 %
% of genes from short scaffolds (< 2000 bps) 73.37 %
Associated GOLD sequencing projects 137
AlphaFold2 3D model prediction Yes
3D model pTM-score0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (97.633 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(10.651 % of family members)
Environment Ontology (ENVO) Unclassified
(30.769 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(36.686 % of family members)



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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 44.00%    β-sheet: 0.00%    Coil/Unstructured: 56.00%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.38
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 169 Family Scaffolds
PF10590PNP_phzG_C 34.32
PF01450IlvC 20.12
PF07991IlvN 15.38
PF01494FAD_binding_3 7.69
PF13091PLDc_2 1.18
PF00528BPD_transp_1 1.18
PF05494MlaC 0.59
PF03725RNase_PH_C 0.59
PF07311Dodecin 0.59
PF01725Ham1p_like 0.59
PF12697Abhydrolase_6 0.59
PF02335Cytochrom_C552 0.59
PF13424TPR_12 0.59
PF12773DZR 0.59
PF08448PAS_4 0.59
PF00211Guanylate_cyc 0.59
PF00535Glycos_transf_2 0.59
PF13545HTH_Crp_2 0.59
PF01243Putative_PNPOx 0.59
PF00899ThiF 0.59
PF13493DUF4118 0.59
PF13439Glyco_transf_4 0.59
PF00583Acetyltransf_1 0.59
PF13191AAA_16 0.59
PF00072Response_reg 0.59

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 169 Family Scaffolds
COG0059Ketol-acid reductoisomeraseAmino acid transport and metabolism [E] 71.01
COG0499S-adenosylhomocysteine hydrolaseCoenzyme transport and metabolism [H] 15.38
COG06542-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductasesEnergy production and conversion [C] 15.38
COG0578Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 7.69
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 7.69
COG0665Glycine/D-amino acid oxidase (deaminating)Amino acid transport and metabolism [E] 7.69
COG0127Inosine/xanthosine triphosphate pyrophosphatase, all-alpha NTP-PPase familyNucleotide transport and metabolism [F] 0.59
COG0689Ribonuclease PHTranslation, ribosomal structure and biogenesis [J] 0.59
COG1185Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase)Translation, ribosomal structure and biogenesis [J] 0.59
COG2114Adenylate cyclase, class 3Signal transduction mechanisms [T] 0.59
COG2123Exosome complex RNA-binding protein Rrp42, RNase PH superfamilyIntracellular trafficking, secretion, and vesicular transport [U] 0.59
COG2854Periplasmic subunit MlaC of the ABC-type intermembrane phospholipid transporter MlaCell wall/membrane/envelope biogenesis [M] 0.59
COG3303Formate-dependent nitrite reductase, periplasmic cytochrome c552 subunitInorganic ion transport and metabolism [P] 0.59
COG3360Flavin-binding protein dodecinGeneral function prediction only [R] 0.59


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms97.63 %
UnclassifiedrootN/A2.37 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090015|GPICI_8789657All Organisms → cellular organisms → Bacteria1705Open in IMG/M
3300000550|F24TB_10318384All Organisms → cellular organisms → Bacteria2713Open in IMG/M
3300000956|JGI10216J12902_118962436All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300003503|JGI26141J51220_1006329All Organisms → cellular organisms → Bacteria747Open in IMG/M
3300004062|Ga0055500_10002215All Organisms → cellular organisms → Bacteria2650Open in IMG/M
3300004114|Ga0062593_100007455All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria4799Open in IMG/M
3300004114|Ga0062593_101667916All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium695Open in IMG/M
3300004281|Ga0066397_10085045All Organisms → cellular organisms → Bacteria638Open in IMG/M
3300004463|Ga0063356_101684007All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium948Open in IMG/M
3300004480|Ga0062592_101123733All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium729Open in IMG/M
3300005093|Ga0062594_100045999All Organisms → cellular organisms → Bacteria2184Open in IMG/M
3300005294|Ga0065705_10614829All Organisms → cellular organisms → Bacteria698Open in IMG/M
3300005295|Ga0065707_11136895All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria508Open in IMG/M
3300005328|Ga0070676_11413747All Organisms → cellular organisms → Bacteria534Open in IMG/M
3300005341|Ga0070691_10113478All Organisms → cellular organisms → Bacteria1358Open in IMG/M
3300005345|Ga0070692_11019396All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium580Open in IMG/M
3300005434|Ga0070709_11241470All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium600Open in IMG/M
3300005440|Ga0070705_100707633All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300005444|Ga0070694_101570011All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium558Open in IMG/M
3300005467|Ga0070706_100015077All Organisms → cellular organisms → Bacteria7139Open in IMG/M
3300005518|Ga0070699_100418625All Organisms → cellular organisms → Bacteria1212Open in IMG/M
3300005526|Ga0073909_10498303All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300005535|Ga0070684_100043815All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria3866Open in IMG/M
3300005547|Ga0070693_100712363All Organisms → cellular organisms → Bacteria736Open in IMG/M
3300005878|Ga0075297_1011943All Organisms → cellular organisms → Bacteria855Open in IMG/M
3300005879|Ga0075295_1016349All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium835Open in IMG/M
3300005937|Ga0081455_10001726All Organisms → cellular organisms → Bacteria26459Open in IMG/M
3300005937|Ga0081455_10432892All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium904Open in IMG/M
3300005985|Ga0081539_10107606All Organisms → cellular organisms → Bacteria1410Open in IMG/M
3300006041|Ga0075023_100363262All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300006163|Ga0070715_10208839All Organisms → cellular organisms → Bacteria997Open in IMG/M
3300006845|Ga0075421_101707348All Organisms → cellular organisms → Bacteria681Open in IMG/M
3300006854|Ga0075425_102353160All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium591Open in IMG/M
3300006880|Ga0075429_100435338All Organisms → cellular organisms → Bacteria1149Open in IMG/M
3300006881|Ga0068865_100625182All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium913Open in IMG/M
3300006914|Ga0075436_100314919All Organisms → cellular organisms → Bacteria1123Open in IMG/M
3300006954|Ga0079219_11102046All Organisms → cellular organisms → Bacteria673Open in IMG/M
3300007076|Ga0075435_101244344All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium651Open in IMG/M
3300007255|Ga0099791_10476856All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium605Open in IMG/M
3300009038|Ga0099829_10001709All Organisms → cellular organisms → Bacteria12329Open in IMG/M
3300009088|Ga0099830_10205604All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1542Open in IMG/M
3300009088|Ga0099830_10263244All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1367Open in IMG/M
3300009089|Ga0099828_10007952All Organisms → cellular organisms → Bacteria → Proteobacteria7740Open in IMG/M
3300009089|Ga0099828_10009357All Organisms → cellular organisms → Bacteria → Proteobacteria7221Open in IMG/M
3300009137|Ga0066709_103070526Not Available611Open in IMG/M
3300009795|Ga0105059_1004717All Organisms → cellular organisms → Bacteria1175Open in IMG/M
3300009802|Ga0105073_1020737All Organisms → cellular organisms → Bacteria695Open in IMG/M
3300009806|Ga0105081_1002514All Organisms → cellular organisms → Bacteria1737Open in IMG/M
3300009807|Ga0105061_1040127All Organisms → cellular organisms → Bacteria688Open in IMG/M
3300009813|Ga0105057_1107562All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300010048|Ga0126373_12600372Not Available564Open in IMG/M
3300010359|Ga0126376_10465539Not Available1160Open in IMG/M
3300010362|Ga0126377_11238336All Organisms → cellular organisms → Bacteria817Open in IMG/M
3300011271|Ga0137393_10001174All Organisms → cellular organisms → Bacteria16490Open in IMG/M
3300011406|Ga0137454_1021557All Organisms → cellular organisms → Bacteria873Open in IMG/M
3300011414|Ga0137442_1022693All Organisms → cellular organisms → Bacteria1112Open in IMG/M
3300011419|Ga0137446_1031053All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1136Open in IMG/M
3300011427|Ga0137448_1146994All Organisms → cellular organisms → Bacteria654Open in IMG/M
3300011433|Ga0137443_1121717All Organisms → cellular organisms → Bacteria760Open in IMG/M
3300012034|Ga0137453_1031532All Organisms → cellular organisms → Bacteria897Open in IMG/M
3300012133|Ga0137329_1023571All Organisms → cellular organisms → Bacteria743Open in IMG/M
3300012157|Ga0137353_1044505All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium797Open in IMG/M
3300012204|Ga0137374_10017940All Organisms → cellular organisms → Bacteria8089Open in IMG/M
3300012226|Ga0137447_1021364All Organisms → cellular organisms → Bacteria998Open in IMG/M
3300012353|Ga0137367_10325027All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1098Open in IMG/M
3300012909|Ga0157290_10290365All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium598Open in IMG/M
3300012922|Ga0137394_10017030All Organisms → cellular organisms → Bacteria → Proteobacteria5778Open in IMG/M
3300012922|Ga0137394_10054087All Organisms → cellular organisms → Bacteria3320Open in IMG/M
3300012925|Ga0137419_11961345All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300012929|Ga0137404_10020173All Organisms → cellular organisms → Bacteria4796Open in IMG/M
3300012930|Ga0137407_10115768All Organisms → cellular organisms → Bacteria2321Open in IMG/M
3300012931|Ga0153915_10361791All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1634Open in IMG/M
3300012931|Ga0153915_10952992All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium999Open in IMG/M
3300012944|Ga0137410_10011750All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria5938Open in IMG/M
3300012958|Ga0164299_11046027All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium605Open in IMG/M
3300013102|Ga0157371_10750114All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium733Open in IMG/M
3300013102|Ga0157371_10933991All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300014262|Ga0075301_1010837All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria1408Open in IMG/M
3300014497|Ga0182008_10785606All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium551Open in IMG/M
3300015262|Ga0182007_10106524All Organisms → cellular organisms → Bacteria931Open in IMG/M
3300015372|Ga0132256_101304619All Organisms → cellular organisms → Bacteria839Open in IMG/M
3300017930|Ga0187825_10054940All Organisms → cellular organisms → Bacteria1351Open in IMG/M
3300017930|Ga0187825_10201243All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium717Open in IMG/M
3300017939|Ga0187775_10500461All Organisms → cellular organisms → Bacteria518Open in IMG/M
3300017997|Ga0184610_1000844All Organisms → cellular organisms → Bacteria → Proteobacteria6866Open in IMG/M
3300018000|Ga0184604_10085736All Organisms → cellular organisms → Bacteria950Open in IMG/M
3300018028|Ga0184608_10056004All Organisms → cellular organisms → Bacteria1566Open in IMG/M
3300018031|Ga0184634_10029186All Organisms → cellular organisms → Bacteria2171Open in IMG/M
3300018052|Ga0184638_1123764All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium944Open in IMG/M
3300018056|Ga0184623_10397568All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium607Open in IMG/M
3300018059|Ga0184615_10196455All Organisms → cellular organisms → Bacteria1136Open in IMG/M
3300018061|Ga0184619_10070398All Organisms → cellular organisms → Bacteria1544Open in IMG/M
3300018063|Ga0184637_10044622All Organisms → cellular organisms → Bacteria2697Open in IMG/M
3300018070|Ga0184631_10248839All Organisms → cellular organisms → Bacteria734Open in IMG/M
3300018071|Ga0184618_10080211All Organisms → cellular organisms → Bacteria → Proteobacteria1247Open in IMG/M
3300018076|Ga0184609_10065987All Organisms → cellular organisms → Bacteria1575Open in IMG/M
3300018084|Ga0184629_10388514All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium734Open in IMG/M
3300018084|Ga0184629_10518934All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium618Open in IMG/M
3300018422|Ga0190265_10035286All Organisms → cellular organisms → Bacteria4205Open in IMG/M
3300018422|Ga0190265_10036883All Organisms → cellular organisms → Bacteria4127Open in IMG/M
3300018422|Ga0190265_10047118All Organisms → cellular organisms → Bacteria3729Open in IMG/M
3300018422|Ga0190265_10134499All Organisms → cellular organisms → Bacteria2388Open in IMG/M
3300018422|Ga0190265_10395570All Organisms → cellular organisms → Bacteria1479Open in IMG/M
3300018429|Ga0190272_10107352All Organisms → cellular organisms → Bacteria1812Open in IMG/M
3300018429|Ga0190272_10906881All Organisms → cellular organisms → Bacteria828Open in IMG/M
3300019259|Ga0184646_1603141All Organisms → cellular organisms → Bacteria629Open in IMG/M
3300019360|Ga0187894_10084895All Organisms → cellular organisms → Bacteria1731Open in IMG/M
3300019458|Ga0187892_10002496All Organisms → cellular organisms → Bacteria36590Open in IMG/M
3300019458|Ga0187892_10015461All Organisms → cellular organisms → Bacteria8279Open in IMG/M
3300019487|Ga0187893_10120656All Organisms → cellular organisms → Bacteria2228Open in IMG/M
3300019487|Ga0187893_10641463All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium666Open in IMG/M
3300019879|Ga0193723_1008504All Organisms → cellular organisms → Bacteria3346Open in IMG/M
3300019879|Ga0193723_1112682All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium760Open in IMG/M
3300019880|Ga0193712_1065300All Organisms → cellular organisms → Bacteria794Open in IMG/M
3300020060|Ga0193717_1188341All Organisms → cellular organisms → Bacteria569Open in IMG/M
3300020060|Ga0193717_1191215All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium561Open in IMG/M
3300020061|Ga0193716_1066913All Organisms → cellular organisms → Bacteria1627Open in IMG/M
3300021081|Ga0210379_10072507All Organisms → cellular organisms → Bacteria1404Open in IMG/M
3300021081|Ga0210379_10156336All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium971Open in IMG/M
3300021090|Ga0210377_10014480All Organisms → cellular organisms → Bacteria5954Open in IMG/M
3300022534|Ga0224452_1182124All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium646Open in IMG/M
3300022694|Ga0222623_10426483All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium503Open in IMG/M
3300023072|Ga0247799_1096161All Organisms → cellular organisms → Bacteria530Open in IMG/M
3300025324|Ga0209640_11253516All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300025551|Ga0210131_1018444All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1005Open in IMG/M
3300025885|Ga0207653_10230621All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium705Open in IMG/M
3300025910|Ga0207684_10002173All Organisms → cellular organisms → Bacteria20069Open in IMG/M
3300025910|Ga0207684_10099517All Organisms → cellular organisms → Bacteria2483Open in IMG/M
3300025910|Ga0207684_10139316All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2085Open in IMG/M
3300025933|Ga0207706_10049074All Organisms → cellular organisms → Bacteria3731Open in IMG/M
3300025935|Ga0207709_10866697All Organisms → cellular organisms → Bacteria732Open in IMG/M
3300025965|Ga0210090_1001084All Organisms → cellular organisms → Bacteria3216Open in IMG/M
3300025972|Ga0207668_12057180All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300025999|Ga0208417_101721All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium884Open in IMG/M
3300026001|Ga0208000_102964All Organisms → cellular organisms → Bacteria932Open in IMG/M
3300026005|Ga0208285_1000898All Organisms → cellular organisms → Bacteria1504Open in IMG/M
3300026285|Ga0209438_1000442All Organisms → cellular organisms → Bacteria12628Open in IMG/M
3300026285|Ga0209438_1019282All Organisms → cellular organisms → Bacteria2279Open in IMG/M
3300026285|Ga0209438_1099135All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium887Open in IMG/M
3300026320|Ga0209131_1003627All Organisms → cellular organisms → Bacteria10231Open in IMG/M
3300026497|Ga0257164_1084752All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium538Open in IMG/M
3300026535|Ga0256867_10012335All Organisms → cellular organisms → Bacteria3728Open in IMG/M
3300027651|Ga0209217_1131726All Organisms → cellular organisms → Bacteria700Open in IMG/M
(restricted) 3300027799|Ga0233416_10139240All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium831Open in IMG/M
3300027873|Ga0209814_10562837All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium507Open in IMG/M
3300027875|Ga0209283_10012140All Organisms → cellular organisms → Bacteria5133Open in IMG/M
3300027909|Ga0209382_11097597All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium822Open in IMG/M
3300027910|Ga0209583_10334549All Organisms → cellular organisms → Bacteria699Open in IMG/M
3300028380|Ga0268265_10181078All Organisms → cellular organisms → Bacteria1810Open in IMG/M
3300028589|Ga0247818_10256947All Organisms → cellular organisms → Bacteria1155Open in IMG/M
3300028792|Ga0307504_10008508All Organisms → cellular organisms → Bacteria2245Open in IMG/M
3300028828|Ga0307312_10403814Not Available897Open in IMG/M
(restricted) 3300031197|Ga0255310_10030351All Organisms → cellular organisms → Bacteria → Proteobacteria1398Open in IMG/M
(restricted) 3300031197|Ga0255310_10163387All Organisms → cellular organisms → Bacteria615Open in IMG/M
(restricted) 3300031248|Ga0255312_1062292All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium896Open in IMG/M
3300031720|Ga0307469_10223240All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1492Open in IMG/M
3300031720|Ga0307469_10401150All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1171Open in IMG/M
3300032017|Ga0310899_10665385All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300032174|Ga0307470_11638378All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium540Open in IMG/M
3300032174|Ga0307470_11842401All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300032180|Ga0307471_100175560All Organisms → cellular organisms → Bacteria2105Open in IMG/M
3300032770|Ga0335085_10014527All Organisms → cellular organisms → Bacteria11477Open in IMG/M
3300033432|Ga0326729_1003631All Organisms → cellular organisms → Bacteria → Proteobacteria3078Open in IMG/M
3300033433|Ga0326726_10041442All Organisms → cellular organisms → Bacteria → Proteobacteria4020Open in IMG/M
3300033480|Ga0316620_10365634All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1291Open in IMG/M
3300033486|Ga0316624_10234457All Organisms → cellular organisms → Bacteria1446Open in IMG/M
3300033501|Ga0326732_1040176All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300033502|Ga0326731_1039316All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1120Open in IMG/M
3300033513|Ga0316628_100105418All Organisms → cellular organisms → Bacteria3176Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.65%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil9.47%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment8.28%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.69%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil5.33%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.14%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.96%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.96%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil2.96%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand2.96%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.37%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil2.37%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.37%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil2.37%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands1.78%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil1.78%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.78%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks1.78%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere1.78%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands1.18%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.18%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.18%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.18%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere1.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.18%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.18%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze1.18%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere1.18%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.18%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.18%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment0.59%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.59%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.59%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.59%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.59%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.59%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.59%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.59%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil0.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.59%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.59%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.59%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.59%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090015Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000550Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemlyEnvironmentalOpen in IMG/M
3300000956Soil microbial communities from Great Prairies - Kansas, Native Prairie soilEnvironmentalOpen in IMG/M
3300003503Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AMHost-AssociatedOpen in IMG/M
3300004062Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004281Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBioEnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005345Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005535Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005878Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104EnvironmentalOpen in IMG/M
3300005879Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_301EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300005985Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2Host-AssociatedOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009795Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_40_50EnvironmentalOpen in IMG/M
3300009802Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_50_60EnvironmentalOpen in IMG/M
3300009806Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_50_60EnvironmentalOpen in IMG/M
3300009807Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_0_10EnvironmentalOpen in IMG/M
3300009813Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300011406Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2EnvironmentalOpen in IMG/M
3300011414Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2EnvironmentalOpen in IMG/M
3300011419Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2EnvironmentalOpen in IMG/M
3300011427Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT418_2EnvironmentalOpen in IMG/M
3300011433Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT300_2EnvironmentalOpen in IMG/M
3300012034Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT526_2EnvironmentalOpen in IMG/M
3300012133Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT121_2EnvironmentalOpen in IMG/M
3300012157Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT760_2EnvironmentalOpen in IMG/M
3300012204Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012226Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT400_2EnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012909Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S149-409B-1EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300014262Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_TuleA_D1EnvironmentalOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300017930Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017997Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_coexEnvironmentalOpen in IMG/M
3300018000Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018052Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2EnvironmentalOpen in IMG/M
3300018056Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100_b1EnvironmentalOpen in IMG/M
3300018059Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coexEnvironmentalOpen in IMG/M
3300018061Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1EnvironmentalOpen in IMG/M
3300018063Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b2EnvironmentalOpen in IMG/M
3300018070Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_90_b1EnvironmentalOpen in IMG/M
3300018071Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300019259Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_100 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019360White microbial mat communities from a lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - GBC170108-1 metaGEnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300019880Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3a1EnvironmentalOpen in IMG/M
3300020060Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c2EnvironmentalOpen in IMG/M
3300020061Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1EnvironmentalOpen in IMG/M
3300021081Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_coex redoEnvironmentalOpen in IMG/M
3300021090Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_b1 redoEnvironmentalOpen in IMG/M
3300022534Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1EnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300023072Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025551Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025965Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025999Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_201 (SPAdes)EnvironmentalOpen in IMG/M
3300026001Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_80N_104 (SPAdes)EnvironmentalOpen in IMG/M
3300026005Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026535Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)EnvironmentalOpen in IMG/M
3300027651Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027799 (restricted)Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MGEnvironmentalOpen in IMG/M
3300027873Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)Host-AssociatedOpen in IMG/M
3300027875Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028589Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300032017Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4EnvironmentalOpen in IMG/M
3300032174Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300033432Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF6AY SIP fractionEnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300033480Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_BEnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300033501Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF12FN SIP fractionEnvironmentalOpen in IMG/M
3300033502Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF9FY SIP fractionEnvironmentalOpen in IMG/M
3300033513Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_CEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPICI_009346602088090015SoilMSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG
F24TB_1031838433300000550SoilMTFALRVLAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVFPRA*
JGI10216J12902_11896243613300000956SoilMTFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGVLPRS*
JGI26141J51220_100632923300003503Arabidopsis Thaliana RhizosphereMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGGGRPAARLASGL*
Ga0055500_1000221523300004062Natural And Restored WetlandsMSFALRILAVIVFVLAVAGVASPVPMTPLGLALWCASTLPPGSGAHSS*
Ga0062593_10000745523300004114SoilMSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0062593_10166791613300004114SoilMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPPRA*
Ga0066397_1008504513300004281Tropical Forest SoilMSFVLRVLAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPRA*
Ga0063356_10168400713300004463Arabidopsis Thaliana RhizosphereILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0062592_10112373313300004480SoilVRAHLWRCRMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPPRA*
Ga0062594_10004599933300005093SoilMSFVLRVLAVIAFVVATLGVASPVLLTPLGLALWCASTLPLG
Ga0065705_1061482913300005294Switchgrass RhizosphereMSFVLRVLAVIAFVVATLGVASPVLLTPLGLALWCASTLPLGGGRSS*
Ga0065707_1113689523300005295Switchgrass RhizosphereMSFALRILAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGFRLG*
Ga0070676_1141374723300005328Miscanthus RhizosphereMSFALRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRSI*
Ga0070691_1011347823300005341Corn, Switchgrass And Miscanthus RhizosphereMSFALRILAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPGGASSPS*
Ga0070692_1101939623300005345Corn, Switchgrass And Miscanthus RhizosphereTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPPRA*
Ga0070709_1124147023300005434Corn, Switchgrass And Miscanthus RhizosphereMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPVGASSAT*
Ga0070705_10070763313300005440Corn, Switchgrass And Miscanthus RhizosphereMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRTTST*
Ga0070694_10157001123300005444Corn, Switchgrass And Miscanthus RhizosphereMSFALRVLAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGFRLG*
Ga0070706_10001507783300005467Corn, Switchgrass And Miscanthus RhizosphereMSIALRIAAMIVFVLATVGVAPVPMTPLGLALWCASTLVR*
Ga0070699_10041862523300005518Corn, Switchgrass And Miscanthus RhizosphereMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPP
Ga0073909_1049830313300005526Surface SoilMSYALRILAVIAFVLAVAGVAPVPMTPLGLALWCASTLPPRGAASAS*
Ga0070684_10004381513300005535Corn RhizosphereRRSGMSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0070693_10071236323300005547Corn, Switchgrass And Miscanthus RhizosphereMSFALRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGR
Ga0075297_101194323300005878Rice Paddy SoilMSFALRVLAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPRGASSAS*
Ga0075295_101634923300005879Rice Paddy SoilMSFALRILAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPRGASSAS*
Ga0081455_1000172653300005937Tabebuia Heterophylla RhizosphereMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPSPLPRA*
Ga0081455_1043289223300005937Tabebuia Heterophylla RhizosphereMSFALRVLAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVFPRA*
Ga0081539_1010760633300005985Tabebuia Heterophylla RhizosphereMSFVLRILAVIVFVVAVAGVAPVPMTPLGLALWCASTLVPGTSA*
Ga0075023_10036326223300006041WatershedsMSFALRILAVIVFVLAVAGVTAVPMMPLGLALWCASTLPPRTASA*
Ga0070715_1020883923300006163Corn, Switchgrass And Miscanthus RhizosphereMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPSGASSAT*
Ga0075421_10170734823300006845Populus RhizosphereMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPPSGAHPG*
Ga0075425_10235316023300006854Populus RhizosphereSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGSASSAT*
Ga0075429_10043533823300006880Populus RhizosphereMSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRAS
Ga0068865_10062518213300006881Miscanthus RhizosphereLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRSI*
Ga0075436_10031491923300006914Populus RhizosphereMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGSASSAT*
Ga0079219_1110204623300006954Agricultural SoilMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPVG
Ga0075435_10124434423300007076Populus RhizosphereSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPVGASSAT*
Ga0099791_1047685623300007255Vadose Zone SoilMSFALRVLAVIAFVLATLGVASPVLLTPLGLALWCASTLPLRGGVRLG*
Ga0099829_1000170943300009038Vadose Zone SoilMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGAHPS*
Ga0099830_1020560453300009088Vadose Zone SoilMSIALRIAAMIVFALATVGVAPVPMTPLGLALWCASTLVR*
Ga0099830_1026324423300009088Vadose Zone SoilMSIALRIAAMIVFVLATAGVAPVPMTPLGLTLWCASTLVR*
Ga0099828_1000795223300009089Vadose Zone SoilMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPS*
Ga0099828_1000935733300009089Vadose Zone SoilMSIAPRIAAMIVFVLATAGVAPVPMTPLGLTLWCASTLVR*
Ga0066709_10307052623300009137Grasslands SoilMSLALRILAVVVFLLAVAGVAPVPMTPLGLALWCASTLPLRGSLT*
Ga0105059_100471723300009795Groundwater SandMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRTAST*
Ga0105073_102073723300009802Groundwater SandMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGAHPG*
Ga0105081_100251423300009806Groundwater SandMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASMLPPRTAST*
Ga0105061_104012723300009807Groundwater SandMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRTASS*
Ga0105057_110756213300009813Groundwater SandMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPGGGHSS*
Ga0126373_1260037223300010048Tropical Forest SoilIVAVVVFILATAGVAPVPMTPLGLALWCGSTLVP*
Ga0126376_1046553943300010359Tropical Forest SoilRIVAVVVFVLATVGVAPVPMTPLGSRWCGSTLVP*
Ga0126377_1123833613300010362Tropical Forest SoilMSFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGAVPPRA*
Ga0137393_1000117473300011271Vadose Zone SoilMSFALRILAVIVFILAVAGVAPVPMTPLGLAVWCASTLPPRSGAHPS*
Ga0137454_102155723300011406SoilMSFALRILAVIVFILAVAGVASPVLMTPLGLALWCASTLPLGGGGRLS*
Ga0137442_102269323300011414SoilMSFALRVLAVIAFVVATLGVASPVLMTPLGLALWCASTLPPRSGAHPS*
Ga0137446_103105333300011419SoilMSFALRVLAVIAFVVATIGVASPVLMTPLGLALWCASTLPLGGGRSS*
Ga0137448_114699423300011427SoilMSFALRILAVIVFILAVAGVASPVLMTPLGLALWCASTLPPRSGAHPS*
Ga0137443_112171723300011433SoilMSFALRVLAGIAFVVATLGVASPVLLTPLGLALWCASTLPLGGGRSS*
Ga0137453_103153213300012034SoilMSFALRVLAVIAFVVATLGVASPVLMTPLGLALWCASTLPLGG
Ga0137329_102357113300012133SoilMSFALRILAVIVFILAVAGVASPVLMTPLGLALWCA
Ga0137353_104450523300012157SoilMSFALRILAVIAFVVATIGVASPVLMTPLGLALWCASTLPPPGGSRSS*
Ga0137374_10017940103300012204Vadose Zone SoilMSIALRIAAILLFFLATAGVAPVPMTPLGLALWCASTLVR*
Ga0137447_102136413300012226SoilMSFALRVLAVIAFVVATLGVASPVLMTPLGLALWCASTLPLGGGGRLS*
Ga0137367_1032502713300012353Vadose Zone SoilMSIALRIAAILLFILATAGVAPVPMTPLGLALWCASTLVR*
Ga0157290_1029036513300012909SoilMTFTLRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPPRA*
Ga0137394_1001703033300012922Vadose Zone SoilMSFVLRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRWI*
Ga0137394_1005408733300012922Vadose Zone SoilMSFALRILAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGLRLG*
Ga0137419_1196134513300012925Vadose Zone SoilMSFVLRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGLRSI*
Ga0137404_1002017343300012929Vadose Zone SoilMSFALRVLAVIAFVVAALAVASPVLLTPLGLALWCASTLPLGGGRWI*
Ga0137407_1011576833300012930Vadose Zone SoilMSFALRVLAVIAFVVAALAVASPVLLTPLGLALWCASTLPLGGGRSI*
Ga0153915_1036179143300012931Freshwater WetlandsMSFALRILAVIVFVLAVAGVASVPMTPLGLALWCASTLPPRGASRAS*
Ga0153915_1095299223300012931Freshwater WetlandsMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPHGASSAG*
Ga0137410_1001175033300012944Vadose Zone SoilMSFALRILAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGVRLG*
Ga0164299_1104602713300012958SoilLAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0157371_1075011423300013102Corn RhizosphereMSFVLRLLAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0157371_1093399123300013102Corn RhizosphereMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGV
Ga0075301_101083723300014262Natural And Restored WetlandsMSFALRILAVIVFVLAVAGVASPVPMTPLGLALWCASTLPPGSGTHSS*
Ga0182008_1078560613300014497RhizosphereVLRILAVIVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG*
Ga0182007_1010652423300015262RhizosphereMSFVLRILAVVVFVVAVAGVAPVPMTPLGLAPWCASTLVPRASALG*
Ga0132256_10130461913300015372Arabidopsis RhizosphereMSYALRILAVIAFVLAVAGVAPVPMTPLGLALWCASTLPPRGASSAS*
Ga0187825_1005494023300017930Freshwater SedimentMSYALRILAVIAFVLAVAGVAPVPMTPLGLALWCASTLPPRGASSAS
Ga0187825_1020124323300017930Freshwater SedimentMSYALRIVAVIAFVLAVAGVAPGPMTPLGLALWCASTLPPRGASRAS
Ga0187775_1050046123300017939Tropical PeatlandMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRPVSHS
Ga0184610_100084423300017997Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPS
Ga0184604_1008573623300018000Groundwater SedimentMSFALRVLAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGFRLG
Ga0184608_1005600423300018028Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPESGAHPS
Ga0184634_1002918633300018031Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGAHPS
Ga0184638_112376423300018052Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGAHSS
Ga0184623_1039756823300018056Groundwater SedimentAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPS
Ga0184615_1019645513300018059Groundwater SedimentMSFALRILAVIVFVLAVAGVATVPMIPLGLALWCAST
Ga0184619_1007039833300018061Groundwater SedimentMSFALRVLAVIAFVLATLGVATPVLLTPLGLALWCASTLPLGGGFRLG
Ga0184637_1004462223300018063Groundwater SedimentMSFALRILAVIVFILAVAGVAPAVPMTPLGLALWCASTLPPRPAST
Ga0184631_1024883923300018070Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPLGGGRSS
Ga0184618_1008021133300018071Groundwater SedimentVIAFVLATLGVATPVLLTPLGLALWCASTLPLGGGFRLG
Ga0184609_1006598733300018076Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPR
Ga0184629_1038851423300018084Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGTHPS
Ga0184629_1051893423300018084Groundwater SedimentMSFALRILAVIVFILAVASVAPVQMTPLGLALWCASALPPRSGAHPS
Ga0190265_1003528653300018422SoilMSFALRILAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPGSGAHSS
Ga0190265_1003688343300018422SoilMRGPSFMLRVAAVVVFVLAVAGVAPVPMTPLGLALWCGSTLVP
Ga0190265_1004711833300018422SoilMSFALRILAVIAFVLATIGVASPVLLTPLGLALWCASTLPLGGAGRWS
Ga0190265_1013449933300018422SoilMRGPSFLLRVAAVVVFVLAVAGVAPVPMTPLGLALWCGSTLVP
Ga0190265_1039557033300018422SoilMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRTGAHPT
Ga0190272_1010735253300018429SoilLAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPS
Ga0190272_1090688123300018429SoilMSFALRVLAVIAFVVATLGVASPVLLTPLGLALWCASTLPLGGGRL
Ga0184646_160314113300019259Groundwater SedimentMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSG
Ga0187894_1008489513300019360Microbial Mat On RocksMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRSGAHPG
Ga0187892_1000249693300019458Bio-OozeMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRTAST
Ga0187892_10015461103300019458Bio-OozeMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRSGAHSS
Ga0187893_1012065613300019487Microbial Mat On RocksMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLP
Ga0187893_1064146313300019487Microbial Mat On RocksRMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRSGAHPG
Ga0193723_100850413300019879SoilMSFVLRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRSS
Ga0193723_111268213300019879SoilAFVLAALGVASPVLLTPLGLALWCASTLPLGGGFRLG
Ga0193712_106530023300019880SoilMSFALRILAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGFRLG
Ga0193717_118834123300020060SoilMSFALRVLAVIAFVVATIGVASPVLMTPLGLALWCAS
Ga0193717_119121523300020060SoilMSFALRVLAVIAFVVATIGVASPVLMTPLGLALWCASTLPLGGGGRLS
Ga0193716_106691323300020061SoilMSFALRILAVIAFVVATLGVASPVLLTPLGLALWCASTLPLGGGRL
Ga0210379_1007250713300021081Groundwater SedimentMSFALRILAVIVFILAVAGVASPVLMTPLGLALWCASTLPPRSGAHPS
Ga0210379_1015633633300021081Groundwater SedimentRVSMSFALRILAVIVFILAVAGVASPVLMTPLGLALWCASTLPPRSGAHPS
Ga0210377_1001448043300021090Groundwater SedimentMSFALRILAVIAFVVATIGVASPVLMTPLGLALWCASTLPLGGGRSS
Ga0224452_118212413300022534Groundwater SedimentVSMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPQSGAHPS
Ga0222623_1042648323300022694Groundwater SedimentALRVLAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGFRLG
Ga0247799_109616113300023072SoilMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCAST
Ga0209640_1125351623300025324SoilMSFALRILAVIVFVLAVAGVATVPMIPLGLALWCASTLPPRTTSS
Ga0210131_101844423300025551Natural And Restored WetlandsMSFALRILAVIVFVLAVAGVASPVPMTPLGLALWCASTLPPGSGTHSS
Ga0207653_1023062113300025885Corn, Switchgrass And Miscanthus RhizosphereRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRSI
Ga0207684_10002173193300025910Corn, Switchgrass And Miscanthus RhizosphereMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRTTST
Ga0207684_1009951743300025910Corn, Switchgrass And Miscanthus RhizosphereMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPSGASSAT
Ga0207684_1013931663300025910Corn, Switchgrass And Miscanthus RhizosphereMSIALRIAAMIVFVLATVGVAPVPMTPLGLALWCASTLVR
Ga0207706_1004907443300025933Corn RhizosphereMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVVPPRA
Ga0207709_1086669713300025935Miscanthus RhizosphereSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLVPRASALG
Ga0210090_100108443300025965Natural And Restored WetlandsMSFALRILAVIVFVLAVAGVASPVPMTPLGLALWCASTLPPGSGAHSS
Ga0207668_1205718023300025972Switchgrass RhizosphereMSFALRVLAVIAFVVAALGVASPVLLTPLGLALWC
Ga0208417_10172123300025999Rice Paddy SoilAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPGGASSPS
Ga0208000_10296423300026001Rice Paddy SoilMSFVLRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRGASSAS
Ga0208285_100089823300026005Rice Paddy SoilMSFALRILAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPGGASSPS
Ga0209438_1000442123300026285Grasslands SoilMSFVLRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRWI
Ga0209438_101928213300026285Grasslands SoilMSFALRILAVIAFVLATLGVASPVLLTPLGLALWCASTLPLGGGLRLG
Ga0209438_109913523300026285Grasslands SoilMRISMSFALRILAVIAFVLATLGVASSVLLTPLGLALWCASTLPLGGGVRLG
Ga0209131_100362713300026320Grasslands SoilMSFALRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGLRSI
Ga0257164_108475223300026497SoilVSMSFALRILAVIVFILAVAGVAPVPMTPLGLALWCASTLPPRSGAHPS
Ga0256867_1001233563300026535SoilMSFALRILAVIAFVAATIGIASPVLLTPLGLALWCASTLPLGSGTRWT
Ga0209217_113172623300027651Forest SoilMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGGA
(restricted) Ga0233416_1013924023300027799SedimentMSFALRILAVVVFVLAVAGVGPMHMMTPLGLALWCASTLPPRSGAHPG
Ga0209814_1056283723300027873Populus RhizosphereMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGSASSAT
Ga0209283_1001214063300027875Vadose Zone SoilMSIAPRIAAMIVFVLATAGVAPVPMTPLGLTLWCASTLVR
Ga0209382_1109759723300027909Populus RhizosphereMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPPSGAHPG
Ga0209583_1033454913300027910WatershedsMSFALRILAVIVFVLAVAGVTAVPMMPLGLALWCASTLPPRTASA
Ga0268265_1018107823300028380Switchgrass RhizosphereMSFALRVLAVIAFVVAALGVASPVLLTPLGLALWCASTLPLGGGRSI
Ga0247818_1025694723300028589SoilMSFVLRILAVVVFVVAVAGVAPVPMTPLGLALWCASTLV
Ga0307504_1000850833300028792SoilMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRTAST
Ga0307312_1040381433300028828SoilMRGRSFMLRVAAVVVFILATVGVAPVPMTPLGLALWCGSTLVP
(restricted) Ga0255310_1003035113300031197Sandy SoilILAVIVFVLAVAGVTAVPMMPLGLALWCASTLPPRTASA
(restricted) Ga0255310_1016338723300031197Sandy SoilMSFALRILAVIAFVVATIGVASPVLMTPLGLALWCASTLAPGDGARSS
(restricted) Ga0255312_106229233300031248Sandy SoilRILAVIVFVLAVAGVAPVPMTPLGIALWCASTLPPRSGAHPG
Ga0307469_1022324033300031720Hardwood Forest SoilMTFALRVLAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVFPRA
Ga0307469_1040115023300031720Hardwood Forest SoilMSFVLRVLAVIAFVAAALGVASPVLLTPLGLALWCASTLPLGGGRLS
Ga0310899_1066538523300032017SoilMTFALRILAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGAVPPRA
Ga0307470_1163837823300032174Hardwood Forest SoilQHRRCRKSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPRTTST
Ga0307470_1184240123300032174Hardwood Forest SoilMTFALRVLAVIVFVLATVGVAPVPMTPLGLALWCASTLPPGVFP
Ga0307471_10017556013300032180Hardwood Forest SoilMSFALRVLAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPGGASSAT
Ga0335085_1001452733300032770SoilVSFALRILAVIVFVLAVGGVAPVPMTPLGLALWCASTLPPHPAAHS
Ga0326729_100363123300033432Peat SoilMSFALRILAVIAFVLAVAGVAPVPMTPLGLALWCASTLPPRGAPGAS
Ga0326726_1004144243300033433Peat SoilMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPHGASSAS
Ga0316620_1036563433300033480SoilMSFALRILAVVVFVLAVAGVAPVPMTPLGLALWCASTLPPHGASSAG
Ga0316624_1023445723300033486SoilMSFALRILAVIVFVLAVAGVAPVPMTPLGLALWCASTLPPHGASSAG
Ga0326732_104017613300033501Peat SoilMSFALRILAVIAFVLAVAGVAPVPMTPLGLALWCASTL
Ga0326731_103931613300033502Peat SoilAVIAFVLAVAGVAPVPMTPLGLALWCASTLPPRGAPGAS
Ga0316628_10010541843300033513SoilMSFALRILAVIVFVLAVAGVASVPMTPLGLALWCASTLPPRGASRAS


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